AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG047188


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG047188 MtrunA17_Chr3g0093911 56.316 190 38 6 146 292 163 350 8.09e-56 184
MsaG047188 MtrunA17_Chr1g0207351 58.286 175 30 4 161 292 192 366 1.66e-55 183
MsaG047188 MtrunA17_Chr7g0252101 56.069 173 33 4 163 292 260 432 3.55e-50 171
MsaG047188 MtrunA17_Chr7g0252101 55.789 95 36 1 65 159 27 115 1.09e-23 99.8
MsaG047188 MtrunA17_Chr1g0202841 51.955 179 40 6 159 292 2 179 2.36e-48 159
MsaG047188 MtrunA17_Chr1g0209051 51.445 173 41 4 162 291 98 270 1.49e-47 160
MsaG047188 MtrunA17_Chr3g0077801 49.123 171 40 4 164 289 181 349 3.73e-40 143
MsaG047188 MtrunA17_Chr1g0209191 67.347 98 22 2 204 291 1 98 7.09e-39 132
MsaG047188 MtrunA17_Chr4g0075971 49.412 170 43 5 165 292 434 602 1.23e-38 143
MsaG047188 MtrunA17_Chr4g0075971 51.485 101 42 2 64 158 184 283 9.28e-20 89.4
MsaG047188 MtrunA17_Chr1g0196241 73.864 88 19 2 193 276 1 88 7.73e-37 126
MsaG047188 MtrunA17_Chr7g0243331 48.824 170 45 5 165 292 181 350 1.29e-36 133
MsaG047188 MtrunA17_Chr3g0077901 46.784 171 48 4 164 291 201 371 2.53e-35 130
MsaG047188 MtrunA17_Chr3g0077851 45.614 171 50 3 164 291 165 335 3.38e-35 129
MsaG047188 MtrunA17_Chr6g0488101 43.169 183 48 6 164 292 275 455 3.02e-33 126
MsaG047188 MtrunA17_Chr6g0488101 39.048 105 53 3 65 159 27 130 7.15e-13 68.6
MsaG047188 MtrunA17_Chr6g0486591 44.737 152 58 5 166 292 9 159 8.99e-33 118
MsaG047188 MtrunA17_Chr6g0488271 42.308 182 51 5 164 292 235 415 9.60e-33 124
MsaG047188 MtrunA17_Chr6g0488271 41.758 91 43 2 78 159 1 90 6.28e-13 68.6
MsaG047188 MtrunA17_Chr3g0123471 42.077 183 56 5 146 284 83 259 2.21e-32 120
MsaG047188 MtrunA17_Chr6g0452641 43.169 183 48 6 164 292 160 340 2.25e-32 122
MsaG047188 MtrunA17_Chr3g0112311 43.820 178 49 6 164 290 178 355 1.02e-31 120
MsaG047188 MtrunA17_Chr1g0187941 42.963 135 35 3 161 253 3 137 5.86e-23 92.0
MsaG047188 MtrunA17_Chr3g0122991 55.128 78 33 1 184 259 197 274 2.22e-20 88.6
MsaG047188 MtrunA17_Chr1g0209061 55.789 95 21 4 72 163 30 106 4.37e-20 83.6
MsaG047188 MtrunA17_Chr4g0075861 50.495 101 43 2 64 158 184 283 1.95e-18 84.3
MsaG047188 MtrunA17_Chr1g0206781 53.571 56 26 0 64 119 23 78 1.86e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 0 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Contig17 gene 51595 55410 51595 ID=MsaG047188
Contig17 mRNA 51595 55410 51595 ID=MsaT047188.1;Parent=MsaG047188
Contig17 exon 51595 51920 51595 ID=MsaT047188.1.exon5;Parent=MsaT047188.1
Contig17 CDS 51595 51920 51595 ID=cds.MsaT047188.1;Parent=MsaT047188.1
Contig17 exon 52022 52099 52022 ID=MsaT047188.1.exon4;Parent=MsaT047188.1
Contig17 CDS 52022 52099 52022 ID=cds.MsaT047188.1;Parent=MsaT047188.1
Contig17 exon 52537 52638 52537 ID=MsaT047188.1.exon3;Parent=MsaT047188.1
Contig17 CDS 52537 52638 52537 ID=cds.MsaT047188.1;Parent=MsaT047188.1
Contig17 exon 53917 54111 53917 ID=MsaT047188.1.exon2;Parent=MsaT047188.1
Contig17 CDS 53917 54111 53917 ID=cds.MsaT047188.1;Parent=MsaT047188.1
Contig17 exon 55233 55410 55233 ID=MsaT047188.1.exon1;Parent=MsaT047188.1
Contig17 CDS 55233 55410 55233 ID=cds.MsaT047188.1;Parent=MsaT047188.1
Gene Sequence

>MsaT047188.1

ATGTCTCACCAAGCAAATGCCGCTACGATAATAAATGCTCGTCGACACGGAAAGTTCAAGATGGAGAAAGCTTCTTACTTCAATCGTACGGTGGCACGCTTCTCCGACAAAGCTTTGTATTTGGAGTTTTGTTTTCTCCGCGATACCTCATTTGTTGCGCCGCCAACGCCGCCGCAAGATCCCCAGAACTACCATGACGAGGCAGTACAAGCTAATGAGGTTTTAAAAGTCCTAAAAGATGTGAAGGATCAAAGAATTTATACAAGAGGTGCTGCGGCAAGAGTCAAGGAGCTGCTTGAAGGGCATACTCATTTAATTTTGAGATTCAATACCTTCCTGCCAAAGGAACATCAAATCAAACTTGAGACCACTGGGAAAAAGGTGAAGAAGGTAGAAGAGAACCGTGAACTTCCTTTGGATGTGCTTGATATCATTTCCCAAACACTAGATTTTGTCGACCTTTTTCAATTTGCCGGAAATGAACGGGGGAGGGTGGTTGACTTTGTGGTCTTGCATAATATAATATATGTTGTCACTACCAAGGCCAACATAGTGGTTGATTTAAGGTTCGACGAAGTAAGGAATGTGTACAAGATAGATTTCTCAACCATGAATTATGTCAAACTGGAGACTTTGGGCGACATTGCATTATTTTATGCTTTGGACAGAAATTTTTATGCATTGAGCAACCCAAATAGGTGGGGATATGAGAGCAACTCTATGTATGCACTGGGAAATCCTTTATGTAGTGTTTATTCAGGGGATGATAAAAAGTTGCAAAAATTGATTACGCTTCCAACTCAAGGAGCAAGTTCCTTCATGTTGGATTGGTGTTTTAGACATCTACAATATGAGGTAGATTATTCTCTAGTCGAGTGA

Protein sequence

>MsaT047188.1

MSHQANAATIINARRHGKFKMEKASYFNRTVARFSDKALYLEFCFLRDTSFVAPPTPPQDPQNYHDEAVQANEVLKVLKDVKDQRIYTRGAAARVKELLEGHTHLILRFNTFLPKEHQIKLETTGKKVKKVEENRELPLDVLDIISQTLDFVDLFQFAGNERGRVVDFVVLHNIIYVVTTKANIVVDLRFDEVRNVYKIDFSTMNYVKLETLGDIALFYALDRNFYALSNPNRWGYESNSMYALGNPLCSVYSGDDKKLQKLITLPTQGASSFMLDWCFRHLQYEVDYSLVE*