Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0000530 | RHN49520.1 | 88.936 | 235 | 20 | 2 | 1 | 229 | 1 | 235 | 7.69e-140 | 403 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0000530 | sp|A2X1N2|ORR24_ORYSI | 57.627 | 236 | 89 | 3 | 3 | 229 | 23 | 256 | 5.01e-86 | 270 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0000530 | A0A396H8C6 | 88.936 | 235 | 20 | 2 | 1 | 229 | 1 | 235 | 3.67e-140 | 403 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0000530 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0000530 | MtrunA17_Chr7g0275401 | 88.936 | 235 | 20 | 2 | 1 | 229 | 1 | 235 | 7.07e-144 | 403 |
| Msa0000530 | MtrunA17_Chr1g0149841 | 77.253 | 233 | 48 | 1 | 1 | 228 | 1 | 233 | 1.24e-113 | 334 |
| Msa0000530 | MtrunA17_Chr7g0275891 | 71.255 | 247 | 51 | 4 | 1 | 228 | 1 | 246 | 4.71e-112 | 325 |
| Msa0000530 | MtrunA17_Chr1g0149851 | 69.355 | 248 | 56 | 2 | 1 | 228 | 1 | 248 | 2.59e-102 | 306 |
| Msa0000530 | MtrunA17_Chr3g0137101 | 59.916 | 237 | 84 | 3 | 2 | 228 | 5 | 240 | 1.22e-82 | 258 |
| Msa0000530 | MtrunA17_Chr1g0149831 | 74.118 | 170 | 36 | 2 | 64 | 228 | 1 | 167 | 1.70e-72 | 220 |
| Msa0000530 | MtrunA17_Chr2g0304841 | 52.282 | 241 | 101 | 4 | 3 | 229 | 16 | 256 | 2.91e-69 | 224 |
| Msa0000530 | MtrunA17_Chr1g0161431 | 48.133 | 241 | 105 | 3 | 2 | 228 | 8 | 242 | 6.53e-68 | 219 |
| Msa0000530 | MtrunA17_Chr4g0074411 | 50.661 | 227 | 110 | 1 | 5 | 229 | 18 | 244 | 2.75e-66 | 215 |
| Msa0000530 | MtrunA17_Chr2g0294911 | 48.485 | 231 | 114 | 2 | 1 | 228 | 25 | 253 | 3.13e-66 | 214 |
| Msa0000530 | MtrunA17_Chr4g0067981 | 49.130 | 230 | 114 | 2 | 2 | 228 | 28 | 257 | 6.42e-66 | 215 |
| Msa0000530 | MtrunA17_Chr4g0074401 | 48.707 | 232 | 114 | 1 | 3 | 229 | 15 | 246 | 7.18e-64 | 208 |
| Msa0000530 | MtrunA17_Chr3g0123131 | 47.436 | 234 | 110 | 2 | 4 | 228 | 12 | 241 | 7.31e-62 | 202 |
| Msa0000530 | MtrunA17_Chr8g0376881 | 48.739 | 238 | 101 | 4 | 3 | 228 | 23 | 251 | 5.11e-61 | 199 |
| Msa0000530 | MtrunA17_Chr3g0134461 | 48.684 | 228 | 69 | 2 | 2 | 228 | 5 | 185 | 1.22e-58 | 183 |
| Msa0000530 | MtrunA17_Chr4g0074421 | 50.000 | 174 | 87 | 0 | 55 | 228 | 2 | 175 | 5.63e-50 | 161 |
| Msa0000530 | MtrunA17_Chr3g0134481 | 64.341 | 129 | 46 | 0 | 1 | 129 | 4 | 132 | 1.38e-48 | 157 |
| Msa0000530 | MtrunA17_Chr4g0009851 | 36.444 | 225 | 120 | 4 | 5 | 229 | 11 | 212 | 1.45e-42 | 146 |
| Msa0000530 | MtrunA17_Chr4g0009901 | 35.965 | 228 | 123 | 4 | 2 | 229 | 7 | 211 | 3.50e-41 | 141 |
| Msa0000530 | MtrunA17_Chr6g0471041 | 34.802 | 227 | 123 | 5 | 4 | 229 | 13 | 215 | 2.07e-33 | 124 |
| Msa0000530 | MtrunA17_Chr4g0009981 | 35.000 | 180 | 95 | 3 | 50 | 229 | 2 | 159 | 4.23e-32 | 117 |
| Msa0000530 | MtrunA17_Chr8g0350761 | 30.328 | 244 | 145 | 7 | 8 | 228 | 20 | 261 | 2.67e-24 | 100 |
| Msa0000530 | MtrunA17_Chr4g0011071 | 31.646 | 158 | 86 | 3 | 52 | 209 | 36 | 171 | 8.66e-23 | 91.3 |
| Msa0000530 | MtrunA17_Chr6g0456631 | 36.434 | 129 | 79 | 2 | 1 | 127 | 5 | 132 | 2.49e-22 | 89.7 |
| Msa0000530 | MtrunA17_Chr8g0391911 | 30.417 | 240 | 140 | 7 | 5 | 229 | 9 | 236 | 1.34e-21 | 89.7 |
| Msa0000530 | MtrunA17_Chr8g0345901 | 30.723 | 166 | 104 | 2 | 6 | 160 | 33 | 198 | 6.52e-21 | 90.9 |
| Msa0000530 | MtrunA17_Chr8g0383961 | 35.484 | 124 | 80 | 0 | 4 | 127 | 13 | 136 | 1.57e-20 | 87.0 |
| Msa0000530 | MtrunA17_Chr3g0127941 | 31.250 | 144 | 94 | 2 | 9 | 148 | 56 | 198 | 7.50e-20 | 87.8 |
| Msa0000530 | MtrunA17_Chr3g0091641 | 29.319 | 191 | 117 | 3 | 1 | 173 | 14 | 204 | 3.98e-19 | 85.5 |
| Msa0000530 | MtrunA17_Chr4g0009991 | 36.090 | 133 | 62 | 4 | 97 | 229 | 1 | 110 | 1.46e-18 | 78.6 |
| Msa0000530 | MtrunA17_Chr4g0061021 | 32.031 | 128 | 84 | 1 | 6 | 130 | 30 | 157 | 1.34e-17 | 81.3 |
| Msa0000530 | MtrunA17_Chr5g0423031 | 37.624 | 101 | 58 | 2 | 2 | 102 | 7 | 102 | 7.59e-17 | 75.5 |
| Msa0000530 | MtrunA17_Chr1g0181811 | 30.539 | 167 | 106 | 3 | 9 | 172 | 85 | 244 | 1.44e-16 | 78.2 |
| Msa0000530 | MtrunA17_Chr7g0276361 | 29.714 | 175 | 109 | 4 | 9 | 173 | 14 | 184 | 3.47e-16 | 77.0 |
| Msa0000530 | MtrunA17_Chr4g0030271 | 35.246 | 122 | 76 | 1 | 9 | 127 | 89 | 210 | 4.47e-15 | 73.9 |
| Msa0000530 | MtrunA17_Chr4g0059571 | 32.308 | 130 | 76 | 2 | 9 | 126 | 26 | 155 | 3.17e-13 | 66.2 |
| Msa0000530 | MtrunA17_Chr6g0473731 | 29.861 | 144 | 85 | 3 | 85 | 228 | 10 | 137 | 4.73e-13 | 67.8 |
| Msa0000530 | MtrunA17_Chr8g0352871 | 29.286 | 140 | 79 | 3 | 9 | 128 | 9 | 148 | 4.26e-12 | 62.4 |
| Msa0000530 | MtrunA17_Chr7g0256551 | 27.273 | 165 | 98 | 3 | 9 | 152 | 9 | 172 | 1.07e-11 | 62.4 |
| Msa0000530 | MtrunA17_Chr5g0400241 | 33.333 | 126 | 78 | 3 | 4 | 127 | 13 | 134 | 1.21e-11 | 63.5 |
| Msa0000530 | MtrunA17_Chr4g0054981 | 31.200 | 125 | 82 | 2 | 4 | 127 | 13 | 134 | 3.05e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0000530 | AT4G31920.1 | 60.619 | 226 | 78 | 2 | 3 | 228 | 11 | 225 | 8.02e-83 | 257 |
| Msa0000530 | AT2G25180.1 | 57.391 | 230 | 91 | 3 | 3 | 228 | 11 | 237 | 2.91e-77 | 244 |
| Msa0000530 | AT3G16857.1 | 46.484 | 256 | 96 | 3 | 5 | 228 | 33 | 279 | 3.11e-66 | 216 |
| Msa0000530 | AT3G16857.2 | 46.304 | 257 | 97 | 3 | 5 | 229 | 33 | 280 | 1.09e-64 | 213 |
| Msa0000530 | AT5G58080.1 | 50.420 | 238 | 95 | 5 | 3 | 229 | 12 | 237 | 8.41e-62 | 204 |
| Msa0000530 | AT2G01760.1 | 45.417 | 240 | 119 | 3 | 1 | 228 | 3 | 242 | 8.40e-61 | 195 |
| Msa0000530 | AT1G67710.1 | 48.276 | 232 | 108 | 3 | 7 | 229 | 9 | 237 | 8.61e-60 | 196 |
| Msa0000530 | AT2G01760.2 | 40.672 | 268 | 119 | 4 | 1 | 228 | 3 | 270 | 1.07e-54 | 180 |
| Msa0000530 | AT3G16857.3 | 45.413 | 218 | 78 | 3 | 43 | 228 | 1 | 209 | 7.23e-52 | 177 |
| Msa0000530 | AT5G49240.1 | 36.123 | 227 | 137 | 4 | 8 | 228 | 41 | 265 | 1.19e-40 | 140 |
| Msa0000530 | AT3G62670.1 | 38.889 | 216 | 108 | 8 | 24 | 227 | 54 | 257 | 3.27e-37 | 135 |
| Msa0000530 | AT1G67710.2 | 46.552 | 174 | 81 | 3 | 64 | 228 | 1 | 171 | 7.76e-36 | 132 |
| Msa0000530 | AT2G01760.3 | 42.373 | 177 | 90 | 3 | 64 | 228 | 1 | 177 | 6.63e-35 | 126 |
| Msa0000530 | AT1G49190.1 | 28.627 | 255 | 134 | 5 | 3 | 229 | 28 | 262 | 5.00e-30 | 115 |
| Msa0000530 | AT1G49190.2 | 29.614 | 233 | 136 | 6 | 3 | 207 | 28 | 260 | 1.51e-23 | 99.0 |
| Msa0000530 | AT5G07210.2 | 27.778 | 252 | 149 | 6 | 9 | 229 | 16 | 265 | 2.95e-23 | 97.8 |
| Msa0000530 | AT2G46790.1 | 37.398 | 123 | 72 | 2 | 9 | 127 | 37 | 158 | 5.65e-22 | 94.0 |
| Msa0000530 | AT2G46790.3 | 37.398 | 123 | 72 | 2 | 9 | 127 | 37 | 158 | 5.66e-22 | 93.6 |
| Msa0000530 | AT1G67710.3 | 39.610 | 154 | 81 | 3 | 84 | 228 | 12 | 162 | 1.04e-21 | 93.2 |
| Msa0000530 | AT2G27070.1 | 27.451 | 255 | 149 | 5 | 9 | 229 | 16 | 268 | 1.29e-21 | 93.2 |
| Msa0000530 | AT5G07210.1 | 26.923 | 260 | 149 | 7 | 9 | 229 | 16 | 273 | 8.89e-21 | 90.9 |
| Msa0000530 | AT5G24470.1 | 34.646 | 127 | 78 | 2 | 6 | 128 | 47 | 172 | 1.23e-20 | 90.5 |
| Msa0000530 | AT5G61380.1 | 34.959 | 123 | 77 | 1 | 11 | 130 | 21 | 143 | 1.17e-19 | 87.4 |
| Msa0000530 | AT5G60100.7 | 37.705 | 122 | 73 | 1 | 9 | 127 | 64 | 185 | 7.19e-19 | 84.7 |
| Msa0000530 | AT5G60100.6 | 37.705 | 122 | 73 | 1 | 9 | 127 | 64 | 185 | 7.19e-19 | 84.7 |
| Msa0000530 | AT5G60100.4 | 37.705 | 122 | 73 | 1 | 9 | 127 | 64 | 185 | 7.19e-19 | 84.7 |
| Msa0000530 | AT5G60100.5 | 37.705 | 122 | 73 | 1 | 9 | 127 | 64 | 185 | 8.25e-19 | 85.1 |
| Msa0000530 | AT5G60100.3 | 37.705 | 122 | 73 | 1 | 9 | 127 | 64 | 185 | 8.25e-19 | 85.1 |
| Msa0000530 | AT5G60100.1 | 37.705 | 122 | 73 | 1 | 9 | 127 | 64 | 185 | 8.25e-19 | 85.1 |
| Msa0000530 | AT5G60100.2 | 37.705 | 122 | 73 | 1 | 9 | 127 | 64 | 185 | 1.04e-18 | 84.7 |
| Msa0000530 | AT5G02810.1 | 35.246 | 122 | 76 | 1 | 9 | 127 | 78 | 199 | 1.06e-17 | 82.0 |
| Msa0000530 | AT3G57040.2 | 28.873 | 142 | 79 | 3 | 9 | 128 | 9 | 150 | 2.60e-11 | 61.6 |
| Msa0000530 | AT3G57040.1 | 28.873 | 142 | 79 | 3 | 9 | 128 | 9 | 150 | 2.60e-11 | 61.6 |
| Msa0000530 | AT5G62920.1 | 34.559 | 136 | 75 | 5 | 9 | 131 | 25 | 159 | 5.38e-11 | 60.1 |
Find 31 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGAACTTGTCTCAAGATTT+TGG | 0.120883 | 1_1:-1693113 | Msa0000530:CDS |
| CTTGTCGCGGTTAACAAATT+TGG | 0.304801 | 1_1:-1691936 | Msa0000530:CDS |
| CCATTTCCACTATCAGAATT+AGG | 0.317534 | 1_1:+1692134 | None:intergenic |
| TGAAAGAGGTGAAGATGATT+TGG | 0.332494 | 1_1:-1692208 | Msa0000530:CDS |
| ATGAATGATGAGTTTCGAAT+TGG | 0.346923 | 1_1:-1693163 | Msa0000530:CDS |
| TTCACCTCTTTCAATTGAAC+AGG | 0.352913 | 1_1:+1692218 | None:intergenic |
| TGAGCTTGTTGGACTTGAAA+TGG | 0.372169 | 1_1:-1692416 | Msa0000530:CDS |
| TTTAAGCTTCTTGAGCTTGT+TGG | 0.375182 | 1_1:-1692427 | Msa0000530:CDS |
| CAACGAAATCGAGGCTTCTT+CGG | 0.398280 | 1_1:+1691984 | None:intergenic |
| CGAGGCTTCTTCGGCGCTGT+TGG | 0.409792 | 1_1:+1691993 | None:intergenic |
| ATTGCTTTCATAACCAGCTT+AGG | 0.420417 | 1_1:+1692272 | None:intergenic |
| AAACTTGTGGTGTAAGTCAT+TGG | 0.441523 | 1_1:+1691959 | None:intergenic |
| TTCAGTGCTATTCGTGCACT+TGG | 0.445352 | 1_1:+1692520 | None:intergenic |
| TATGAACATTACTCATTACT+AGG | 0.460796 | 1_1:+1692467 | None:intergenic |
| AGCTTAAATCCATCCATGTC+TGG | 0.471845 | 1_1:+1692442 | None:intergenic |
| TGAAAATGATGATCCTAAGC+TGG | 0.496842 | 1_1:-1692285 | Msa0000530:CDS |
| TTGCATAACTTACTTATGAC+AGG | 0.526242 | 1_1:+1692388 | None:intergenic |
| TAAGAATGAAGATGATGTTG+AGG | 0.533063 | 1_1:-1692048 | Msa0000530:CDS |
| CGAAGAAGCCTCGATTTCGT+TGG | 0.556982 | 1_1:-1691983 | Msa0000530:CDS |
| TATTCGTGCACTTGGAGCAG+TGG | 0.566879 | 1_1:+1692528 | None:intergenic |
| GTTCATATGCCAGACATGGA+TGG | 0.584384 | 1_1:-1692451 | Msa0000530:CDS |
| GAAACCTGTTCAATTGAAAG+AGG | 0.592307 | 1_1:-1692222 | Msa0000530:CDS |
| GTTATGAAAGCAATTGATCT+CGG | 0.596446 | 1_1:-1692263 | Msa0000530:CDS |
| GAGTATGATCATGAAAATGA+TGG | 0.597211 | 1_1:-1692017 | Msa0000530:CDS |
| ATAACTTACTTATGACAGGT+AGG | 0.629417 | 1_1:+1692392 | None:intergenic |
| GAATGTTGAAAATCTTACAA+AGG | 0.637383 | 1_1:-1691623 | Msa0000530:CDS |
| ACACCACAAGTTTCTTGTCG+CGG | 0.645407 | 1_1:-1691949 | Msa0000530:CDS |
| CTCGAAAGGTGTCAATACCA+TGG | 0.650196 | 1_1:-1693082 | Msa0000530:intron |
| TCATTGGACCAACGAAATCG+AGG | 0.660616 | 1_1:+1691975 | None:intergenic |
| TAATGTTCATATGCCAGACA+TGG | 0.666265 | 1_1:-1692455 | Msa0000530:CDS |
| TAACCGCGACAAGAAACTTG+TGG | 0.669528 | 1_1:+1691946 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTAATATCATTATGAA+AGG | + | chr1_1:1692209-1692228 | None:intergenic | 10.0% |
| !! | ATAATATTAATATCATCATT+GGG | + | chr1_1:1692991-1693010 | None:intergenic | 10.0% |
| !! | AAAATTAATATCATTATGAA+AGG | + | chr1_1:1692209-1692228 | None:intergenic | 10.0% |
| !! | ATAATATTAATATCATCATT+GGG | + | chr1_1:1692991-1693010 | None:intergenic | 10.0% |
| !! | ATCATTAAATTGTAATCATA+AGG | - | chr1_1:1691785-1691804 | Msa0000530:intron | 15.0% |
| !! | TCATTAAATTGTAATCATAA+GGG | - | chr1_1:1691786-1691805 | Msa0000530:intron | 15.0% |
| !! | CATAATATTAATATCATCAT+TGG | + | chr1_1:1692992-1693011 | None:intergenic | 15.0% |
| !! | ATCATTAAATTGTAATCATA+AGG | - | chr1_1:1691785-1691804 | Msa0000530:intron | 15.0% |
| !! | TCATTAAATTGTAATCATAA+GGG | - | chr1_1:1691786-1691805 | Msa0000530:intron | 15.0% |
| !! | CATAATATTAATATCATCAT+TGG | + | chr1_1:1692992-1693011 | None:intergenic | 15.0% |
| !!! | TAATATAATTGATTCGTACA+AGG | + | chr1_1:1691965-1691984 | None:intergenic | 20.0% |
| !!! | TGTGAACTTATGTTATTTTT+TGG | - | chr1_1:1692112-1692131 | Msa0000530:intron | 20.0% |
| !!! | TAATATAATTGATTCGTACA+AGG | + | chr1_1:1691965-1691984 | None:intergenic | 20.0% |
| !!! | TGTGAACTTATGTTATTTTT+TGG | - | chr1_1:1692112-1692131 | Msa0000530:intron | 20.0% |
| ! | TAAATTGTAATCATAAGGGA+CGG | - | chr1_1:1691790-1691809 | Msa0000530:intron | 25.0% |
| ! | AATTAGAACGATAACGTTAA+CGG | - | chr1_1:1691898-1691917 | Msa0000530:intron | 25.0% |
| !! | AATCTTTGAGAGAATTTGAT+CGG | + | chr1_1:1692041-1692060 | None:intergenic | 25.0% |
| ! | TATGAACATTACTCATTACT+AGG | + | chr1_1:1692317-1692336 | None:intergenic | 25.0% |
| ! | ATGTATCAGTAACAAAAGAT+TGG | + | chr1_1:1692423-1692442 | None:intergenic | 25.0% |
| !! | TTATCCTTTCTTTTTCTAGA+TGG | + | chr1_1:1692716-1692735 | None:intergenic | 25.0% |
| ! | AGCAATAGATAAAAGATTTG+AGG | + | chr1_1:1692920-1692939 | None:intergenic | 25.0% |
| ! | TTTATCAAAGATGTTTGAGT+AGG | - | chr1_1:1692955-1692974 | Msa0000530:intron | 25.0% |
| !! | ATCAAGTTAAGAATCTTTTG+TGG | + | chr1_1:1693138-1693157 | None:intergenic | 25.0% |
| ! | GAATGTTGAAAATCTTACAA+AGG | - | chr1_1:1693158-1693177 | Msa0000530:CDS | 25.0% |
| ! | TAAATTGTAATCATAAGGGA+CGG | - | chr1_1:1691790-1691809 | Msa0000530:intron | 25.0% |
| ! | AATTAGAACGATAACGTTAA+CGG | - | chr1_1:1691898-1691917 | Msa0000530:intron | 25.0% |
| !! | AATCTTTGAGAGAATTTGAT+CGG | + | chr1_1:1692041-1692060 | None:intergenic | 25.0% |
| ! | TATGAACATTACTCATTACT+AGG | + | chr1_1:1692317-1692336 | None:intergenic | 25.0% |
| ! | ATGTATCAGTAACAAAAGAT+TGG | + | chr1_1:1692423-1692442 | None:intergenic | 25.0% |
| !! | TTATCCTTTCTTTTTCTAGA+TGG | + | chr1_1:1692716-1692735 | None:intergenic | 25.0% |
| ! | AGCAATAGATAAAAGATTTG+AGG | + | chr1_1:1692920-1692939 | None:intergenic | 25.0% |
| ! | TTTATCAAAGATGTTTGAGT+AGG | - | chr1_1:1692955-1692974 | Msa0000530:intron | 25.0% |
| !! | ATCAAGTTAAGAATCTTTTG+TGG | + | chr1_1:1693138-1693157 | None:intergenic | 25.0% |
| ! | GAATGTTGAAAATCTTACAA+AGG | - | chr1_1:1693158-1693177 | Msa0000530:CDS | 25.0% |
| ATGAATGATGAGTTTCGAAT+TGG | - | chr1_1:1691618-1691637 | Msa0000530:CDS | 30.0% | |
| ! | AAAGAAAAAGAAGCATACCA+TGG | + | chr1_1:1691719-1691738 | None:intergenic | 30.0% |
| ! | CACTTCTAATCTAAGGTTAT+CGG | + | chr1_1:1691821-1691840 | None:intergenic | 30.0% |
| GATCAAATTCTCTCAAAGAT+TGG | - | chr1_1:1692040-1692059 | Msa0000530:CDS | 30.0% | |
| TTTAACTGCATCCAAATTGT+TGG | - | chr1_1:1692145-1692164 | Msa0000530:CDS | 30.0% | |
| ATCGAATGAATCCAACAATT+TGG | + | chr1_1:1692159-1692178 | None:intergenic | 30.0% | |
| ATAACTTACTTATGACAGGT+AGG | + | chr1_1:1692392-1692411 | None:intergenic | 30.0% | |
| TTGCATAACTTACTTATGAC+AGG | + | chr1_1:1692396-1692415 | None:intergenic | 30.0% | |
| GTTATGAAAGCAATTGATCT+CGG | - | chr1_1:1692518-1692537 | Msa0000530:CDS | 30.0% | |
| AAAGCCATCTAGAAAAAGAA+AGG | - | chr1_1:1692709-1692728 | Msa0000530:intron | 30.0% | |
| TAAGAATGAAGATGATGTTG+AGG | - | chr1_1:1692733-1692752 | Msa0000530:intron | 30.0% | |
| GAGTATGATCATGAAAATGA+TGG | - | chr1_1:1692764-1692783 | Msa0000530:intron | 30.0% | |
| !!! | AGTTGTTATTTTGTTTGCAG+AGG | - | chr1_1:1693107-1693126 | Msa0000530:CDS | 30.0% |
| ATGAATGATGAGTTTCGAAT+TGG | - | chr1_1:1691618-1691637 | Msa0000530:CDS | 30.0% | |
| ! | AAAGAAAAAGAAGCATACCA+TGG | + | chr1_1:1691719-1691738 | None:intergenic | 30.0% |
| ! | CACTTCTAATCTAAGGTTAT+CGG | + | chr1_1:1691821-1691840 | None:intergenic | 30.0% |
| GATCAAATTCTCTCAAAGAT+TGG | - | chr1_1:1692040-1692059 | Msa0000530:CDS | 30.0% | |
| TTTAACTGCATCCAAATTGT+TGG | - | chr1_1:1692145-1692164 | Msa0000530:CDS | 30.0% | |
| ATCGAATGAATCCAACAATT+TGG | + | chr1_1:1692159-1692178 | None:intergenic | 30.0% | |
| ATAACTTACTTATGACAGGT+AGG | + | chr1_1:1692392-1692411 | None:intergenic | 30.0% | |
| TTGCATAACTTACTTATGAC+AGG | + | chr1_1:1692396-1692415 | None:intergenic | 30.0% | |
| GTTATGAAAGCAATTGATCT+CGG | - | chr1_1:1692518-1692537 | Msa0000530:CDS | 30.0% | |
| AAAGCCATCTAGAAAAAGAA+AGG | - | chr1_1:1692709-1692728 | Msa0000530:intron | 30.0% | |
| TAAGAATGAAGATGATGTTG+AGG | - | chr1_1:1692733-1692752 | Msa0000530:intron | 30.0% | |
| GAGTATGATCATGAAAATGA+TGG | - | chr1_1:1692764-1692783 | Msa0000530:intron | 30.0% | |
| !!! | AGTTGTTATTTTGTTTGCAG+AGG | - | chr1_1:1693107-1693126 | Msa0000530:CDS | 30.0% |
| ! | CAGAACTTGTCTCAAGATTT+TGG | - | chr1_1:1691668-1691687 | Msa0000530:intron | 35.0% |
| ! | TCTTTAGATCCTTTTCGCTA+AGG | - | chr1_1:1691869-1691888 | Msa0000530:intron | 35.0% |
| ATTACAATGCCTTAGCGAAA+AGG | + | chr1_1:1691881-1691900 | None:intergenic | 35.0% | |
| TAATGTTCATATGCCAGACA+TGG | - | chr1_1:1692326-1692345 | Msa0000530:intron | 35.0% | |
| TTTAAGCTTCTTGAGCTTGT+TGG | - | chr1_1:1692354-1692373 | Msa0000530:intron | 35.0% | |
| TGAAAATGATGATCCTAAGC+TGG | - | chr1_1:1692496-1692515 | Msa0000530:CDS | 35.0% | |
| ATTGCTTTCATAACCAGCTT+AGG | + | chr1_1:1692512-1692531 | None:intergenic | 35.0% | |
| GAAACCTGTTCAATTGAAAG+AGG | - | chr1_1:1692559-1692578 | Msa0000530:intron | 35.0% | |
| TTCACCTCTTTCAATTGAAC+AGG | + | chr1_1:1692566-1692585 | None:intergenic | 35.0% | |
| TGAAAGAGGTGAAGATGATT+TGG | - | chr1_1:1692573-1692592 | Msa0000530:intron | 35.0% | |
| CCATTTCCACTATCAGAATT+AGG | + | chr1_1:1692650-1692669 | None:intergenic | 35.0% | |
| !! | CCTAATTCTGATAGTGGAAA+TGG | - | chr1_1:1692647-1692666 | Msa0000530:intron | 35.0% |
| AAACTTGTGGTGTAAGTCAT+TGG | + | chr1_1:1692825-1692844 | None:intergenic | 35.0% | |
| ! | TTTTGCACATTGAAAGCAGA+GGG | + | chr1_1:1692889-1692908 | None:intergenic | 35.0% |
| ! | TTTTTGCACATTGAAAGCAG+AGG | + | chr1_1:1692890-1692909 | None:intergenic | 35.0% |
| !! | TTATTTTGTTTGCAGAGGCT+AGG | - | chr1_1:1693112-1693131 | Msa0000530:CDS | 35.0% |
| ! | CAGAACTTGTCTCAAGATTT+TGG | - | chr1_1:1691668-1691687 | Msa0000530:intron | 35.0% |
| ! | TCTTTAGATCCTTTTCGCTA+AGG | - | chr1_1:1691869-1691888 | Msa0000530:intron | 35.0% |
| ATTACAATGCCTTAGCGAAA+AGG | + | chr1_1:1691881-1691900 | None:intergenic | 35.0% | |
| TAATGTTCATATGCCAGACA+TGG | - | chr1_1:1692326-1692345 | Msa0000530:intron | 35.0% | |
| TTTAAGCTTCTTGAGCTTGT+TGG | - | chr1_1:1692354-1692373 | Msa0000530:intron | 35.0% | |
| TGAAAATGATGATCCTAAGC+TGG | - | chr1_1:1692496-1692515 | Msa0000530:CDS | 35.0% | |
| ATTGCTTTCATAACCAGCTT+AGG | + | chr1_1:1692512-1692531 | None:intergenic | 35.0% | |
| GAAACCTGTTCAATTGAAAG+AGG | - | chr1_1:1692559-1692578 | Msa0000530:intron | 35.0% | |
| TTCACCTCTTTCAATTGAAC+AGG | + | chr1_1:1692566-1692585 | None:intergenic | 35.0% | |
| TGAAAGAGGTGAAGATGATT+TGG | - | chr1_1:1692573-1692592 | Msa0000530:intron | 35.0% | |
| CCATTTCCACTATCAGAATT+AGG | + | chr1_1:1692650-1692669 | None:intergenic | 35.0% | |
| !! | CCTAATTCTGATAGTGGAAA+TGG | - | chr1_1:1692647-1692666 | Msa0000530:intron | 35.0% |
| AAACTTGTGGTGTAAGTCAT+TGG | + | chr1_1:1692825-1692844 | None:intergenic | 35.0% | |
| ! | TTTTGCACATTGAAAGCAGA+GGG | + | chr1_1:1692889-1692908 | None:intergenic | 35.0% |
| ! | TTTTTGCACATTGAAAGCAG+AGG | + | chr1_1:1692890-1692909 | None:intergenic | 35.0% |
| !! | TTATTTTGTTTGCAGAGGCT+AGG | - | chr1_1:1693112-1693131 | Msa0000530:CDS | 35.0% |
| !! | TTTTGGAGAGACTTCTCGAA+AGG | - | chr1_1:1691685-1691704 | Msa0000530:intron | 40.0% |
| TTGTTGGATTCATTCGATGC+AGG | - | chr1_1:1692161-1692180 | Msa0000530:CDS | 40.0% | |
| AGCTTAAATCCATCCATGTC+TGG | + | chr1_1:1692342-1692361 | None:intergenic | 40.0% | |
| !! | TGAGCTTGTTGGACTTGAAA+TGG | - | chr1_1:1692365-1692384 | Msa0000530:intron | 40.0% |
| GATGTGCCTAATTCTGATAG+TGG | - | chr1_1:1692641-1692660 | Msa0000530:intron | 40.0% | |
| CTTGTCGCGGTTAACAAATT+TGG | - | chr1_1:1692845-1692864 | Msa0000530:intron | 40.0% | |
| !! | CGTCATAGCAAGAGTATTTG+AGG | + | chr1_1:1693056-1693075 | None:intergenic | 40.0% |
| !! | TTTTGGAGAGACTTCTCGAA+AGG | - | chr1_1:1691685-1691704 | Msa0000530:intron | 40.0% |
| TTGTTGGATTCATTCGATGC+AGG | - | chr1_1:1692161-1692180 | Msa0000530:CDS | 40.0% | |
| AGCTTAAATCCATCCATGTC+TGG | + | chr1_1:1692342-1692361 | None:intergenic | 40.0% | |
| !! | TGAGCTTGTTGGACTTGAAA+TGG | - | chr1_1:1692365-1692384 | Msa0000530:intron | 40.0% |
| GATGTGCCTAATTCTGATAG+TGG | - | chr1_1:1692641-1692660 | Msa0000530:intron | 40.0% | |
| CTTGTCGCGGTTAACAAATT+TGG | - | chr1_1:1692845-1692864 | Msa0000530:intron | 40.0% | |
| !! | CGTCATAGCAAGAGTATTTG+AGG | + | chr1_1:1693056-1693075 | None:intergenic | 40.0% |
| !! | CTCGAAAGGTGTCAATACCA+TGG | - | chr1_1:1691699-1691718 | Msa0000530:intron | 45.0% |
| GCAGCGACACTTCTAATCTA+AGG | + | chr1_1:1691828-1691847 | None:intergenic | 45.0% | |
| ! | TTCAGTGCTATTCGTGCACT+TGG | + | chr1_1:1692264-1692283 | None:intergenic | 45.0% |
| GTTCATATGCCAGACATGGA+TGG | - | chr1_1:1692330-1692349 | Msa0000530:intron | 45.0% | |
| CAACGAAATCGAGGCTTCTT+CGG | + | chr1_1:1692800-1692819 | None:intergenic | 45.0% | |
| TCATTGGACCAACGAAATCG+AGG | + | chr1_1:1692809-1692828 | None:intergenic | 45.0% | |
| ACACCACAAGTTTCTTGTCG+CGG | - | chr1_1:1692832-1692851 | Msa0000530:intron | 45.0% | |
| TAACCGCGACAAGAAACTTG+TGG | + | chr1_1:1692838-1692857 | None:intergenic | 45.0% | |
| !! | CTCGAAAGGTGTCAATACCA+TGG | - | chr1_1:1691699-1691718 | Msa0000530:intron | 45.0% |
| GCAGCGACACTTCTAATCTA+AGG | + | chr1_1:1691828-1691847 | None:intergenic | 45.0% | |
| ! | TTCAGTGCTATTCGTGCACT+TGG | + | chr1_1:1692264-1692283 | None:intergenic | 45.0% |
| GTTCATATGCCAGACATGGA+TGG | - | chr1_1:1692330-1692349 | Msa0000530:intron | 45.0% | |
| CAACGAAATCGAGGCTTCTT+CGG | + | chr1_1:1692800-1692819 | None:intergenic | 45.0% | |
| TCATTGGACCAACGAAATCG+AGG | + | chr1_1:1692809-1692828 | None:intergenic | 45.0% | |
| ACACCACAAGTTTCTTGTCG+CGG | - | chr1_1:1692832-1692851 | Msa0000530:intron | 45.0% | |
| TAACCGCGACAAGAAACTTG+TGG | + | chr1_1:1692838-1692857 | None:intergenic | 45.0% | |
| TATTCGTGCACTTGGAGCAG+TGG | + | chr1_1:1692256-1692275 | None:intergenic | 50.0% | |
| CGAAGAAGCCTCGATTTCGT+TGG | - | chr1_1:1692798-1692817 | Msa0000530:intron | 50.0% | |
| TATTCGTGCACTTGGAGCAG+TGG | + | chr1_1:1692256-1692275 | None:intergenic | 50.0% | |
| CGAAGAAGCCTCGATTTCGT+TGG | - | chr1_1:1692798-1692817 | Msa0000530:intron | 50.0% | |
| CGAGGCTTCTTCGGCGCTGT+TGG | + | chr1_1:1692791-1692810 | None:intergenic | 65.0% | |
| CGAGGCTTCTTCGGCGCTGT+TGG | + | chr1_1:1692791-1692810 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 1691618 | 1693185 | 1691618 | ID=Msa0000530;Name=Msa0000530 |
| chr1_1 | mRNA | 1691618 | 1693185 | 1691618 | ID=Msa0000530-mRNA-1;Parent=Msa0000530;Name=Msa0000530-mRNA-1;_AED=0.06;_eAED=0.07;_QI=0|0|0|1|0.75|0.6|5|0|229 |
| chr1_1 | exon | 1693083 | 1693185 | 1693083 | ID=Msa0000530-mRNA-1:exon:305;Parent=Msa0000530-mRNA-1 |
| chr1_1 | exon | 1692401 | 1692553 | 1692401 | ID=Msa0000530-mRNA-1:exon:304;Parent=Msa0000530-mRNA-1 |
| chr1_1 | exon | 1692144 | 1692314 | 1692144 | ID=Msa0000530-mRNA-1:exon:303;Parent=Msa0000530-mRNA-1 |
| chr1_1 | exon | 1691928 | 1692128 | 1691928 | ID=Msa0000530-mRNA-1:exon:302;Parent=Msa0000530-mRNA-1 |
| chr1_1 | exon | 1691618 | 1691676 | 1691618 | ID=Msa0000530-mRNA-1:exon:301;Parent=Msa0000530-mRNA-1 |
| chr1_1 | CDS | 1693083 | 1693185 | 1693083 | ID=Msa0000530-mRNA-1:cds;Parent=Msa0000530-mRNA-1 |
| chr1_1 | CDS | 1692401 | 1692553 | 1692401 | ID=Msa0000530-mRNA-1:cds;Parent=Msa0000530-mRNA-1 |
| chr1_1 | CDS | 1692144 | 1692314 | 1692144 | ID=Msa0000530-mRNA-1:cds;Parent=Msa0000530-mRNA-1 |
| chr1_1 | CDS | 1691928 | 1692128 | 1691928 | ID=Msa0000530-mRNA-1:cds;Parent=Msa0000530-mRNA-1 |
| chr1_1 | CDS | 1691618 | 1691676 | 1691618 | ID=Msa0000530-mRNA-1:cds;Parent=Msa0000530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
