Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0003110 | sp|Q9LQZ7|BBX21_ARATH | 43.620 | 337 | 136 | 12 | 1 | 289 | 1 | 331 | 3.85e-71 | 225 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0003110 | TF | DBB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0003110 | MtrunA17_Chr1g0155811 | 92.388 | 289 | 6 | 2 | 1 | 289 | 1 | 273 | 0.0 | 543 |
| Msa0003110 | MtrunA17_Chr3g0142221 | 44.964 | 278 | 94 | 8 | 1 | 277 | 1 | 220 | 3.82e-65 | 203 |
| Msa0003110 | MtrunA17_Chr3g0145061 | 48.276 | 203 | 94 | 3 | 1 | 192 | 1 | 203 | 1.65e-60 | 192 |
| Msa0003110 | MtrunA17_Chr4g0035651 | 50.820 | 183 | 83 | 2 | 1 | 178 | 1 | 181 | 8.62e-60 | 190 |
| Msa0003110 | MtrunA17_Chr4g0033641 | 34.629 | 283 | 136 | 8 | 1 | 277 | 1 | 240 | 1.29e-38 | 135 |
| Msa0003110 | MtrunA17_Chr2g0314671 | 39.175 | 194 | 92 | 4 | 1 | 171 | 1 | 191 | 8.99e-38 | 135 |
| Msa0003110 | MtrunA17_Chr2g0329511 | 42.775 | 173 | 78 | 3 | 1 | 173 | 1 | 152 | 1.25e-37 | 133 |
| Msa0003110 | MtrunA17_Chr5g0405151 | 34.503 | 171 | 98 | 4 | 1 | 161 | 1 | 167 | 2.75e-24 | 96.7 |
| Msa0003110 | MtrunA17_Chr1g0150471 | 46.392 | 97 | 42 | 1 | 5 | 101 | 6 | 92 | 1.56e-23 | 97.8 |
| Msa0003110 | MtrunA17_Chr4g0072871 | 45.161 | 93 | 41 | 1 | 5 | 97 | 22 | 104 | 1.35e-20 | 90.5 |
| Msa0003110 | MtrunA17_Chr3g0136701 | 41.818 | 110 | 54 | 1 | 5 | 114 | 6 | 105 | 3.91e-19 | 85.1 |
| Msa0003110 | MtrunA17_Chr7g0220721 | 41.935 | 93 | 44 | 1 | 5 | 97 | 26 | 108 | 4.94e-18 | 83.6 |
| Msa0003110 | MtrunA17_Chr7g0268691 | 37.755 | 98 | 50 | 3 | 5 | 102 | 20 | 106 | 1.77e-13 | 70.1 |
| Msa0003110 | MtrunA17_Chr5g0429341 | 32.990 | 97 | 55 | 1 | 1 | 97 | 1 | 87 | 5.58e-13 | 68.6 |
| Msa0003110 | MtrunA17_Chr3g0120711 | 34.021 | 97 | 53 | 2 | 1 | 97 | 1 | 86 | 2.44e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0003110 | AT1G75540.1 | 43.620 | 337 | 136 | 12 | 1 | 289 | 1 | 331 | 3.91e-72 | 225 |
| Msa0003110 | AT4G39070.1 | 48.768 | 203 | 77 | 3 | 1 | 176 | 1 | 203 | 1.71e-52 | 172 |
| Msa0003110 | AT1G06040.1 | 37.716 | 289 | 127 | 11 | 1 | 277 | 1 | 248 | 4.51e-42 | 145 |
| Msa0003110 | AT1G06040.2 | 44.199 | 181 | 79 | 4 | 1 | 177 | 1 | 163 | 3.44e-40 | 138 |
| Msa0003110 | AT1G78600.1 | 38.049 | 205 | 115 | 6 | 1 | 204 | 1 | 194 | 9.72e-37 | 133 |
| Msa0003110 | AT2G31380.1 | 34.173 | 278 | 140 | 8 | 1 | 276 | 1 | 237 | 1.00e-36 | 131 |
| Msa0003110 | AT1G78600.2 | 38.049 | 205 | 115 | 6 | 1 | 204 | 1 | 194 | 1.43e-36 | 133 |
| Msa0003110 | AT4G10240.1 | 48.837 | 129 | 57 | 2 | 1 | 124 | 1 | 125 | 3.21e-36 | 127 |
| Msa0003110 | AT4G38960.1 | 41.406 | 128 | 64 | 3 | 1 | 128 | 1 | 117 | 4.50e-23 | 94.0 |
| Msa0003110 | AT4G38960.6 | 41.406 | 128 | 64 | 3 | 1 | 128 | 1 | 117 | 4.50e-23 | 94.0 |
| Msa0003110 | AT2G24790.1 | 43.750 | 112 | 53 | 1 | 5 | 116 | 8 | 109 | 4.65e-23 | 96.7 |
| Msa0003110 | AT2G24790.2 | 43.750 | 112 | 53 | 1 | 5 | 116 | 8 | 109 | 5.99e-23 | 94.7 |
| Msa0003110 | AT2G21320.1 | 34.756 | 164 | 88 | 3 | 1 | 149 | 1 | 160 | 1.11e-22 | 92.4 |
| Msa0003110 | AT5G24930.1 | 43.299 | 97 | 45 | 1 | 5 | 101 | 6 | 92 | 1.29e-20 | 90.9 |
| Msa0003110 | AT5G15840.1 | 34.459 | 148 | 74 | 3 | 5 | 152 | 20 | 144 | 5.95e-19 | 86.3 |
| Msa0003110 | AT5G15840.2 | 34.459 | 148 | 74 | 3 | 5 | 152 | 20 | 144 | 1.27e-18 | 84.0 |
| Msa0003110 | AT3G02380.1 | 41.935 | 93 | 44 | 1 | 5 | 97 | 16 | 98 | 5.58e-18 | 83.2 |
| Msa0003110 | AT5G15850.1 | 34.400 | 125 | 72 | 1 | 5 | 129 | 12 | 126 | 1.25e-17 | 82.4 |
| Msa0003110 | AT5G57660.1 | 32.117 | 137 | 73 | 4 | 5 | 141 | 22 | 138 | 1.56e-15 | 76.3 |
| Msa0003110 | AT4G38960.3 | 33.108 | 148 | 52 | 3 | 1 | 105 | 1 | 144 | 5.78e-15 | 72.8 |
| Msa0003110 | AT1G28050.1 | 36.634 | 101 | 54 | 1 | 2 | 102 | 6 | 96 | 6.09e-14 | 72.0 |
| Msa0003110 | AT2G33500.2 | 35.000 | 100 | 55 | 1 | 3 | 102 | 10 | 99 | 2.30e-13 | 70.1 |
| Msa0003110 | AT2G33500.1 | 35.000 | 100 | 55 | 1 | 3 | 102 | 10 | 99 | 2.40e-13 | 70.1 |
| Msa0003110 | AT2G47890.3 | 40.000 | 85 | 41 | 2 | 5 | 89 | 13 | 87 | 2.10e-12 | 66.6 |
| Msa0003110 | AT2G47890.2 | 40.000 | 85 | 41 | 2 | 5 | 89 | 13 | 87 | 2.32e-12 | 65.9 |
| Msa0003110 | AT2G47890.1 | 40.000 | 85 | 41 | 2 | 5 | 89 | 13 | 87 | 2.54e-12 | 66.6 |
| Msa0003110 | AT3G07650.3 | 34.884 | 86 | 46 | 1 | 1 | 86 | 1 | 76 | 2.82e-11 | 63.9 |
| Msa0003110 | AT3G07650.2 | 34.884 | 86 | 46 | 1 | 1 | 86 | 1 | 76 | 2.82e-11 | 63.9 |
| Msa0003110 | AT3G07650.4 | 34.884 | 86 | 46 | 1 | 1 | 86 | 1 | 76 | 2.82e-11 | 63.9 |
| Msa0003110 | AT3G07650.1 | 34.884 | 86 | 46 | 1 | 1 | 86 | 1 | 76 | 2.82e-11 | 63.9 |
| Msa0003110 | AT5G48250.1 | 34.884 | 86 | 46 | 1 | 1 | 86 | 1 | 76 | 5.72e-11 | 62.8 |
Find 65 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAGATCCCCATATTATTAT+TGG | 0.137675 | 1_1:-5657426 | None:intergenic |
| ATTCTTTCCCAATAATAATA+TGG | 0.175250 | 1_1:+5657418 | Msa0003110:CDS |
| TCGGACCGCTTTGTAGATTA+TGG | 0.291781 | 1_1:-5657259 | None:intergenic |
| TTCTTTCCCAATAATAATAT+GGG | 0.326545 | 1_1:+5657419 | Msa0003110:CDS |
| GAGGGTGTTGTTTAGGAGTT+GGG | 0.330083 | 1_1:-5656558 | None:intergenic |
| TACTCCTTCACCAACATCTA+TGG | 0.332309 | 1_1:+5656956 | Msa0003110:CDS |
| CAGATCCCCATATTATTATT+GGG | 0.334863 | 1_1:-5657425 | None:intergenic |
| AGAGGGTGTTGTTTAGGAGT+TGG | 0.337165 | 1_1:-5656559 | None:intergenic |
| CCAATAATAATATGGGGATC+TGG | 0.340677 | 1_1:+5657426 | Msa0003110:CDS |
| AAGAGAGAGACGGTGGTGTT+TGG | 0.342293 | 1_1:-5656530 | None:intergenic |
| TCGCAGAGAGGGTGTTGTTT+AGG | 0.344263 | 1_1:-5656565 | None:intergenic |
| ATATCTCGTTCTCTTGGAAT+TGG | 0.353340 | 1_1:-5657618 | None:intergenic |
| GTTCTCTTGGAATTGGCAAC+AGG | 0.409933 | 1_1:-5657611 | None:intergenic |
| AAAATCATCAACTTGCCAAC+CGG | 0.412069 | 1_1:-5657030 | None:intergenic |
| CCAAGAGAACGAGATATCTA+TGG | 0.414135 | 1_1:+5657624 | Msa0003110:CDS |
| CCATAGATATCTCGTTCTCT+TGG | 0.429830 | 1_1:-5657624 | None:intergenic |
| TTCATCTTCACAAATAATGA+TGG | 0.443338 | 1_1:+5657478 | Msa0003110:CDS |
| CCCTCTCTGCGATATTTGTC+AGG | 0.457199 | 1_1:+5656576 | Msa0003110:CDS |
| TGTTCCCTTTGCTTTCTCCA+AGG | 0.478253 | 1_1:+5657067 | Msa0003110:CDS |
| CAATAATAATATGGGGATCT+GGG | 0.478272 | 1_1:+5657427 | Msa0003110:CDS |
| CAGAGTGAGACAACAAAGAA+AGG | 0.485986 | 1_1:+5657503 | Msa0003110:CDS |
| GTGTTTGGAAGCTAGTTTGT+TGG | 0.489476 | 1_1:-5656515 | None:intergenic |
| CATGATAGGTTTCTTCTCAC+TGG | 0.500831 | 1_1:+5656822 | Msa0003110:CDS |
| GATACATAAGGCGGCTTCAT+CGG | 0.502006 | 1_1:-5656467 | None:intergenic |
| CTTCCTTCTTCCATAGATGT+TGG | 0.505484 | 1_1:-5656966 | None:intergenic |
| TTTCAATCAAAGAAGAAGAA+GGG | 0.517732 | 1_1:-5656926 | None:intergenic |
| AACTTACACAGAAACATGAT+AGG | 0.518542 | 1_1:+5656808 | Msa0003110:CDS |
| TCATCTTCACAAATAATGAT+GGG | 0.520250 | 1_1:+5657479 | Msa0003110:CDS |
| GGTGATGAATTGTTTAATGC+TGG | 0.521388 | 1_1:+5657374 | Msa0003110:CDS |
| AAAGCAGCATCAACAAATCA+AGG | 0.524782 | 1_1:+5657540 | Msa0003110:CDS |
| GCATCAACAAATCAAGGTTG+AGG | 0.540346 | 1_1:+5657546 | Msa0003110:CDS |
| GACTTGGTAGTAGCTGAAGA+AGG | 0.541974 | 1_1:-5656894 | None:intergenic |
| AGAGAAGGTGGTGGTGCTTG+AGG | 0.542822 | 1_1:-5657452 | None:intergenic |
| CATCAACAAATCAAGGTTGA+GGG | 0.544246 | 1_1:+5657547 | Msa0003110:CDS |
| TCACCAACATCTATGGAAGA+AGG | 0.545672 | 1_1:+5656963 | Msa0003110:CDS |
| GTTTGTTGGCGTGGTGGACA+CGG | 0.547515 | 1_1:-5656501 | None:intergenic |
| AAAACCTTGGAGAAAGCAAA+GGG | 0.550319 | 1_1:-5657071 | None:intergenic |
| AAATCATCAACTTGCCAACC+GGG | 0.556383 | 1_1:-5657029 | None:intergenic |
| GTGGTCGCAGTCGATACATA+AGG | 0.557663 | 1_1:-5656479 | None:intergenic |
| AGAAGGGACAAGATTTGACT+TGG | 0.557767 | 1_1:-5656910 | None:intergenic |
| AGAGTGAGACAACAAAGAAA+GGG | 0.571772 | 1_1:+5657504 | Msa0003110:CDS |
| GAAAACCTTGGAGAAAGCAA+AGG | 0.575554 | 1_1:-5657072 | None:intergenic |
| TGATTGAAACTCTACCCGGT+TGG | 0.584818 | 1_1:+5657015 | Msa0003110:CDS |
| TACTTGATTGAAACTCTACC+CGG | 0.593207 | 1_1:+5657011 | Msa0003110:CDS |
| ACATCTATGGAAGAAGGAAG+TGG | 0.599359 | 1_1:+5656969 | Msa0003110:CDS |
| TGTGAAGATGAATATAGAGA+AGG | 0.600444 | 1_1:-5657467 | None:intergenic |
| GAAGATGAATATAGAGAAGG+TGG | 0.603622 | 1_1:-5657464 | None:intergenic |
| TTGGGTTATGAAGAGAGAGA+CGG | 0.603803 | 1_1:-5656540 | None:intergenic |
| TCTTCCATAGATGTTGGTGA+AGG | 0.607403 | 1_1:-5656960 | None:intergenic |
| AAATTCAGCTAATACAGCCT+CGG | 0.614001 | 1_1:+5657233 | Msa0003110:CDS |
| CCTGACAAATATCGCAGAGA+GGG | 0.617757 | 1_1:-5656576 | None:intergenic |
| TCTTTCCCAATAATAATATG+GGG | 0.620377 | 1_1:+5657420 | Msa0003110:CDS |
| TGGAAGCTAGTTTGTTGGCG+TGG | 0.623271 | 1_1:-5656510 | None:intergenic |
| ACATAAGGCGGCTTCATCGG+CGG | 0.633059 | 1_1:-5656464 | None:intergenic |
| AAGCTAGTTTGTTGGCGTGG+TGG | 0.634687 | 1_1:-5656507 | None:intergenic |
| TTTGTAGATTATGGCGACCG+AGG | 0.641272 | 1_1:-5657250 | None:intergenic |
| GGTTATGAAGAGAGAGACGG+TGG | 0.649053 | 1_1:-5656537 | None:intergenic |
| CATCTTCACAAATAATGATG+GGG | 0.650089 | 1_1:+5657480 | Msa0003110:CDS |
| GATGAATATAGAGAAGGTGG+TGG | 0.651333 | 1_1:-5657461 | None:intergenic |
| TCTATGGAAGAAGGAAGTGG+TGG | 0.656402 | 1_1:+5656972 | Msa0003110:CDS |
| TTGGCAACAGGACTAATCTG+TGG | 0.670590 | 1_1:-5657599 | None:intergenic |
| ACCTGACAAATATCGCAGAG+AGG | 0.707817 | 1_1:-5656577 | None:intergenic |
| GTCGCAGTCGATACATAAGG+CGG | 0.712422 | 1_1:-5656476 | None:intergenic |
| GGTCGCCATAATCTACAAAG+CGG | 0.718055 | 1_1:+5657254 | Msa0003110:CDS |
| TGTTGGCGTGGTGGACACGG+TGG | 0.747579 | 1_1:-5656498 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAGTTTAAATATAATTGAT+TGG | + | chr1_1:5657316-5657335 | Msa0003110:intron | 10.0% |
| !! | TAAGTTTAAATATAATTGAT+TGG | + | chr1_1:5657316-5657335 | Msa0003110:intron | 10.0% |
| !!! | ACTTAACTTTTTCTTATATT+CGG | + | chr1_1:5656665-5656684 | Msa0003110:intron | 15.0% |
| !!! | ACTTAACTTTTTCTTATATT+CGG | + | chr1_1:5656665-5656684 | Msa0003110:intron | 15.0% |
| !! | ACAAAATATAAGAGAAAGTT+AGG | - | chr1_1:5656621-5656640 | None:intergenic | 20.0% |
| !!! | GACTTTATTTTTCTTGTTTT+AGG | + | chr1_1:5656704-5656723 | Msa0003110:intron | 20.0% |
| !! | ATTCTTTCCCAATAATAATA+TGG | + | chr1_1:5657418-5657437 | Msa0003110:CDS | 20.0% |
| !! | TTCTTTCCCAATAATAATAT+GGG | + | chr1_1:5657419-5657438 | Msa0003110:CDS | 20.0% |
| !! | ACAAAATATAAGAGAAAGTT+AGG | - | chr1_1:5656621-5656640 | None:intergenic | 20.0% |
| !!! | GACTTTATTTTTCTTGTTTT+AGG | + | chr1_1:5656704-5656723 | Msa0003110:intron | 20.0% |
| !! | ATTCTTTCCCAATAATAATA+TGG | + | chr1_1:5657418-5657437 | Msa0003110:CDS | 20.0% |
| !! | TTCTTTCCCAATAATAATAT+GGG | + | chr1_1:5657419-5657438 | Msa0003110:CDS | 20.0% |
| ! | TTTCAATCAAAGAAGAAGAA+GGG | - | chr1_1:5656929-5656948 | None:intergenic | 25.0% |
| !! | TTTTCAATCAAAGAAGAAGA+AGG | - | chr1_1:5656930-5656949 | None:intergenic | 25.0% |
| ! | ATTAATATTGAGTAAGAGAG+AGG | - | chr1_1:5657108-5657127 | None:intergenic | 25.0% |
| ! | TCTTTCCCAATAATAATATG+GGG | + | chr1_1:5657420-5657439 | Msa0003110:CDS | 25.0% |
| ! | TTCATCTTCACAAATAATGA+TGG | + | chr1_1:5657478-5657497 | Msa0003110:CDS | 25.0% |
| ! | TCATCTTCACAAATAATGAT+GGG | + | chr1_1:5657479-5657498 | Msa0003110:CDS | 25.0% |
| ! | TTTCAATCAAAGAAGAAGAA+GGG | - | chr1_1:5656929-5656948 | None:intergenic | 25.0% |
| !! | TTTTCAATCAAAGAAGAAGA+AGG | - | chr1_1:5656930-5656949 | None:intergenic | 25.0% |
| ! | ATTAATATTGAGTAAGAGAG+AGG | - | chr1_1:5657108-5657127 | None:intergenic | 25.0% |
| ! | TCTTTCCCAATAATAATATG+GGG | + | chr1_1:5657420-5657439 | Msa0003110:CDS | 25.0% |
| ! | TTCATCTTCACAAATAATGA+TGG | + | chr1_1:5657478-5657497 | Msa0003110:CDS | 25.0% |
| ! | TCATCTTCACAAATAATGAT+GGG | + | chr1_1:5657479-5657498 | Msa0003110:CDS | 25.0% |
| TGATGTATGCAACAAAAATG+AGG | + | chr1_1:5656426-5656445 | Msa0003110:CDS | 30.0% | |
| AACTTACACAGAAACATGAT+AGG | + | chr1_1:5656808-5656827 | Msa0003110:CDS | 30.0% | |
| !! | TTGATTGGTTTGTTTGTGAT+TGG | + | chr1_1:5657331-5657350 | Msa0003110:intron | 30.0% |
| CAGATCCCCATATTATTATT+GGG | - | chr1_1:5657428-5657447 | None:intergenic | 30.0% | |
| CAATAATAATATGGGGATCT+GGG | + | chr1_1:5657427-5657446 | Msa0003110:CDS | 30.0% | |
| TGTGAAGATGAATATAGAGA+AGG | - | chr1_1:5657470-5657489 | None:intergenic | 30.0% | |
| CATCTTCACAAATAATGATG+GGG | + | chr1_1:5657480-5657499 | Msa0003110:CDS | 30.0% | |
| TGATGTATGCAACAAAAATG+AGG | + | chr1_1:5656426-5656445 | Msa0003110:CDS | 30.0% | |
| AACTTACACAGAAACATGAT+AGG | + | chr1_1:5656808-5656827 | Msa0003110:CDS | 30.0% | |
| !! | TTGATTGGTTTGTTTGTGAT+TGG | + | chr1_1:5657331-5657350 | Msa0003110:intron | 30.0% |
| CAGATCCCCATATTATTATT+GGG | - | chr1_1:5657428-5657447 | None:intergenic | 30.0% | |
| CAATAATAATATGGGGATCT+GGG | + | chr1_1:5657427-5657446 | Msa0003110:CDS | 30.0% | |
| TGTGAAGATGAATATAGAGA+AGG | - | chr1_1:5657470-5657489 | None:intergenic | 30.0% | |
| CATCTTCACAAATAATGATG+GGG | + | chr1_1:5657480-5657499 | Msa0003110:CDS | 30.0% | |
| ! | TTTTGTTGCATACATCACAC+TGG | - | chr1_1:5656423-5656442 | None:intergenic | 35.0% |
| TACTTGATTGAAACTCTACC+CGG | + | chr1_1:5657011-5657030 | Msa0003110:CDS | 35.0% | |
| AAAATCATCAACTTGCCAAC+CGG | - | chr1_1:5657033-5657052 | None:intergenic | 35.0% | |
| AAAACCTTGGAGAAAGCAAA+GGG | - | chr1_1:5657074-5657093 | None:intergenic | 35.0% | |
| GGTAGAAAATAGGAAAACCT+TGG | - | chr1_1:5657087-5657106 | None:intergenic | 35.0% | |
| GTAAGAGAGAGGTAGAAAAT+AGG | - | chr1_1:5657097-5657116 | None:intergenic | 35.0% | |
| AAATTCAGCTAATACAGCCT+CGG | + | chr1_1:5657233-5657252 | Msa0003110:CDS | 35.0% | |
| GGTGATGAATTGTTTAATGC+TGG | + | chr1_1:5657374-5657393 | Msa0003110:CDS | 35.0% | |
| CCAGATCCCCATATTATTAT+TGG | - | chr1_1:5657429-5657448 | None:intergenic | 35.0% | |
| CCAATAATAATATGGGGATC+TGG | + | chr1_1:5657426-5657445 | Msa0003110:CDS | 35.0% | |
| GAAGATGAATATAGAGAAGG+TGG | - | chr1_1:5657467-5657486 | None:intergenic | 35.0% | |
| AGAGTGAGACAACAAAGAAA+GGG | + | chr1_1:5657504-5657523 | Msa0003110:CDS | 35.0% | |
| AAAGCAGCATCAACAAATCA+AGG | + | chr1_1:5657540-5657559 | Msa0003110:CDS | 35.0% | |
| CATCAACAAATCAAGGTTGA+GGG | + | chr1_1:5657547-5657566 | Msa0003110:CDS | 35.0% | |
| ATATCTCGTTCTCTTGGAAT+TGG | - | chr1_1:5657621-5657640 | None:intergenic | 35.0% | |
| ! | TTTTGTTGCATACATCACAC+TGG | - | chr1_1:5656423-5656442 | None:intergenic | 35.0% |
| TACTTGATTGAAACTCTACC+CGG | + | chr1_1:5657011-5657030 | Msa0003110:CDS | 35.0% | |
| AAAATCATCAACTTGCCAAC+CGG | - | chr1_1:5657033-5657052 | None:intergenic | 35.0% | |
| AAAACCTTGGAGAAAGCAAA+GGG | - | chr1_1:5657074-5657093 | None:intergenic | 35.0% | |
| GGTAGAAAATAGGAAAACCT+TGG | - | chr1_1:5657087-5657106 | None:intergenic | 35.0% | |
| GTAAGAGAGAGGTAGAAAAT+AGG | - | chr1_1:5657097-5657116 | None:intergenic | 35.0% | |
| AAATTCAGCTAATACAGCCT+CGG | + | chr1_1:5657233-5657252 | Msa0003110:CDS | 35.0% | |
| GGTGATGAATTGTTTAATGC+TGG | + | chr1_1:5657374-5657393 | Msa0003110:CDS | 35.0% | |
| CCAGATCCCCATATTATTAT+TGG | - | chr1_1:5657429-5657448 | None:intergenic | 35.0% | |
| CCAATAATAATATGGGGATC+TGG | + | chr1_1:5657426-5657445 | Msa0003110:CDS | 35.0% | |
| GAAGATGAATATAGAGAAGG+TGG | - | chr1_1:5657467-5657486 | None:intergenic | 35.0% | |
| AGAGTGAGACAACAAAGAAA+GGG | + | chr1_1:5657504-5657523 | Msa0003110:CDS | 35.0% | |
| AAAGCAGCATCAACAAATCA+AGG | + | chr1_1:5657540-5657559 | Msa0003110:CDS | 35.0% | |
| CATCAACAAATCAAGGTTGA+GGG | + | chr1_1:5657547-5657566 | Msa0003110:CDS | 35.0% | |
| ATATCTCGTTCTCTTGGAAT+TGG | - | chr1_1:5657621-5657640 | None:intergenic | 35.0% | |
| ! | GTGTTTGGAAGCTAGTTTGT+TGG | - | chr1_1:5656518-5656537 | None:intergenic | 40.0% |
| TTGGGTTATGAAGAGAGAGA+CGG | - | chr1_1:5656543-5656562 | None:intergenic | 40.0% | |
| CATGATAGGTTTCTTCTCAC+TGG | + | chr1_1:5656822-5656841 | Msa0003110:CDS | 40.0% | |
| AGAAGGGACAAGATTTGACT+TGG | - | chr1_1:5656913-5656932 | None:intergenic | 40.0% | |
| TACTCCTTCACCAACATCTA+TGG | + | chr1_1:5656956-5656975 | Msa0003110:CDS | 40.0% | |
| ! | TCTTCCATAGATGTTGGTGA+AGG | - | chr1_1:5656963-5656982 | None:intergenic | 40.0% |
| TCACCAACATCTATGGAAGA+AGG | + | chr1_1:5656963-5656982 | Msa0003110:CDS | 40.0% | |
| CTTCCTTCTTCCATAGATGT+TGG | - | chr1_1:5656969-5656988 | None:intergenic | 40.0% | |
| ACATCTATGGAAGAAGGAAG+TGG | + | chr1_1:5656969-5656988 | Msa0003110:CDS | 40.0% | |
| AAATCATCAACTTGCCAACC+GGG | - | chr1_1:5657032-5657051 | None:intergenic | 40.0% | |
| GAAAACCTTGGAGAAAGCAA+AGG | - | chr1_1:5657075-5657094 | None:intergenic | 40.0% | |
| ! | GGTTTGTTTGTGATTGGATC+TGG | + | chr1_1:5657337-5657356 | Msa0003110:intron | 40.0% |
| GATCTGGTGTATGAAATGCA+GGG | + | chr1_1:5657353-5657372 | Msa0003110:intron | 40.0% | |
| GATGAATATAGAGAAGGTGG+TGG | - | chr1_1:5657464-5657483 | None:intergenic | 40.0% | |
| CAGAGTGAGACAACAAAGAA+AGG | + | chr1_1:5657503-5657522 | Msa0003110:CDS | 40.0% | |
| GCATCAACAAATCAAGGTTG+AGG | + | chr1_1:5657546-5657565 | Msa0003110:CDS | 40.0% | |
| CCATAGATATCTCGTTCTCT+TGG | - | chr1_1:5657627-5657646 | None:intergenic | 40.0% | |
| CCAAGAGAACGAGATATCTA+TGG | + | chr1_1:5657624-5657643 | Msa0003110:CDS | 40.0% | |
| ! | GTGTTTGGAAGCTAGTTTGT+TGG | - | chr1_1:5656518-5656537 | None:intergenic | 40.0% |
| TTGGGTTATGAAGAGAGAGA+CGG | - | chr1_1:5656543-5656562 | None:intergenic | 40.0% | |
| CATGATAGGTTTCTTCTCAC+TGG | + | chr1_1:5656822-5656841 | Msa0003110:CDS | 40.0% | |
| AGAAGGGACAAGATTTGACT+TGG | - | chr1_1:5656913-5656932 | None:intergenic | 40.0% | |
| TACTCCTTCACCAACATCTA+TGG | + | chr1_1:5656956-5656975 | Msa0003110:CDS | 40.0% | |
| ! | TCTTCCATAGATGTTGGTGA+AGG | - | chr1_1:5656963-5656982 | None:intergenic | 40.0% |
| TCACCAACATCTATGGAAGA+AGG | + | chr1_1:5656963-5656982 | Msa0003110:CDS | 40.0% | |
| CTTCCTTCTTCCATAGATGT+TGG | - | chr1_1:5656969-5656988 | None:intergenic | 40.0% | |
| ACATCTATGGAAGAAGGAAG+TGG | + | chr1_1:5656969-5656988 | Msa0003110:CDS | 40.0% | |
| AAATCATCAACTTGCCAACC+GGG | - | chr1_1:5657032-5657051 | None:intergenic | 40.0% | |
| GAAAACCTTGGAGAAAGCAA+AGG | - | chr1_1:5657075-5657094 | None:intergenic | 40.0% | |
| ! | GGTTTGTTTGTGATTGGATC+TGG | + | chr1_1:5657337-5657356 | Msa0003110:intron | 40.0% |
| GATCTGGTGTATGAAATGCA+GGG | + | chr1_1:5657353-5657372 | Msa0003110:intron | 40.0% | |
| GATGAATATAGAGAAGGTGG+TGG | - | chr1_1:5657464-5657483 | None:intergenic | 40.0% | |
| CAGAGTGAGACAACAAAGAA+AGG | + | chr1_1:5657503-5657522 | Msa0003110:CDS | 40.0% | |
| GCATCAACAAATCAAGGTTG+AGG | + | chr1_1:5657546-5657565 | Msa0003110:CDS | 40.0% | |
| CCATAGATATCTCGTTCTCT+TGG | - | chr1_1:5657627-5657646 | None:intergenic | 40.0% | |
| CCAAGAGAACGAGATATCTA+TGG | + | chr1_1:5657624-5657643 | Msa0003110:CDS | 40.0% | |
| GATACATAAGGCGGCTTCAT+CGG | - | chr1_1:5656470-5656489 | None:intergenic | 45.0% | |
| !! | GAGGGTGTTGTTTAGGAGTT+GGG | - | chr1_1:5656561-5656580 | None:intergenic | 45.0% |
| !! | AGAGGGTGTTGTTTAGGAGT+TGG | - | chr1_1:5656562-5656581 | None:intergenic | 45.0% |
| CCTGACAAATATCGCAGAGA+GGG | - | chr1_1:5656579-5656598 | None:intergenic | 45.0% | |
| ACCTGACAAATATCGCAGAG+AGG | - | chr1_1:5656580-5656599 | None:intergenic | 45.0% | |
| ! | GACTTGGTAGTAGCTGAAGA+AGG | - | chr1_1:5656897-5656916 | None:intergenic | 45.0% |
| TCTATGGAAGAAGGAAGTGG+TGG | + | chr1_1:5656972-5656991 | Msa0003110:CDS | 45.0% | |
| TGATTGAAACTCTACCCGGT+TGG | + | chr1_1:5657015-5657034 | Msa0003110:CDS | 45.0% | |
| TGTTCCCTTTGCTTTCTCCA+AGG | + | chr1_1:5657067-5657086 | Msa0003110:CDS | 45.0% | |
| TTTGTAGATTATGGCGACCG+AGG | - | chr1_1:5657253-5657272 | None:intergenic | 45.0% | |
| GGTCGCCATAATCTACAAAG+CGG | + | chr1_1:5657254-5657273 | Msa0003110:CDS | 45.0% | |
| TCGGACCGCTTTGTAGATTA+TGG | - | chr1_1:5657262-5657281 | None:intergenic | 45.0% | |
| ATAATCTACAAAGCGGTCCG+AGG | + | chr1_1:5657261-5657280 | Msa0003110:intron | 45.0% | |
| GGATCTGGTGTATGAAATGC+AGG | + | chr1_1:5657352-5657371 | Msa0003110:intron | 45.0% | |
| TTGGCAACAGGACTAATCTG+TGG | - | chr1_1:5657602-5657621 | None:intergenic | 45.0% | |
| GTTCTCTTGGAATTGGCAAC+AGG | - | chr1_1:5657614-5657633 | None:intergenic | 45.0% | |
| GATACATAAGGCGGCTTCAT+CGG | - | chr1_1:5656470-5656489 | None:intergenic | 45.0% | |
| !! | GAGGGTGTTGTTTAGGAGTT+GGG | - | chr1_1:5656561-5656580 | None:intergenic | 45.0% |
| !! | AGAGGGTGTTGTTTAGGAGT+TGG | - | chr1_1:5656562-5656581 | None:intergenic | 45.0% |
| CCTGACAAATATCGCAGAGA+GGG | - | chr1_1:5656579-5656598 | None:intergenic | 45.0% | |
| ACCTGACAAATATCGCAGAG+AGG | - | chr1_1:5656580-5656599 | None:intergenic | 45.0% | |
| ! | GACTTGGTAGTAGCTGAAGA+AGG | - | chr1_1:5656897-5656916 | None:intergenic | 45.0% |
| TCTATGGAAGAAGGAAGTGG+TGG | + | chr1_1:5656972-5656991 | Msa0003110:CDS | 45.0% | |
| TGATTGAAACTCTACCCGGT+TGG | + | chr1_1:5657015-5657034 | Msa0003110:CDS | 45.0% | |
| TGTTCCCTTTGCTTTCTCCA+AGG | + | chr1_1:5657067-5657086 | Msa0003110:CDS | 45.0% | |
| TTTGTAGATTATGGCGACCG+AGG | - | chr1_1:5657253-5657272 | None:intergenic | 45.0% | |
| GGTCGCCATAATCTACAAAG+CGG | + | chr1_1:5657254-5657273 | Msa0003110:CDS | 45.0% | |
| TCGGACCGCTTTGTAGATTA+TGG | - | chr1_1:5657262-5657281 | None:intergenic | 45.0% | |
| ATAATCTACAAAGCGGTCCG+AGG | + | chr1_1:5657261-5657280 | Msa0003110:intron | 45.0% | |
| GGATCTGGTGTATGAAATGC+AGG | + | chr1_1:5657352-5657371 | Msa0003110:intron | 45.0% | |
| TTGGCAACAGGACTAATCTG+TGG | - | chr1_1:5657602-5657621 | None:intergenic | 45.0% | |
| GTTCTCTTGGAATTGGCAAC+AGG | - | chr1_1:5657614-5657633 | None:intergenic | 45.0% | |
| GTCGCAGTCGATACATAAGG+CGG | - | chr1_1:5656479-5656498 | None:intergenic | 50.0% | |
| GTGGTCGCAGTCGATACATA+AGG | - | chr1_1:5656482-5656501 | None:intergenic | 50.0% | |
| !! | AAGCTAGTTTGTTGGCGTGG+TGG | - | chr1_1:5656510-5656529 | None:intergenic | 50.0% |
| !! | TGGAAGCTAGTTTGTTGGCG+TGG | - | chr1_1:5656513-5656532 | None:intergenic | 50.0% |
| AAGAGAGAGACGGTGGTGTT+TGG | - | chr1_1:5656533-5656552 | None:intergenic | 50.0% | |
| GGTTATGAAGAGAGAGACGG+TGG | - | chr1_1:5656540-5656559 | None:intergenic | 50.0% | |
| !! | TCGCAGAGAGGGTGTTGTTT+AGG | - | chr1_1:5656568-5656587 | None:intergenic | 50.0% |
| CCCTCTCTGCGATATTTGTC+AGG | + | chr1_1:5656576-5656595 | Msa0003110:CDS | 50.0% | |
| ACATGCAGCTGATACAGCCT+CGG | - | chr1_1:5657281-5657300 | None:intergenic | 50.0% | |
| GTCGCAGTCGATACATAAGG+CGG | - | chr1_1:5656479-5656498 | None:intergenic | 50.0% | |
| GTGGTCGCAGTCGATACATA+AGG | - | chr1_1:5656482-5656501 | None:intergenic | 50.0% | |
| !! | AAGCTAGTTTGTTGGCGTGG+TGG | - | chr1_1:5656510-5656529 | None:intergenic | 50.0% |
| !! | TGGAAGCTAGTTTGTTGGCG+TGG | - | chr1_1:5656513-5656532 | None:intergenic | 50.0% |
| AAGAGAGAGACGGTGGTGTT+TGG | - | chr1_1:5656533-5656552 | None:intergenic | 50.0% | |
| GGTTATGAAGAGAGAGACGG+TGG | - | chr1_1:5656540-5656559 | None:intergenic | 50.0% | |
| !! | TCGCAGAGAGGGTGTTGTTT+AGG | - | chr1_1:5656568-5656587 | None:intergenic | 50.0% |
| CCCTCTCTGCGATATTTGTC+AGG | + | chr1_1:5656576-5656595 | Msa0003110:CDS | 50.0% | |
| ACATGCAGCTGATACAGCCT+CGG | - | chr1_1:5657281-5657300 | None:intergenic | 50.0% | |
| ACATAAGGCGGCTTCATCGG+CGG | - | chr1_1:5656467-5656486 | None:intergenic | 55.0% | |
| !! | GTTTGTTGGCGTGGTGGACA+CGG | - | chr1_1:5656504-5656523 | None:intergenic | 55.0% |
| ! | AGAGAAGGTGGTGGTGCTTG+AGG | - | chr1_1:5657455-5657474 | None:intergenic | 55.0% |
| ACATAAGGCGGCTTCATCGG+CGG | - | chr1_1:5656467-5656486 | None:intergenic | 55.0% | |
| !! | GTTTGTTGGCGTGGTGGACA+CGG | - | chr1_1:5656504-5656523 | None:intergenic | 55.0% |
| ! | AGAGAAGGTGGTGGTGCTTG+AGG | - | chr1_1:5657455-5657474 | None:intergenic | 55.0% |
| !! | TGTTGGCGTGGTGGACACGG+TGG | - | chr1_1:5656501-5656520 | None:intergenic | 65.0% |
| !! | TGTTGGCGTGGTGGACACGG+TGG | - | chr1_1:5656501-5656520 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 5656412 | 5657649 | 5656412 | ID=Msa0003110;Name=Msa0003110 |
| chr1_1 | mRNA | 5656412 | 5657649 | 5656412 | ID=Msa0003110-mRNA-1;Parent=Msa0003110;Name=Msa0003110-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|0.75|1|1|4|0|289 |
| chr1_1 | exon | 5656412 | 5656597 | 5656412 | ID=Msa0003110-mRNA-1:exon:1657;Parent=Msa0003110-mRNA-1 |
| chr1_1 | exon | 5656726 | 5657088 | 5656726 | ID=Msa0003110-mRNA-1:exon:1658;Parent=Msa0003110-mRNA-1 |
| chr1_1 | exon | 5657231 | 5657275 | 5657231 | ID=Msa0003110-mRNA-1:exon:1659;Parent=Msa0003110-mRNA-1 |
| chr1_1 | exon | 5657374 | 5657649 | 5657374 | ID=Msa0003110-mRNA-1:exon:1660;Parent=Msa0003110-mRNA-1 |
| chr1_1 | CDS | 5656412 | 5656597 | 5656412 | ID=Msa0003110-mRNA-1:cds;Parent=Msa0003110-mRNA-1 |
| chr1_1 | CDS | 5656726 | 5657088 | 5656726 | ID=Msa0003110-mRNA-1:cds;Parent=Msa0003110-mRNA-1 |
| chr1_1 | CDS | 5657231 | 5657275 | 5657231 | ID=Msa0003110-mRNA-1:cds;Parent=Msa0003110-mRNA-1 |
| chr1_1 | CDS | 5657374 | 5657649 | 5657374 | ID=Msa0003110-mRNA-1:cds;Parent=Msa0003110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
