AlfalfaGEDB | Msa0001140

M. sativa cultivar zhongmu-4 / Msa0001140

KEGG: K09422
GO: GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006935 GO:0007275 GO:0008150 GO:0009553 GO:0009605 GO:0009856 GO:0009889 GO:0010183 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040011 GO:0042221 GO:0042330 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0044706 GO:0045595 GO:0045691 GO:0045697 GO:0048229 GO:0048856 GO:0048868 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0050918 GO:0051171 GO:0051239 GO:0051252 GO:0051704 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000112 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0001140	XP_013453883.1	88.430	242	10	1	35	258	1	242	5.37e-151	431

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0001140	sp\|Q9S7L2\|MYB98_ARATH	50.704	213	68	6	48	232	212	415	1.75e-56	189

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0001140	A0A072UDS4	88.430	242	10	1	35	258	1	242	2.56e-151	431

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TFs/TRs:

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Gene ID	Type	Classification
Msa0001140	TF	MYB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0001140	MtrunA17_Chr5g0421201	93.548	155	10	0	104	258	29	183	4.36e-102	295
Msa0001140	MtrunA17_Chr3g0117511	49.435	354	76	13	3	258	84	432	1.17e-96	290
Msa0001140	MtrunA17_Chr4g0058991	49.084	273	86	8	29	254	185	451	1.54e-68	218
Msa0001140	MtrunA17_Chr7g0228531	40.529	227	102	6	50	256	217	430	8.58e-43	150
Msa0001140	MtrunA17_Chr5g0429661	39.024	205	93	3	51	232	120	315	4.33e-41	144
Msa0001140	MtrunA17_Chr7g0228481	38.496	226	106	6	50	255	217	429	4.89e-35	130
Msa0001140	MtrunA17_Chr7g0238631	51.456	103	32	1	51	135	111	213	8.47e-29	114
Msa0001140	MtrunA17_Chr1g0157731	48.544	103	35	1	51	135	89	191	5.73e-28	112
Msa0001140	MtrunA17_Chr3g0139671	46.078	102	37	1	51	134	83	184	1.80e-27	110
Msa0001140	MtrunA17_Chr7g0228401	39.474	152	46	3	50	155	252	403	2.47e-26	107

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0001140	AT4G18770.1	50.704	213	68	6	48	232	212	415	1.78e-57	189
Msa0001140	AT5G58850.1	40.316	253	92	9	13	221	57	294	6.43e-42	148
Msa0001140	AT3G27785.1	50.000	146	44	3	39	155	171	316	1.09e-39	142
Msa0001140	AT5G11050.1	60.909	110	25	1	50	141	102	211	1.32e-37	137
Msa0001140	AT5G40360.1	47.328	131	46	2	51	158	156	286	3.23e-33	124
Msa0001140	AT3G09370.2	46.457	127	43	3	30	136	117	238	5.52e-30	117
Msa0001140	AT3G09370.1	48.718	117	37	2	30	128	112	223	5.70e-30	117
Msa0001140	AT3G09370.3	45.968	124	44	2	30	135	125	243	7.96e-30	117
Msa0001140	AT5G11510.3	34.715	193	86	5	51	215	79	259	3.60e-29	116
Msa0001140	AT5G11510.1	34.715	193	86	5	51	215	79	259	3.60e-29	116

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Find 43 sgRNAs with CRISPR-Local

Find 233 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCAATTAAGAACCAT+TGG	0.528712	1_1:+2757507	Msa0001140:CDS
AAACAGGTTGTTGATAAATT+TGG	0.222494	1_1:+2756379	Msa0001140:intron
AACAATATGGATTGAGAAAA+TGG	0.259457	1_1:+2756405	Msa0001140:CDS
AAGATTGCCAAAAGGTTACC+TGG	0.505167	1_1:+2757476	Msa0001140:CDS
AATAAGTCCAACATTGTAAA+AGG	0.302515	1_1:+2756236	Msa0001140:CDS
AATGGACACTAGAAGAAGAT+AGG	0.491531	1_1:+2756261	Msa0001140:CDS
AATGGGTAAAGATTGCCAAA+AGG	0.578915	1_1:+2757468	Msa0001140:CDS
AATGTTGGACTTATTGTTTC+TGG	0.208598	1_1:-2756228	None:intergenic
ACTGAGCTGATATTGTGCTT+TGG	0.426869	1_1:-2757691	None:intergenic
AGATTGCCAAAAGGTTACCT+GGG	0.630842	1_1:+2757477	Msa0001140:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTATCATGGTATAATTTGGT+TGG	-	chr1_1:2754006-2754025	None:intergenic	30.0%
AGTGGTATCATGGTATAATT+TGG	-	chr1_1:2754010-2754029	None:intergenic	30.0%
CAACTTAAAAAGTGGTATCA+TGG	-	chr1_1:2754020-2754039	None:intergenic	30.0%
TATAAGAGTTTAGTAGTGGT+GGG	-	chr1_1:2754197-2754216	None:intergenic	30.0%
TTATAAGAGTTTAGTAGTGG+TGG	-	chr1_1:2754198-2754217	None:intergenic	30.0%
ACTCTGTTTAGTTACTAGTA+TGG	-	chr1_1:2754368-2754387	None:intergenic	30.0%
CAATGCTCAAACAAAACAAT+GGG	+	chr1_1:2754565-2754584	Msa0001140:intron	30.0%
ATCAAAATAGTGCGTATCAT+AGG	-	chr1_1:2754709-2754728	None:intergenic	30.0%
ATGCCAAAGGAAAATGTTAT+AGG	+	chr1_1:2754961-2754980	Msa0001140:intron	30.0%
AAATTCATTAACCACGTCAA+TGG	+	chr1_1:2755257-2755276	Msa0001140:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	2753586	2757922	2753586	ID=Msa0001140;Name=Msa0001140
chr1_1	mRNA	2753586	2757922	2753586	ID=Msa0001140-mRNA-1;Parent=Msa0001140;Name=Msa0001140-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0\|0\|0\|0.75\|0.66\|0.75\|4\|0\|258
chr1_1	exon	2753586	2753592	2753586	ID=Msa0001140-mRNA-1:exon:623;Parent=Msa0001140-mRNA-1
chr1_1	exon	2756105	2756282	2756105	ID=Msa0001140-mRNA-1:exon:624;Parent=Msa0001140-mRNA-1
chr1_1	exon	2756385	2756511	2756385	ID=Msa0001140-mRNA-1:exon:625;Parent=Msa0001140-mRNA-1
chr1_1	exon	2757458	2757922	2757458	ID=Msa0001140-mRNA-1:exon:626;Parent=Msa0001140-mRNA-1
chr1_1	CDS	2753586	2753592	2753586	ID=Msa0001140-mRNA-1:cds;Parent=Msa0001140-mRNA-1
chr1_1	CDS	2756105	2756282	2756105	ID=Msa0001140-mRNA-1:cds;Parent=Msa0001140-mRNA-1
chr1_1	CDS	2756385	2756511	2756385	ID=Msa0001140-mRNA-1:cds;Parent=Msa0001140-mRNA-1
chr1_1	CDS	2757458	2757922	2757458	ID=Msa0001140-mRNA-1:cds;Parent=Msa0001140-mRNA-1

Gene Sequence

>Msa0001140

ATGAAAGATAGTGGTAATGGTGATGCTTATGTTATGGAAAATTTCAGATTTGGAGATCATTGCTTGAACAATCATTCTTCGAGGAATACTCAAGTCTCGTGCATATCTTATTGCAAAAGAGTGGGCATGACCAGAAACAATAAGTCCAACATTGTAAAAGGACAATGGACACTAGAAGAAGATAGGTTGTTGATAAATTTGGTTGAACAATATGGATTGAGAAAATGGACTGATATTGCTCAGAAATTGCCTGGTAGAATGGGTAAACAGTGTAGAGAGCGATGGATTAATCATCTAAGGCCAGATATTAAGTTGGGAAACAAATGGGTAAAGATTGCCAAAAGGTTACCTGGGAGAACTGAAAACTCAATTAAGAACCATTGGTATGCAACAAAGAGAAGAGAATATTCAAAAAGAAAGTACCCTAGTGGAAGTACTCTTCTACAAGAATATATCAAGAGCTTGAACTTAGACCAAAAAACCCCAAAAGAGTATACAAGAAAATCTTCAACTAAAGCCAGTGACAGCGAGTGTTTGCCAACCAACCAAAGCACAATATCAGCTCAGTCTCAGAAAGCCAGTGACAGTGAGTGTTTGCTATCAAGTGGTGATTTTGATGATGATATCCTAGATATTTGTTTCGATGATAATTTGTTTCAAGATGGGTGTAGTATTGATTCTCTGTTAGATGATATGCAAATTGTTGAAGATACTATGCTTGGAGTTGATGTTAAGAAAGAGCTGGATTTGATCGAGTTTTTTTACTCAGGTCAATGA

Protein sequence

>Msa0001140

MKDSGNGDAYVMENFRFGDHCLNNHSSRNTQVSCISYCKRVGMTRNNKSNIVKGQWTLEEDRLLINLVEQYGLRKWTDIAQKLPGRMGKQCRERWINHLRPDIKLGNKWVKIAKRLPGRTENSIKNHWYATKRREYSKRKYPSGSTLLQEYIKSLNLDQKTPKEYTRKSSTKASDSECLPTNQSTISAQSQKASDSECLLSSGDFDDDILDICFDDNLFQDGCSIDSLLDDMQIVEDTMLGVDVKKELDLIEFFYSGQ*