AlfalfaGEDB | MsaG047157

M. sativa ssp. caerulea / MsaG047157

KEGG: K10523
GO: GO:0000151 GO:0000302 GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0007623 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009409 GO:0009553 GO:0009555 GO:0009611 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009737 GO:0009738 GO:0009743 GO:0009751 GO:0009753 GO:0009755 GO:0009756 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010167 GO:0010182 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0014070 GO:0019005 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0023052 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031461 GO:0031625 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0033993 GO:0042221 GO:0042493 GO:0042542 GO:0043085 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0045935 GO:0046677 GO:0048229 GO:0048511 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051246 GO:0051252 GO:0051338 GO:0051347 GO:0051603 GO:0051716 GO:0051972 GO:0051973 GO:0060255 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071322 GO:0071365 GO:0071396 GO:0071495 GO:0071704 GO:0080090 GO:0097305 GO:0097306 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700 GO:1901701 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2000278 GO:2000573 GO:2001141
PFAM: PF00651.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG047157	XP_003608891.1	97.796	363	7	1	1	363	1	362	0.0	744

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG047157	sp\|Q94BN0\|BT2_ARATH	61.515	330	114	6	15	332	32	360	2.00e-132	385

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG047157	G7JMM8	97.796	363	7	1	1	363	1	362	0.0	744

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TFs/TRs:

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Gene ID	Type	Classification
MsaG047157	TR	TAZ

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000023	MsaG047157	0.837387	9.822200e-57	3.535374e-54
MsaG000049	MsaG047157	0.833215	1.098966e-55	3.491387e-53
MsaG000253	MsaG047157	0.835535	2.893263e-56	9.848071e-54
MsaG000286	MsaG047157	0.808130	6.130654e-50	1.000810e-47
MsaG000413	MsaG047157	0.872494	6.251091e-67	8.057391e-64
MsaG000472	MsaG047157	0.809446	3.217842e-50	5.422328e-48
MsaG000545	MsaG047157	0.855340	1.303155e-61	8.523032e-59
MsaG000549	MsaG047157	0.802934	7.452223e-49	1.077026e-46
MsaG000553	MsaG047157	0.812909	5.754990e-51	1.055636e-48
MsaG000621	MsaG047157	0.872496	6.238887e-67	8.042619e-64

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG047157	MtrunA17_Chr4g0058071	97.796	363	7	1	1	363	1	362	0.0	744
MsaG047157	MtrunA17_Chr3g0116501	58.621	203	81	2	87	289	1	200	1.57e-86	260
MsaG047157	MtrunA17_Chr5g0401281	45.973	298	154	7	18	313	68	360	1.56e-84	261

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG047157	AT3G48360.1	61.515	330	114	6	15	332	32	360	2.03e-133	385
MsaG047157	AT5G63160.1	62.540	315	108	5	14	319	22	335	2.64e-130	377
MsaG047157	AT3G48360.2	63.636	286	92	5	15	289	32	316	3.39e-120	351
MsaG047157	AT5G63160.2	63.732	284	94	4	14	289	22	304	3.16e-119	347
MsaG047157	AT5G63160.3	64.634	246	79	4	81	319	6	250	8.10e-104	307
MsaG047157	AT3G48360.3	62.745	255	85	4	87	332	1	254	1.59e-103	305
MsaG047157	AT5G67480.1	45.364	302	159	6	18	317	61	358	7.24e-83	257
MsaG047157	AT5G67480.3	45.364	302	159	6	18	317	61	358	7.24e-83	257
MsaG047157	AT5G67480.2	45.364	302	159	6	18	317	72	369	9.61e-83	257
MsaG047157	AT4G37610.1	42.904	303	164	8	18	317	56	352	6.86e-76	239

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Find 0 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Contig8	gene	449408	452987	449408	ID=MsaG047157
Contig8	mRNA	449408	452987	449408	ID=MsaT047157.1;Parent=MsaG047157
Contig8	exon	449408	449515	449408	ID=MsaT047157.1.exon1;Parent=MsaT047157.1
Contig8	CDS	449408	449515	449408	ID=cds.MsaT047157.1;Parent=MsaT047157.1
Contig8	exon	449615	449748	449615	ID=MsaT047157.1.exon2;Parent=MsaT047157.1
Contig8	CDS	449615	449748	449615	ID=cds.MsaT047157.1;Parent=MsaT047157.1
Contig8	exon	449837	450140	449837	ID=MsaT047157.1.exon3;Parent=MsaT047157.1
Contig8	CDS	449837	450140	449837	ID=cds.MsaT047157.1;Parent=MsaT047157.1
Contig8	exon	450302	450621	450302	ID=MsaT047157.1.exon4;Parent=MsaT047157.1
Contig8	CDS	450302	450621	450302	ID=cds.MsaT047157.1;Parent=MsaT047157.1
Contig8	exon	452762	452987	452762	ID=MsaT047157.1.exon5;Parent=MsaT047157.1
Contig8	CDS	452762	452987	452762	ID=cds.MsaT047157.1;Parent=MsaT047157.1

Gene Sequence

>MsaT047157.1

ATGGAAATGAATACCCAAACCACACCAATGGAGGTCGTCTTACCCGAATATGATGTCTTTATTCATACTTCTGATGGCACACGCATTCCAGCCCACACAAGCATCCTGGCCTCGGTATCTCCTGTTTTCGAGAACATTATTGATCAACCGCGTAAACAACGCAGCTCCGAAAGAATAATCCAAATTCACGGCGTTCCTTCCACCGCCGTAACCGCTTTCATCGGCTACCTCTACTCATCCAGTTGCACGGAGGATGAAATGGACAAATACGGAATCCACCTGTTGGCACTATCTCACGTGTACAATGTGCCGCAACTCAAACAAAGATGCATCAAAGGTCTTGTTCAACGGTTAACATCAGAAAACGTGGTGGATGTACTCCAACTCGCCAGGCTCTGCGATGCACCGGATCTCCGTATCCGTTGTATGAAGCTACTCACCAATCACTTCAACGCGGTTCAAAAAACTGAAGGGTGGAAGTTCCTCACCAAACATGATCCTGTGCTTGAACTTGATATCCTCCGCTTCATGGACGAAAGCGAAACAAGGAGAGAGAAATCGAGGAAGCATAGAGAGGAGCAAGGGTTGTATGCGGAACTTTCTGAGGCGATGGAGTGTTTGGAGCATATATGTACGGAAGGGTGCACCGACGTTGGACCATACCATGTTGAGGTTAATAAAGAAAAGAAACCGTGTAGCAAATTCTCCACCTGTCAAGGGCTTCAGCTTCTGATTCGTCATTTTGCAACATGCAAGAAGAGGGTGAAGGGAGGGTGCTGGAGGTGCAAACGTATGTGGCAGCTGTTTAGATTGCATTCGTATGTTTGCCAACAAACTGATGATTCTTGCAATGTTCCTCTTTGCAGACAATTTCAATTGAGAATGGAGCAAGAGAAAAGGAAAGATGATCCCAAATGGAAACTACTAGCAAGGAAGGTTGCCTCAGCTAAGGTTATGTTTTCCTTGTCTCTCCCTAAGAGAAAAAGAGATGAAGAAATGAGAGTGACCATAGACAATCGTGGGATCAGATGTTTTGGTTACAATGAATATTGTAACAATAATGTCTCGGACAATCGATGTGTTTCATGCTGA

Protein sequence

>MsaT047157.1

MEMNTQTTPMEVVLPEYDVFIHTSDGTRIPAHTSILASVSPVFENIIDQPRKQRSSERIIQIHGVPSTAVTAFIGYLYSSSCTEDEMDKYGIHLLALSHVYNVPQLKQRCIKGLVQRLTSENVVDVLQLARLCDAPDLRIRCMKLLTNHFNAVQKTEGWKFLTKHDPVLELDILRFMDESETRREKSRKHREEQGLYAELSEAMECLEHICTEGCTDVGPYHVEVNKEKKPCSKFSTCQGLQLLIRHFATCKKRVKGGCWRCKRMWQLFRLHSYVCQQTDDSCNVPLCRQFQLRMEQEKRKDDPKWKLLARKVASAKVMFSLSLPKRKRDEEMRVTIDNRGIRCFGYNEYCNNNVSDNRCVSC*