AlfalfaGEDB | MsaG047142

M. sativa ssp. caerulea / MsaG047142

KEGG: -
GO: -
PFAM: PF03101.18

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG047142	XP_024630715.1	71.088	294	56	6	1	294	1	265	3.63e-128	391

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG047142	sp\|Q9SY66\|FRS11_ARATH	28.205	195	123	6	114	303	11	193	2.50e-15	82.4

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG047142	A0A396JNK0	70.690	290	56	6	1	290	1	261	6.09e-128	382

TFs/TRs:

Gene ID	Type	Classification
MsaG047142	TF	FAR1

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000458	MsaG047142	0.813544	4.182203e-51	7.794046e-49
MsaG001853	MsaG047142	0.850830	2.512710e-60	1.401424e-57
MsaG004279	MsaG047142	0.811911	9.485040e-51	1.697331e-48
MsaG004347	MsaG047142	0.856074	7.975303e-62	5.357001e-59
MsaG004538	MsaG047142	0.848979	8.229364e-60	4.307449e-57
MsaG005003	MsaG047142	0.817621	5.219969e-52	1.078907e-49
MsaG005092	MsaG047142	0.800225	2.662067e-48	3.617501e-46
MsaG005170	MsaG047142	0.832351	1.797026e-55	5.566175e-53
MsaG006122	MsaG047142	0.827764	2.333455e-54	6.339128e-52
MsaG006335	MsaG047142	0.813973	3.367628e-51	6.343987e-49
MsaG006351	MsaG047142	0.808365	5.466441e-50	8.974118e-48
MsaG006452	MsaG047142	0.818429	3.435956e-52	7.251268e-50
MsaG006623	MsaG047142	0.800167	2.734374e-48	3.710913e-46
MsaG007431	MsaG047142	0.824025	1.785314e-53	4.373222e-51
MsaG009639	MsaG047142	0.811758	1.023891e-50	1.825277e-48
MsaG011087	MsaG047142	0.844765	1.156276e-58	5.257646e-56
MsaG012467	MsaG047142	0.802092	1.109179e-48	1.572380e-46
MsaG046180	MsaG047142	0.817956	4.390210e-52	9.153030e-50
MsaG046696	MsaG047142	0.806903	1.113202e-49	1.764774e-47
MsaG047142	MsaG001786	0.834061	6.770061e-56	2.204851e-53
MsaG047142	MsaG010579	0.808371	5.449403e-50	8.947508e-48
MsaG047142	MsaG009665	0.857338	3.402894e-62	2.394168e-59
MsaG047142	MsaG028732	0.826097	5.815853e-54	1.508132e-51
MsaG047142	MsaG028944	0.821432	7.118929e-53	1.626122e-50
MsaG047142	MsaG031365	0.803744	5.073779e-49	7.471508e-47
MsaG047142	MsaG037155	0.808892	4.222263e-50	7.020488e-48
MsaG047142	MsaG039945	0.806852	1.141106e-49	1.806830e-47
MsaG047142	MsaG042416	0.809607	2.972892e-50	5.028852e-48
MsaG047142	MsaG042989	0.851730	1.403758e-60	8.076918e-58
MsaG014866	MsaG047142	0.815795	1.334475e-51	2.632054e-49
MsaG017656	MsaG047142	0.814667	2.370096e-51	4.543127e-49
MsaG018577	MsaG047142	0.812697	6.402294e-51	1.168164e-48
MsaG019296	MsaG047142	0.801386	1.546305e-48	2.157165e-46
MsaG019615	MsaG047142	0.836827	1.363867e-56	4.826144e-54
MsaG020353	MsaG047142	0.805181	2.553593e-49	3.887796e-47
MsaG020415	MsaG047142	0.814455	2.639200e-51	5.032138e-49
MsaG021049	MsaG047142	0.819720	1.752369e-52	3.825399e-50
MsaG023275	MsaG047142	0.810460	1.950996e-50	3.369386e-48
MsaG024037	MsaG047142	0.803564	5.527505e-49	8.105653e-47
MsaG024453	MsaG047142	0.814793	2.222708e-51	4.274335e-49
MsaG024622	MsaG047142	0.802615	8.667744e-49	1.243572e-46
MsaG027877	MsaG047142	0.811225	1.334867e-50	2.348792e-48
MsaG028154	MsaG047142	0.815889	1.271531e-51	2.513950e-49
MsaG031124	MsaG047142	0.812690	6.422834e-51	1.171726e-48
MsaG035000	MsaG047142	0.813502	4.272008e-51	7.952914e-49

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG047142	MtrunA17_Chr1g0171741	70.690	290	56	6	1	290	1	261	1.17e-131	382
MsaG047142	MtrunA17_Chr1g0203051	38.860	193	117	1	103	294	20	212	5.97e-38	147
MsaG047142	MtrunA17_Chr1g0203051	38.060	134	83	0	355	488	488	621	7.49e-25	108
MsaG047142	MtrunA17_Chr2g0308841	41.007	139	82	0	353	491	79	217	1.40e-33	127
MsaG047142	MtrunA17_Chr8g0389811	36.313	179	101	2	107	272	17	195	1.04e-31	120
MsaG047142	MtrunA17_Chr2g0331371	34.104	173	104	2	121	293	17	179	2.05e-25	103
MsaG047142	MtrunA17_Chr6g0473421	33.835	133	84	3	121	251	17	147	1.65e-20	88.2
MsaG047142	MtrunA17_Chr2g0287651	31.481	162	106	2	138	294	47	208	6.37e-20	93.6
MsaG047142	MtrunA17_Chr2g0287651	33.582	134	89	0	358	491	489	622	1.45e-15	79.7
MsaG047142	MtrunA17_Chr2g0294841	29.146	199	112	8	116	303	13	193	5.34e-14	74.7
MsaG047142	MtrunA17_Chr1g0172931	33.981	103	68	0	141	243	56	158	7.38e-14	69.3
MsaG047142	MtrunA17_Chr2g0276841	31.250	144	88	5	167	303	76	215	1.22e-12	70.5
MsaG047142	MtrunA17_Chr2g0329361	36.066	122	73	4	146	266	49	166	1.08e-11	65.1
MsaG047142	MtrunA17_Chr6g0458391	30.000	140	87	4	165	300	95	227	5.16e-11	65.1

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG047142	AT1G10240.2	28.205	195	123	6	114	303	11	193	2.54e-16	82.4
MsaG047142	AT1G10240.1	28.205	195	123	6	114	303	11	193	2.54e-16	82.4
MsaG047142	AT5G28530.3	27.338	139	98	2	167	303	61	198	8.88e-13	71.2
MsaG047142	AT5G28530.2	27.338	139	98	2	167	303	61	198	8.88e-13	71.2
MsaG047142	AT5G28530.1	27.338	139	98	2	167	303	61	198	9.40e-13	71.2
MsaG047142	AT5G28530.4	27.338	139	98	2	167	303	61	198	1.26e-12	70.5
MsaG047142	AT5G28530.5	27.338	139	98	2	167	303	61	198	1.32e-12	70.5

Find 0 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Contig8	gene	286183	288301	286183	ID=MsaG047142
Contig8	mRNA	286183	288301	286183	ID=MsaT047142.1;Parent=MsaG047142
Contig8	exon	286183	287062	286183	ID=MsaT047142.1.exon1;Parent=MsaT047142.1
Contig8	CDS	286183	287062	286183	ID=cds.MsaT047142.1;Parent=MsaT047142.1
Contig8	exon	287706	288301	287706	ID=MsaT047142.1.exon2;Parent=MsaT047142.1
Contig8	CDS	287706	288301	287706	ID=cds.MsaT047142.1;Parent=MsaT047142.1

Gene Sequence

>MsaT047142.1

ATGGGATACCGAGCTTTTGACTGTGAGCAATTTATTGGGCCTGAAAAAGGTGATGGAAGTCCCGAAGAAGGGGTAGACATTAGAGAATCTGAAGAAGAGGTTAGGGTTGAGGAGGGGGGATACAGTGGTAACATGGAATATGATGGAAGTGATTATGAAGGCGAAGACAATGTTGAGTTTGACGAAGATGGAGGTAGAGGGCAATCCGGAAACATTAGTGACTTTGATGAAGGGGTCAATTATGGTGACATGGAAGAAGATGGAAGTGATGAAGAAGGGGTAGACAATGCTGACATTGAAGACTATGGAAGTGATGAAGAAGGGGTAGACAATGCTGACATTGAAGACGATGGAAGTGATGCAGAAGGGGTAGACTATGGTGACATGGAAGAAGATGGAAGTCACAATGAAGACCACTATGTCCAAGTTGATAGTGTTGAGGACGTTGTGGCATTGGACCTAAGTGGTTTAGGGCCTCTATTTGTTAGGAGAATTGCGTTTGGAAGCCTAGACATTGCATATGAGTTCTATAAATCCTATGGAAGAGCGAATGGATTTTCAGTTCGCAAAGGCAAGTTGCTTTATTGCAAAACGGGAGAACTAGTGCAACGCACATTTGTTTGCCATAGACAAGGATATAGGGAAAAAAGAGGATTAAGTGAGGCGAATAGAAAGCGTAAGGAAAAACCTAATACTCGATGTGGATGTCAAGCTATGTTTCGGGTGCACATAAACATTACGACACAACGCTGGTATGCTACAGTTTTTGATGACCGGCACAACCATGCGCTAGTATCGCAGGAACATTGTGGACTGCTATCTTCACACTGTGTAATGACAGATTCAGACATAATGCAAATGAACAATATGTTAAAAAGTGGAAGTGGGCTGAAACTGTTGATTCATTTGGATTGCACGACAACAATTGGATCAAAGAAACATATACGAAGAGAAAGGCATGGGCAACAGCACATATACGGGGCCAGTTTTTTGCAGGCTTCAGAACTACATCAAGATGCGAGGGGTTGCATTCAGAGATGGGGAAGTTTGTTCATTCGTTACAACTTGGAAGATTTTTTACTACACTATCACCGTTGTCTCAACTTCATGCGGTATAGAGAGGTACAAGCAGACTTTGAAAGTGATTATGGTGATCCAGTTCTCTCTACAAGATTCCCTAAGCTTGAGCTCTCTGGTGCAAAGGTATTTACGAAAGAGATATTATGTAAATATCAGATTATAATCAACCGATCTTCTGCAATGATTGTATCTGGATCGAAAGAAACATGTGGGTACTACATCTATACAGTTAATAAGTACATGAGGCCAGACCGGGAGTGGCGTGTATCATTTAACCCTGCAGAAGACATTTTCAAGTGTGCTTGTCAGAGGATGGAGTCATTTGGAATTCCATGTGAGCATATCATTGCAGTTTTGGTTTTTATTGATTATGATGAGTTGCCTCAATCCTTGTAA

Protein sequence

>MsaT047142.1

MGYRAFDCEQFIGPEKGDGSPEEGVDIRESEEEVRVEEGGYSGNMEYDGSDYEGEDNVEFDEDGGRGQSGNISDFDEGVNYGDMEEDGSDEEGVDNADIEDYGSDEEGVDNADIEDDGSDAEGVDYGDMEEDGSHNEDHYVQVDSVEDVVALDLSGLGPLFVRRIAFGSLDIAYEFYKSYGRANGFSVRKGKLLYCKTGELVQRTFVCHRQGYREKRGLSEANRKRKEKPNTRCGCQAMFRVHINITTQRWYATVFDDRHNHALVSQEHCGLLSSHCVMTDSDIMQMNNMLKSGSGLKLLIHLDCTTTIGSKKHIRRERHGQQHIYGASFLQASELHQDARGCIQRWGSLFIRYNLEDFLLHYHRCLNFMRYREVQADFESDYGDPVLSTRFPKLELSGAKVFTKEILCKYQIIINRSSAMIVSGSKETCGYYIYTVNKYMRPDREWRVSFNPAEDIFKCACQRMESFGIPCEHIIAVLVFIDYDELPQSL*