AlfalfaGEDB | Msa0000010

M. sativa cultivar zhongmu-4 / Msa0000010

KEGG: -
GO: GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF01453.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0000010	sp\|O64793\|Y1675_ARATH	37.634	744	350	17	88	749	79	790	4.72e-137	428

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0000010	MtrunA17_Chr8g0357711	78.298	811	126	7	1	776	1	796	1246
Msa0000010	MtrunA17_Chr8g0357761	78.571	812	125	7	1	776	1	799	1239
Msa0000010	MtrunA17_Chr8g0357631	75.713	807	145	6	1	776	1	787	1214
Msa0000010	MtrunA17_Chr8g0357651	75.619	808	146	8	1	776	1	789	1183
Msa0000010	MtrunA17_Chr8g0357691	64.118	811	236	12	1	774	2	794	984
Msa0000010	MtrunA17_Chr8g0357831	83.205	518	64	2	256	773	1	495	877
Msa0000010	MtrunA17_Chr8g0358071	52.593	810	315	18	1	765	1	786	786
Msa0000010	MtrunA17_Chr8g0358031	52.572	797	316	14	1	755	1	777	776
Msa0000010	MtrunA17_Chr8g0358101	52.750	800	300	18	8	764	7	771	768
Msa0000010	MtrunA17_Chr8g0357961	51.911	811	304	20	15	765	10	794	767

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0000010	AT3G16030.6	37.452	777	365	20	79	747	77	840	1.27e-138	431
Msa0000010	AT3G16030.2	39.385	683	326	17	141	747	26	696	7.37e-138	424
Msa0000010	AT3G16030.1	37.778	765	352	21	88	747	74	819	2.99e-137	427
Msa0000010	AT1G67520.3	37.366	744	352	17	88	749	79	790	5.37e-137	425
Msa0000010	AT1G67520.6	37.366	744	352	17	88	749	86	797	1.03e-136	424
Msa0000010	AT1G67520.4	37.057	734	325	16	88	749	79	747	3.23e-134	416
Msa0000010	AT4G21380.1	50.000	458	195	9	305	744	374	815	1.12e-131	412
Msa0000010	AT1G65800.1	48.802	459	205	8	305	747	372	816	1.33e-131	412
Msa0000010	AT1G67520.5	46.429	476	207	8	308	749	92	553	2.42e-131	403
Msa0000010	AT1G67520.8	46.429	476	207	8	308	749	121	582	8.70e-131	402

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Find 151 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTACCTGTATCTAACA+AGG	0.663710	1_1:-595226	None:intergenic
AAACGCTTTAACATAATAGA+AGG	0.429330	1_1:+597598	Msa0000010:CDS
AAACTGAAGCAAATACCAAC+AGG	0.503338	1_1:+597767	Msa0000010:CDS
AAAGGAAATAATGATATTAT+AGG	0.260900	1_1:+598619	Msa0000010:three_prime_UTR
AAATGGACTCTATTAGAAAC+TGG	0.296765	1_1:+595608	Msa0000010:CDS
AACATGGTTTGCAGTGAAAA+AGG	0.214856	1_1:+594808	None:intergenic
AACCCTAAAATTTCTGATTT+TGG	0.088638	1_1:+597718	Msa0000010:CDS
AACTGGTCATAAATGGTCAC+TGG	0.545924	1_1:+595352	Msa0000010:CDS
AAGAAACCAGCATACTATGG+TGG	0.667087	1_1:+598335	Msa0000010:CDS
AAGAACACCAACGATCACAA+AGG	0.684897	1_1:+595974	Msa0000010:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTACTATTGTTAAAAGGTTG+AGG	-	chr1_1:595195-595214	None:intergenic	30.0%
ATCACAAAACTGGTCATAAA+TGG	+	chr1_1:595345-595364	Msa0000010:CDS	30.0%
TATATCTGGAGAAGACTTTA+AGG	+	chr1_1:595517-595536	Msa0000010:CDS	30.0%
AGTTTCTAATAGAGTCCATT+TGG	-	chr1_1:595609-595628	None:intergenic	30.0%
TATGGGTATAACACTAATGA+TGG	+	chr1_1:595680-595699	Msa0000010:CDS	30.0%
CAGATAGAAAATGCTAGTTA+CGG	+	chr1_1:595800-595819	Msa0000010:CDS	30.0%
GTAATCTTGCAATCAACTAA+AGG	+	chr1_1:595905-595924	Msa0000010:CDS	30.0%
AGATATCCATTCATTGAAGT+TGG	-	chr1_1:596083-596102	None:intergenic	30.0%
TAACCCGCATTAAAAATGTT+AGG	-	chr1_1:596145-596164	None:intergenic	30.0%
TAGTAGTAGAGAAATCGAAT+AGG	+	chr1_1:596205-596224	Msa0000010:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	594811	598695	594811	ID=Msa0000010;Name=Msa0000010
chr1_1	mRNA	594811	598695	594811	ID=Msa0000010-mRNA-1;Parent=Msa0000010;Name=Msa0000010-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0\|0.85\|0.75\|1\|1\|1\|8\|247\|776
chr1_1	exon	594811	595240	594811	ID=Msa0000010-mRNA-1:exon:6;Parent=Msa0000010-mRNA-1
chr1_1	exon	595339	595995	595339	ID=Msa0000010-mRNA-1:exon:7;Parent=Msa0000010-mRNA-1
chr1_1	exon	596542	596676	596542	ID=Msa0000010-mRNA-1:exon:8;Parent=Msa0000010-mRNA-1
chr1_1	exon	596764	596963	596764	ID=Msa0000010-mRNA-1:exon:9;Parent=Msa0000010-mRNA-1
chr1_1	exon	597068	597278	597068	ID=Msa0000010-mRNA-1:exon:10;Parent=Msa0000010-mRNA-1
chr1_1	exon	597566	597803	597566	ID=Msa0000010-mRNA-1:exon:11;Parent=Msa0000010-mRNA-1
chr1_1	exon	597902	598052	597902	ID=Msa0000010-mRNA-1:exon:12;Parent=Msa0000010-mRNA-1
chr1_1	exon	598140	598695	598140	ID=Msa0000010-mRNA-1:exon:13;Parent=Msa0000010-mRNA-1
chr1_1	CDS	594811	595240	594811	ID=Msa0000010-mRNA-1:cds;Parent=Msa0000010-mRNA-1
chr1_1	CDS	595339	595995	595339	ID=Msa0000010-mRNA-1:cds;Parent=Msa0000010-mRNA-1
chr1_1	CDS	596542	596676	596542	ID=Msa0000010-mRNA-1:cds;Parent=Msa0000010-mRNA-1
chr1_1	CDS	596764	596963	596764	ID=Msa0000010-mRNA-1:cds;Parent=Msa0000010-mRNA-1
chr1_1	CDS	597068	597278	597068	ID=Msa0000010-mRNA-1:cds;Parent=Msa0000010-mRNA-1
chr1_1	CDS	597566	597803	597566	ID=Msa0000010-mRNA-1:cds;Parent=Msa0000010-mRNA-1
chr1_1	CDS	597902	598052	597902	ID=Msa0000010-mRNA-1:cds;Parent=Msa0000010-mRNA-1
chr1_1	CDS	598140	598448	598140	ID=Msa0000010-mRNA-1:cds;Parent=Msa0000010-mRNA-1
chr1_1	three_prime_UTR	598449	598695	598449	ID=Msa0000010-mRNA-1:three_prime_utr;Parent=Msa0000010-mRNA-1

Gene Sequence

>Msa0000010

ATGGTTTGCAGTGAAAAAGGGAAACCTCAACTTTTGCTTCTCTTCACATACATTTCCTTGTGGTGGTGGTATACTAATATTTCTACCTATGTCAAAGCAGAAATTATTTATAGTATGAAGCCAGGAGATAAAATGAATGCCGGTGCCACATCCAGGTTGTGTTCTAAACAAGATAGATACTGCATGAATTTTAACCAAAATCCGGATCCTCAAAACCTCACTTATCTCTGCATATTTGGCCAAGGGAAAGATAGTTGGTTAGTATGGATTGCTAACAGAAACCAAAGTGTTGACAAAAATTCAGCAATTCTATCACTAGACTACTCTGGTGTGCTAAAAATAGAATCAAAAATTGGTGAACCAATAATCCTGTATGCTTCACCTCAACCTTTTAACAATAGTACTGTTGTTGCCACCTTGTTAGATACAGGTGTGAATCACAAAACTGGTCATAAATGGTCACTGGTTTCAAGCATCAGTGGTTCAATCCCAGCTCCTGGTCCATTCAGGCTTGATTGGGAACCCACAAGAAAAGAATTGGTCATCAAGCGTAGAGAAAAGGTTTATTGGACAAGTGGAAAACTGCTGATAAACAATATATTTGAGTATATATCTGGAGAAGACTTTAAGGTCAAAGTTGTGTCTAATGAGGAAGAAGAATACTTCTCATACACAACTCCAAATGAAGACGGTCTTACCAAATGGACTCTATTAGAAACTGGGCAGCTGATAAACAAAGCAGGAAGTGACATAGCAAGGGCTGATATGTGTTATGGGTATAACACTAATGATGGATGCCAAAAATGGGGTGAAGCAGAGATACCTACTTGCAGGAATGCTGGTGATAAGTTCGATGGCAAGATAGGTTACCCGAATGAAAATATGGTATACCAGATAGAAAATGCTAGTTACGGCATAGGTGATTGCCAAGCTAATTGCTGGAGTAACTGCAGCTGCTTTGGATTCAAAAGCTTGTATGATAATGGAACTGGTTGTGTAATCTTGCAATCAACTAAAGGTCTAAACATTGCAAGCAGTGGTGATTACTTGTTTTATATTCTAGTTAAGAACACCAACGATCACAAAGAAATTAAGTTATCCAAGGGAGGTAACAATAACAGCAAGTGGATATGGATTTCCGTTGGAATGGGGACTGTTCTACTCATTATTGGTCTTTCCATTCTGTTTCGAGCCTTAAGGAAACAAAAATATGTGCTTCAAGAGAAGGAACGGATGAGAATTCAGATTGAGATTCAAGATCTTGAAGGTTCTAGGCGATACTCTGATAGCGATGATCTAGAAGGCGATTTAAGCACAAGAGATGACTTAAAAGTGTTTACCTATTCATCGATAATTATGGCTACCAATGGCTTTTCTCCTGAAAACAAGCTAGGACAGGGTGGCTTTGGACCTGTTTTTAAGGGAATTCTACCTTCAGGGCAAGAAGTAGCTGTGAAGAAACTTTCAAAAACATCTGGACAAGGAATGACTGAGTTTAGAAATGAATTAACACTTATTTGCAAGCTTCAGCATACAAATCTTGTTCAACTAATCGGTCATTGCATTCATGAACAAGAGAGAATGTTGATCTATGAATATATGTCCAACAAAAGCTTGGACTTCTTTTTATTTGATTCCACTAGAAGAAAGTTCCTAAATTGGAACAAACGCTTTAACATAATAGAAGGAATTGCTCAAGGATTACTATATCTTCACAAATACTCAAGACTCAGAATTATTCACAGAGATTTGAAGGCTAGTAATATTCTTTTAGATGAATATATGAACCCTAAAATTTCTGATTTTGGTGTGGCAAGAATGTTCACAAAACAAGAAACTGAAGCAAATACCAACAGGATAGTCGGGACATATGGTTACATGTCTCCAGAGTATGCAATGGAAGGAGTTTTTTCTACAAAGTCCGATGTGTACAGCTTTGGAGTCCTGCTCCTTGAAATTATTAGTGGTGAAAAATGCAATAGCATGTACTGTGAAGACAGACCACTTAATCTAGTTGGACATGCATGGGAGCTATGGAAAGAAGGTGTGGTTCTTCAGTTGGTGGATCCATTACTAAATGAGTCTTTTTCTGAGGATGAGGTGCTAAGATGTGTTCATATAGGTTTATTATGCGTAGAAGAAAATGCCGATGATCGTCCGACAATGTCCAATGTAATATCAATGTTAACTAACAAAATTAAAGTCGATGTTTTGCCTAAGAAACCAGCATACTATGGTGGAACAAGAGTTTTTGATGAAGAAACGTATGGTGAAGAAGTTGGTGTGTATTCCACGTATGAAAACCCTCATTCACATTTACAATCATTATAG

Protein sequence

>Msa0000010

MVCSEKGKPQLLLLFTYISLWWWYTNISTYVKAEIIYSMKPGDKMNAGATSRLCSKQDRYCMNFNQNPDPQNLTYLCIFGQGKDSWLVWIANRNQSVDKNSAILSLDYSGVLKIESKIGEPIILYASPQPFNNSTVVATLLDTGVNHKTGHKWSLVSSISGSIPAPGPFRLDWEPTRKELVIKRREKVYWTSGKLLINNIFEYISGEDFKVKVVSNEEEEYFSYTTPNEDGLTKWTLLETGQLINKAGSDIARADMCYGYNTNDGCQKWGEAEIPTCRNAGDKFDGKIGYPNENMVYQIENASYGIGDCQANCWSNCSCFGFKSLYDNGTGCVILQSTKGLNIASSGDYLFYILVKNTNDHKEIKLSKGGNNNSKWIWISVGMGTVLLIIGLSILFRALRKQKYVLQEKERMRIQIEIQDLEGSRRYSDSDDLEGDLSTRDDLKVFTYSSIIMATNGFSPENKLGQGGFGPVFKGILPSGQEVAVKKLSKTSGQGMTEFRNELTLICKLQHTNLVQLIGHCIHEQERMLIYEYMSNKSLDFFLFDSTRRKFLNWNKRFNIIEGIAQGLLYLHKYSRLRIIHRDLKASNILLDEYMNPKISDFGVARMFTKQETEANTNRIVGTYGYMSPEYAMEGVFSTKSDVYSFGVLLLEIISGEKCNSMYCEDRPLNLVGHAWELWKEGVVLQLVDPLLNESFSEDEVLRCVHIGLLCVEENADDRPTMSNVISMLTNKIKVDVLPKKPAYYGGTRVFDEETYGEEVGVYSTYENPHSHLQSL*