Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0004150 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0004150 | MtrunA17_Chr1g0156521 | 92.701 | 411 | 22 | 2 | 1 | 411 | 1 | 403 | 0.0 | 749 |
| Msa0004150 | MtrunA17_Chr3g0114991 | 59.489 | 274 | 88 | 8 | 152 | 408 | 183 | 450 | 3.05e-106 | 321 |
| Msa0004150 | MtrunA17_Chr4g0042091 | 50.833 | 240 | 105 | 3 | 179 | 408 | 200 | 436 | 1.10e-69 | 226 |
| Msa0004150 | MtrunA17_Chr3g0104431 | 43.396 | 265 | 123 | 10 | 164 | 409 | 133 | 389 | 3.04e-58 | 195 |
| Msa0004150 | MtrunA17_Chr2g0280501 | 34.383 | 381 | 221 | 10 | 45 | 408 | 8 | 376 | 2.21e-54 | 184 |
| Msa0004150 | MtrunA17_Chr5g0399041 | 40.097 | 207 | 100 | 7 | 206 | 409 | 105 | 290 | 6.54e-37 | 136 |
| Msa0004150 | MtrunA17_Chr4g0056461 | 40.609 | 197 | 86 | 6 | 217 | 409 | 106 | 275 | 1.09e-36 | 135 |
| Msa0004150 | MtrunA17_Chr8g0376191 | 39.766 | 171 | 88 | 4 | 248 | 409 | 2 | 166 | 4.68e-32 | 119 |
| Msa0004150 | MtrunA17_Chr2g0280521 | 48.113 | 106 | 55 | 0 | 213 | 318 | 10 | 115 | 4.01e-25 | 99.4 |
| Msa0004150 | MtrunA17_Chr5g0445321 | 32.124 | 193 | 114 | 7 | 222 | 407 | 1 | 183 | 3.84e-24 | 98.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0004150 | AT1G75710.1 | 59.267 | 464 | 131 | 13 | 1 | 410 | 1 | 460 | 2.73e-168 | 480 |
| Msa0004150 | AT4G27240.1 | 39.070 | 430 | 196 | 13 | 27 | 408 | 19 | 430 | 7.83e-73 | 234 |
| Msa0004150 | AT5G54630.1 | 49.388 | 245 | 98 | 5 | 184 | 408 | 233 | 471 | 2.37e-68 | 224 |
| Msa0004150 | AT4G27240.2 | 38.119 | 404 | 184 | 13 | 27 | 382 | 19 | 404 | 2.63e-60 | 202 |
| Msa0004150 | AT2G29660.1 | 42.570 | 249 | 117 | 7 | 184 | 409 | 128 | 373 | 4.41e-53 | 181 |
| Msa0004150 | AT1G11490.2 | 37.109 | 256 | 137 | 7 | 173 | 408 | 113 | 364 | 5.65e-41 | 149 |
| Msa0004150 | AT1G11490.1 | 37.109 | 256 | 137 | 7 | 173 | 408 | 113 | 364 | 5.65e-41 | 149 |
| Msa0004150 | AT4G12450.1 | 34.703 | 219 | 101 | 5 | 201 | 409 | 91 | 277 | 3.26e-31 | 120 |
| Msa0004150 | AT4G22560.1 | 37.500 | 208 | 91 | 6 | 206 | 409 | 92 | 264 | 1.47e-29 | 115 |
| Msa0004150 | AT1G62520.1 | 36.585 | 205 | 104 | 7 | 207 | 409 | 100 | 280 | 1.68e-28 | 113 |
Find 123 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTTCCAAGCTTTCAATCTT+AGG | 0.165279 | 1_1:+6610502 | None:intergenic |
| CATTCCCCTACATTATTTAT+AGG | 0.167661 | 1_1:+6607543 | None:intergenic |
| AATATTGGTTACTCAAAATT+AGG | 0.189002 | 1_1:-6612071 | Msa0004150:CDS |
| TCATAAACAATTTGCAAGTT+TGG | 0.222949 | 1_1:+6607689 | None:intergenic |
| ACTCGCTCTGCATCATGTTC+TGG | 0.262275 | 1_1:-6611888 | Msa0004150:CDS |
| CTTCGATCTGTTTGCATGAT+AGG | 0.262632 | 1_1:+6612129 | None:intergenic |
| CAACGACATAATGTGCTTCT+AGG | 0.275334 | 1_1:+6610547 | None:intergenic |
| CTTCAAGAGGAATGCAGTTT+AGG | 0.296779 | 1_1:-6611824 | Msa0004150:CDS |
| TCAAAACCAAACAACAATAT+TGG | 0.300650 | 1_1:-6612086 | Msa0004150:CDS |
| GTTTATGATTGTCTTGGATA+TGG | 0.301692 | 1_1:-6607674 | Msa0004150:three_prime_UTR |
| TCCGCCCTTTGCGCCGTGCC+TGG | 0.315948 | 1_1:-6608107 | Msa0004150:CDS |
| CTGGTGTGCCGCGTGATTGC+CGG | 0.335086 | 1_1:-6607966 | Msa0004150:CDS |
| AGCTTCAGAGATGTTGTTCA+TGG | 0.341820 | 1_1:-6612026 | Msa0004150:CDS |
| TTCTTGGGGTGGGATTGTTC+AGG | 0.350003 | 1_1:+6612251 | None:intergenic |
| TTGGATTGAGAATTAATTAG+AGG | 0.355016 | 1_1:-6607502 | Msa0004150:three_prime_UTR |
| AGAGATTGAGGTTGAAGAAA+AGG | 0.362306 | 1_1:+6612355 | None:intergenic |
| CATAATGTGCTTCTAGGAAT+TGG | 0.382545 | 1_1:+6610553 | None:intergenic |
| AAAATGTACTCTCTCTTTCA+TGG | 0.393696 | 1_1:+6612327 | None:intergenic |
| ATCACCAGAGAGTAGTATCT+TGG | 0.393830 | 1_1:-6611970 | Msa0004150:CDS |
| CGCCACGCGCTTCACTTTCC+CGG | 0.395766 | 1_1:+6607947 | None:intergenic |
| CAGTTGGAGAAGATTCTAGA+AGG | 0.406367 | 1_1:-6607995 | Msa0004150:CDS |
| ATGCAGTTTAGGAAGCTATC+TGG | 0.408827 | 1_1:-6611813 | Msa0004150:CDS |
| CTCGCTCTGCATCATGTTCT+GGG | 0.411037 | 1_1:-6611887 | Msa0004150:CDS |
| ATTAGATCGCGTATCAAGAT+TGG | 0.411310 | 1_1:+6607595 | None:intergenic |
| GTTCCAAGCTTTCAATCTTA+GGG | 0.412870 | 1_1:+6610503 | None:intergenic |
| ATTGTTCAGGCAAGGAATTA+AGG | 0.414459 | 1_1:+6612264 | None:intergenic |
| CTTCCCTAAGATTGAAAGCT+TGG | 0.415664 | 1_1:-6610506 | Msa0004150:CDS |
| GAGTAACCAATATTGTTGTT+TGG | 0.425119 | 1_1:+6612080 | None:intergenic |
| GAGCTGGGTCCAGAGGATTC+AGG | 0.426596 | 1_1:-6608380 | Msa0004150:CDS |
| TTAGATCGCGTATCAAGATT+GGG | 0.428870 | 1_1:+6607596 | None:intergenic |
| CAAATTGTTTATGATTGTCT+TGG | 0.430902 | 1_1:-6607680 | Msa0004150:three_prime_UTR |
| AGGAATTAAGGAGAGCCATT+AGG | 0.432284 | 1_1:+6612276 | None:intergenic |
| TATCAAACATGCAAGGTATT+CGG | 0.435002 | 1_1:+6607765 | None:intergenic |
| GCGGAGTTTGCAACATAATC+CGG | 0.437889 | 1_1:-6608082 | Msa0004150:CDS |
| TTGTTGAACAGTTTCGGAGC+TGG | 0.439362 | 1_1:-6608396 | Msa0004150:intron |
| GATTCTATTGTGGAGAATGC+TGG | 0.440036 | 1_1:-6607879 | Msa0004150:CDS |
| ATGTTTCTGCCTGAATCCTC+TGG | 0.441608 | 1_1:+6608371 | None:intergenic |
| TGTTGAACAGTTTCGGAGCT+GGG | 0.442643 | 1_1:-6608395 | Msa0004150:intron |
| CTCTGCATTCCTCGAACCGT+TGG | 0.442678 | 1_1:+6608252 | None:intergenic |
| CGCATCCAGGCACGGCGCAA+AGG | 0.455208 | 1_1:+6608102 | None:intergenic |
| ATTGAGGTTGAAGAAAAGGT+TGG | 0.458415 | 1_1:+6612359 | None:intergenic |
| CTTTGCGCCGTGCCTGGATG+CGG | 0.466713 | 1_1:-6608101 | Msa0004150:CDS |
| AGGCACGGCGCAAAGGGCGG+AGG | 0.470822 | 1_1:+6608109 | None:intergenic |
| TTCATGGGAGAGAGAGATTG+AGG | 0.471071 | 1_1:+6612343 | None:intergenic |
| AAACATTATGTTAACCTGCT+AGG | 0.471824 | 1_1:+6611762 | None:intergenic |
| GCATCCAGGCACGGCGCAAA+GGG | 0.472172 | 1_1:+6608103 | None:intergenic |
| GATCACCTATAAATAATGTA+GGG | 0.475415 | 1_1:-6607548 | Msa0004150:three_prime_UTR |
| TGATCACCTATAAATAATGT+AGG | 0.477586 | 1_1:-6607549 | Msa0004150:three_prime_UTR |
| TTTATTTGGTCCCATGAAGA+AGG | 0.480093 | 1_1:+6612158 | None:intergenic |
| AACATCTCTGAAGCTACAAA+TGG | 0.481428 | 1_1:+6612034 | None:intergenic |
| GGTGGTGTCAGAGGAGGAAA+TGG | 0.486566 | 1_1:-6607910 | Msa0004150:CDS |
| TCACCAGAGAGTAGTATCTT+GGG | 0.490800 | 1_1:-6611969 | Msa0004150:CDS |
| ACGAACAATCCAACGGTTCG+AGG | 0.494391 | 1_1:-6608261 | Msa0004150:CDS |
| CTTGGTGGTGTTGGATGCAC+GGG | 0.495904 | 1_1:+6608217 | None:intergenic |
| AACATTATGTTAACCTGCTA+GGG | 0.496126 | 1_1:+6611763 | None:intergenic |
| GAAAGTGAAGCGCGTGGCGG+AGG | 0.498808 | 1_1:-6607943 | Msa0004150:CDS |
| TCTTGGTGGTGTTGGATGCA+CGG | 0.499082 | 1_1:+6608216 | None:intergenic |
| ACATGATCGTTGACCCTAGC+AGG | 0.499380 | 1_1:-6611776 | Msa0004150:intron |
| ACCTTGCATGTTTGATATCA+CGG | 0.501203 | 1_1:-6607759 | Msa0004150:three_prime_UTR |
| TGGTGTGCCGCGTGATTGCC+GGG | 0.506413 | 1_1:-6607965 | Msa0004150:CDS |
| CATCAAGCTGTTCGACATGC+AGG | 0.509515 | 1_1:-6610478 | Msa0004150:intron |
| AGATTCTAGAAGGGCAATGC+TGG | 0.511299 | 1_1:-6607985 | Msa0004150:CDS |
| ATAGCGATGTGCTGTGGAAA+CGG | 0.513165 | 1_1:+6608156 | None:intergenic |
| GAAACACTAGAGTTGTTCAT+AGG | 0.519636 | 1_1:-6612004 | Msa0004150:CDS |
| AAACAAGGAAGAATAGCTCT+TGG | 0.523135 | 1_1:+6607819 | None:intergenic |
| TCCAGGCACGGCGCAAAGGG+CGG | 0.528114 | 1_1:+6608106 | None:intergenic |
| CTTCTCCAACTGAATTGTCA+TGG | 0.528807 | 1_1:+6608006 | None:intergenic |
| ATTCTATTGTGGAGAATGCT+GGG | 0.532404 | 1_1:-6607878 | Msa0004150:CDS |
| CGATCTGTTTGCATGATAGG+AGG | 0.534881 | 1_1:+6612132 | None:intergenic |
| GTGAAGCGCGTGGCGGAGGA+AGG | 0.538219 | 1_1:-6607939 | Msa0004150:CDS |
| AGGTGCACCGGTGGTGTCAG+AGG | 0.541723 | 1_1:-6607919 | Msa0004150:CDS |
| GGATTGTTCGTTGTGTGTTG+TGG | 0.544405 | 1_1:+6608273 | None:intergenic |
| TTCTCCAACTGAATTGTCAT+GGG | 0.545184 | 1_1:+6608007 | None:intergenic |
| ATGTTGCAAACTCCGCATCC+AGG | 0.553814 | 1_1:+6608089 | None:intergenic |
| GATGATGATGAAGCAGTGAC+AGG | 0.553941 | 1_1:+6611918 | None:intergenic |
| GGGAAATCATCCAACGGTGG+AGG | 0.554162 | 1_1:-6611867 | Msa0004150:CDS |
| AGATAATCTTCAAATCTAGC+TGG | 0.554427 | 1_1:-6608343 | Msa0004150:CDS |
| GGCCCTACCACTACTAGCAT+TGG | 0.555926 | 1_1:+6608028 | None:intergenic |
| AGGGCCCATGACAATTCAGT+TGG | 0.558945 | 1_1:-6608011 | Msa0004150:CDS |
| AATCCACGGTGTGCCGCGGA+CGG | 0.561977 | 1_1:-6608191 | Msa0004150:CDS |
| TGTGTAGTTTCCTCCACCGT+TGG | 0.563416 | 1_1:+6611857 | None:intergenic |
| GCAAACTCCGCATCCAGGCA+CGG | 0.564278 | 1_1:+6608094 | None:intergenic |
| AAATGTACTCTCTCTTTCAT+GGG | 0.564311 | 1_1:+6612328 | None:intergenic |
| TGACCCAAGATACTACTCTC+TGG | 0.570001 | 1_1:+6611966 | None:intergenic |
| GAGGAGTTCGTTGCCGTCCG+CGG | 0.571453 | 1_1:+6608178 | None:intergenic |
| GGCGGAGGAAGGTGCACCGG+TGG | 0.572043 | 1_1:-6607928 | Msa0004150:CDS |
| GACCAATGCTAGTAGTGGTA+GGG | 0.575088 | 1_1:-6608030 | Msa0004150:CDS |
| CTCCAATGTGCAAGATTGAA+CGG | 0.576390 | 1_1:-6608307 | Msa0004150:CDS |
| AGACCAATGCTAGTAGTGGT+AGG | 0.580999 | 1_1:-6608031 | Msa0004150:CDS |
| TTGATATCACGGTGAAATTG+TGG | 0.581519 | 1_1:-6607748 | Msa0004150:three_prime_UTR |
| ATCCGTTCAATCTTGCACAT+TGG | 0.586137 | 1_1:+6608305 | None:intergenic |
| TTGCCGTCCGCGGCACACCG+TGG | 0.592005 | 1_1:+6608188 | None:intergenic |
| TGCAAGGTATTCGGTCAACA+TGG | 0.593874 | 1_1:+6607774 | None:intergenic |
| AGTTTCGGAGCTGGGTCCAG+AGG | 0.594982 | 1_1:-6608387 | Msa0004150:CDS |
| TCGTGTGCACTCGGTGCAAG+TGG | 0.597474 | 1_1:-6608134 | Msa0004150:CDS |
| TCACTTTCCCGGCAATCACG+CGG | 0.600425 | 1_1:+6607958 | None:intergenic |
| ATTTGGTCCCATGAAGAAGG+TGG | 0.601148 | 1_1:+6612161 | None:intergenic |
| CGTGGCGGAGGAAGGTGCAC+CGG | 0.604564 | 1_1:-6607931 | Msa0004150:CDS |
| TGAGAATTAATTAGAGGACG+TGG | 0.604684 | 1_1:-6607496 | None:intergenic |
| ACATCGCTATCGTGTGCACT+CGG | 0.604788 | 1_1:-6608143 | Msa0004150:CDS |
| ATTTCCTCCTCTGACACCAC+CGG | 0.605158 | 1_1:+6607912 | None:intergenic |
| AGTTGGAGAAGATTCTAGAA+GGG | 0.607565 | 1_1:-6607994 | Msa0004150:CDS |
| GGGGTGGGATTGTTCAGGCA+AGG | 0.608094 | 1_1:+6612256 | None:intergenic |
| TGCACCGGTGGTGTCAGAGG+AGG | 0.610517 | 1_1:-6607916 | Msa0004150:CDS |
| ACATCATCATCATCTTCAAG+AGG | 0.620776 | 1_1:-6611837 | Msa0004150:CDS |
| GGTGAAATTGTGGATCACTC+AGG | 0.627968 | 1_1:-6607738 | Msa0004150:three_prime_UTR |
| ATCACCTATAAATAATGTAG+GGG | 0.629852 | 1_1:-6607547 | Msa0004150:three_prime_UTR |
| GTGAAGACCAATGCTAGTAG+TGG | 0.632554 | 1_1:-6608035 | Msa0004150:CDS |
| CTATCATGCAAACAGATCGA+AGG | 0.636988 | 1_1:-6612128 | Msa0004150:CDS |
| TTGTAAATAACTACGAAACA+AGG | 0.649310 | 1_1:+6607804 | None:intergenic |
| TAGATCGCGTATCAAGATTG+GGG | 0.658256 | 1_1:+6607597 | None:intergenic |
| ACCGTGATATCAAACATGCA+AGG | 0.662133 | 1_1:+6607758 | None:intergenic |
| CGGGAAAGTGAAGCGCGTGG+CGG | 0.664636 | 1_1:-6607946 | Msa0004150:CDS |
| TGTTCTGGGAAATCATCCAA+CGG | 0.668023 | 1_1:-6611873 | Msa0004150:CDS |
| TGCCGGGAAAGTGAAGCGCG+TGG | 0.670291 | 1_1:-6607949 | Msa0004150:CDS |
| CACACGATAGCGATGTGCTG+TGG | 0.671968 | 1_1:+6608150 | None:intergenic |
| GCGATGTGCTGTGGAAACGG+AGG | 0.680201 | 1_1:+6608159 | None:intergenic |
| GTTTGCAACATAATCCGGCA+CGG | 0.681455 | 1_1:-6608077 | Msa0004150:CDS |
| ACACACAACGAACAATCCAA+CGG | 0.693116 | 1_1:-6608268 | Msa0004150:CDS |
| TTATGTCGTTGTGATAAGTG+TGG | 0.706591 | 1_1:-6610535 | Msa0004150:CDS |
| GTTCGAGGAATGCAGAGACG+CGG | 0.728390 | 1_1:-6608246 | Msa0004150:CDS |
| TCGTTGTGATAAGTGTGGAG+AGG | 0.731697 | 1_1:-6610530 | Msa0004150:CDS |
| TCTGGGAAATCATCCAACGG+TGG | 0.734107 | 1_1:-6611870 | Msa0004150:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATTTTTATTTTTTTT+GGG | + | chr1_1:6610437-6610456 | None:intergenic | 0.0% |
| !!! | ATTTTTATTTTTATTTTTTT+TGG | + | chr1_1:6610438-6610457 | None:intergenic | 0.0% |
| !!! | ATTATAGTATTTTTGATATA+TGG | - | chr1_1:6608256-6608275 | Msa0004150:CDS | 10.0% |
| !!! | CTAGTTTTTTTTTTTTTTTA+GGG | - | chr1_1:6609789-6609808 | Msa0004150:intron | 10.0% |
| !!! | ATTTTGTTTATATTTTGAAA+CGG | + | chr1_1:6610654-6610673 | None:intergenic | 10.0% |
| !!! | ATAAACAAAATTTACTTTTT+AGG | - | chr1_1:6610663-6610682 | Msa0004150:intron | 10.0% |
| !! | TGCATAAAATATATATATAT+TGG | + | chr1_1:6611405-6611424 | None:intergenic | 10.0% |
| !!! | GATTTTTATTTGTATTTTAT+TGG | - | chr1_1:6612370-6612389 | Msa0004150:five_prime_UTR | 10.0% |
| !!! | TTCATTTATTAATGTTTTTC+AGG | - | chr1_1:6608201-6608220 | Msa0004150:CDS | 15.0% |
| !! | TTACTCATAAAATAAGATAT+TGG | + | chr1_1:6608403-6608422 | None:intergenic | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+GGG | + | chr1_1:6608971-6608990 | None:intergenic | 15.0% |
| !! | AAATGCTATTAAAATTAAGT+AGG | + | chr1_1:6608970-6608989 | None:intergenic | 15.0% |
| !!! | AATTTTGCAATAATTTTTTG+CGG | + | chr1_1:6608712-6608731 | None:intergenic | 15.0% |
| !! | AGATAAAAAGTAATAAAATC+TGG | + | chr1_1:6608747-6608766 | None:intergenic | 15.0% |
| !! | TTCAAAAATTTAAGAGTTTA+AGG | - | chr1_1:6608878-6608897 | Msa0004150:intron | 15.0% |
| !! | AAATGCTATTAAAATTAAGT+AGG | - | chr1_1:6608970-6608989 | Msa0004150:intron | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+GGG | - | chr1_1:6608971-6608990 | Msa0004150:intron | 15.0% |
| !! | TTATCTAGTATTAAAAGTTA+GGG | + | chr1_1:6609045-6609064 | None:intergenic | 15.0% |
| !!! | GCTAATTAATTAATTTTCAA+AGG | + | chr1_1:6609242-6609261 | None:intergenic | 15.0% |
| !! | GATTTATTAACTCTTATATA+TGG | - | chr1_1:6609591-6609610 | Msa0004150:intron | 15.0% |
| !!! | GCTAGTTTTTTTTTTTTTTT+AGG | - | chr1_1:6609788-6609807 | Msa0004150:intron | 15.0% |
| !! | TTTATGAGTACTAATAATAA+TGG | + | chr1_1:6611061-6611080 | None:intergenic | 15.0% |
| !! | AAATGCAACAATTTAAATAA+AGG | - | chr1_1:6611169-6611188 | Msa0004150:intron | 15.0% |
| !! | AACTTTATAATTATACTAGT+AGG | + | chr1_1:6611217-6611236 | None:intergenic | 15.0% |
| !!! | ATTTGTTGATTTTATTATCT+TGG | - | chr1_1:6611441-6611460 | Msa0004150:intron | 15.0% |
| !!! | CATTTTCAACAAATTTTTGA+AGG | + | chr1_1:6607502-6607521 | None:intergenic | 20.0% |
| !!! | CTTCAAAAATTTGTTGAAAA+TGG | - | chr1_1:6607500-6607519 | Msa0004150:three_prime_UTR | 20.0% |
| !!! | AATATTGGTTACTCAAAATT+AGG | - | chr1_1:6607820-6607839 | Msa0004150:CDS | 20.0% |
| !!! | AAATACAATCAATTTTTGTG+TGG | - | chr1_1:6608334-6608353 | Msa0004150:CDS | 20.0% |
| !! | AATAACTCACTATAATTGAA+TGG | + | chr1_1:6608447-6608466 | None:intergenic | 20.0% |
| !!! | ATTTTCCAATCATAACTTTT+AGG | - | chr1_1:6608480-6608499 | Msa0004150:intron | 20.0% |
| !!! | TTTTCCAATCATAACTTTTA+GGG | - | chr1_1:6608481-6608500 | Msa0004150:intron | 20.0% |
| !! | AAACAAATTTGAATTGAGTA+GGG | + | chr1_1:6608617-6608636 | None:intergenic | 20.0% |
| !! | TAAACAAATTTGAATTGAGT+AGG | + | chr1_1:6608618-6608637 | None:intergenic | 20.0% |
| !! | CTTATCTAGTATTAAAAGTT+AGG | + | chr1_1:6609046-6609065 | None:intergenic | 20.0% |
| !! | GAAAAAAAAACCTAAAAAGT+TGG | - | chr1_1:6609152-6609171 | Msa0004150:intron | 20.0% |
| !! | TCACATATATTTCATTCTAA+AGG | - | chr1_1:6609198-6609217 | Msa0004150:intron | 20.0% |
| !!! | ATCTCATCAAAATAATCTTT+TGG | - | chr1_1:6609854-6609873 | Msa0004150:intron | 20.0% |
| !!! | TCTCATCAAAATAATCTTTT+GGG | - | chr1_1:6609855-6609874 | Msa0004150:intron | 20.0% |
| !!! | TTTTTTCATTATCTTGTTCT+TGG | - | chr1_1:6610061-6610080 | Msa0004150:intron | 20.0% |
| !! | ATTCATTAACCAATGTTAAT+TGG | + | chr1_1:6610139-6610158 | None:intergenic | 20.0% |
| !!! | ATTTTGCTTATATTTTGACA+CGG | - | chr1_1:6610761-6610780 | Msa0004150:intron | 20.0% |
| !!! | TATTCTAGCTATTTTCCTAA+TGG | - | chr1_1:6607600-6607619 | Msa0004150:three_prime_UTR | 25.0% |
| !!! | TTTGGTTTTTGTTTCTGTTT+TGG | + | chr1_1:6607697-6607716 | None:intergenic | 25.0% |
| !!! | ATGATAGGAGGTTTTTTATT+TGG | + | chr1_1:6607750-6607769 | None:intergenic | 25.0% |
| !!! | ATATTGTTGTTTGGTTTTGA+AGG | + | chr1_1:6607805-6607824 | None:intergenic | 25.0% |
| ! | TCAAAACCAAACAACAATAT+TGG | - | chr1_1:6607805-6607824 | Msa0004150:CDS | 25.0% |
| !! | AGCAATTGTTTGAAGATTTT+TGG | - | chr1_1:6608301-6608320 | Msa0004150:CDS | 25.0% |
| ! | TATGATTGGAAAATGTAGTT+GGG | + | chr1_1:6608474-6608493 | None:intergenic | 25.0% |
| ! | TTATGATTGGAAAATGTAGT+TGG | + | chr1_1:6608475-6608494 | None:intergenic | 25.0% |
| ! | TTAACCCTAAAAGTTATGAT+TGG | + | chr1_1:6608488-6608507 | None:intergenic | 25.0% |
| ! | AGTGCAGAAAAACAAAATTA+GGG | + | chr1_1:6608584-6608603 | None:intergenic | 25.0% |
| !!! | TAATCAAACTTTGTTTTAGC+AGG | - | chr1_1:6608906-6608925 | Msa0004150:intron | 25.0% |
| !!! | AATCAAACTTTGTTTTAGCA+GGG | - | chr1_1:6608907-6608926 | Msa0004150:intron | 25.0% |
| !! | TGTTTTCGTCTTAAAGAAAA+AGG | + | chr1_1:6609523-6609542 | None:intergenic | 25.0% |
| ! | TATAGTAAATGTGATACGAA+TGG | + | chr1_1:6609561-6609580 | None:intergenic | 25.0% |
| ! | GAAATTGAGAGTTAATATGT+TGG | + | chr1_1:6609654-6609673 | None:intergenic | 25.0% |
| !!! | TGATTCAATTTTAGCACAAA+GGG | + | chr1_1:6609888-6609907 | None:intergenic | 25.0% |
| !!! | ATGATTCAATTTTAGCACAA+AGG | + | chr1_1:6609889-6609908 | None:intergenic | 25.0% |
| ! | TAAAATTGAATCATGTGTGT+GGG | - | chr1_1:6609895-6609914 | Msa0004150:intron | 25.0% |
| ! | AACTTTCACAACAATTAACA+TGG | - | chr1_1:6610176-6610195 | Msa0004150:intron | 25.0% |
| !!! | TTTTTTGGGTGAATGAATAA+GGG | + | chr1_1:6610423-6610442 | None:intergenic | 25.0% |
| !!! | TTTTTTTGGGTGAATGAATA+AGG | + | chr1_1:6610424-6610443 | None:intergenic | 25.0% |
| !!! | TGTTTATATTTTGAAACGGA+GGG | + | chr1_1:6610650-6610669 | None:intergenic | 25.0% |
| !!! | TTGTTTATATTTTGAAACGG+AGG | + | chr1_1:6610651-6610670 | None:intergenic | 25.0% |
| ! | CATTTGTTTAATGATGTATG+TGG | + | chr1_1:6610727-6610746 | None:intergenic | 25.0% |
| ! | TGACTAATGATAACTTTCAA+TGG | + | chr1_1:6610823-6610842 | None:intergenic | 25.0% |
| !!! | ATTTACTTTTTTGTATCGAG+AGG | - | chr1_1:6611029-6611048 | Msa0004150:intron | 25.0% |
| !!! | TTTACTTTTTTGTATCGAGA+GGG | - | chr1_1:6611030-6611049 | Msa0004150:intron | 25.0% |
| !! | ATTAATTCACCTTGTTATGA+TGG | + | chr1_1:6611093-6611112 | None:intergenic | 25.0% |
| ! | TTGTAAATAACTACGAAACA+AGG | + | chr1_1:6612090-6612109 | None:intergenic | 25.0% |
| ! | TCATAAACAATTTGCAAGTT+TGG | + | chr1_1:6612205-6612224 | None:intergenic | 25.0% |
| ! | CAAATTGTTTATGATTGTCT+TGG | - | chr1_1:6612211-6612230 | Msa0004150:CDS | 25.0% |
| ! | TGATCACCTATAAATAATGT+AGG | - | chr1_1:6612342-6612361 | Msa0004150:five_prime_UTR | 25.0% |
| ! | GATCACCTATAAATAATGTA+GGG | - | chr1_1:6612343-6612362 | Msa0004150:five_prime_UTR | 25.0% |
| ! | ATCACCTATAAATAATGTAG+GGG | - | chr1_1:6612344-6612363 | Msa0004150:five_prime_UTR | 25.0% |
| ! | TTGGATTGAGAATTAATTAG+AGG | - | chr1_1:6612389-6612408 | Msa0004150:five_prime_UTR | 25.0% |
| AAATGTACTCTCTCTTTCAT+GGG | + | chr1_1:6607566-6607585 | None:intergenic | 30.0% | |
| AAAATGTACTCTCTCTTTCA+TGG | + | chr1_1:6607567-6607586 | None:intergenic | 30.0% | |
| !! | TTTGGTTGGTTCTTTTGTTT+GGG | + | chr1_1:6607679-6607698 | None:intergenic | 30.0% |
| !! | TTTTGGTTGGTTCTTTTGTT+TGG | + | chr1_1:6607680-6607699 | None:intergenic | 30.0% |
| !!! | GTTTTTGTTTCTGTTTTGGT+TGG | + | chr1_1:6607693-6607712 | None:intergenic | 30.0% |
| ! | GAGTAACCAATATTGTTGTT+TGG | + | chr1_1:6607814-6607833 | None:intergenic | 30.0% |
| AACATTATGTTAACCTGCTA+GGG | + | chr1_1:6608131-6608150 | None:intergenic | 30.0% | |
| AAACATTATGTTAACCTGCT+AGG | + | chr1_1:6608132-6608151 | None:intergenic | 30.0% | |
| !! | TACAAGGTCGCTATTTTATA+GGG | + | chr1_1:6609002-6609021 | None:intergenic | 30.0% |
| !! | TTACAAGGTCGCTATTTTAT+AGG | + | chr1_1:6609001-6609020 | None:intergenic | 30.0% |
| CAGTGCAGAAAAACAAAATT+AGG | + | chr1_1:6608585-6608604 | None:intergenic | 30.0% | |
| CAAGATTAGAACACTATGAA+AGG | + | chr1_1:6608844-6608863 | None:intergenic | 30.0% | |
| !! | TTACAAGGTCGCTATTTTAT+AGG | - | chr1_1:6609001-6609020 | Msa0004150:intron | 30.0% |
| !! | TACAAGGTCGCTATTTTATA+GGG | - | chr1_1:6609002-6609021 | Msa0004150:intron | 30.0% |
| ! | GTAACTACATCCAACTTTTT+AGG | + | chr1_1:6609165-6609184 | None:intergenic | 30.0% |
| ACTATTACTGCAGTCATTTA+TGG | + | chr1_1:6609676-6609695 | None:intergenic | 30.0% | |
| CTTGTATTCCAATTAATGCA+CGG | - | chr1_1:6609725-6609744 | Msa0004150:intron | 30.0% | |
| CTAAAATTGAATCATGTGTG+TGG | - | chr1_1:6609894-6609913 | Msa0004150:intron | 30.0% | |
| AAAATTGAATCATGTGTGTG+GGG | - | chr1_1:6609896-6609915 | Msa0004150:intron | 30.0% | |
| ! | CATCTTCGAAATTTGAAACA+AGG | - | chr1_1:6609936-6609955 | Msa0004150:intron | 30.0% |
| ! | TTCGAAATTTGAAACAAGGA+GGG | - | chr1_1:6609940-6609959 | Msa0004150:intron | 30.0% |
| TACTAAGATAATGACATGCA+CGG | + | chr1_1:6609982-6610001 | None:intergenic | 30.0% | |
| TTGCTAGAACCAATTAACAT+TGG | - | chr1_1:6610127-6610146 | Msa0004150:intron | 30.0% | |
| GTGATAAACTGTGAATGAAT+TGG | + | chr1_1:6610342-6610361 | None:intergenic | 30.0% | |
| !! | TTTAGAATTGATAGTGTGGA+TGG | + | chr1_1:6610569-6610588 | None:intergenic | 30.0% |
| !! | GTGATTTAGAATTGATAGTG+TGG | + | chr1_1:6610573-6610592 | None:intergenic | 30.0% |
| ! | TGGTTTTCTATCGTATGATA+TGG | + | chr1_1:6610622-6610641 | None:intergenic | 30.0% |
| ! | CCTTGGTTTGAATTTCTATA+TGG | + | chr1_1:6610893-6610912 | None:intergenic | 30.0% |
| CCATATAGAAATTCAAACCA+AGG | - | chr1_1:6610890-6610909 | Msa0004150:intron | 30.0% | |
| !!! | GAAAGTATCATGAGTTTTCA+TGG | + | chr1_1:6611313-6611332 | None:intergenic | 30.0% |
| ! | TTGTACTTGTTGAACAGTTT+CGG | - | chr1_1:6611489-6611508 | Msa0004150:intron | 30.0% |
| AGATAATCTTCAAATCTAGC+TGG | - | chr1_1:6611548-6611567 | Msa0004150:intron | 30.0% | |
| ! | TATCAAACATGCAAGGTATT+CGG | + | chr1_1:6612129-6612148 | None:intergenic | 30.0% |
| GTTTATGATTGTCTTGGATA+TGG | - | chr1_1:6612217-6612236 | Msa0004150:CDS | 30.0% | |
| CATTCCCCTACATTATTTAT+AGG | + | chr1_1:6612351-6612370 | None:intergenic | 30.0% | |
| ATTGAGGTTGAAGAAAAGGT+TGG | + | chr1_1:6607535-6607554 | None:intergenic | 35.0% | |
| AGAGATTGAGGTTGAAGAAA+AGG | + | chr1_1:6607539-6607558 | None:intergenic | 35.0% | |
| ATTGTTCAGGCAAGGAATTA+AGG | + | chr1_1:6607630-6607649 | None:intergenic | 35.0% | |
| !! | TTCTTTTGTTTGGGTTTTGG+GGG | + | chr1_1:6607670-6607689 | None:intergenic | 35.0% |
| !! | GTTCTTTTGTTTGGGTTTTG+GGG | + | chr1_1:6607671-6607690 | None:intergenic | 35.0% |
| !! | GGTTCTTTTGTTTGGGTTTT+GGG | + | chr1_1:6607672-6607691 | None:intergenic | 35.0% |
| !! | TGGTTCTTTTGTTTGGGTTT+TGG | + | chr1_1:6607673-6607692 | None:intergenic | 35.0% |
| !!! | GGTGGTTTTTGTTTTGGTTT+TGG | + | chr1_1:6607715-6607734 | None:intergenic | 35.0% |
| !! | GAAGAAGGTGGTTTTTGTTT+TGG | + | chr1_1:6607721-6607740 | None:intergenic | 35.0% |
| AACAAAAACCACCTTCTTCA+TGG | - | chr1_1:6607722-6607741 | Msa0004150:three_prime_UTR | 35.0% | |
| ACAAAAACCACCTTCTTCAT+GGG | - | chr1_1:6607723-6607742 | Msa0004150:three_prime_UTR | 35.0% | |
| TTTATTTGGTCCCATGAAGA+AGG | + | chr1_1:6607736-6607755 | None:intergenic | 35.0% | |
| !! | AACATCTCTGAAGCTACAAA+TGG | + | chr1_1:6607860-6607879 | None:intergenic | 35.0% |
| GAAACACTAGAGTTGTTCAT+AGG | - | chr1_1:6607887-6607906 | Msa0004150:CDS | 35.0% | |
| ACATCATCATCATCTTCAAG+AGG | - | chr1_1:6608054-6608073 | Msa0004150:CDS | 35.0% | |
| AAGTAGGGACTAAACTTACA+AGG | + | chr1_1:6608986-6609005 | None:intergenic | 35.0% | |
| AAGTAGGGACTAAACTTACA+AGG | - | chr1_1:6608986-6609005 | Msa0004150:intron | 35.0% | |
| ! | CATAATGTGCTTCTAGGAAT+TGG | + | chr1_1:6609341-6609360 | None:intergenic | 35.0% |
| TTATGTCGTTGTGATAAGTG+TGG | - | chr1_1:6609356-6609375 | Msa0004150:intron | 35.0% | |
| GTTCCAAGCTTTCAATCTTA+GGG | + | chr1_1:6609391-6609410 | None:intergenic | 35.0% | |
| AGTTCCAAGCTTTCAATCTT+AGG | + | chr1_1:6609392-6609411 | None:intergenic | 35.0% | |
| !! | AACATTAGCTTTGCTAGTAG+TGG | + | chr1_1:6609618-6609637 | None:intergenic | 35.0% |
| TCTTGTTACCGTGCATTAAT+TGG | + | chr1_1:6609736-6609755 | None:intergenic | 35.0% | |
| CGGTAACAAGAATTTAGATC+TGG | - | chr1_1:6609745-6609764 | Msa0004150:intron | 35.0% | |
| ! | CTTCGAAATTTGAAACAAGG+AGG | - | chr1_1:6609939-6609958 | Msa0004150:intron | 35.0% |
| ATGACTCATAACAAATGCAC+TGG | + | chr1_1:6610382-6610401 | None:intergenic | 35.0% | |
| TATCTCATCTCGTACGTATA+AGG | + | chr1_1:6610476-6610495 | None:intergenic | 35.0% | |
| !!! | TTGCTTATATTTTGACACGG+AGG | - | chr1_1:6610764-6610783 | Msa0004150:intron | 35.0% |
| !!! | TGCTTATATTTTGACACGGA+GGG | - | chr1_1:6610765-6610784 | Msa0004150:intron | 35.0% |
| ! | TAGGAATCTAATCCCTTTTC+AGG | - | chr1_1:6610931-6610950 | Msa0004150:intron | 35.0% |
| !! | CGTGAAAAGTATCCTGAAAA+GGG | + | chr1_1:6610946-6610965 | None:intergenic | 35.0% |
| AGTATCACTCCATCATAACA+AGG | - | chr1_1:6611081-6611100 | Msa0004150:intron | 35.0% | |
| TTCTCCAACTGAATTGTCAT+GGG | + | chr1_1:6611887-6611906 | None:intergenic | 35.0% | |
| ! | AGTTGGAGAAGATTCTAGAA+GGG | - | chr1_1:6611897-6611916 | Msa0004150:CDS | 35.0% |
| !!! | GGTGTGTTTTGATTCTATTG+TGG | - | chr1_1:6612002-6612021 | Msa0004150:CDS | 35.0% |
| ATTCTATTGTGGAGAATGCT+GGG | - | chr1_1:6612013-6612032 | Msa0004150:CDS | 35.0% | |
| AAACAAGGAAGAATAGCTCT+TGG | + | chr1_1:6612075-6612094 | None:intergenic | 35.0% | |
| ACCTTGCATGTTTGATATCA+CGG | - | chr1_1:6612132-6612151 | Msa0004150:CDS | 35.0% | |
| TTGATATCACGGTGAAATTG+TGG | - | chr1_1:6612143-6612162 | Msa0004150:CDS | 35.0% | |
| TTAGATCGCGTATCAAGATT+GGG | + | chr1_1:6612298-6612317 | None:intergenic | 35.0% | |
| ATTAGATCGCGTATCAAGAT+TGG | + | chr1_1:6612299-6612318 | None:intergenic | 35.0% | |
| AGGAATTAAGGAGAGCCATT+AGG | + | chr1_1:6607618-6607637 | None:intergenic | 40.0% | |
| CTTCGATCTGTTTGCATGAT+AGG | + | chr1_1:6607765-6607784 | None:intergenic | 40.0% | |
| CTATCATGCAAACAGATCGA+AGG | - | chr1_1:6607763-6607782 | Msa0004150:three_prime_UTR | 40.0% | |
| AGCTTCAGAGATGTTGTTCA+TGG | - | chr1_1:6607865-6607884 | Msa0004150:CDS | 40.0% | |
| ATCACCAGAGAGTAGTATCT+TGG | - | chr1_1:6607921-6607940 | Msa0004150:CDS | 40.0% | |
| TCACCAGAGAGTAGTATCTT+GGG | - | chr1_1:6607922-6607941 | Msa0004150:CDS | 40.0% | |
| !! | TGTTCTGGGAAATCATCCAA+CGG | - | chr1_1:6608018-6608037 | Msa0004150:CDS | 40.0% |
| CTTCAAGAGGAATGCAGTTT+AGG | - | chr1_1:6608067-6608086 | Msa0004150:CDS | 40.0% | |
| ATGCAGTTTAGGAAGCTATC+TGG | - | chr1_1:6608078-6608097 | Msa0004150:CDS | 40.0% | |
| GTGTATGTGATTGCAAACTC+AGG | - | chr1_1:6609312-6609331 | Msa0004150:intron | 40.0% | |
| CAACGACATAATGTGCTTCT+AGG | + | chr1_1:6609347-6609366 | None:intergenic | 40.0% | |
| CTTCCCTAAGATTGAAAGCT+TGG | - | chr1_1:6609385-6609404 | Msa0004150:intron | 40.0% | |
| TTGAAACAAGGAGGGCAAAA+AGG | - | chr1_1:6609948-6609967 | Msa0004150:intron | 40.0% | |
| AAGATAATGACATGCACGGA+TGG | + | chr1_1:6609978-6609997 | None:intergenic | 40.0% | |
| !! | CATAACAAATGCACTGGCTT+TGG | + | chr1_1:6610376-6610395 | None:intergenic | 40.0% |
| GATGAGATATCACAGCTGTA+TGG | - | chr1_1:6610487-6610506 | Msa0004150:CDS | 40.0% | |
| AATCAAGAGTTGTCACGTTG+TGG | + | chr1_1:6610538-6610557 | None:intergenic | 40.0% | |
| ACGTGACAACTCTTGATTTC+TGG | - | chr1_1:6610540-6610559 | Msa0004150:CDS | 40.0% | |
| ! | CTTTCAATGGAAGAGAGTGT+TGG | + | chr1_1:6610810-6610829 | None:intergenic | 40.0% |
| !! | GCGTGAAAAGTATCCTGAAA+AGG | + | chr1_1:6610947-6610966 | None:intergenic | 40.0% |
| CTCCAATGTGCAAGATTGAA+CGG | - | chr1_1:6611584-6611603 | Msa0004150:intron | 40.0% | |
| ATCCGTTCAATCTTGCACAT+TGG | + | chr1_1:6611589-6611608 | None:intergenic | 40.0% | |
| ACACACAACGAACAATCCAA+CGG | - | chr1_1:6611623-6611642 | Msa0004150:intron | 40.0% | |
| !!! | TGGATTTTTCTTGGTGGTGT+TGG | + | chr1_1:6611686-6611705 | None:intergenic | 40.0% |
| ACACCACCAAGAAAAATCCA+CGG | - | chr1_1:6611686-6611705 | Msa0004150:intron | 40.0% | |
| !! | CTTTCTTTTGAAAACCGTGC+CGG | + | chr1_1:6611831-6611850 | None:intergenic | 40.0% |
| ! | CACGGTTTTCAAAAGAAAGG+TGG | - | chr1_1:6611832-6611851 | Msa0004150:CDS | 40.0% |
| CTTCTCCAACTGAATTGTCA+TGG | + | chr1_1:6611888-6611907 | None:intergenic | 40.0% | |
| CAGTTGGAGAAGATTCTAGA+AGG | - | chr1_1:6611896-6611915 | Msa0004150:CDS | 40.0% | |
| GATTCTATTGTGGAGAATGC+TGG | - | chr1_1:6612012-6612031 | Msa0004150:CDS | 40.0% | |
| ACCGTGATATCAAACATGCA+AGG | + | chr1_1:6612136-6612155 | None:intergenic | 40.0% | |
| TAGATCGCGTATCAAGATTG+GGG | + | chr1_1:6612297-6612316 | None:intergenic | 40.0% | |
| TTCATGGGAGAGAGAGATTG+AGG | + | chr1_1:6607551-6607570 | None:intergenic | 45.0% | |
| !!! | GTTTTGGGGGTGTTTTCTTG+GGG | + | chr1_1:6607657-6607676 | None:intergenic | 45.0% |
| !!! | GGTTTTGGGGGTGTTTTCTT+GGG | + | chr1_1:6607658-6607677 | None:intergenic | 45.0% |
| ATTTGGTCCCATGAAGAAGG+TGG | + | chr1_1:6607733-6607752 | None:intergenic | 45.0% | |
| CGATCTGTTTGCATGATAGG+AGG | + | chr1_1:6607762-6607781 | None:intergenic | 45.0% | |
| TGACCCAAGATACTACTCTC+TGG | + | chr1_1:6607928-6607947 | None:intergenic | 45.0% | |
| ! | GATGATGATGAAGCAGTGAC+AGG | + | chr1_1:6607976-6607995 | None:intergenic | 45.0% |
| TCGTTGTGATAAGTGTGGAG+AGG | - | chr1_1:6609361-6609380 | Msa0004150:intron | 45.0% | |
| ATAATGACATGCACGGATGG+TGG | + | chr1_1:6609975-6609994 | None:intergenic | 45.0% | |
| !! | ACAAATGCACTGGCTTTGGT+GGG | + | chr1_1:6610372-6610391 | None:intergenic | 45.0% |
| !! | AACAAATGCACTGGCTTTGG+TGG | + | chr1_1:6610373-6610392 | None:intergenic | 45.0% |
| !!! | TTTTGAAACGGAGGGAGTAC+TGG | + | chr1_1:6610642-6610661 | None:intergenic | 45.0% |
| AACCAAGGTAGCCAAGTTGT+AGG | - | chr1_1:6610905-6610924 | Msa0004150:intron | 45.0% | |
| ACCAAGGTAGCCAAGTTGTA+GGG | - | chr1_1:6610906-6610925 | Msa0004150:intron | 45.0% | |
| GATTCCTAGTCCCTACAACT+TGG | + | chr1_1:6610919-6610938 | None:intergenic | 45.0% | |
| TTGTTGAACAGTTTCGGAGC+TGG | - | chr1_1:6611495-6611514 | Msa0004150:intron | 45.0% | |
| TGTTGAACAGTTTCGGAGCT+GGG | - | chr1_1:6611496-6611515 | Msa0004150:intron | 45.0% | |
| ! | ATGTTTCTGCCTGAATCCTC+TGG | + | chr1_1:6611523-6611542 | None:intergenic | 45.0% |
| GGATTGTTCGTTGTGTGTTG+TGG | + | chr1_1:6611621-6611640 | None:intergenic | 45.0% | |
| ! | ACACCGTGGATTTTTCTTGG+TGG | + | chr1_1:6611692-6611711 | None:intergenic | 45.0% |
| ATAGCGATGTGCTGTGGAAA+CGG | + | chr1_1:6611738-6611757 | None:intergenic | 45.0% | |
| GCGGAGTTTGCAACATAATC+CGG | - | chr1_1:6611809-6611828 | Msa0004150:CDS | 45.0% | |
| GTTTGCAACATAATCCGGCA+CGG | - | chr1_1:6611814-6611833 | Msa0004150:CDS | 45.0% | |
| ! | CGGCACGGTTTTCAAAAGAA+AGG | - | chr1_1:6611829-6611848 | Msa0004150:CDS | 45.0% |
| GTGAAGACCAATGCTAGTAG+TGG | - | chr1_1:6611856-6611875 | Msa0004150:CDS | 45.0% | |
| AGACCAATGCTAGTAGTGGT+AGG | - | chr1_1:6611860-6611879 | Msa0004150:CDS | 45.0% | |
| GACCAATGCTAGTAGTGGTA+GGG | - | chr1_1:6611861-6611880 | Msa0004150:CDS | 45.0% | |
| ! | AGATTCTAGAAGGGCAATGC+TGG | - | chr1_1:6611906-6611925 | Msa0004150:CDS | 45.0% |
| ! | TGCAAGGTATTCGGTCAACA+TGG | + | chr1_1:6612120-6612139 | None:intergenic | 45.0% |
| GGTGAAATTGTGGATCACTC+AGG | - | chr1_1:6612153-6612172 | Msa0004150:CDS | 45.0% | |
| !!! | TATTTTTTTAACAATATTAT+TGG | - | chr1_1:6608367-6608386 | Msa0004150:CDS | 5.0% |
| !!! | AAGTAAATTTTTTTTTTTAT+AGG | - | chr1_1:6608941-6608960 | Msa0004150:intron | 5.0% |
| !!! | AGTAAATTTTTTTTTTTATA+GGG | - | chr1_1:6608942-6608961 | Msa0004150:intron | 5.0% |
| TTCTTGGGGTGGGATTGTTC+AGG | + | chr1_1:6607643-6607662 | None:intergenic | 50.0% | |
| !!! | GGGTTTTGGGGGTGTTTTCT+TGG | + | chr1_1:6607659-6607678 | None:intergenic | 50.0% |
| ACTCGCTCTGCATCATGTTC+TGG | - | chr1_1:6608003-6608022 | Msa0004150:CDS | 50.0% | |
| CTCGCTCTGCATCATGTTCT+GGG | - | chr1_1:6608004-6608023 | Msa0004150:CDS | 50.0% | |
| TCTGGGAAATCATCCAACGG+TGG | - | chr1_1:6608021-6608040 | Msa0004150:CDS | 50.0% | |
| TGTGTAGTTTCCTCCACCGT+TGG | + | chr1_1:6608037-6608056 | None:intergenic | 50.0% | |
| ACATGATCGTTGACCCTAGC+AGG | - | chr1_1:6608115-6608134 | Msa0004150:CDS | 50.0% | |
| CATCAAGCTGTTCGACATGC+AGG | - | chr1_1:6609413-6609432 | Msa0004150:intron | 50.0% | |
| CAAGAGTTGTCACGTTGTGG+AGG | + | chr1_1:6610535-6610554 | None:intergenic | 50.0% | |
| TCCCTACAACTTGGCTACCT+TGG | + | chr1_1:6610910-6610929 | None:intergenic | 50.0% | |
| GTAGCCAAGTTGTAGGGACT+AGG | - | chr1_1:6610912-6610931 | Msa0004150:intron | 50.0% | |
| ACGAACAATCCAACGGTTCG+AGG | - | chr1_1:6611630-6611649 | Msa0004150:intron | 50.0% | |
| !! | TCTTGGTGGTGTTGGATGCA+CGG | + | chr1_1:6611678-6611697 | None:intergenic | 50.0% |
| ! | GGCACACCGTGGATTTTTCT+TGG | + | chr1_1:6611695-6611714 | None:intergenic | 50.0% |
| ACATCGCTATCGTGTGCACT+CGG | - | chr1_1:6611748-6611767 | Msa0004150:intron | 50.0% | |
| ATGTTGCAAACTCCGCATCC+AGG | + | chr1_1:6611805-6611824 | None:intergenic | 50.0% | |
| AGGGCCCATGACAATTCAGT+TGG | - | chr1_1:6611880-6611899 | Msa0004150:CDS | 50.0% | |
| ATTTCCTCCTCTGACACCAC+CGG | + | chr1_1:6611982-6612001 | None:intergenic | 50.0% | |
| !!! | TGGGGGTGTTTTCTTGGGGT+GGG | + | chr1_1:6607653-6607672 | None:intergenic | 55.0% |
| !!! | TTGGGGGTGTTTTCTTGGGG+TGG | + | chr1_1:6607654-6607673 | None:intergenic | 55.0% |
| GGGAAATCATCCAACGGTGG+AGG | - | chr1_1:6608024-6608043 | Msa0004150:CDS | 55.0% | |
| AGTTGTCACGTTGTGGAGGC+AGG | + | chr1_1:6610531-6610550 | None:intergenic | 55.0% | |
| CTCTGCATTCCTCGAACCGT+TGG | + | chr1_1:6611642-6611661 | None:intergenic | 55.0% | |
| GTTCGAGGAATGCAGAGACG+CGG | - | chr1_1:6611645-6611664 | Msa0004150:intron | 55.0% | |
| !! | CTTGGTGGTGTTGGATGCAC+GGG | + | chr1_1:6611677-6611696 | None:intergenic | 55.0% |
| GAAAAATCCACGGTGTGCCG+CGG | - | chr1_1:6611696-6611715 | Msa0004150:intron | 55.0% | |
| CACACGATAGCGATGTGCTG+TGG | + | chr1_1:6611744-6611763 | None:intergenic | 55.0% | |
| GGCCCTACCACTACTAGCAT+TGG | + | chr1_1:6611866-6611885 | None:intergenic | 55.0% | |
| TCACTTTCCCGGCAATCACG+CGG | + | chr1_1:6611936-6611955 | None:intergenic | 55.0% | |
| ! | GGTGGTGTCAGAGGAGGAAA+TGG | - | chr1_1:6611981-6612000 | Msa0004150:CDS | 55.0% |
| GGGGTGGGATTGTTCAGGCA+AGG | + | chr1_1:6607638-6607657 | None:intergenic | 60.0% | |
| AGTTTCGGAGCTGGGTCCAG+AGG | - | chr1_1:6611504-6611523 | Msa0004150:intron | 60.0% | |
| GAGCTGGGTCCAGAGGATTC+AGG | - | chr1_1:6611511-6611530 | Msa0004150:intron | 60.0% | |
| GCGATGTGCTGTGGAAACGG+AGG | + | chr1_1:6611735-6611754 | None:intergenic | 60.0% | |
| !! | TCGTGTGCACTCGGTGCAAG+TGG | - | chr1_1:6611757-6611776 | Msa0004150:intron | 60.0% |
| GCAAACTCCGCATCCAGGCA+CGG | + | chr1_1:6611800-6611819 | None:intergenic | 60.0% | |
| AATCCACGGTGTGCCGCGGA+CGG | - | chr1_1:6611700-6611719 | Msa0004150:intron | 65.0% | |
| GAGGAGTTCGTTGCCGTCCG+CGG | + | chr1_1:6611716-6611735 | None:intergenic | 65.0% | |
| GCATCCAGGCACGGCGCAAA+GGG | + | chr1_1:6611791-6611810 | None:intergenic | 65.0% | |
| CTTTGCGCCGTGCCTGGATG+CGG | - | chr1_1:6611790-6611809 | Msa0004150:CDS | 65.0% | |
| CTGGTGTGCCGCGTGATTGC+CGG | - | chr1_1:6611925-6611944 | Msa0004150:CDS | 65.0% | |
| TGGTGTGCCGCGTGATTGCC+GGG | - | chr1_1:6611926-6611945 | Msa0004150:CDS | 65.0% | |
| TGCCGGGAAAGTGAAGCGCG+TGG | - | chr1_1:6611942-6611961 | Msa0004150:CDS | 65.0% | |
| CGCCACGCGCTTCACTTTCC+CGG | + | chr1_1:6611947-6611966 | None:intergenic | 65.0% | |
| CGGGAAAGTGAAGCGCGTGG+CGG | - | chr1_1:6611945-6611964 | Msa0004150:CDS | 65.0% | |
| GAAAGTGAAGCGCGTGGCGG+AGG | - | chr1_1:6611948-6611967 | Msa0004150:CDS | 65.0% | |
| ! | AGGTGCACCGGTGGTGTCAG+AGG | - | chr1_1:6611972-6611991 | Msa0004150:CDS | 65.0% |
| ! | TGCACCGGTGGTGTCAGAGG+AGG | - | chr1_1:6611975-6611994 | Msa0004150:CDS | 65.0% |
| TCCAGGCACGGCGCAAAGGG+CGG | + | chr1_1:6611788-6611807 | None:intergenic | 70.0% | |
| CGCATCCAGGCACGGCGCAA+AGG | + | chr1_1:6611792-6611811 | None:intergenic | 70.0% | |
| ! | GTGAAGCGCGTGGCGGAGGA+AGG | - | chr1_1:6611952-6611971 | Msa0004150:CDS | 70.0% |
| ! | CGTGGCGGAGGAAGGTGCAC+CGG | - | chr1_1:6611960-6611979 | Msa0004150:CDS | 70.0% |
| TTGCCGTCCGCGGCACACCG+TGG | + | chr1_1:6611706-6611725 | None:intergenic | 75.0% | |
| AGGCACGGCGCAAAGGGCGG+AGG | + | chr1_1:6611785-6611804 | None:intergenic | 75.0% | |
| TCCGCCCTTTGCGCCGTGCC+TGG | - | chr1_1:6611784-6611803 | Msa0004150:CDS | 75.0% | |
| ! | GGCGGAGGAAGGTGCACCGG+TGG | - | chr1_1:6611963-6611982 | Msa0004150:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 6607497 | 6612416 | 6607497 | ID=Msa0004150;Name=Msa0004150 |
| chr1_1 | mRNA | 6607497 | 6612416 | 6607497 | ID=Msa0004150-mRNA-1;Parent=Msa0004150;Name=Msa0004150-mRNA-1;_AED=0.00;_eAED=0.00;_QI=122|1|1|1|1|1|3|291|412 |
| chr1_1 | exon | 6607497 | 6608407 | 6607497 | ID=Msa0004150-mRNA-1:exon:2286;Parent=Msa0004150-mRNA-1 |
| chr1_1 | exon | 6610479 | 6610579 | 6610479 | ID=Msa0004150-mRNA-1:exon:2285;Parent=Msa0004150-mRNA-1 |
| chr1_1 | exon | 6611777 | 6612416 | 6611777 | ID=Msa0004150-mRNA-1:exon:2284;Parent=Msa0004150-mRNA-1 |
| chr1_1 | five_prime_UTR | 6612295 | 6612416 | 6612295 | ID=Msa0004150-mRNA-1:five_prime_utr;Parent=Msa0004150-mRNA-1 |
| chr1_1 | CDS | 6611777 | 6612294 | 6611777 | ID=Msa0004150-mRNA-1:cds;Parent=Msa0004150-mRNA-1 |
| chr1_1 | CDS | 6610479 | 6610579 | 6610479 | ID=Msa0004150-mRNA-1:cds;Parent=Msa0004150-mRNA-1 |
| chr1_1 | CDS | 6607788 | 6608407 | 6607788 | ID=Msa0004150-mRNA-1:cds;Parent=Msa0004150-mRNA-1 |
| chr1_1 | three_prime_UTR | 6607497 | 6607787 | 6607497 | ID=Msa0004150-mRNA-1:three_prime_utr;Parent=Msa0004150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
