AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG047157


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG047157 MtrunA17_Chr4g0058071 97.796 363 7 1 1 363 1 362 0.0 744
MsaG047157 MtrunA17_Chr3g0116501 58.621 203 81 2 87 289 1 200 1.57e-86 260
MsaG047157 MtrunA17_Chr5g0401281 45.973 298 154 7 18 313 68 360 1.56e-84 261
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG047157 AT3G48360.1 61.515 330 114 6 15 332 32 360 2.03e-133 385
MsaG047157 AT5G63160.1 62.540 315 108 5 14 319 22 335 2.64e-130 377
MsaG047157 AT3G48360.2 63.636 286 92 5 15 289 32 316 3.39e-120 351
MsaG047157 AT5G63160.2 63.732 284 94 4 14 289 22 304 3.16e-119 347
MsaG047157 AT5G63160.3 64.634 246 79 4 81 319 6 250 8.10e-104 307
MsaG047157 AT3G48360.3 62.745 255 85 4 87 332 1 254 1.59e-103 305
MsaG047157 AT5G67480.1 45.364 302 159 6 18 317 61 358 7.24e-83 257
MsaG047157 AT5G67480.3 45.364 302 159 6 18 317 61 358 7.24e-83 257
MsaG047157 AT5G67480.2 45.364 302 159 6 18 317 72 369 9.61e-83 257
MsaG047157 AT4G37610.1 42.904 303 164 8 18 317 56 352 6.86e-76 239
MsaG047157 AT1G05690.1 41.528 301 170 5 18 317 55 350 1.82e-74 235
MsaG047157 AT1G55760.1 33.835 133 79 4 18 147 165 291 6.35e-13 69.3
MsaG047157 AT3G56230.1 24.845 161 120 1 25 184 120 280 2.11e-12 67.4

Find 0 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Contig8 gene 449408 452987 449408 ID=MsaG047157
Contig8 mRNA 449408 452987 449408 ID=MsaT047157.1;Parent=MsaG047157
Contig8 exon 449408 449515 449408 ID=MsaT047157.1.exon1;Parent=MsaT047157.1
Contig8 CDS 449408 449515 449408 ID=cds.MsaT047157.1;Parent=MsaT047157.1
Contig8 exon 449615 449748 449615 ID=MsaT047157.1.exon2;Parent=MsaT047157.1
Contig8 CDS 449615 449748 449615 ID=cds.MsaT047157.1;Parent=MsaT047157.1
Contig8 exon 449837 450140 449837 ID=MsaT047157.1.exon3;Parent=MsaT047157.1
Contig8 CDS 449837 450140 449837 ID=cds.MsaT047157.1;Parent=MsaT047157.1
Contig8 exon 450302 450621 450302 ID=MsaT047157.1.exon4;Parent=MsaT047157.1
Contig8 CDS 450302 450621 450302 ID=cds.MsaT047157.1;Parent=MsaT047157.1
Contig8 exon 452762 452987 452762 ID=MsaT047157.1.exon5;Parent=MsaT047157.1
Contig8 CDS 452762 452987 452762 ID=cds.MsaT047157.1;Parent=MsaT047157.1
Gene Sequence

>MsaT047157.1

ATGGAAATGAATACCCAAACCACACCAATGGAGGTCGTCTTACCCGAATATGATGTCTTTATTCATACTTCTGATGGCACACGCATTCCAGCCCACACAAGCATCCTGGCCTCGGTATCTCCTGTTTTCGAGAACATTATTGATCAACCGCGTAAACAACGCAGCTCCGAAAGAATAATCCAAATTCACGGCGTTCCTTCCACCGCCGTAACCGCTTTCATCGGCTACCTCTACTCATCCAGTTGCACGGAGGATGAAATGGACAAATACGGAATCCACCTGTTGGCACTATCTCACGTGTACAATGTGCCGCAACTCAAACAAAGATGCATCAAAGGTCTTGTTCAACGGTTAACATCAGAAAACGTGGTGGATGTACTCCAACTCGCCAGGCTCTGCGATGCACCGGATCTCCGTATCCGTTGTATGAAGCTACTCACCAATCACTTCAACGCGGTTCAAAAAACTGAAGGGTGGAAGTTCCTCACCAAACATGATCCTGTGCTTGAACTTGATATCCTCCGCTTCATGGACGAAAGCGAAACAAGGAGAGAGAAATCGAGGAAGCATAGAGAGGAGCAAGGGTTGTATGCGGAACTTTCTGAGGCGATGGAGTGTTTGGAGCATATATGTACGGAAGGGTGCACCGACGTTGGACCATACCATGTTGAGGTTAATAAAGAAAAGAAACCGTGTAGCAAATTCTCCACCTGTCAAGGGCTTCAGCTTCTGATTCGTCATTTTGCAACATGCAAGAAGAGGGTGAAGGGAGGGTGCTGGAGGTGCAAACGTATGTGGCAGCTGTTTAGATTGCATTCGTATGTTTGCCAACAAACTGATGATTCTTGCAATGTTCCTCTTTGCAGACAATTTCAATTGAGAATGGAGCAAGAGAAAAGGAAAGATGATCCCAAATGGAAACTACTAGCAAGGAAGGTTGCCTCAGCTAAGGTTATGTTTTCCTTGTCTCTCCCTAAGAGAAAAAGAGATGAAGAAATGAGAGTGACCATAGACAATCGTGGGATCAGATGTTTTGGTTACAATGAATATTGTAACAATAATGTCTCGGACAATCGATGTGTTTCATGCTGA

Protein sequence

>MsaT047157.1

MEMNTQTTPMEVVLPEYDVFIHTSDGTRIPAHTSILASVSPVFENIIDQPRKQRSSERIIQIHGVPSTAVTAFIGYLYSSSCTEDEMDKYGIHLLALSHVYNVPQLKQRCIKGLVQRLTSENVVDVLQLARLCDAPDLRIRCMKLLTNHFNAVQKTEGWKFLTKHDPVLELDILRFMDESETRREKSRKHREEQGLYAELSEAMECLEHICTEGCTDVGPYHVEVNKEKKPCSKFSTCQGLQLLIRHFATCKKRVKGGCWRCKRMWQLFRLHSYVCQQTDDSCNVPLCRQFQLRMEQEKRKDDPKWKLLARKVASAKVMFSLSLPKRKRDEEMRVTIDNRGIRCFGYNEYCNNNVSDNRCVSC*