Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0004700 | TF | NAC |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 29 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACACTGCAGGACCGGATTC+TGG | 0.279523 | 1_1:+7168125 | Msa0004700:CDS |
| GACCGGATTCTGGAGGAAAA+AGG | 0.317490 | 1_1:+7168135 | Msa0004700:CDS |
| ATGGATCTGGATGCTGAGTT+TGG | 0.391512 | 1_1:+7168447 | Msa0004700:CDS |
| GTTAGTTCTGATAGCAGTGT+TGG | 0.458231 | 1_1:-7168239 | None:intergenic |
| TTAGTTCTGATAGCAGTGTT+GGG | 0.461166 | 1_1:-7168238 | None:intergenic |
| CTGCCCACCAAAGATGGATC+TGG | 0.482322 | 1_1:+7168434 | Msa0004700:intron |
| ACACTGCTATCAGAACTAAC+TGG | 0.486063 | 1_1:+7168242 | Msa0004700:CDS |
| TGGAGTTACTCAGAAACCTA+TGG | 0.490884 | 1_1:+7168530 | Msa0004700:CDS |
| TGGTGCTGGTAATGTTGTGT+TGG | 0.499495 | 1_1:+7168177 | Msa0004700:CDS |
| GAGAGAAGACACTGCAGGAC+CGG | 0.504565 | 1_1:+7168118 | Msa0004700:CDS |
| GATAATGTATGAGCATGCTT+TGG | 0.511387 | 1_1:+7168264 | Msa0004700:CDS |
| GGTGCTGGTAATGTTGTGTT+GGG | 0.514976 | 1_1:+7168178 | Msa0004700:CDS |
| GACTCTGCTGACAAGATGAA+TGG | 0.517567 | 1_1:+7168510 | Msa0004700:CDS |
| TGCTTTGGCTGACAAGCCTC+AGG | 0.528648 | 1_1:+7168279 | Msa0004700:CDS |
| ACCATCACCTTCATCAACCT+TGG | 0.550147 | 1_1:-7168478 | None:intergenic |
| GTTCAAGACATCACTGGTGC+TGG | 0.556036 | 1_1:+7168163 | Msa0004700:CDS |
| GCGTTATCCAAGGTTGATGA+AGG | 0.556534 | 1_1:+7168471 | Msa0004700:CDS |
| GGAGTTACTCAGAAACCTAT+GGG | 0.559803 | 1_1:+7168531 | Msa0004700:CDS |
| ACTAGTGTTGCTGCTGAGCA+AGG | 0.563406 | 1_1:+7168573 | Msa0004700:CDS |
| TAGTTCTGATAGCAGTGTTG+GGG | 0.568976 | 1_1:-7168237 | None:intergenic |
| GGAGCTGTTCAAGACATCAC+TGG | 0.599122 | 1_1:+7168157 | Msa0004700:CDS |
| TGAGTTTGGAGCGTTATCCA+AGG | 0.615415 | 1_1:+7168461 | Msa0004700:CDS |
| AGTTCTGATAGCAGTGTTGG+GGG | 0.663335 | 1_1:-7168236 | None:intergenic |
| TCCAAGGTTGATGAAGGTGA+TGG | 0.681651 | 1_1:+7168477 | Msa0004700:CDS |
| ACTGCAGGACCGGATTCTGG+AGG | 0.686245 | 1_1:+7168128 | Msa0004700:CDS |
| GAGTTACTCAGAAACCTATG+GGG | 0.687052 | 1_1:+7168532 | Msa0004700:CDS |
| AGTGTTGCTGCTGAGCAAGG+CGG | 0.699580 | 1_1:+7168576 | Msa0004700:CDS |
| ACATTGAGAGAAGACACTGC+AGG | 0.700620 | 1_1:+7168113 | Msa0004700:CDS |
| AGTTACTCAGAAACCTATGG+GGG | 0.734801 | 1_1:+7168533 | Msa0004700:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAAATTTTAAAATATTAA+TGG | + | chr1_1:7168772-7168791 | Msa0004700:intron | 0.0% |
| !!! | TTTAAATTTTAAAATATTAA+TGG | + | chr1_1:7168772-7168791 | Msa0004700:intron | 0.0% |
| !! | AATAATAGTAATTGTAAAAT+AGG | + | chr1_1:7168932-7168951 | Msa0004700:intron | 10.0% |
| !! | AATAATAGTAATTGTAAAAT+AGG | + | chr1_1:7168932-7168951 | Msa0004700:intron | 10.0% |
| !! | AATTAATCATCAATGATTTA+AGG | - | chr1_1:7168341-7168360 | None:intergenic | 15.0% |
| !!! | TTTTCTTTCAATTATTTTGT+AGG | + | chr1_1:7168384-7168403 | Msa0004700:intron | 15.0% |
| !! | TAATGGAAATTATTGATATA+TGG | + | chr1_1:7168789-7168808 | Msa0004700:intron | 15.0% |
| !! | AATTAATCATCAATGATTTA+AGG | - | chr1_1:7168341-7168360 | None:intergenic | 15.0% |
| !!! | TTTTCTTTCAATTATTTTGT+AGG | + | chr1_1:7168384-7168403 | Msa0004700:intron | 15.0% |
| !! | TAATGGAAATTATTGATATA+TGG | + | chr1_1:7168789-7168808 | Msa0004700:intron | 15.0% |
| !! | TTAATAAAGAGAGATCAAAA+TGG | - | chr1_1:7168651-7168670 | None:intergenic | 20.0% |
| !! | ATTTATTACTAGAGAAAAGA+CGG | - | chr1_1:7168915-7168934 | None:intergenic | 20.0% |
| !! | TTAATAAAGAGAGATCAAAA+TGG | - | chr1_1:7168651-7168670 | None:intergenic | 20.0% |
| !! | ATTTATTACTAGAGAAAAGA+CGG | - | chr1_1:7168915-7168934 | None:intergenic | 20.0% |
| ! | TGCGTGATAAAAAATAAACA+GGG | - | chr1_1:7168212-7168231 | None:intergenic | 25.0% |
| ! | TTGCGTGATAAAAAATAAAC+AGG | - | chr1_1:7168213-7168232 | None:intergenic | 25.0% |
| ! | TCAATGATTTAAGGAATCAA+GGG | - | chr1_1:7168332-7168351 | None:intergenic | 25.0% |
| ! | ATCAATGATTTAAGGAATCA+AGG | - | chr1_1:7168333-7168352 | None:intergenic | 25.0% |
| ! | AAAAAACGACAAATGACAAA+AGG | - | chr1_1:7168412-7168431 | None:intergenic | 25.0% |
| !! | TCAAATTTCACAGATTTTGA+AGG | + | chr1_1:7168603-7168622 | Msa0004700:CDS | 25.0% |
| ! | TTTATTACTAGAGAAAAGAC+GGG | - | chr1_1:7168914-7168933 | None:intergenic | 25.0% |
| !! | TTTTCAAATACACACTTTCA+AGG | - | chr1_1:7169046-7169065 | None:intergenic | 25.0% |
| ! | ACTGCGGAAATAAAAAAAAA+AGG | - | chr1_1:7169145-7169164 | None:intergenic | 25.0% |
| ! | TGCGTGATAAAAAATAAACA+GGG | - | chr1_1:7168212-7168231 | None:intergenic | 25.0% |
| ! | TTGCGTGATAAAAAATAAAC+AGG | - | chr1_1:7168213-7168232 | None:intergenic | 25.0% |
| ! | TCAATGATTTAAGGAATCAA+GGG | - | chr1_1:7168332-7168351 | None:intergenic | 25.0% |
| ! | ATCAATGATTTAAGGAATCA+AGG | - | chr1_1:7168333-7168352 | None:intergenic | 25.0% |
| ! | AAAAAACGACAAATGACAAA+AGG | - | chr1_1:7168412-7168431 | None:intergenic | 25.0% |
| !! | TCAAATTTCACAGATTTTGA+AGG | + | chr1_1:7168603-7168622 | Msa0004700:CDS | 25.0% |
| ! | TTTATTACTAGAGAAAAGAC+GGG | - | chr1_1:7168914-7168933 | None:intergenic | 25.0% |
| !! | TTTTCAAATACACACTTTCA+AGG | - | chr1_1:7169046-7169065 | None:intergenic | 25.0% |
| ! | ACTGCGGAAATAAAAAAAAA+AGG | - | chr1_1:7169145-7169164 | None:intergenic | 25.0% |
| ! | GAAAGAGATAATTTTGCGTT+TGG | - | chr1_1:7168090-7168109 | None:intergenic | 30.0% |
| ! | TGGAATATATTTTACCTGCA+GGG | - | chr1_1:7168631-7168650 | None:intergenic | 30.0% |
| ! | ATGGAATATATTTTACCTGC+AGG | - | chr1_1:7168632-7168651 | None:intergenic | 30.0% |
| GTACGATCAACAACATTAAT+TGG | - | chr1_1:7168674-7168693 | None:intergenic | 30.0% | |
| ATTAGAAAGAGAGAACAAAC+GGG | - | chr1_1:7168696-7168715 | None:intergenic | 30.0% | |
| CATTAGAAAGAGAGAACAAA+CGG | - | chr1_1:7168697-7168716 | None:intergenic | 30.0% | |
| ! | TTTTATCACTAACCAAGTGT+TGG | + | chr1_1:7168976-7168995 | Msa0004700:intron | 30.0% |
| TTTATCACTAACCAAGTGTT+GGG | + | chr1_1:7168977-7168996 | Msa0004700:intron | 30.0% | |
| ! | TTGATTTTGCTTCTTTGTCA+TGG | + | chr1_1:7169017-7169036 | Msa0004700:intron | 30.0% |
| ! | TGATTTTGCTTCTTTGTCAT+GGG | + | chr1_1:7169018-7169037 | Msa0004700:intron | 30.0% |
| CATAGCTGTGAAAATTTGAT+TGG | + | chr1_1:7169069-7169088 | Msa0004700:intron | 30.0% | |
| GACGAGAAAATTATAAACTG+CGG | - | chr1_1:7169161-7169180 | None:intergenic | 30.0% | |
| ! | GAAAGAGATAATTTTGCGTT+TGG | - | chr1_1:7168090-7168109 | None:intergenic | 30.0% |
| ! | TGGAATATATTTTACCTGCA+GGG | - | chr1_1:7168631-7168650 | None:intergenic | 30.0% |
| ! | ATGGAATATATTTTACCTGC+AGG | - | chr1_1:7168632-7168651 | None:intergenic | 30.0% |
| GTACGATCAACAACATTAAT+TGG | - | chr1_1:7168674-7168693 | None:intergenic | 30.0% | |
| ATTAGAAAGAGAGAACAAAC+GGG | - | chr1_1:7168696-7168715 | None:intergenic | 30.0% | |
| CATTAGAAAGAGAGAACAAA+CGG | - | chr1_1:7168697-7168716 | None:intergenic | 30.0% | |
| ! | TTTTATCACTAACCAAGTGT+TGG | + | chr1_1:7168976-7168995 | Msa0004700:intron | 30.0% |
| TTTATCACTAACCAAGTGTT+GGG | + | chr1_1:7168977-7168996 | Msa0004700:intron | 30.0% | |
| ! | TTGATTTTGCTTCTTTGTCA+TGG | + | chr1_1:7169017-7169036 | Msa0004700:intron | 30.0% |
| ! | TGATTTTGCTTCTTTGTCAT+GGG | + | chr1_1:7169018-7169037 | Msa0004700:intron | 30.0% |
| CATAGCTGTGAAAATTTGAT+TGG | + | chr1_1:7169069-7169088 | Msa0004700:intron | 30.0% | |
| GACGAGAAAATTATAAACTG+CGG | - | chr1_1:7169161-7169180 | None:intergenic | 30.0% | |
| !! | TTAGTTCTGATAGCAGTGTT+GGG | - | chr1_1:7168241-7168260 | None:intergenic | 35.0% |
| GATAATGTATGAGCATGCTT+TGG | + | chr1_1:7168264-7168283 | Msa0004700:CDS | 35.0% | |
| GATTTAAGGAATCAAGGGAA+TGG | - | chr1_1:7168327-7168346 | None:intergenic | 35.0% | |
| CGTTAGTGCAATAAAAAGAG+CGG | + | chr1_1:7168869-7168888 | Msa0004700:intron | 35.0% | |
| CAATAAAAAGAGCGGAAAGA+CGG | + | chr1_1:7168877-7168896 | Msa0004700:intron | 35.0% | |
| AATAAAAAGAGCGGAAAGAC+GGG | + | chr1_1:7168878-7168897 | Msa0004700:intron | 35.0% | |
| TACATTAATGACCCAACACT+TGG | - | chr1_1:7168991-7169010 | None:intergenic | 35.0% | |
| ! | AGTGTTGGGTCATTAATGTA+TGG | + | chr1_1:7168991-7169010 | Msa0004700:intron | 35.0% |
| ! | AAAATTTGATTGGCCACGTT+TGG | + | chr1_1:7169079-7169098 | Msa0004700:intron | 35.0% |
| !! | TTAGTTCTGATAGCAGTGTT+GGG | - | chr1_1:7168241-7168260 | None:intergenic | 35.0% |
| GATAATGTATGAGCATGCTT+TGG | + | chr1_1:7168264-7168283 | Msa0004700:CDS | 35.0% | |
| GATTTAAGGAATCAAGGGAA+TGG | - | chr1_1:7168327-7168346 | None:intergenic | 35.0% | |
| CGTTAGTGCAATAAAAAGAG+CGG | + | chr1_1:7168869-7168888 | Msa0004700:intron | 35.0% | |
| CAATAAAAAGAGCGGAAAGA+CGG | + | chr1_1:7168877-7168896 | Msa0004700:intron | 35.0% | |
| AATAAAAAGAGCGGAAAGAC+GGG | + | chr1_1:7168878-7168897 | Msa0004700:intron | 35.0% | |
| TACATTAATGACCCAACACT+TGG | - | chr1_1:7168991-7169010 | None:intergenic | 35.0% | |
| ! | AGTGTTGGGTCATTAATGTA+TGG | + | chr1_1:7168991-7169010 | Msa0004700:intron | 35.0% |
| ! | AAAATTTGATTGGCCACGTT+TGG | + | chr1_1:7169079-7169098 | Msa0004700:intron | 35.0% |
| !! | TAGTTCTGATAGCAGTGTTG+GGG | - | chr1_1:7168240-7168259 | None:intergenic | 40.0% |
| !! | GTTAGTTCTGATAGCAGTGT+TGG | - | chr1_1:7168242-7168261 | None:intergenic | 40.0% |
| ACACTGCTATCAGAACTAAC+TGG | + | chr1_1:7168242-7168261 | Msa0004700:CDS | 40.0% | |
| TTCAAAAAGTCCCATACCTG+AGG | - | chr1_1:7168298-7168317 | None:intergenic | 40.0% | |
| TAAGGAATCAAGGGAATGGT+GGG | - | chr1_1:7168323-7168342 | None:intergenic | 40.0% | |
| TTAAGGAATCAAGGGAATGG+TGG | - | chr1_1:7168324-7168343 | None:intergenic | 40.0% | |
| TGGAGTTACTCAGAAACCTA+TGG | + | chr1_1:7168530-7168549 | Msa0004700:CDS | 40.0% | |
| GGAGTTACTCAGAAACCTAT+GGG | + | chr1_1:7168531-7168550 | Msa0004700:CDS | 40.0% | |
| GAGTTACTCAGAAACCTATG+GGG | + | chr1_1:7168532-7168551 | Msa0004700:CDS | 40.0% | |
| AGTTACTCAGAAACCTATGG+GGG | + | chr1_1:7168533-7168552 | Msa0004700:CDS | 40.0% | |
| TGATATCATTGAGCCAAACG+TGG | - | chr1_1:7169095-7169114 | None:intergenic | 40.0% | |
| !! | TAGTTCTGATAGCAGTGTTG+GGG | - | chr1_1:7168240-7168259 | None:intergenic | 40.0% |
| !! | GTTAGTTCTGATAGCAGTGT+TGG | - | chr1_1:7168242-7168261 | None:intergenic | 40.0% |
| ACACTGCTATCAGAACTAAC+TGG | + | chr1_1:7168242-7168261 | Msa0004700:CDS | 40.0% | |
| TTCAAAAAGTCCCATACCTG+AGG | - | chr1_1:7168298-7168317 | None:intergenic | 40.0% | |
| TAAGGAATCAAGGGAATGGT+GGG | - | chr1_1:7168323-7168342 | None:intergenic | 40.0% | |
| TTAAGGAATCAAGGGAATGG+TGG | - | chr1_1:7168324-7168343 | None:intergenic | 40.0% | |
| TGGAGTTACTCAGAAACCTA+TGG | + | chr1_1:7168530-7168549 | Msa0004700:CDS | 40.0% | |
| GGAGTTACTCAGAAACCTAT+GGG | + | chr1_1:7168531-7168550 | Msa0004700:CDS | 40.0% | |
| GAGTTACTCAGAAACCTATG+GGG | + | chr1_1:7168532-7168551 | Msa0004700:CDS | 40.0% | |
| AGTTACTCAGAAACCTATGG+GGG | + | chr1_1:7168533-7168552 | Msa0004700:CDS | 40.0% | |
| TGATATCATTGAGCCAAACG+TGG | - | chr1_1:7169095-7169114 | None:intergenic | 40.0% | |
| ACATTGAGAGAAGACACTGC+AGG | + | chr1_1:7168113-7168132 | Msa0004700:CDS | 45.0% | |
| ! | ACCGGATTCTGGAGGAAAAA+GGG | + | chr1_1:7168136-7168155 | Msa0004700:CDS | 45.0% |
| ! | TCCCTTTTTCCTCCAGAATC+CGG | - | chr1_1:7168140-7168159 | None:intergenic | 45.0% |
| !! | TGGTGCTGGTAATGTTGTGT+TGG | + | chr1_1:7168177-7168196 | Msa0004700:CDS | 45.0% |
| !! | GGTGCTGGTAATGTTGTGTT+GGG | + | chr1_1:7168178-7168197 | Msa0004700:CDS | 45.0% |
| ! | AGTTCTGATAGCAGTGTTGG+GGG | - | chr1_1:7168239-7168258 | None:intergenic | 45.0% |
| !! | TTTTGACTGCCCACCAAAGA+TGG | + | chr1_1:7168428-7168447 | Msa0004700:intron | 45.0% |
| CATCCAGATCCATCTTTGGT+GGG | - | chr1_1:7168440-7168459 | None:intergenic | 45.0% | |
| TCAGCATCCAGATCCATCTT+TGG | - | chr1_1:7168444-7168463 | None:intergenic | 45.0% | |
| ATGGATCTGGATGCTGAGTT+TGG | + | chr1_1:7168447-7168466 | Msa0004700:CDS | 45.0% | |
| ! | TGAGTTTGGAGCGTTATCCA+AGG | + | chr1_1:7168461-7168480 | Msa0004700:CDS | 45.0% |
| !! | GCGTTATCCAAGGTTGATGA+AGG | + | chr1_1:7168471-7168490 | Msa0004700:CDS | 45.0% |
| !! | TCCAAGGTTGATGAAGGTGA+TGG | + | chr1_1:7168477-7168496 | Msa0004700:CDS | 45.0% |
| ACCATCACCTTCATCAACCT+TGG | - | chr1_1:7168481-7168500 | None:intergenic | 45.0% | |
| GACTCTGCTGACAAGATGAA+TGG | + | chr1_1:7168510-7168529 | Msa0004700:CDS | 45.0% | |
| ACATTGAGAGAAGACACTGC+AGG | + | chr1_1:7168113-7168132 | Msa0004700:CDS | 45.0% | |
| ! | ACCGGATTCTGGAGGAAAAA+GGG | + | chr1_1:7168136-7168155 | Msa0004700:CDS | 45.0% |
| ! | TCCCTTTTTCCTCCAGAATC+CGG | - | chr1_1:7168140-7168159 | None:intergenic | 45.0% |
| !! | TGGTGCTGGTAATGTTGTGT+TGG | + | chr1_1:7168177-7168196 | Msa0004700:CDS | 45.0% |
| !! | GGTGCTGGTAATGTTGTGTT+GGG | + | chr1_1:7168178-7168197 | Msa0004700:CDS | 45.0% |
| ! | AGTTCTGATAGCAGTGTTGG+GGG | - | chr1_1:7168239-7168258 | None:intergenic | 45.0% |
| !! | TTTTGACTGCCCACCAAAGA+TGG | + | chr1_1:7168428-7168447 | Msa0004700:intron | 45.0% |
| CATCCAGATCCATCTTTGGT+GGG | - | chr1_1:7168440-7168459 | None:intergenic | 45.0% | |
| TCAGCATCCAGATCCATCTT+TGG | - | chr1_1:7168444-7168463 | None:intergenic | 45.0% | |
| ATGGATCTGGATGCTGAGTT+TGG | + | chr1_1:7168447-7168466 | Msa0004700:CDS | 45.0% | |
| ! | TGAGTTTGGAGCGTTATCCA+AGG | + | chr1_1:7168461-7168480 | Msa0004700:CDS | 45.0% |
| !! | GCGTTATCCAAGGTTGATGA+AGG | + | chr1_1:7168471-7168490 | Msa0004700:CDS | 45.0% |
| !! | TCCAAGGTTGATGAAGGTGA+TGG | + | chr1_1:7168477-7168496 | Msa0004700:CDS | 45.0% |
| ACCATCACCTTCATCAACCT+TGG | - | chr1_1:7168481-7168500 | None:intergenic | 45.0% | |
| GACTCTGCTGACAAGATGAA+TGG | + | chr1_1:7168510-7168529 | Msa0004700:CDS | 45.0% | |
| ! | GACCGGATTCTGGAGGAAAA+AGG | + | chr1_1:7168135-7168154 | Msa0004700:CDS | 50.0% |
| GGAGCTGTTCAAGACATCAC+TGG | + | chr1_1:7168157-7168176 | Msa0004700:CDS | 50.0% | |
| GTTCAAGACATCACTGGTGC+TGG | + | chr1_1:7168163-7168182 | Msa0004700:CDS | 50.0% | |
| GCATCCAGATCCATCTTTGG+TGG | - | chr1_1:7168441-7168460 | None:intergenic | 50.0% | |
| ! | ACTAGTGTTGCTGCTGAGCA+AGG | + | chr1_1:7168573-7168592 | Msa0004700:CDS | 50.0% |
| !!! | AGATTTTGAAGGCACCCTGC+AGG | + | chr1_1:7168614-7168633 | Msa0004700:CDS | 50.0% |
| ! | GACCGGATTCTGGAGGAAAA+AGG | + | chr1_1:7168135-7168154 | Msa0004700:CDS | 50.0% |
| GGAGCTGTTCAAGACATCAC+TGG | + | chr1_1:7168157-7168176 | Msa0004700:CDS | 50.0% | |
| GTTCAAGACATCACTGGTGC+TGG | + | chr1_1:7168163-7168182 | Msa0004700:CDS | 50.0% | |
| GCATCCAGATCCATCTTTGG+TGG | - | chr1_1:7168441-7168460 | None:intergenic | 50.0% | |
| ! | ACTAGTGTTGCTGCTGAGCA+AGG | + | chr1_1:7168573-7168592 | Msa0004700:CDS | 50.0% |
| !!! | AGATTTTGAAGGCACCCTGC+AGG | + | chr1_1:7168614-7168633 | Msa0004700:CDS | 50.0% |
| GAGAGAAGACACTGCAGGAC+CGG | + | chr1_1:7168118-7168137 | Msa0004700:CDS | 55.0% | |
| TGCTTTGGCTGACAAGCCTC+AGG | + | chr1_1:7168279-7168298 | Msa0004700:CDS | 55.0% | |
| TGGCTGACAAGCCTCAGGTA+TGG | + | chr1_1:7168284-7168303 | Msa0004700:intron | 55.0% | |
| GGCTGACAAGCCTCAGGTAT+GGG | + | chr1_1:7168285-7168304 | Msa0004700:intron | 55.0% | |
| CTGCCCACCAAAGATGGATC+TGG | + | chr1_1:7168434-7168453 | Msa0004700:intron | 55.0% | |
| ACTCAGAAACCTATGGGGGC+TGG | + | chr1_1:7168537-7168556 | Msa0004700:CDS | 55.0% | |
| CTCAGAAACCTATGGGGGCT+GGG | + | chr1_1:7168538-7168557 | Msa0004700:CDS | 55.0% | |
| TCAGAAACCTATGGGGGCTG+GGG | + | chr1_1:7168539-7168558 | Msa0004700:CDS | 55.0% | |
| ! | AGTGTTGCTGCTGAGCAAGG+CGG | + | chr1_1:7168576-7168595 | Msa0004700:CDS | 55.0% |
| GAGAGAAGACACTGCAGGAC+CGG | + | chr1_1:7168118-7168137 | Msa0004700:CDS | 55.0% | |
| TGCTTTGGCTGACAAGCCTC+AGG | + | chr1_1:7168279-7168298 | Msa0004700:CDS | 55.0% | |
| TGGCTGACAAGCCTCAGGTA+TGG | + | chr1_1:7168284-7168303 | Msa0004700:intron | 55.0% | |
| GGCTGACAAGCCTCAGGTAT+GGG | + | chr1_1:7168285-7168304 | Msa0004700:intron | 55.0% | |
| CTGCCCACCAAAGATGGATC+TGG | + | chr1_1:7168434-7168453 | Msa0004700:intron | 55.0% | |
| ACTCAGAAACCTATGGGGGC+TGG | + | chr1_1:7168537-7168556 | Msa0004700:CDS | 55.0% | |
| CTCAGAAACCTATGGGGGCT+GGG | + | chr1_1:7168538-7168557 | Msa0004700:CDS | 55.0% | |
| TCAGAAACCTATGGGGGCTG+GGG | + | chr1_1:7168539-7168558 | Msa0004700:CDS | 55.0% | |
| ! | AGTGTTGCTGCTGAGCAAGG+CGG | + | chr1_1:7168576-7168595 | Msa0004700:CDS | 55.0% |
| GACACTGCAGGACCGGATTC+TGG | + | chr1_1:7168125-7168144 | Msa0004700:CDS | 60.0% | |
| ACTGCAGGACCGGATTCTGG+AGG | + | chr1_1:7168128-7168147 | Msa0004700:CDS | 60.0% | |
| AAACCTATGGGGGCTGGGGA+TGG | + | chr1_1:7168543-7168562 | Msa0004700:CDS | 60.0% | |
| AACCTATGGGGGCTGGGGAT+GGG | + | chr1_1:7168544-7168563 | Msa0004700:CDS | 60.0% | |
| GACACTGCAGGACCGGATTC+TGG | + | chr1_1:7168125-7168144 | Msa0004700:CDS | 60.0% | |
| ACTGCAGGACCGGATTCTGG+AGG | + | chr1_1:7168128-7168147 | Msa0004700:CDS | 60.0% | |
| AAACCTATGGGGGCTGGGGA+TGG | + | chr1_1:7168543-7168562 | Msa0004700:CDS | 60.0% | |
| AACCTATGGGGGCTGGGGAT+GGG | + | chr1_1:7168544-7168563 | Msa0004700:CDS | 60.0% | |
| ACCTATGGGGGCTGGGGATG+GGG | + | chr1_1:7168545-7168564 | Msa0004700:CDS | 65.0% | |
| ACCTATGGGGGCTGGGGATG+GGG | + | chr1_1:7168545-7168564 | Msa0004700:CDS | 65.0% | |
| GCCCCATCCCCAGCCCCCAT+AGG | - | chr1_1:7168549-7168568 | None:intergenic | 75.0% | |
| ATGGGGGCTGGGGATGGGGC+TGG | + | chr1_1:7168549-7168568 | Msa0004700:CDS | 75.0% | |
| GCCCCATCCCCAGCCCCCAT+AGG | - | chr1_1:7168549-7168568 | None:intergenic | 75.0% | |
| ATGGGGGCTGGGGATGGGGC+TGG | + | chr1_1:7168549-7168568 | Msa0004700:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 7168058 | 7169190 | 7168058 | ID=Msa0004700;Name=Msa0004700 |
| chr1_1 | mRNA | 7168058 | 7169190 | 7168058 | ID=Msa0004700-mRNA-1;Parent=Msa0004700;Name=Msa0004700-mRNA-1;_AED=0.30;_eAED=0.36;_QI=0|0|0|0.66|1|1|3|0|152 |
| chr1_1 | exon | 7168058 | 7168300 | 7168058 | ID=Msa0004700-mRNA-1:exon:2475;Parent=Msa0004700-mRNA-1 |
| chr1_1 | exon | 7168447 | 7168635 | 7168447 | ID=Msa0004700-mRNA-1:exon:2476;Parent=Msa0004700-mRNA-1 |
| chr1_1 | exon | 7169164 | 7169190 | 7169164 | ID=Msa0004700-mRNA-1:exon:2477;Parent=Msa0004700-mRNA-1 |
| chr1_1 | CDS | 7168058 | 7168300 | 7168058 | ID=Msa0004700-mRNA-1:cds;Parent=Msa0004700-mRNA-1 |
| chr1_1 | CDS | 7168447 | 7168635 | 7168447 | ID=Msa0004700-mRNA-1:cds;Parent=Msa0004700-mRNA-1 |
| chr1_1 | CDS | 7169164 | 7169190 | 7169164 | ID=Msa0004700-mRNA-1:cds;Parent=Msa0004700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
