AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG047151


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG047151 MtrunA17_Chr4g0058011 96.864 574 15 2 1 572 1 573 0.0 1143
MsaG047151 MtrunA17_Chr3g0116431 54.383 559 185 16 21 568 12 511 0.0 555
MsaG047151 MtrunA17_Chr7g0249221 37.701 374 186 12 229 571 27 384 1.26e-68 228
MsaG047151 MtrunA17_Chr5g0438891 38.272 324 164 13 229 536 36 339 1.56e-64 217
MsaG047151 MtrunA17_Chr2g0286151 34.097 349 179 11 229 536 44 382 7.92e-51 182
MsaG047151 MtrunA17_Chr1g0195891 33.540 322 167 13 222 510 39 346 9.05e-48 170
MsaG047151 MtrunA17_Chr1g0195891 41.880 117 65 1 457 570 91 207 6.66e-22 97.4
MsaG047151 MtrunA17_Chr8g0356241 30.641 359 152 10 213 532 174 474 1.08e-44 166
MsaG047151 MtrunA17_Chr8g0356241 35.714 168 65 4 229 353 309 476 9.58e-25 108
MsaG047151 MtrunA17_Chr8g0356241 48.780 82 37 1 452 533 185 261 1.24e-17 86.3
MsaG047151 MtrunA17_Chr4g0066941 32.738 336 177 12 229 532 43 361 1.07e-39 151
MsaG047151 MtrunA17_Chr4g0066941 29.341 334 192 9 228 532 87 405 9.62e-34 134
MsaG047151 MtrunA17_Chr4g0066941 40.777 103 53 1 457 559 88 182 6.98e-19 90.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG047151 AT3G48440.1 58.610 331 125 7 210 531 90 417 3.14e-134 399
MsaG047151 AT3G48440.1 47.561 82 36 3 228 307 342 418 1.42e-14 76.6
MsaG047151 AT3G48440.1 29.268 164 62 5 456 571 106 263 2.18e-12 69.7
MsaG047151 AT5G63260.1 54.121 364 149 8 212 566 79 433 4.42e-124 372
MsaG047151 AT5G63260.2 52.116 378 151 8 212 566 79 449 1.68e-122 369
MsaG047151 AT3G02830.1 42.059 340 137 12 226 532 34 346 5.73e-72 236
MsaG047151 AT3G02830.1 44.118 102 56 1 457 557 82 183 1.69e-21 97.4
MsaG047151 AT3G02830.2 42.059 340 137 12 226 532 14 326 5.83e-72 235
MsaG047151 AT3G02830.2 44.118 102 56 1 457 557 62 163 1.33e-21 97.4
MsaG047151 AT5G16540.3 40.909 308 147 9 229 532 18 294 3.01e-66 219
MsaG047151 AT5G16540.3 39.474 114 56 1 457 557 63 176 3.46e-19 89.7
MsaG047151 AT5G16540.3 41.250 80 42 2 228 306 62 137 4.70e-12 68.2
MsaG047151 AT5G16540.1 40.909 308 147 9 229 532 39 315 4.35e-66 220
MsaG047151 AT5G16540.1 39.474 114 56 1 457 557 84 197 3.90e-19 90.1
MsaG047151 AT5G16540.1 41.250 80 42 2 228 306 83 158 4.67e-12 68.6
MsaG047151 AT3G06410.1 38.872 337 163 11 229 531 51 378 4.46e-64 217
MsaG047151 AT3G06410.1 49.367 79 38 1 456 532 96 174 2.02e-17 85.5
MsaG047151 AT3G06410.1 41.772 79 46 0 455 533 49 127 3.76e-15 78.6
MsaG047151 AT3G06410.1 33.333 93 58 2 215 306 289 378 1.82e-11 67.0
MsaG047151 AT2G47850.1 39.420 345 159 14 225 536 38 365 3.81e-63 215
MsaG047151 AT2G47850.3 39.420 345 159 14 225 536 38 365 3.81e-63 215
MsaG047151 AT5G18550.1 38.066 331 169 10 229 531 48 370 1.59e-62 213
MsaG047151 AT5G18550.1 40.179 112 50 2 457 551 94 205 6.36e-18 87.0
MsaG047151 AT5G18550.1 44.872 78 43 0 455 532 46 123 7.04e-17 84.0
MsaG047151 AT5G18550.4 38.066 331 169 10 229 531 48 370 2.12e-62 213
MsaG047151 AT5G18550.4 40.179 112 50 2 457 551 94 205 7.74e-18 86.7
MsaG047151 AT5G18550.4 44.304 79 44 0 455 533 46 124 8.54e-17 83.6
MsaG047151 AT5G18550.3 38.066 331 169 10 229 531 16 338 2.79e-62 211
MsaG047151 AT5G18550.3 40.179 112 50 2 457 551 62 173 1.11e-17 86.3
MsaG047151 AT5G18550.3 44.304 79 44 0 455 533 14 92 1.27e-16 82.8
MsaG047151 AT5G16540.2 39.935 308 143 11 229 532 39 308 3.49e-59 201
MsaG047151 AT5G16540.2 39.474 114 56 1 457 557 84 197 2.77e-19 90.5
MsaG047151 AT5G16540.2 41.250 80 42 2 228 306 83 158 4.73e-12 68.2
MsaG047151 AT1G04990.1 36.000 325 170 11 229 543 44 340 4.41e-59 202
MsaG047151 AT1G04990.6 36.000 325 170 11 229 543 44 340 4.41e-59 202
MsaG047151 AT1G04990.2 36.000 325 170 11 229 543 44 340 4.41e-59 202
MsaG047151 AT5G18550.2 35.542 332 163 11 229 531 48 357 3.65e-56 196
MsaG047151 AT5G18550.2 40.179 112 50 2 457 551 94 205 5.61e-18 87.4
MsaG047151 AT5G18550.2 44.872 78 43 0 455 532 46 123 6.60e-17 84.0
MsaG047151 AT2G32930.3 34.234 333 184 10 229 547 14 325 7.46e-54 189
MsaG047151 AT2G32930.2 34.234 333 184 10 229 547 41 352 7.77e-54 189
MsaG047151 AT5G16540.4 38.516 283 139 9 229 507 18 269 4.04e-51 177
MsaG047151 AT5G16540.4 39.474 114 56 1 457 557 63 176 1.34e-19 89.4
MsaG047151 AT5G16540.4 41.250 80 42 2 228 306 62 137 2.96e-12 67.8
MsaG047151 AT1G04990.5 33.846 325 157 12 229 543 44 320 2.32e-50 178
MsaG047151 AT2G32930.1 33.934 333 181 11 229 547 41 348 2.43e-50 180
MsaG047151 AT2G47850.2 35.455 330 167 12 225 536 38 339 8.22e-47 170
MsaG047151 AT3G12680.1 30.588 340 140 9 228 532 221 499 2.09e-44 165
MsaG047151 AT3G12680.1 33.939 165 69 3 229 353 337 501 7.44e-24 105
MsaG047151 AT3G12680.1 30.380 237 98 5 323 533 172 367 1.21e-22 102
MsaG047151 AT3G12680.1 30.732 205 81 6 208 351 242 446 4.95e-22 100
MsaG047151 AT1G04990.3 35.926 270 141 10 284 543 12 259 4.33e-44 159
MsaG047151 AT1G04990.3 41.333 75 42 1 279 351 178 252 3.01e-11 65.5
MsaG047151 AT2G47850.4 40.637 251 105 12 317 536 6 243 1.49e-39 148
MsaG047151 AT2G47850.4 41.463 82 46 1 272 351 158 239 2.47e-16 81.3
MsaG047151 AT2G47850.4 40.244 82 44 2 229 309 164 241 2.70e-12 68.9
MsaG047151 AT1G04990.4 33.333 270 128 11 284 543 12 239 1.66e-35 135
MsaG047151 AT1G48195.1 64.935 77 27 0 455 531 4 80 1.05e-32 120
MsaG047151 AT1G48195.1 43.836 73 39 1 280 350 8 80 7.70e-14 67.4

Find 0 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Contig8 gene 329108 332798 329108 ID=MsaG047151
Contig8 mRNA 329108 332798 329108 ID=MsaT047151.1;Parent=MsaG047151
Contig8 exon 329108 329305 329108 ID=MsaT047151.1.exon6;Parent=MsaT047151.1
Contig8 CDS 329108 329305 329108 ID=cds.MsaT047151.1;Parent=MsaT047151.1
Contig8 exon 329492 329761 329492 ID=MsaT047151.1.exon5;Parent=MsaT047151.1
Contig8 CDS 329492 329761 329492 ID=cds.MsaT047151.1;Parent=MsaT047151.1
Contig8 exon 330050 330322 330050 ID=MsaT047151.1.exon4;Parent=MsaT047151.1
Contig8 CDS 330050 330322 330050 ID=cds.MsaT047151.1;Parent=MsaT047151.1
Contig8 exon 330419 330532 330419 ID=MsaT047151.1.exon3;Parent=MsaT047151.1
Contig8 CDS 330419 330532 330419 ID=cds.MsaT047151.1;Parent=MsaT047151.1
Contig8 exon 331145 331210 331145 ID=MsaT047151.1.exon2;Parent=MsaT047151.1
Contig8 CDS 331145 331210 331145 ID=cds.MsaT047151.1;Parent=MsaT047151.1
Contig8 exon 332001 332798 332001 ID=MsaT047151.1.exon1;Parent=MsaT047151.1
Contig8 CDS 332001 332798 332001 ID=cds.MsaT047151.1;Parent=MsaT047151.1
Gene Sequence

>MsaT047151.1

ATGGAACACTCTGAAGAAATCGATTTAGCTGCTACTGTTTCCAACGCCGAAGAACCCCAACTGGGTTCTGAGGTTCAACAATCTTCACCAGTTGATCATCATTCTCCACCGTCAGATCTCAATCAAACGGTTCAAAAGAACGATGATGAACTTGCTGTGGAGCTTCATGAGAAGTTGGATTTGAAGGTTGAAGATGAAGGAGTTGTTGAAACTGATGATAAAGTTTCGAACTTTAACGATGGTGAAGTAGTTTCCGATGAAAGGGGTGCTGAAATTGATGATAAAGTTTGGAACTTTAACGATGGTGAACGAGTTGGAGATGAAAGGGGTGCTGAAACTGATGATAAAGTTTTGAACTTTGATGATGGCGAACGAGTTGGTGATGAAGAATCTCTGAAGGGTGAAAAGGAAGATGAAGAAGAATCTGTTAAGGGTGAAAATGAAGAATTTGTTGAGGGTGAAGAAAGGGTTGATGTTGATGGAGATAGCAAAGGTTGGGATACTAATAGTTGGAATGAGAATGTGAATGAAGAGCTTGGTGGTGGTAGAGATGCTGATGATTGGGGTTATGGTGGTGGTGATGGTGGTGGTGCTGGTTATGGTGCTGGATATGGGGATGGTTATGGTGACGGTTATGGCTATGGTGATGAGAAGGAAGAGAAAAGCAGCGATGGAACTCATCAATTCCCTTTGAGGCCTGAAGCTGAAGATTGTTCATTTTATATGAAGACTGGGAGTTGCAAGTTTGGATTCAACTGCAAATTTAATCACCCCATTAGGAGGAAAAACCAAAACCAGGCTGTTAGGGAGAAGGTGCGAGAAAGAGAAGAACCAGAAGAGAACGCGGGCCAGACAGAATGCAAGTATTATCAAAGGTCTGGAGGTTGTAAGTTTGGAAAAGCTTGTAAGTACAACCACTCAAGAGGGTTCACAGCACCAATTTCAGAACTTAACTTTCTCGGCTTACCTATTCGTCTGGGAGAGAGAGAGTGCCCCTATTACATGCGCACTGGCTCTTGTAAGTTTGGATCGAACTGTAGGTTTAATCATCCTGATCCTACAACTGTCGGAGGATCTGATCCTCAATCAGGGTATGGTAATGGAGGGTCCGTTTCACTACGAGGTGTATCACAACAACCTGTCGCCTCATGGTCTTCTTCAAGAAAGTTAAATGAAACACCTTTTGCTCCATTGATGCCTACGCCTACTCAAGGACTTGCTCCCCAAACTTCTGATTGGAATGGATATCAGGCACCTGCCTACTTATCAGAGAGGATCATGCATCCATCTTCTACTTATGTCATGAACAACCCAACAATTGAAACAAATGTTTACATGCACCATCAAAAGCAGATGCCGTTTGAAGTGTTTCCAGAAAGGCCTGGTGAACCTGAATGCAGTTTCTTCATTAAAACTGGGGATTGCAAGTTCAAATCTAATTGTAAATTTCACCATCCAAAGAATCGGGTTGCAAAGTTGCCTCCTTGCAACCTTAGTGACAAGGGCCTGCCTTTGAGACCTGACCAGAGTGTCTGCTCGCACTATAGTCGTTATGGAATTTGCAAATTTGGGCCAGCTTGTAGATTTGACCACCCAGAAAGCGCACTTCCCCTAATGATGCCTGGACTCGGACAACAATCCTATGCAAACTCAGCTAATGCTCAGGTGGCTGGGATGGGTGGAAGTGCAAGTGATGCAACAATTCAACAATCTGTCTAA

Protein sequence

>MsaT047151.1

MEHSEEIDLAATVSNAEEPQLGSEVQQSSPVDHHSPPSDLNQTVQKNDDELAVELHEKLDLKVEDEGVVETDDKVSNFNDGEVVSDERGAEIDDKVWNFNDGERVGDERGAETDDKVLNFDDGERVGDEESLKGEKEDEEESVKGENEEFVEGEERVDVDGDSKGWDTNSWNENVNEELGGGRDADDWGYGGGDGGGAGYGAGYGDGYGDGYGYGDEKEEKSSDGTHQFPLRPEAEDCSFYMKTGSCKFGFNCKFNHPIRRKNQNQAVREKVREREEPEENAGQTECKYYQRSGGCKFGKACKYNHSRGFTAPISELNFLGLPIRLGERECPYYMRTGSCKFGSNCRFNHPDPTTVGGSDPQSGYGNGGSVSLRGVSQQPVASWSSSRKLNETPFAPLMPTPTQGLAPQTSDWNGYQAPAYLSERIMHPSSTYVMNNPTIETNVYMHHQKQMPFEVFPERPGEPECSFFIKTGDCKFKSNCKFHHPKNRVAKLPPCNLSDKGLPLRPDQSVCSHYSRYGICKFGPACRFDHPESALPLMMPGLGQQSYANSANAQVAGMGGSASDATIQQSV*