Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0000450 | sp|Q8VWG3|TT1_ARATH | 66.010 | 203 | 54 | 2 | 18 | 205 | 83 | 285 | 2.65e-95 | 283 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0000450 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0000450 | MtrunA17_Chr4g0053341 | 97.115 | 208 | 6 | 0 | 3 | 210 | 25 | 232 | 2.53e-154 | 426 |
| Msa0000450 | MtrunA17_Chr8g0352011 | 68.750 | 208 | 45 | 3 | 16 | 203 | 110 | 317 | 4.30e-99 | 291 |
| Msa0000450 | MtrunA17_Chr1g0173841 | 63.636 | 220 | 48 | 3 | 16 | 203 | 147 | 366 | 2.42e-94 | 280 |
| Msa0000450 | MtrunA17_Chr5g0422571 | 65.672 | 201 | 61 | 3 | 13 | 207 | 59 | 257 | 3.57e-94 | 276 |
| Msa0000450 | MtrunA17_Chr2g0321291 | 60.360 | 222 | 71 | 2 | 4 | 208 | 68 | 289 | 5.50e-93 | 274 |
| Msa0000450 | MtrunA17_Chr7g0258011 | 63.810 | 210 | 52 | 1 | 18 | 203 | 118 | 327 | 7.50e-93 | 275 |
| Msa0000450 | MtrunA17_Chr2g0328921 | 66.337 | 202 | 54 | 3 | 16 | 203 | 88 | 289 | 1.01e-91 | 271 |
| Msa0000450 | MtrunA17_Chr4g0026521 | 62.944 | 197 | 63 | 1 | 19 | 205 | 75 | 271 | 2.01e-88 | 262 |
| Msa0000450 | MtrunA17_Chr1g0198651 | 67.816 | 174 | 51 | 2 | 39 | 207 | 87 | 260 | 2.84e-85 | 254 |
| Msa0000450 | MtrunA17_Chr1g0200421 | 37.615 | 218 | 109 | 9 | 3 | 202 | 184 | 392 | 1.47e-30 | 117 |
| Msa0000450 | MtrunA17_Chr2g0320341 | 37.255 | 153 | 87 | 5 | 58 | 203 | 238 | 388 | 1.71e-24 | 99.4 |
| Msa0000450 | MtrunA17_Chr8g0382121 | 38.411 | 151 | 85 | 6 | 57 | 202 | 118 | 265 | 5.26e-21 | 88.6 |
| Msa0000450 | MtrunA17_Chr1g0181381 | 33.113 | 151 | 92 | 4 | 47 | 196 | 49 | 191 | 2.14e-20 | 88.6 |
| Msa0000450 | MtrunA17_Chr4g0029521 | 34.211 | 152 | 89 | 5 | 47 | 196 | 49 | 191 | 4.68e-20 | 87.4 |
| Msa0000450 | MtrunA17_Chr2g0324991 | 36.054 | 147 | 84 | 5 | 47 | 191 | 3 | 141 | 8.45e-20 | 82.0 |
| Msa0000450 | MtrunA17_Chr7g0263941 | 35.099 | 151 | 88 | 5 | 47 | 196 | 45 | 186 | 9.80e-20 | 86.3 |
| Msa0000450 | MtrunA17_Chr2g0326381 | 34.868 | 152 | 88 | 5 | 47 | 196 | 43 | 185 | 1.12e-19 | 86.3 |
| Msa0000450 | MtrunA17_Chr1g0185121 | 34.194 | 155 | 91 | 5 | 44 | 196 | 48 | 193 | 1.60e-19 | 85.9 |
| Msa0000450 | MtrunA17_Chr1g0210821 | 33.775 | 151 | 90 | 4 | 47 | 196 | 55 | 196 | 2.41e-19 | 85.5 |
| Msa0000450 | MtrunA17_Chr1g0162971 | 34.437 | 151 | 89 | 4 | 47 | 196 | 52 | 193 | 3.29e-19 | 85.1 |
| Msa0000450 | MtrunA17_Chr1g0163001 | 33.775 | 151 | 90 | 4 | 47 | 196 | 54 | 195 | 4.59e-19 | 84.7 |
| Msa0000450 | MtrunA17_Chr1g0199101 | 35.099 | 151 | 88 | 5 | 47 | 196 | 58 | 199 | 4.94e-19 | 84.7 |
| Msa0000450 | MtrunA17_Chr8g0342421 | 32.911 | 158 | 95 | 5 | 41 | 196 | 66 | 214 | 7.42e-19 | 84.0 |
| Msa0000450 | MtrunA17_Chr1g0151351 | 32.895 | 152 | 91 | 5 | 47 | 196 | 52 | 194 | 1.38e-18 | 83.2 |
| Msa0000450 | MtrunA17_Chr4g0040571 | 33.544 | 158 | 94 | 5 | 41 | 196 | 43 | 191 | 1.62e-18 | 83.2 |
| Msa0000450 | MtrunA17_Chr8g0373541 | 33.113 | 151 | 91 | 4 | 47 | 196 | 44 | 185 | 2.51e-18 | 82.4 |
| Msa0000450 | MtrunA17_Chr1g0191991 | 33.544 | 158 | 94 | 5 | 41 | 196 | 67 | 215 | 4.97e-18 | 81.6 |
| Msa0000450 | MtrunA17_Chr2g0330171 | 32.911 | 158 | 95 | 5 | 41 | 196 | 50 | 198 | 5.46e-18 | 81.6 |
| Msa0000450 | MtrunA17_Chr7g0268961 | 32.895 | 152 | 84 | 6 | 53 | 196 | 33 | 174 | 1.26e-17 | 80.5 |
| Msa0000450 | MtrunA17_Chr3g0123941 | 36.000 | 150 | 87 | 7 | 57 | 202 | 130 | 274 | 9.38e-17 | 77.4 |
| Msa0000450 | MtrunA17_Chr3g0141431 | 31.081 | 148 | 92 | 4 | 47 | 192 | 33 | 172 | 8.68e-16 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0000450 | AT1G34790.1 | 66.010 | 203 | 54 | 2 | 18 | 205 | 83 | 285 | 2.69e-96 | 283 |
| Msa0000450 | AT3G57670.1 | 69.832 | 179 | 54 | 0 | 25 | 203 | 177 | 355 | 3.25e-91 | 272 |
| Msa0000450 | AT1G51220.1 | 76.250 | 160 | 38 | 0 | 50 | 209 | 163 | 322 | 2.10e-90 | 269 |
| Msa0000450 | AT3G20880.1 | 58.636 | 220 | 56 | 2 | 17 | 202 | 175 | 393 | 3.57e-89 | 268 |
| Msa0000450 | AT1G13290.1 | 65.128 | 195 | 58 | 4 | 18 | 206 | 54 | 244 | 2.26e-87 | 260 |
| Msa0000450 | AT1G08290.1 | 74.675 | 154 | 38 | 1 | 50 | 202 | 165 | 318 | 5.40e-85 | 255 |
| Msa0000450 | AT1G34370.3 | 41.667 | 168 | 87 | 6 | 44 | 202 | 12 | 177 | 1.73e-30 | 114 |
| Msa0000450 | AT1G34370.2 | 37.500 | 200 | 114 | 6 | 12 | 202 | 190 | 387 | 8.69e-30 | 115 |
| Msa0000450 | AT1G34370.1 | 37.500 | 200 | 114 | 6 | 12 | 202 | 190 | 387 | 8.69e-30 | 115 |
| Msa0000450 | AT5G22890.1 | 37.580 | 157 | 89 | 5 | 58 | 207 | 211 | 365 | 4.66e-24 | 98.2 |
| Msa0000450 | AT5G03150.1 | 34.437 | 151 | 90 | 4 | 47 | 196 | 64 | 206 | 7.32e-21 | 90.1 |
| Msa0000450 | AT5G44160.1 | 34.810 | 158 | 92 | 5 | 41 | 196 | 41 | 189 | 9.11e-20 | 87.0 |
| Msa0000450 | AT5G44160.2 | 34.437 | 151 | 89 | 4 | 47 | 196 | 9 | 150 | 1.49e-19 | 86.3 |
| Msa0000450 | AT2G02080.1 | 33.333 | 183 | 103 | 6 | 19 | 196 | 38 | 206 | 1.52e-19 | 86.7 |
| Msa0000450 | AT2G02080.4 | 33.333 | 183 | 103 | 6 | 19 | 196 | 38 | 206 | 1.52e-19 | 86.7 |
| Msa0000450 | AT2G02080.5 | 33.333 | 183 | 103 | 6 | 19 | 196 | 38 | 206 | 1.52e-19 | 86.7 |
| Msa0000450 | AT2G02080.3 | 33.333 | 183 | 103 | 6 | 19 | 196 | 38 | 206 | 1.52e-19 | 86.7 |
| Msa0000450 | AT5G60470.3 | 35.484 | 155 | 89 | 5 | 41 | 192 | 44 | 190 | 1.83e-19 | 86.3 |
| Msa0000450 | AT5G60470.2 | 35.484 | 155 | 89 | 5 | 41 | 192 | 48 | 194 | 1.92e-19 | 85.9 |
| Msa0000450 | AT1G14580.3 | 32.258 | 186 | 115 | 5 | 12 | 196 | 44 | 219 | 2.24e-19 | 85.9 |
| Msa0000450 | AT1G14580.1 | 32.258 | 186 | 115 | 5 | 12 | 196 | 30 | 205 | 2.25e-19 | 85.9 |
| Msa0000450 | AT1G14580.2 | 32.258 | 186 | 115 | 5 | 12 | 196 | 30 | 205 | 2.25e-19 | 85.9 |
| Msa0000450 | AT5G60470.1 | 35.135 | 148 | 86 | 4 | 47 | 192 | 46 | 185 | 2.75e-19 | 85.5 |
| Msa0000450 | AT1G55110.3 | 33.548 | 155 | 92 | 5 | 44 | 196 | 71 | 216 | 5.11e-19 | 84.7 |
| Msa0000450 | AT1G55110.1 | 33.548 | 155 | 92 | 5 | 44 | 196 | 71 | 216 | 5.11e-19 | 84.7 |
| Msa0000450 | AT1G55110.2 | 33.548 | 155 | 92 | 5 | 44 | 196 | 71 | 216 | 5.11e-19 | 84.7 |
| Msa0000450 | AT2G02070.2 | 34.932 | 146 | 85 | 4 | 52 | 196 | 68 | 204 | 5.63e-19 | 85.1 |
| Msa0000450 | AT2G02070.1 | 34.932 | 146 | 85 | 4 | 52 | 196 | 68 | 204 | 5.63e-19 | 85.1 |
| Msa0000450 | AT1G03840.1 | 33.544 | 158 | 94 | 5 | 41 | 196 | 45 | 193 | 6.54e-19 | 84.7 |
| Msa0000450 | AT5G66730.1 | 33.553 | 152 | 89 | 5 | 47 | 196 | 43 | 184 | 7.63e-19 | 84.3 |
| Msa0000450 | AT3G45260.2 | 35.443 | 158 | 92 | 5 | 41 | 196 | 43 | 192 | 8.56e-19 | 84.0 |
| Msa0000450 | AT3G45260.1 | 35.443 | 158 | 92 | 5 | 41 | 196 | 43 | 192 | 8.56e-19 | 84.0 |
| Msa0000450 | AT1G03840.2 | 33.121 | 157 | 94 | 5 | 41 | 196 | 45 | 191 | 9.31e-19 | 84.3 |
| Msa0000450 | AT2G02080.6 | 36.842 | 133 | 74 | 4 | 65 | 196 | 6 | 129 | 3.96e-18 | 82.0 |
| Msa0000450 | AT2G02080.2 | 36.842 | 133 | 74 | 4 | 65 | 196 | 6 | 129 | 3.96e-18 | 82.0 |
| Msa0000450 | AT3G50700.1 | 31.319 | 182 | 110 | 7 | 20 | 196 | 15 | 186 | 1.11e-17 | 80.9 |
| Msa0000450 | AT4G02670.1 | 33.117 | 154 | 94 | 4 | 44 | 196 | 61 | 206 | 1.13e-17 | 80.9 |
| Msa0000450 | AT4G02670.2 | 33.117 | 154 | 94 | 4 | 44 | 196 | 63 | 208 | 1.36e-17 | 80.5 |
| Msa0000450 | AT3G13810.5 | 31.818 | 154 | 96 | 4 | 44 | 196 | 73 | 218 | 2.56e-17 | 80.1 |
| Msa0000450 | AT3G13810.6 | 31.818 | 154 | 96 | 4 | 44 | 196 | 59 | 204 | 2.74e-17 | 80.1 |
| Msa0000450 | AT3G13810.4 | 31.818 | 154 | 96 | 4 | 44 | 196 | 78 | 223 | 2.86e-17 | 80.1 |
| Msa0000450 | AT3G13810.1 | 31.818 | 154 | 96 | 4 | 44 | 196 | 78 | 223 | 2.86e-17 | 80.1 |
| Msa0000450 | AT3G13810.3 | 31.788 | 151 | 94 | 4 | 47 | 196 | 68 | 210 | 4.10e-17 | 79.3 |
| Msa0000450 | AT3G13810.2 | 31.788 | 151 | 94 | 4 | 47 | 196 | 82 | 224 | 4.80e-17 | 79.3 |
Find 45 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAAGCCATTGAAGGATTTC+AGG | 0.257197 | 1_1:-1602734 | Msa0000450:CDS |
| CCACCAGATGAAGAAGAAAA+AGG | 0.280585 | 1_1:+1602510 | None:intergenic |
| ATCAAGTTCCTAACAATTAC+TGG | 0.290004 | 1_1:-1603486 | Msa0000450:CDS |
| CATATCAAAGCATTTGGATT+TGG | 0.298690 | 1_1:-1602540 | Msa0000450:CDS |
| AGTGAATCACCAAATCAAAA+TGG | 0.332679 | 1_1:-1603526 | Msa0000450:CDS |
| AAGGATCATATCAAAGCATT+TGG | 0.345398 | 1_1:-1602546 | Msa0000450:CDS |
| GGTGATTCACTTGAATTGTT+AGG | 0.354362 | 1_1:+1603538 | None:intergenic |
| CAAACATAAGAGGTCACTTA+AGG | 0.365934 | 1_1:-1602565 | Msa0000450:CDS |
| GTTGGTATCCAGTAATTGTT+AGG | 0.378277 | 1_1:+1603478 | None:intergenic |
| TCCTTCAATGGCTTAGCTCT+TGG | 0.384210 | 1_1:+1602741 | None:intergenic |
| CAATCGTTACAACAACCTTC+AGG | 0.392156 | 1_1:-1603395 | Msa0000450:intron |
| TAATTGTTAGGAACTTGATT+TGG | 0.405327 | 1_1:+1603490 | None:intergenic |
| GTTAGGAAGGCCTATTTGTA+AGG | 0.411385 | 1_1:+1603555 | None:intergenic |
| GTCACAGTGGCCTTACAAAT+AGG | 0.422585 | 1_1:-1603565 | Msa0000450:CDS |
| CCATGCTATTGTTGTTCAAA+GGG | 0.430924 | 1_1:-1602786 | Msa0000450:CDS |
| GTTCAGATTTCAAACATAAG+AGG | 0.434145 | 1_1:-1602575 | Msa0000450:CDS |
| ACTCAGGAACAGATTCTCAT+TGG | 0.435131 | 1_1:-1603457 | Msa0000450:CDS |
| ACCATGCTATTGTTGTTCAA+AGG | 0.475949 | 1_1:-1602787 | Msa0000450:CDS |
| CCGAAAATGTGGGAAGCCAT+TGG | 0.478330 | 1_1:-1602661 | Msa0000450:CDS |
| CAATCACCTTTCACTGCCAA+TGG | 0.484406 | 1_1:+1602645 | None:intergenic |
| GGTCTAACAATGGTCGTGGA+TGG | 0.504798 | 1_1:+1602811 | None:intergenic |
| CATTGGCAGTGAAAGGTGAT+TGG | 0.508045 | 1_1:-1602644 | Msa0000450:CDS |
| TCCAAGAGCTAAGCCATTGA+AGG | 0.510873 | 1_1:-1602742 | Msa0000450:CDS |
| ACGTTTACTTGCCGAAAATG+TGG | 0.517882 | 1_1:-1602672 | Msa0000450:CDS |
| ATGAGAATCTGTTCCTGAGT+TGG | 0.522747 | 1_1:+1603460 | None:intergenic |
| AGTGTCCTGAAATCCTTCAA+TGG | 0.536755 | 1_1:+1602729 | None:intergenic |
| GTCTAACAATGGTCGTGGAT+GGG | 0.548133 | 1_1:+1602812 | None:intergenic |
| GGTAGGTCTAACAATGGTCG+TGG | 0.562164 | 1_1:+1602807 | None:intergenic |
| CGTTTACTTGCCGAAAATGT+GGG | 0.564239 | 1_1:-1602671 | Msa0000450:CDS |
| ATTCACTTGAATTGTTAGGA+AGG | 0.564830 | 1_1:+1603542 | None:intergenic |
| TTGAACAACAATAGCATGGT+AGG | 0.577831 | 1_1:+1602790 | None:intergenic |
| AAGCGTTGGCTTTGTATCTG+TGG | 0.585573 | 1_1:-1602597 | Msa0000450:CDS |
| TTTGGTGATAGATGCATATG+TGG | 0.589947 | 1_1:-1602881 | Msa0000450:intron |
| CAATTACTGGATACCAACTC+AGG | 0.612200 | 1_1:-1603473 | Msa0000450:CDS |
| CACTGCAGACACATTACAAG+AGG | 0.618120 | 1_1:-1602710 | Msa0000450:CDS |
| ACACATTACAAGAGGAAGCA+TGG | 0.621285 | 1_1:-1602702 | Msa0000450:CDS |
| CCCTTTGAACAACAATAGCA+TGG | 0.627956 | 1_1:+1602786 | None:intergenic |
| TTGGTGATAGATGCATATGT+GGG | 0.631361 | 1_1:-1602880 | Msa0000450:intron |
| GGGAAGCCATTGGCAGTGAA+AGG | 0.634540 | 1_1:-1602651 | Msa0000450:CDS |
| ATCATGTTTCAATCAAGCTG+AGG | 0.648432 | 1_1:-1603590 | Msa0000450:CDS |
| CATGGTTCACAGTATCGAAG+AGG | 0.674513 | 1_1:-1602855 | Msa0000450:CDS |
| TAGCATGGTAGGTCTAACAA+TGG | 0.702153 | 1_1:+1602801 | None:intergenic |
| TGGTGATAGATGCATATGTG+GGG | 0.723679 | 1_1:-1602879 | Msa0000450:intron |
| TCAAGCTGAGGATGTCACAG+TGG | 0.732110 | 1_1:-1603578 | Msa0000450:CDS |
| GGTGATAGATGCATATGTGG+GGG | 0.769392 | 1_1:-1602878 | Msa0000450:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTACAAATCCATTTTGATT+TGG | + | chr1_1:1602608-1602627 | None:intergenic | 20.0% |
| !! | TAATCTCTCCAATAAAAAAA+AGG | - | chr1_1:1602857-1602876 | Msa0000450:CDS | 20.0% |
| !!! | AGCATTTACCTTTTTTTTAT+TGG | + | chr1_1:1602868-1602887 | None:intergenic | 20.0% |
| !!! | TAAAATATTGATTGCCATAA+GGG | + | chr1_1:1603127-1603146 | None:intergenic | 20.0% |
| !!! | TTAAAATATTGATTGCCATA+AGG | + | chr1_1:1603128-1603147 | None:intergenic | 20.0% |
| !! | CCAAATTGAAAATATAATCA+GGG | + | chr1_1:1603226-1603245 | None:intergenic | 20.0% |
| !! | ACCAAATTGAAAATATAATC+AGG | + | chr1_1:1603227-1603246 | None:intergenic | 20.0% |
| !!! | TTTACAAATCCATTTTGATT+TGG | + | chr1_1:1602608-1602627 | None:intergenic | 20.0% |
| !! | TAATCTCTCCAATAAAAAAA+AGG | - | chr1_1:1602857-1602876 | Msa0000450:CDS | 20.0% |
| !!! | AGCATTTACCTTTTTTTTAT+TGG | + | chr1_1:1602868-1602887 | None:intergenic | 20.0% |
| !!! | TAAAATATTGATTGCCATAA+GGG | + | chr1_1:1603127-1603146 | None:intergenic | 20.0% |
| !!! | TTAAAATATTGATTGCCATA+AGG | + | chr1_1:1603128-1603147 | None:intergenic | 20.0% |
| !! | CCAAATTGAAAATATAATCA+GGG | + | chr1_1:1603226-1603245 | None:intergenic | 20.0% |
| !! | ACCAAATTGAAAATATAATC+AGG | + | chr1_1:1603227-1603246 | None:intergenic | 20.0% |
| !! | GATTTATGACTTTCATTTTG+TGG | + | chr1_1:1602515-1602534 | None:intergenic | 25.0% |
| ! | TAATTGTTAGGAACTTGATT+TGG | + | chr1_1:1602635-1602654 | None:intergenic | 25.0% |
| ! | AAACTTTAATTGAAGTTCCT+AGG | - | chr1_1:1602982-1603001 | Msa0000450:intron | 25.0% |
| ! | AACTTTAATTGAAGTTCCTA+GGG | - | chr1_1:1602983-1603002 | Msa0000450:intron | 25.0% |
| ! | AGTGATTCTCTATAATATCA+AGG | - | chr1_1:1603083-1603102 | Msa0000450:intron | 25.0% |
| !!! | GCAATCAATATTTTAAACCT+TGG | - | chr1_1:1603132-1603151 | Msa0000450:intron | 25.0% |
| !! | CCCTGATTATATTTTCAATT+TGG | - | chr1_1:1603223-1603242 | Msa0000450:intron | 25.0% |
| !! | GATTTATGACTTTCATTTTG+TGG | + | chr1_1:1602515-1602534 | None:intergenic | 25.0% |
| ! | TAATTGTTAGGAACTTGATT+TGG | + | chr1_1:1602635-1602654 | None:intergenic | 25.0% |
| ! | AAACTTTAATTGAAGTTCCT+AGG | - | chr1_1:1602982-1603001 | Msa0000450:intron | 25.0% |
| ! | AACTTTAATTGAAGTTCCTA+GGG | - | chr1_1:1602983-1603002 | Msa0000450:intron | 25.0% |
| ! | AGTGATTCTCTATAATATCA+AGG | - | chr1_1:1603083-1603102 | Msa0000450:intron | 25.0% |
| !!! | GCAATCAATATTTTAAACCT+TGG | - | chr1_1:1603132-1603151 | Msa0000450:intron | 25.0% |
| !! | CCCTGATTATATTTTCAATT+TGG | - | chr1_1:1603223-1603242 | Msa0000450:intron | 25.0% |
| ATTCACTTGAATTGTTAGGA+AGG | + | chr1_1:1602583-1602602 | None:intergenic | 30.0% | |
| AGTGAATCACCAAATCAAAA+TGG | - | chr1_1:1602596-1602615 | Msa0000450:CDS | 30.0% | |
| ATCAAGTTCCTAACAATTAC+TGG | - | chr1_1:1602636-1602655 | Msa0000450:CDS | 30.0% | |
| ! | TGTAACGATTGAAAGTTTTG+AGG | + | chr1_1:1602718-1602737 | None:intergenic | 30.0% |
| AAGAAAATTACTACACCTGA+AGG | + | chr1_1:1602745-1602764 | None:intergenic | 30.0% | |
| TAATTTATTTGCGACTACCA+AGG | + | chr1_1:1603152-1603171 | None:intergenic | 30.0% | |
| AAACCTAGATTTCTGATCTT+AGG | - | chr1_1:1603187-1603206 | Msa0000450:intron | 30.0% | |
| AATCCTAAGATCAGAAATCT+AGG | + | chr1_1:1603193-1603212 | None:intergenic | 30.0% | |
| GTTCAGATTTCAAACATAAG+AGG | - | chr1_1:1603547-1603566 | Msa0000450:CDS | 30.0% | |
| ! | AAGGATCATATCAAAGCATT+TGG | - | chr1_1:1603576-1603595 | Msa0000450:CDS | 30.0% |
| ! | CATATCAAAGCATTTGGATT+TGG | - | chr1_1:1603582-1603601 | Msa0000450:CDS | 30.0% |
| ATTCACTTGAATTGTTAGGA+AGG | + | chr1_1:1602583-1602602 | None:intergenic | 30.0% | |
| AGTGAATCACCAAATCAAAA+TGG | - | chr1_1:1602596-1602615 | Msa0000450:CDS | 30.0% | |
| ATCAAGTTCCTAACAATTAC+TGG | - | chr1_1:1602636-1602655 | Msa0000450:CDS | 30.0% | |
| ! | TGTAACGATTGAAAGTTTTG+AGG | + | chr1_1:1602718-1602737 | None:intergenic | 30.0% |
| AAGAAAATTACTACACCTGA+AGG | + | chr1_1:1602745-1602764 | None:intergenic | 30.0% | |
| TAATTTATTTGCGACTACCA+AGG | + | chr1_1:1603152-1603171 | None:intergenic | 30.0% | |
| AAACCTAGATTTCTGATCTT+AGG | - | chr1_1:1603187-1603206 | Msa0000450:intron | 30.0% | |
| AATCCTAAGATCAGAAATCT+AGG | + | chr1_1:1603193-1603212 | None:intergenic | 30.0% | |
| GTTCAGATTTCAAACATAAG+AGG | - | chr1_1:1603547-1603566 | Msa0000450:CDS | 30.0% | |
| ! | AAGGATCATATCAAAGCATT+TGG | - | chr1_1:1603576-1603595 | Msa0000450:CDS | 30.0% |
| ! | CATATCAAAGCATTTGGATT+TGG | - | chr1_1:1603582-1603601 | Msa0000450:CDS | 30.0% |
| ATCATGTTTCAATCAAGCTG+AGG | - | chr1_1:1602532-1602551 | Msa0000450:CDS | 35.0% | |
| GGTGATTCACTTGAATTGTT+AGG | + | chr1_1:1602587-1602606 | None:intergenic | 35.0% | |
| GTTGGTATCCAGTAATTGTT+AGG | + | chr1_1:1602647-1602666 | None:intergenic | 35.0% | |
| CATACAATCCTTGTCAAATC+TGG | - | chr1_1:1602953-1602972 | Msa0000450:intron | 35.0% | |
| TTCATTGACCAGATTTGACA+AGG | + | chr1_1:1602964-1602983 | None:intergenic | 35.0% | |
| ! | ATTGAAGTTCCTAGGGTTTT+AGG | - | chr1_1:1602990-1603009 | Msa0000450:intron | 35.0% |
| ! | TTTGGTGATAGATGCATATG+TGG | - | chr1_1:1603241-1603260 | Msa0000450:intron | 35.0% |
| ! | TTGGTGATAGATGCATATGT+GGG | - | chr1_1:1603242-1603261 | Msa0000450:intron | 35.0% |
| TTGAACAACAATAGCATGGT+AGG | + | chr1_1:1603335-1603354 | None:intergenic | 35.0% | |
| ! | ACCATGCTATTGTTGTTCAA+AGG | - | chr1_1:1603335-1603354 | Msa0000450:intron | 35.0% |
| ! | CCATGCTATTGTTGTTCAAA+GGG | - | chr1_1:1603336-1603355 | Msa0000450:intron | 35.0% |
| AGAACTCATGAGAAAAACTG+TGG | - | chr1_1:1603501-1603520 | Msa0000450:CDS | 35.0% | |
| CAAACATAAGAGGTCACTTA+AGG | - | chr1_1:1603557-1603576 | Msa0000450:CDS | 35.0% | |
| CACCAGATGAAGAAGAAAAA+GGG | + | chr1_1:1603614-1603633 | None:intergenic | 35.0% | |
| ! | CTTTTTCTTCTTCATCTGGT+GGG | - | chr1_1:1603613-1603632 | Msa0000450:CDS | 35.0% |
| ATCATGTTTCAATCAAGCTG+AGG | - | chr1_1:1602532-1602551 | Msa0000450:CDS | 35.0% | |
| GGTGATTCACTTGAATTGTT+AGG | + | chr1_1:1602587-1602606 | None:intergenic | 35.0% | |
| GTTGGTATCCAGTAATTGTT+AGG | + | chr1_1:1602647-1602666 | None:intergenic | 35.0% | |
| CATACAATCCTTGTCAAATC+TGG | - | chr1_1:1602953-1602972 | Msa0000450:intron | 35.0% | |
| TTCATTGACCAGATTTGACA+AGG | + | chr1_1:1602964-1602983 | None:intergenic | 35.0% | |
| ! | ATTGAAGTTCCTAGGGTTTT+AGG | - | chr1_1:1602990-1603009 | Msa0000450:intron | 35.0% |
| ! | TTTGGTGATAGATGCATATG+TGG | - | chr1_1:1603241-1603260 | Msa0000450:intron | 35.0% |
| ! | TTGGTGATAGATGCATATGT+GGG | - | chr1_1:1603242-1603261 | Msa0000450:intron | 35.0% |
| TTGAACAACAATAGCATGGT+AGG | + | chr1_1:1603335-1603354 | None:intergenic | 35.0% | |
| ! | ACCATGCTATTGTTGTTCAA+AGG | - | chr1_1:1603335-1603354 | Msa0000450:intron | 35.0% |
| ! | CCATGCTATTGTTGTTCAAA+GGG | - | chr1_1:1603336-1603355 | Msa0000450:intron | 35.0% |
| AGAACTCATGAGAAAAACTG+TGG | - | chr1_1:1603501-1603520 | Msa0000450:CDS | 35.0% | |
| CAAACATAAGAGGTCACTTA+AGG | - | chr1_1:1603557-1603576 | Msa0000450:CDS | 35.0% | |
| CACCAGATGAAGAAGAAAAA+GGG | + | chr1_1:1603614-1603633 | None:intergenic | 35.0% | |
| ! | CTTTTTCTTCTTCATCTGGT+GGG | - | chr1_1:1603613-1603632 | Msa0000450:CDS | 35.0% |
| GTTAGGAAGGCCTATTTGTA+AGG | + | chr1_1:1602570-1602589 | None:intergenic | 40.0% | |
| CAATTACTGGATACCAACTC+AGG | - | chr1_1:1602649-1602668 | Msa0000450:CDS | 40.0% | |
| ATGAGAATCTGTTCCTGAGT+TGG | + | chr1_1:1602665-1602684 | None:intergenic | 40.0% | |
| ACTCAGGAACAGATTCTCAT+TGG | - | chr1_1:1602665-1602684 | Msa0000450:CDS | 40.0% | |
| !!! | TGAAAGTTTTGAGGCAGACT+GGG | + | chr1_1:1602709-1602728 | None:intergenic | 40.0% |
| !!! | TTGAAAGTTTTGAGGCAGAC+TGG | + | chr1_1:1602710-1602729 | None:intergenic | 40.0% |
| CAATCGTTACAACAACCTTC+AGG | - | chr1_1:1602727-1602746 | Msa0000450:CDS | 40.0% | |
| TGGTGATAGATGCATATGTG+GGG | - | chr1_1:1603243-1603262 | Msa0000450:intron | 40.0% | |
| TAGCATGGTAGGTCTAACAA+TGG | + | chr1_1:1603324-1603343 | None:intergenic | 40.0% | |
| CCCTTTGAACAACAATAGCA+TGG | + | chr1_1:1603339-1603358 | None:intergenic | 40.0% | |
| CTAAGCCATTGAAGGATTTC+AGG | - | chr1_1:1603388-1603407 | Msa0000450:intron | 40.0% | |
| AGTGTCCTGAAATCCTTCAA+TGG | + | chr1_1:1603396-1603415 | None:intergenic | 40.0% | |
| ACACATTACAAGAGGAAGCA+TGG | - | chr1_1:1603420-1603439 | Msa0000450:CDS | 40.0% | |
| ACGTTTACTTGCCGAAAATG+TGG | - | chr1_1:1603450-1603469 | Msa0000450:CDS | 40.0% | |
| CGTTTACTTGCCGAAAATGT+GGG | - | chr1_1:1603451-1603470 | Msa0000450:CDS | 40.0% | |
| ! | AGCCCTTTTTCTTCTTCATC+TGG | - | chr1_1:1603609-1603628 | Msa0000450:CDS | 40.0% |
| CCACCAGATGAAGAAGAAAA+AGG | + | chr1_1:1603615-1603634 | None:intergenic | 40.0% | |
| ! | CCTTTTTCTTCTTCATCTGG+TGG | - | chr1_1:1603612-1603631 | Msa0000450:CDS | 40.0% |
| GTTAGGAAGGCCTATTTGTA+AGG | + | chr1_1:1602570-1602589 | None:intergenic | 40.0% | |
| CAATTACTGGATACCAACTC+AGG | - | chr1_1:1602649-1602668 | Msa0000450:CDS | 40.0% | |
| ATGAGAATCTGTTCCTGAGT+TGG | + | chr1_1:1602665-1602684 | None:intergenic | 40.0% | |
| ACTCAGGAACAGATTCTCAT+TGG | - | chr1_1:1602665-1602684 | Msa0000450:CDS | 40.0% | |
| !!! | TGAAAGTTTTGAGGCAGACT+GGG | + | chr1_1:1602709-1602728 | None:intergenic | 40.0% |
| !!! | TTGAAAGTTTTGAGGCAGAC+TGG | + | chr1_1:1602710-1602729 | None:intergenic | 40.0% |
| CAATCGTTACAACAACCTTC+AGG | - | chr1_1:1602727-1602746 | Msa0000450:CDS | 40.0% | |
| TGGTGATAGATGCATATGTG+GGG | - | chr1_1:1603243-1603262 | Msa0000450:intron | 40.0% | |
| TAGCATGGTAGGTCTAACAA+TGG | + | chr1_1:1603324-1603343 | None:intergenic | 40.0% | |
| CCCTTTGAACAACAATAGCA+TGG | + | chr1_1:1603339-1603358 | None:intergenic | 40.0% | |
| CTAAGCCATTGAAGGATTTC+AGG | - | chr1_1:1603388-1603407 | Msa0000450:intron | 40.0% | |
| AGTGTCCTGAAATCCTTCAA+TGG | + | chr1_1:1603396-1603415 | None:intergenic | 40.0% | |
| ACACATTACAAGAGGAAGCA+TGG | - | chr1_1:1603420-1603439 | Msa0000450:CDS | 40.0% | |
| ACGTTTACTTGCCGAAAATG+TGG | - | chr1_1:1603450-1603469 | Msa0000450:CDS | 40.0% | |
| CGTTTACTTGCCGAAAATGT+GGG | - | chr1_1:1603451-1603470 | Msa0000450:CDS | 40.0% | |
| ! | AGCCCTTTTTCTTCTTCATC+TGG | - | chr1_1:1603609-1603628 | Msa0000450:CDS | 40.0% |
| CCACCAGATGAAGAAGAAAA+AGG | + | chr1_1:1603615-1603634 | None:intergenic | 40.0% | |
| ! | CCTTTTTCTTCTTCATCTGG+TGG | - | chr1_1:1603612-1603631 | Msa0000450:CDS | 40.0% |
| ! | GTCACAGTGGCCTTACAAAT+AGG | - | chr1_1:1602557-1602576 | Msa0000450:CDS | 45.0% |
| CTGTCATGTCCTAAAACCCT+AGG | + | chr1_1:1603002-1603021 | None:intergenic | 45.0% | |
| GAACGCAATCGAGGTTTCAT+CGG | - | chr1_1:1603049-1603068 | Msa0000450:intron | 45.0% | |
| ATTGATTGCCATAAGGGTCG+TGG | + | chr1_1:1603121-1603140 | None:intergenic | 45.0% | |
| GGTGATAGATGCATATGTGG+GGG | - | chr1_1:1603244-1603263 | Msa0000450:intron | 45.0% | |
| ! | CATGGTTCACAGTATCGAAG+AGG | - | chr1_1:1603267-1603286 | Msa0000450:intron | 45.0% |
| !! | TGGGTTCTTTTTAGCGAGTC+TGG | + | chr1_1:1603294-1603313 | None:intergenic | 45.0% |
| GTCTAACAATGGTCGTGGAT+GGG | + | chr1_1:1603313-1603332 | None:intergenic | 45.0% | |
| TCCAAGAGCTAAGCCATTGA+AGG | - | chr1_1:1603380-1603399 | Msa0000450:intron | 45.0% | |
| ! | TCCTTCAATGGCTTAGCTCT+TGG | + | chr1_1:1603384-1603403 | None:intergenic | 45.0% |
| CACTGCAGACACATTACAAG+AGG | - | chr1_1:1603412-1603431 | Msa0000450:CDS | 45.0% | |
| ! | CCAATGGCTTCCCACATTTT+CGG | + | chr1_1:1603464-1603483 | None:intergenic | 45.0% |
| CAATCACCTTTCACTGCCAA+TGG | + | chr1_1:1603480-1603499 | None:intergenic | 45.0% | |
| CATTGGCAGTGAAAGGTGAT+TGG | - | chr1_1:1603478-1603497 | Msa0000450:CDS | 45.0% | |
| AGAAAAACTGTGGCAAGCGT+TGG | - | chr1_1:1603511-1603530 | Msa0000450:CDS | 45.0% | |
| !! | AAGCGTTGGCTTTGTATCTG+TGG | - | chr1_1:1603525-1603544 | Msa0000450:CDS | 45.0% |
| ! | GTCACAGTGGCCTTACAAAT+AGG | - | chr1_1:1602557-1602576 | Msa0000450:CDS | 45.0% |
| CTGTCATGTCCTAAAACCCT+AGG | + | chr1_1:1603002-1603021 | None:intergenic | 45.0% | |
| GAACGCAATCGAGGTTTCAT+CGG | - | chr1_1:1603049-1603068 | Msa0000450:intron | 45.0% | |
| ATTGATTGCCATAAGGGTCG+TGG | + | chr1_1:1603121-1603140 | None:intergenic | 45.0% | |
| GGTGATAGATGCATATGTGG+GGG | - | chr1_1:1603244-1603263 | Msa0000450:intron | 45.0% | |
| ! | CATGGTTCACAGTATCGAAG+AGG | - | chr1_1:1603267-1603286 | Msa0000450:intron | 45.0% |
| !! | TGGGTTCTTTTTAGCGAGTC+TGG | + | chr1_1:1603294-1603313 | None:intergenic | 45.0% |
| GTCTAACAATGGTCGTGGAT+GGG | + | chr1_1:1603313-1603332 | None:intergenic | 45.0% | |
| TCCAAGAGCTAAGCCATTGA+AGG | - | chr1_1:1603380-1603399 | Msa0000450:intron | 45.0% | |
| ! | TCCTTCAATGGCTTAGCTCT+TGG | + | chr1_1:1603384-1603403 | None:intergenic | 45.0% |
| CACTGCAGACACATTACAAG+AGG | - | chr1_1:1603412-1603431 | Msa0000450:CDS | 45.0% | |
| ! | CCAATGGCTTCCCACATTTT+CGG | + | chr1_1:1603464-1603483 | None:intergenic | 45.0% |
| CAATCACCTTTCACTGCCAA+TGG | + | chr1_1:1603480-1603499 | None:intergenic | 45.0% | |
| CATTGGCAGTGAAAGGTGAT+TGG | - | chr1_1:1603478-1603497 | Msa0000450:CDS | 45.0% | |
| AGAAAAACTGTGGCAAGCGT+TGG | - | chr1_1:1603511-1603530 | Msa0000450:CDS | 45.0% | |
| !! | AAGCGTTGGCTTTGTATCTG+TGG | - | chr1_1:1603525-1603544 | Msa0000450:CDS | 45.0% |
| TCAAGCTGAGGATGTCACAG+TGG | - | chr1_1:1602544-1602563 | Msa0000450:CDS | 50.0% | |
| TTGCAACACGAACGCAATCG+AGG | - | chr1_1:1603040-1603059 | Msa0000450:intron | 50.0% | |
| TGATCCTACCACGACCCTTA+TGG | - | chr1_1:1603110-1603129 | Msa0000450:intron | 50.0% | |
| ATTGCCATAAGGGTCGTGGT+AGG | + | chr1_1:1603117-1603136 | None:intergenic | 50.0% | |
| TAGATGCATATGTGGGGGCA+TGG | - | chr1_1:1603249-1603268 | Msa0000450:intron | 50.0% | |
| GGTCTAACAATGGTCGTGGA+TGG | + | chr1_1:1603314-1603333 | None:intergenic | 50.0% | |
| GGTAGGTCTAACAATGGTCG+TGG | + | chr1_1:1603318-1603337 | None:intergenic | 50.0% | |
| CCGAAAATGTGGGAAGCCAT+TGG | - | chr1_1:1603461-1603480 | Msa0000450:CDS | 50.0% | |
| TCAAGCTGAGGATGTCACAG+TGG | - | chr1_1:1602544-1602563 | Msa0000450:CDS | 50.0% | |
| TTGCAACACGAACGCAATCG+AGG | - | chr1_1:1603040-1603059 | Msa0000450:intron | 50.0% | |
| TGATCCTACCACGACCCTTA+TGG | - | chr1_1:1603110-1603129 | Msa0000450:intron | 50.0% | |
| ATTGCCATAAGGGTCGTGGT+AGG | + | chr1_1:1603117-1603136 | None:intergenic | 50.0% | |
| TAGATGCATATGTGGGGGCA+TGG | - | chr1_1:1603249-1603268 | Msa0000450:intron | 50.0% | |
| GGTCTAACAATGGTCGTGGA+TGG | + | chr1_1:1603314-1603333 | None:intergenic | 50.0% | |
| GGTAGGTCTAACAATGGTCG+TGG | + | chr1_1:1603318-1603337 | None:intergenic | 50.0% | |
| CCGAAAATGTGGGAAGCCAT+TGG | - | chr1_1:1603461-1603480 | Msa0000450:CDS | 50.0% | |
| GGGAAGCCATTGGCAGTGAA+AGG | - | chr1_1:1603471-1603490 | Msa0000450:CDS | 55.0% | |
| GGGAAGCCATTGGCAGTGAA+AGG | - | chr1_1:1603471-1603490 | Msa0000450:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 1602506 | 1603638 | 1602506 | ID=Msa0000450;Name=Msa0000450 |
| chr1_1 | mRNA | 1602506 | 1603638 | 1602506 | ID=Msa0000450-mRNA-1;Parent=Msa0000450;Name=Msa0000450-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0|1|1|0|2|0|210 |
| chr1_1 | exon | 1603396 | 1603638 | 1603396 | ID=Msa0000450-mRNA-1:exon:245;Parent=Msa0000450-mRNA-1 |
| chr1_1 | exon | 1602506 | 1602892 | 1602506 | ID=Msa0000450-mRNA-1:exon:244;Parent=Msa0000450-mRNA-1 |
| chr1_1 | CDS | 1603396 | 1603638 | 1603396 | ID=Msa0000450-mRNA-1:cds;Parent=Msa0000450-mRNA-1 |
| chr1_1 | CDS | 1602506 | 1602892 | 1602506 | ID=Msa0000450-mRNA-1:cds;Parent=Msa0000450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
