Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0004750 | sp|Q6H8A9|NAC23_ORYSJ | 32.919 | 161 | 99 | 4 | 4 | 158 | 12 | 169 | 2.63e-16 | 79.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0004750 | TF | NAC |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0004750 | MtrunA17_Chr5g0398971 | 32.704 | 159 | 82 | 8 | 4 | 146 | 7 | 156 | 2.75e-16 | 77.0 |
| Msa0004750 | MtrunA17_Chr2g0318101 | 33.544 | 158 | 93 | 5 | 4 | 155 | 15 | 166 | 1.41e-15 | 75.1 |
| Msa0004750 | MtrunA17_Chr4g0050701 | 29.747 | 158 | 87 | 6 | 4 | 147 | 11 | 158 | 3.29e-15 | 71.6 |
| Msa0004750 | MtrunA17_Chr8g0345731 | 30.128 | 156 | 93 | 5 | 2 | 145 | 22 | 173 | 1.55e-14 | 69.7 |
| Msa0004750 | MtrunA17_Chr4g0047841 | 35.075 | 134 | 76 | 4 | 4 | 132 | 15 | 142 | 2.35e-14 | 71.6 |
| Msa0004750 | MtrunA17_Chr7g0263931 | 32.075 | 159 | 84 | 6 | 4 | 145 | 11 | 162 | 6.41e-14 | 70.1 |
| Msa0004750 | MtrunA17_Chr2g0309891 | 31.646 | 158 | 85 | 8 | 4 | 146 | 6 | 155 | 6.77e-14 | 70.1 |
| Msa0004750 | MtrunA17_Chr7g0266701 | 31.138 | 167 | 89 | 8 | 1 | 146 | 1 | 162 | 1.01e-13 | 68.9 |
| Msa0004750 | MtrunA17_Chr2g0326361 | 30.380 | 158 | 88 | 5 | 4 | 145 | 14 | 165 | 1.64e-13 | 68.9 |
| Msa0004750 | MtrunA17_Chr7g0261411 | 33.333 | 153 | 84 | 7 | 4 | 146 | 10 | 154 | 3.27e-13 | 67.8 |
| Msa0004750 | MtrunA17_Chr8g0372121 | 31.818 | 154 | 88 | 6 | 4 | 146 | 6 | 153 | 3.69e-13 | 67.8 |
| Msa0004750 | MtrunA17_Chr4g0017921 | 30.460 | 174 | 99 | 9 | 4 | 164 | 8 | 172 | 4.84e-13 | 67.8 |
| Msa0004750 | MtrunA17_Chr8g0384351 | 28.758 | 153 | 75 | 6 | 4 | 147 | 10 | 137 | 6.32e-13 | 65.5 |
| Msa0004750 | MtrunA17_Chr5g0417001 | 27.711 | 166 | 92 | 6 | 2 | 146 | 12 | 170 | 6.88e-13 | 67.4 |
| Msa0004750 | MtrunA17_Chr3g0130101 | 27.835 | 194 | 115 | 7 | 2 | 179 | 5 | 189 | 1.15e-12 | 66.6 |
| Msa0004750 | MtrunA17_Chr8g0359921 | 31.210 | 157 | 86 | 6 | 4 | 146 | 14 | 162 | 1.29e-12 | 66.6 |
| Msa0004750 | MtrunA17_Chr8g0361731 | 27.711 | 166 | 93 | 6 | 2 | 146 | 12 | 171 | 1.98e-12 | 66.2 |
| Msa0004750 | MtrunA17_Chr3g0128111 | 30.818 | 159 | 78 | 10 | 7 | 146 | 45 | 190 | 4.21e-12 | 64.3 |
| Msa0004750 | MtrunA17_Chr2g0318081 | 30.128 | 156 | 87 | 6 | 4 | 146 | 16 | 162 | 5.63e-12 | 64.7 |
| Msa0004750 | MtrunA17_Chr3g0128151 | 32.099 | 162 | 78 | 10 | 4 | 146 | 22 | 170 | 5.71e-12 | 65.1 |
| Msa0004750 | MtrunA17_Chr6g0453451 | 28.144 | 167 | 97 | 7 | 4 | 154 | 20 | 179 | 1.47e-11 | 63.2 |
| Msa0004750 | MtrunA17_Chr5g0400461 | 29.114 | 158 | 90 | 7 | 4 | 145 | 6 | 157 | 2.68e-11 | 62.8 |
| Msa0004750 | MtrunA17_Chr3g0130321 | 28.743 | 167 | 83 | 6 | 4 | 147 | 7 | 160 | 3.64e-11 | 60.8 |
| Msa0004750 | MtrunA17_Chr1g0197351 | 31.902 | 163 | 83 | 7 | 4 | 146 | 42 | 196 | 4.04e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0004750 | AT2G24430.2 | 35.669 | 157 | 82 | 6 | 2 | 146 | 14 | 163 | 8.58e-17 | 78.6 |
| Msa0004750 | AT2G24430.1 | 35.669 | 157 | 82 | 6 | 2 | 146 | 14 | 163 | 8.58e-17 | 78.6 |
| Msa0004750 | AT2G27300.1 | 28.230 | 209 | 124 | 8 | 4 | 197 | 14 | 211 | 3.42e-16 | 77.0 |
| Msa0004750 | AT4G36160.2 | 32.278 | 158 | 90 | 6 | 4 | 150 | 14 | 165 | 5.23e-16 | 77.0 |
| Msa0004750 | AT4G36160.1 | 32.278 | 158 | 90 | 6 | 4 | 150 | 10 | 161 | 5.59e-16 | 77.0 |
| Msa0004750 | AT4G36160.3 | 32.278 | 158 | 90 | 6 | 4 | 150 | 10 | 161 | 5.59e-16 | 77.0 |
| Msa0004750 | AT1G71930.2 | 31.210 | 157 | 91 | 5 | 4 | 149 | 9 | 159 | 6.00e-15 | 73.6 |
| Msa0004750 | AT1G71930.1 | 31.210 | 157 | 91 | 5 | 4 | 149 | 9 | 159 | 6.00e-15 | 73.6 |
| Msa0004750 | AT5G64530.1 | 29.319 | 191 | 99 | 6 | 4 | 171 | 3 | 180 | 7.01e-15 | 71.2 |
| Msa0004750 | AT5G39610.1 | 32.903 | 155 | 86 | 6 | 4 | 146 | 20 | 168 | 1.15e-14 | 72.4 |
| Msa0004750 | AT1G76420.1 | 32.075 | 159 | 83 | 6 | 4 | 147 | 22 | 170 | 1.16e-14 | 72.8 |
| Msa0004750 | AT1G01720.1 | 31.056 | 161 | 84 | 6 | 4 | 147 | 7 | 157 | 1.45e-14 | 72.0 |
| Msa0004750 | AT1G26870.1 | 31.169 | 154 | 93 | 4 | 2 | 149 | 14 | 160 | 1.96e-14 | 72.4 |
| Msa0004750 | AT5G22290.1 | 27.835 | 194 | 109 | 8 | 6 | 179 | 23 | 205 | 2.42e-14 | 72.0 |
| Msa0004750 | AT4G17980.1 | 31.646 | 158 | 86 | 6 | 4 | 145 | 6 | 157 | 3.42e-14 | 70.5 |
| Msa0004750 | AT3G44290.2 | 27.517 | 149 | 88 | 6 | 6 | 145 | 16 | 153 | 5.22e-14 | 69.7 |
| Msa0004750 | AT4G17980.2 | 31.646 | 158 | 86 | 6 | 4 | 145 | 6 | 157 | 5.23e-14 | 70.5 |
| Msa0004750 | AT3G15500.1 | 32.484 | 157 | 82 | 8 | 4 | 146 | 14 | 160 | 1.18e-13 | 69.7 |
| Msa0004750 | AT3G44290.1 | 27.517 | 149 | 88 | 6 | 6 | 145 | 16 | 153 | 1.36e-13 | 69.7 |
| Msa0004750 | AT5G64530.2 | 33.588 | 131 | 74 | 4 | 4 | 134 | 3 | 120 | 1.63e-13 | 66.6 |
| Msa0004750 | AT4G35580.2 | 30.675 | 163 | 91 | 8 | 1 | 149 | 6 | 160 | 2.03e-13 | 69.7 |
| Msa0004750 | AT4G35580.1 | 30.675 | 163 | 91 | 8 | 1 | 149 | 6 | 160 | 2.17e-13 | 69.7 |
| Msa0004750 | AT4G35580.3 | 30.675 | 163 | 91 | 8 | 1 | 149 | 6 | 160 | 2.21e-13 | 69.7 |
| Msa0004750 | AT3G29035.1 | 30.968 | 155 | 89 | 5 | 4 | 146 | 24 | 172 | 2.54e-13 | 68.9 |
| Msa0004750 | AT4G10350.1 | 30.387 | 181 | 94 | 10 | 4 | 168 | 9 | 173 | 2.71e-13 | 68.9 |
| Msa0004750 | AT1G52890.1 | 32.278 | 158 | 81 | 8 | 4 | 146 | 14 | 160 | 3.24e-13 | 68.6 |
| Msa0004750 | AT5G17260.1 | 31.013 | 158 | 86 | 7 | 4 | 146 | 6 | 155 | 3.33e-13 | 68.9 |
| Msa0004750 | AT5G63790.1 | 32.099 | 162 | 82 | 7 | 4 | 147 | 50 | 201 | 5.03e-13 | 67.8 |
| Msa0004750 | AT5G63790.2 | 32.099 | 162 | 82 | 7 | 4 | 147 | 60 | 211 | 5.52e-13 | 67.8 |
| Msa0004750 | AT1G54330.1 | 31.373 | 153 | 88 | 6 | 4 | 146 | 6 | 151 | 5.92e-13 | 67.8 |
| Msa0004750 | AT4G27410.2 | 30.128 | 156 | 87 | 6 | 4 | 146 | 14 | 160 | 2.38e-12 | 65.9 |
| Msa0004750 | AT1G32510.1 | 29.268 | 164 | 88 | 7 | 3 | 145 | 5 | 161 | 4.86e-12 | 64.7 |
| Msa0004750 | AT3G15510.1 | 31.579 | 152 | 92 | 5 | 10 | 155 | 23 | 168 | 5.83e-12 | 65.1 |
| Msa0004750 | AT5G13180.1 | 28.947 | 152 | 92 | 5 | 4 | 146 | 14 | 158 | 6.01e-12 | 64.3 |
| Msa0004750 | AT3G03200.1 | 31.013 | 158 | 86 | 7 | 4 | 146 | 6 | 155 | 6.53e-12 | 65.1 |
| Msa0004750 | AT5G46590.1 | 30.625 | 160 | 83 | 8 | 4 | 145 | 6 | 155 | 7.22e-12 | 64.3 |
| Msa0004750 | AT2G43000.1 | 28.289 | 152 | 92 | 5 | 6 | 146 | 20 | 165 | 1.14e-11 | 63.5 |
Find 52 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAAATTATGCTTTCAATTA+TGG | 0.116873 | 1_1:-7203539 | Msa0004750:CDS |
| CAATGGTTCTGACCTGATTC+AGG | 0.237830 | 1_1:-7204723 | Msa0004750:CDS |
| GGCACTGTAAGACGGGATTT+TGG | 0.238007 | 1_1:-7204589 | Msa0004750:CDS |
| CCTTGGGTGACGGAAGAAAA+AGG | 0.350861 | 1_1:+7204652 | None:intergenic |
| TTGGATCTGGATGCTGAGTT+TGG | 0.378607 | 1_1:-7204260 | Msa0004750:CDS |
| ATTGAAAGCATAATTTGCTC+AGG | 0.423054 | 1_1:+7203544 | None:intergenic |
| ACAGGTTCAGCTCCTGAATC+AGG | 0.430846 | 1_1:+7204711 | None:intergenic |
| ACTCCATTCGTCTTGTCAGC+AGG | 0.440817 | 1_1:+7204200 | None:intergenic |
| CCTCCTCTGCTCATCAACTT+TGG | 0.455099 | 1_1:+7204610 | None:intergenic |
| GAAGAGGCTCAGAATTTCAA+TGG | 0.469135 | 1_1:-7204740 | Msa0004750:CDS |
| GCAATTCAAACGGATCATAC+TGG | 0.470273 | 1_1:+7204687 | None:intergenic |
| TGGAGTTACTAAGAAACCTA+TGG | 0.475930 | 1_1:-7204183 | Msa0004750:CDS |
| GTTGATGAAGGCGATGCTGC+TGG | 0.479728 | 1_1:-7204230 | Msa0004750:CDS |
| GTGAAGCAGCAAAATTCCCT+TGG | 0.487125 | 1_1:+7204635 | None:intergenic |
| CTGCCCACCAGAGTTGGATC+TGG | 0.490020 | 1_1:-7204273 | Msa0004750:CDS |
| CAGAGGAGGCACTGTAAGAC+GGG | 0.502638 | 1_1:-7204596 | Msa0004750:CDS |
| GGAGTAAAACGCAATTCAAA+CGG | 0.503611 | 1_1:+7204677 | None:intergenic |
| AGCAAAATTCCCTTGGGTGA+CGG | 0.508819 | 1_1:+7204642 | None:intergenic |
| ACTAGTGCTGCTGCTGAGCA+AGG | 0.517825 | 1_1:-7204140 | Msa0004750:CDS |
| CAAACGGATCATACTGGTAC+AGG | 0.523566 | 1_1:+7204693 | None:intergenic |
| TTTGGAGCTATAGTTGATGA+AGG | 0.531036 | 1_1:-7204242 | Msa0004750:CDS |
| AGAATGCCATCAAAACTAGC+TGG | 0.534697 | 1_1:-7204469 | Msa0004750:CDS |
| GGAGTTACTAAGAAACCTAT+GGG | 0.538296 | 1_1:-7204182 | Msa0004750:CDS |
| GCTGTTCGAGACATTACTGT+TGG | 0.540803 | 1_1:-7204554 | Msa0004750:CDS |
| CACACTTGCTAACAATCCTC+AGG | 0.550460 | 1_1:-7204432 | Msa0004750:intron |
| TTGAAAGCATAATTTGCTCA+GGG | 0.552658 | 1_1:+7203545 | None:intergenic |
| CTCCATTCGTCTTGTCAGCA+GGG | 0.558272 | 1_1:+7204201 | None:intergenic |
| TGAAGCAGCAAAATTCCCTT+GGG | 0.560910 | 1_1:+7204636 | None:intergenic |
| TGGCAAGGTAGTGGCTAACA+AGG | 0.563537 | 1_1:+7204774 | None:intergenic |
| AAAACAAATAAATTTATACA+AGG | 0.565586 | 1_1:+7203491 | None:intergenic |
| GCATCCAGATCCAACTCTGG+TGG | 0.565861 | 1_1:+7204269 | None:intergenic |
| GTTTGACTGCCCACCAGAGT+TGG | 0.567918 | 1_1:-7204279 | Msa0004750:CDS |
| CTAACAAGGAGCTCATCAGA+AGG | 0.575725 | 1_1:+7204788 | None:intergenic |
| TGACTATGCTGTCTTGCACA+TGG | 0.580894 | 1_1:-7203578 | Msa0004750:CDS |
| CCAAAGTTGATGAGCAGAGG+AGG | 0.581145 | 1_1:-7204610 | Msa0004750:CDS |
| TAACAAGGAGCTCATCAGAA+GGG | 0.587558 | 1_1:+7204789 | None:intergenic |
| AGTGCTGCTGCTGAGCAAGG+CGG | 0.590822 | 1_1:-7204137 | Msa0004750:CDS |
| GCAGAGGAGGCACTGTAAGA+CGG | 0.596785 | 1_1:-7204597 | Msa0004750:CDS |
| GACCCTGCTGACAAGACGAA+TGG | 0.596809 | 1_1:-7204203 | Msa0004750:CDS |
| TCAGCATCCAGATCCAACTC+TGG | 0.601777 | 1_1:+7204266 | None:intergenic |
| GCAATGGAATTGCTTCCACC+TGG | 0.606391 | 1_1:-7204824 | Msa0004750:CDS |
| AACAAGGAGCTCATCAGAAG+GGG | 0.621007 | 1_1:+7204790 | None:intergenic |
| CTGCCAAAGTTGATGAGCAG+AGG | 0.624165 | 1_1:-7204613 | Msa0004750:CDS |
| CATCCAGATCCAACTCTGGT+GGG | 0.645528 | 1_1:+7204270 | None:intergenic |
| TGGAACTGATAACATGTTGG+TGG | 0.647517 | 1_1:-7204534 | Msa0004750:CDS |
| TGTTGGAACTGATAACATGT+TGG | 0.651961 | 1_1:-7204537 | Msa0004750:CDS |
| GAAGGGGCGAAGTCAACACC+AGG | 0.655180 | 1_1:+7204806 | None:intergenic |
| GGGGCGAAGTCAACACCAGG+TGG | 0.667873 | 1_1:+7204809 | None:intergenic |
| TGAAAGCATAATTTGCTCAG+GGG | 0.670703 | 1_1:+7203546 | None:intergenic |
| GGAACTGATAACATGTTGGT+GGG | 0.673386 | 1_1:-7204533 | Msa0004750:CDS |
| GAGTTACTAAGAAACCTATG+GGG | 0.689164 | 1_1:-7204181 | Msa0004750:CDS |
| AGTTACTAAGAAACCTATGG+GGG | 0.728442 | 1_1:-7204180 | Msa0004750:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTAAAAATTATTATGC+AGG | - | chr1_1:7204001-7204020 | Msa0004750:intron | 10.0% |
| !! | TATAAAATGAAATGAAAATT+TGG | + | chr1_1:7204645-7204664 | None:intergenic | 10.0% |
| !!! | TATTTTAAAAATTATTATGC+AGG | - | chr1_1:7204001-7204020 | Msa0004750:intron | 10.0% |
| !! | TATAAAATGAAATGAAAATT+TGG | + | chr1_1:7204645-7204664 | None:intergenic | 10.0% |
| !! | CGTTAACTAATAAAAAAAAA+AGG | + | chr1_1:7204513-7204532 | None:intergenic | 15.0% |
| !! | CGTTAACTAATAAAAAAAAA+AGG | + | chr1_1:7204513-7204532 | None:intergenic | 15.0% |
| !!! | TCTCTTTTTATGTTCTATAT+AGG | - | chr1_1:7203822-7203841 | Msa0004750:intron | 20.0% |
| !! | TCAAGGATTAATTAATGTAT+TGG | - | chr1_1:7203960-7203979 | Msa0004750:intron | 20.0% |
| !! | AATATAAAGAGAGATCAAAA+TGG | + | chr1_1:7204263-7204282 | None:intergenic | 20.0% |
| !! | ATAAGATCAACAACATTAAT+TGG | + | chr1_1:7204288-7204307 | None:intergenic | 20.0% |
| !!! | ATTTTATAATGAAGACAAGA+AGG | - | chr1_1:7204657-7204676 | Msa0004750:CDS | 20.0% |
| !!! | TCTCTTTTTATGTTCTATAT+AGG | - | chr1_1:7203822-7203841 | Msa0004750:intron | 20.0% |
| !! | TCAAGGATTAATTAATGTAT+TGG | - | chr1_1:7203960-7203979 | Msa0004750:intron | 20.0% |
| !! | AATATAAAGAGAGATCAAAA+TGG | + | chr1_1:7204263-7204282 | None:intergenic | 20.0% |
| !! | ATAAGATCAACAACATTAAT+TGG | + | chr1_1:7204288-7204307 | None:intergenic | 20.0% |
| !!! | ATTTTATAATGAAGACAAGA+AGG | - | chr1_1:7204657-7204676 | Msa0004750:CDS | 20.0% |
| ! | CTTGATTAAATAATGAACAG+AGG | + | chr1_1:7203945-7203964 | None:intergenic | 25.0% |
| ! | CTCTGTTCATTATTTAATCA+AGG | - | chr1_1:7203943-7203962 | Msa0004750:intron | 25.0% |
| ! | AAAAAATACCATCACATGAA+TGG | + | chr1_1:7204354-7204373 | None:intergenic | 25.0% |
| !!! | TGAATTGCTTTGTTTGTTTT+TGG | - | chr1_1:7204694-7204713 | Msa0004750:CDS | 25.0% |
| ! | GCAAATTATGCTTTCAATTA+TGG | - | chr1_1:7204786-7204805 | Msa0004750:CDS | 25.0% |
| ! | CTTGATTAAATAATGAACAG+AGG | + | chr1_1:7203945-7203964 | None:intergenic | 25.0% |
| ! | CTCTGTTCATTATTTAATCA+AGG | - | chr1_1:7203943-7203962 | Msa0004750:intron | 25.0% |
| ! | AAAAAATACCATCACATGAA+TGG | + | chr1_1:7204354-7204373 | None:intergenic | 25.0% |
| !!! | TGAATTGCTTTGTTTGTTTT+TGG | - | chr1_1:7204694-7204713 | Msa0004750:CDS | 25.0% |
| ! | GCAAATTATGCTTTCAATTA+TGG | - | chr1_1:7204786-7204805 | Msa0004750:CDS | 25.0% |
| ! | TCAAATGTCACAGATTTTGA+AGG | - | chr1_1:7204215-7204234 | Msa0004750:CDS | 30.0% |
| !!! | GTTTGTTTTTGGTGTTTATC+AGG | - | chr1_1:7204705-7204724 | Msa0004750:CDS | 30.0% |
| !! | TTGAAAGCATAATTTGCTCA+GGG | + | chr1_1:7204783-7204802 | None:intergenic | 30.0% |
| !! | ATTGAAAGCATAATTTGCTC+AGG | + | chr1_1:7204784-7204803 | None:intergenic | 30.0% |
| ! | TCAAATGTCACAGATTTTGA+AGG | - | chr1_1:7204215-7204234 | Msa0004750:CDS | 30.0% |
| !!! | GTTTGTTTTTGGTGTTTATC+AGG | - | chr1_1:7204705-7204724 | Msa0004750:CDS | 30.0% |
| !! | TTGAAAGCATAATTTGCTCA+GGG | + | chr1_1:7204783-7204802 | None:intergenic | 30.0% |
| !! | ATTGAAAGCATAATTTGCTC+AGG | + | chr1_1:7204784-7204803 | None:intergenic | 30.0% |
| !!! | CTTCATTGTTTTTGTTGGCA+AGG | + | chr1_1:7203569-7203588 | None:intergenic | 35.0% |
| TGCCAACAAAAACAATGAAG+AGG | - | chr1_1:7203569-7203588 | Msa0004750:CDS | 35.0% | |
| !!! | AGCCTCTTCATTGTTTTTGT+TGG | + | chr1_1:7203574-7203593 | None:intergenic | 35.0% |
| GGAGTAAAACGCAATTCAAA+CGG | + | chr1_1:7203651-7203670 | None:intergenic | 35.0% | |
| TGTTGGAACTGATAACATGT+TGG | - | chr1_1:7203788-7203807 | Msa0004750:intron | 35.0% | |
| !! | TTTGGAGCTATAGTTGATGA+AGG | - | chr1_1:7204083-7204102 | Msa0004750:intron | 35.0% |
| TGGAGTTACTAAGAAACCTA+TGG | - | chr1_1:7204142-7204161 | Msa0004750:CDS | 35.0% | |
| GGAGTTACTAAGAAACCTAT+GGG | - | chr1_1:7204143-7204162 | Msa0004750:CDS | 35.0% | |
| GAGTTACTAAGAAACCTATG+GGG | - | chr1_1:7204144-7204163 | Msa0004750:CDS | 35.0% | |
| AGTTACTAAGAAACCTATGG+GGG | - | chr1_1:7204145-7204164 | Msa0004750:CDS | 35.0% | |
| AACTCAATCCATTCATGTGA+TGG | - | chr1_1:7204343-7204362 | Msa0004750:intron | 35.0% | |
| ACATTCAGTAGCAAAGATTG+AGG | + | chr1_1:7204382-7204401 | None:intergenic | 35.0% | |
| ATGACGTGATTTGAAGAATC+TGG | + | chr1_1:7204548-7204567 | None:intergenic | 35.0% | |
| !! | TGAAAGCATAATTTGCTCAG+GGG | + | chr1_1:7204782-7204801 | None:intergenic | 35.0% |
| !!! | CTTCATTGTTTTTGTTGGCA+AGG | + | chr1_1:7203569-7203588 | None:intergenic | 35.0% |
| TGCCAACAAAAACAATGAAG+AGG | - | chr1_1:7203569-7203588 | Msa0004750:CDS | 35.0% | |
| !!! | AGCCTCTTCATTGTTTTTGT+TGG | + | chr1_1:7203574-7203593 | None:intergenic | 35.0% |
| GGAGTAAAACGCAATTCAAA+CGG | + | chr1_1:7203651-7203670 | None:intergenic | 35.0% | |
| TGTTGGAACTGATAACATGT+TGG | - | chr1_1:7203788-7203807 | Msa0004750:intron | 35.0% | |
| !! | TTTGGAGCTATAGTTGATGA+AGG | - | chr1_1:7204083-7204102 | Msa0004750:intron | 35.0% |
| TGGAGTTACTAAGAAACCTA+TGG | - | chr1_1:7204142-7204161 | Msa0004750:CDS | 35.0% | |
| GGAGTTACTAAGAAACCTAT+GGG | - | chr1_1:7204143-7204162 | Msa0004750:CDS | 35.0% | |
| GAGTTACTAAGAAACCTATG+GGG | - | chr1_1:7204144-7204163 | Msa0004750:CDS | 35.0% | |
| AGTTACTAAGAAACCTATGG+GGG | - | chr1_1:7204145-7204164 | Msa0004750:CDS | 35.0% | |
| AACTCAATCCATTCATGTGA+TGG | - | chr1_1:7204343-7204362 | Msa0004750:intron | 35.0% | |
| ACATTCAGTAGCAAAGATTG+AGG | + | chr1_1:7204382-7204401 | None:intergenic | 35.0% | |
| ATGACGTGATTTGAAGAATC+TGG | + | chr1_1:7204548-7204567 | None:intergenic | 35.0% | |
| !! | TGAAAGCATAATTTGCTCAG+GGG | + | chr1_1:7204782-7204801 | None:intergenic | 35.0% |
| TAACAAGGAGCTCATCAGAA+GGG | + | chr1_1:7203539-7203558 | None:intergenic | 40.0% | |
| !! | TGTTTTTGTTGGCAAGGTAG+TGG | + | chr1_1:7203563-7203582 | None:intergenic | 40.0% |
| GAAGAGGCTCAGAATTTCAA+TGG | - | chr1_1:7203585-7203604 | Msa0004750:CDS | 40.0% | |
| GCAATTCAAACGGATCATAC+TGG | + | chr1_1:7203641-7203660 | None:intergenic | 40.0% | |
| TGAAGCAGCAAAATTCCCTT+GGG | + | chr1_1:7203692-7203711 | None:intergenic | 40.0% | |
| ! | ACGGGATTTTGGATGCAAAA+GGG | - | chr1_1:7203747-7203766 | Msa0004750:intron | 40.0% |
| TGGAACTGATAACATGTTGG+TGG | - | chr1_1:7203791-7203810 | Msa0004750:intron | 40.0% | |
| GGAACTGATAACATGTTGGT+GGG | - | chr1_1:7203792-7203811 | Msa0004750:intron | 40.0% | |
| !! | AGTTTTGATGGCATTCTGAG+CGG | + | chr1_1:7203853-7203872 | None:intergenic | 40.0% |
| AGAATGCCATCAAAACTAGC+TGG | - | chr1_1:7203856-7203875 | Msa0004750:intron | 40.0% | |
| !!! | CATAGTCCAGCTAGTTTTGA+TGG | + | chr1_1:7203865-7203884 | None:intergenic | 40.0% |
| TTGCTAACAATCCTCAGGTA+TGG | - | chr1_1:7203898-7203917 | Msa0004750:intron | 40.0% | |
| TAACAAGGAGCTCATCAGAA+GGG | + | chr1_1:7203539-7203558 | None:intergenic | 40.0% | |
| !! | TGTTTTTGTTGGCAAGGTAG+TGG | + | chr1_1:7203563-7203582 | None:intergenic | 40.0% |
| GAAGAGGCTCAGAATTTCAA+TGG | - | chr1_1:7203585-7203604 | Msa0004750:CDS | 40.0% | |
| GCAATTCAAACGGATCATAC+TGG | + | chr1_1:7203641-7203660 | None:intergenic | 40.0% | |
| TGAAGCAGCAAAATTCCCTT+GGG | + | chr1_1:7203692-7203711 | None:intergenic | 40.0% | |
| ! | ACGGGATTTTGGATGCAAAA+GGG | - | chr1_1:7203747-7203766 | Msa0004750:intron | 40.0% |
| TGGAACTGATAACATGTTGG+TGG | - | chr1_1:7203791-7203810 | Msa0004750:intron | 40.0% | |
| GGAACTGATAACATGTTGGT+GGG | - | chr1_1:7203792-7203811 | Msa0004750:intron | 40.0% | |
| !! | AGTTTTGATGGCATTCTGAG+CGG | + | chr1_1:7203853-7203872 | None:intergenic | 40.0% |
| AGAATGCCATCAAAACTAGC+TGG | - | chr1_1:7203856-7203875 | Msa0004750:intron | 40.0% | |
| !!! | CATAGTCCAGCTAGTTTTGA+TGG | + | chr1_1:7203865-7203884 | None:intergenic | 40.0% |
| TTGCTAACAATCCTCAGGTA+TGG | - | chr1_1:7203898-7203917 | Msa0004750:intron | 40.0% | |
| AACAAGGAGCTCATCAGAAG+GGG | + | chr1_1:7203538-7203557 | None:intergenic | 45.0% | |
| CTAACAAGGAGCTCATCAGA+AGG | + | chr1_1:7203540-7203559 | None:intergenic | 45.0% | |
| !! | CAATGGTTCTGACCTGATTC+AGG | - | chr1_1:7203602-7203621 | Msa0004750:intron | 45.0% |
| CAAACGGATCATACTGGTAC+AGG | + | chr1_1:7203635-7203654 | None:intergenic | 45.0% | |
| ! | CTTTTTCTTCCGTCACCCAA+GGG | - | chr1_1:7203674-7203693 | Msa0004750:intron | 45.0% |
| AGCAAAATTCCCTTGGGTGA+CGG | + | chr1_1:7203686-7203705 | None:intergenic | 45.0% | |
| GTGAAGCAGCAAAATTCCCT+TGG | + | chr1_1:7203693-7203712 | None:intergenic | 45.0% | |
| ! | GACGGGATTTTGGATGCAAA+AGG | - | chr1_1:7203746-7203765 | Msa0004750:intron | 45.0% |
| ! | CGGGATTTTGGATGCAAAAG+GGG | - | chr1_1:7203748-7203767 | Msa0004750:intron | 45.0% |
| ! | GGGATTTTGGATGCAAAAGG+GGG | - | chr1_1:7203749-7203768 | Msa0004750:intron | 45.0% |
| GCTGTTCGAGACATTACTGT+TGG | - | chr1_1:7203771-7203790 | Msa0004750:intron | 45.0% | |
| ! | CACACTTGCTAACAATCCTC+AGG | - | chr1_1:7203893-7203912 | Msa0004750:intron | 45.0% |
| TTTCGCAAATGCCATACCTG+AGG | + | chr1_1:7203912-7203931 | None:intergenic | 45.0% | |
| TTGGATCTGGATGCTGAGTT+TGG | - | chr1_1:7204065-7204084 | Msa0004750:intron | 45.0% | |
| !!! | AGATTTTGAAGGCACTCTGC+AGG | - | chr1_1:7204226-7204245 | Msa0004750:CDS | 45.0% |
| TGACTATGCTGTCTTGCACA+TGG | - | chr1_1:7204747-7204766 | Msa0004750:CDS | 45.0% | |
| AACAAGGAGCTCATCAGAAG+GGG | + | chr1_1:7203538-7203557 | None:intergenic | 45.0% | |
| CTAACAAGGAGCTCATCAGA+AGG | + | chr1_1:7203540-7203559 | None:intergenic | 45.0% | |
| !! | CAATGGTTCTGACCTGATTC+AGG | - | chr1_1:7203602-7203621 | Msa0004750:intron | 45.0% |
| CAAACGGATCATACTGGTAC+AGG | + | chr1_1:7203635-7203654 | None:intergenic | 45.0% | |
| ! | CTTTTTCTTCCGTCACCCAA+GGG | - | chr1_1:7203674-7203693 | Msa0004750:intron | 45.0% |
| AGCAAAATTCCCTTGGGTGA+CGG | + | chr1_1:7203686-7203705 | None:intergenic | 45.0% | |
| GTGAAGCAGCAAAATTCCCT+TGG | + | chr1_1:7203693-7203712 | None:intergenic | 45.0% | |
| ! | GACGGGATTTTGGATGCAAA+AGG | - | chr1_1:7203746-7203765 | Msa0004750:intron | 45.0% |
| ! | CGGGATTTTGGATGCAAAAG+GGG | - | chr1_1:7203748-7203767 | Msa0004750:intron | 45.0% |
| ! | GGGATTTTGGATGCAAAAGG+GGG | - | chr1_1:7203749-7203768 | Msa0004750:intron | 45.0% |
| GCTGTTCGAGACATTACTGT+TGG | - | chr1_1:7203771-7203790 | Msa0004750:intron | 45.0% | |
| ! | CACACTTGCTAACAATCCTC+AGG | - | chr1_1:7203893-7203912 | Msa0004750:intron | 45.0% |
| TTTCGCAAATGCCATACCTG+AGG | + | chr1_1:7203912-7203931 | None:intergenic | 45.0% | |
| TTGGATCTGGATGCTGAGTT+TGG | - | chr1_1:7204065-7204084 | Msa0004750:intron | 45.0% | |
| !!! | AGATTTTGAAGGCACTCTGC+AGG | - | chr1_1:7204226-7204245 | Msa0004750:CDS | 45.0% |
| TGACTATGCTGTCTTGCACA+TGG | - | chr1_1:7204747-7204766 | Msa0004750:CDS | 45.0% | |
| ! | TGGCAAGGTAGTGGCTAACA+AGG | + | chr1_1:7203554-7203573 | None:intergenic | 50.0% |
| ACAGGTTCAGCTCCTGAATC+AGG | + | chr1_1:7203617-7203636 | None:intergenic | 50.0% | |
| !! | GGGTGACGGAAGAAAAAGGA+CGG | + | chr1_1:7203672-7203691 | None:intergenic | 50.0% |
| !! | CCTTGGGTGACGGAAGAAAA+AGG | + | chr1_1:7203676-7203695 | None:intergenic | 50.0% |
| ! | CCTTTTTCTTCCGTCACCCA+AGG | - | chr1_1:7203673-7203692 | Msa0004750:intron | 50.0% |
| !! | CTGCCAAAGTTGATGAGCAG+AGG | - | chr1_1:7203712-7203731 | Msa0004750:intron | 50.0% |
| CCTCCTCTGCTCATCAACTT+TGG | + | chr1_1:7203718-7203737 | None:intergenic | 50.0% | |
| !! | CCAAAGTTGATGAGCAGAGG+AGG | - | chr1_1:7203715-7203734 | Msa0004750:intron | 50.0% |
| ! | GGCACTGTAAGACGGGATTT+TGG | - | chr1_1:7203736-7203755 | Msa0004750:intron | 50.0% |
| CATCCAGATCCAACTCTGGT+GGG | + | chr1_1:7204058-7204077 | None:intergenic | 50.0% | |
| TCAGCATCCAGATCCAACTC+TGG | + | chr1_1:7204062-7204081 | None:intergenic | 50.0% | |
| CTCCATTCGTCTTGTCAGCA+GGG | + | chr1_1:7204127-7204146 | None:intergenic | 50.0% | |
| ACTCCATTCGTCTTGTCAGC+AGG | + | chr1_1:7204128-7204147 | None:intergenic | 50.0% | |
| ACTAAGAAACCTATGGGGGC+TGG | - | chr1_1:7204149-7204168 | Msa0004750:CDS | 50.0% | |
| CTAAGAAACCTATGGGGGCT+GGG | - | chr1_1:7204150-7204169 | Msa0004750:CDS | 50.0% | |
| TAAGAAACCTATGGGGGCTG+GGG | - | chr1_1:7204151-7204170 | Msa0004750:CDS | 50.0% | |
| ! | TGGCAAGGTAGTGGCTAACA+AGG | + | chr1_1:7203554-7203573 | None:intergenic | 50.0% |
| ACAGGTTCAGCTCCTGAATC+AGG | + | chr1_1:7203617-7203636 | None:intergenic | 50.0% | |
| !! | GGGTGACGGAAGAAAAAGGA+CGG | + | chr1_1:7203672-7203691 | None:intergenic | 50.0% |
| !! | CCTTGGGTGACGGAAGAAAA+AGG | + | chr1_1:7203676-7203695 | None:intergenic | 50.0% |
| ! | CCTTTTTCTTCCGTCACCCA+AGG | - | chr1_1:7203673-7203692 | Msa0004750:intron | 50.0% |
| !! | CTGCCAAAGTTGATGAGCAG+AGG | - | chr1_1:7203712-7203731 | Msa0004750:intron | 50.0% |
| CCTCCTCTGCTCATCAACTT+TGG | + | chr1_1:7203718-7203737 | None:intergenic | 50.0% | |
| !! | CCAAAGTTGATGAGCAGAGG+AGG | - | chr1_1:7203715-7203734 | Msa0004750:intron | 50.0% |
| ! | GGCACTGTAAGACGGGATTT+TGG | - | chr1_1:7203736-7203755 | Msa0004750:intron | 50.0% |
| CATCCAGATCCAACTCTGGT+GGG | + | chr1_1:7204058-7204077 | None:intergenic | 50.0% | |
| TCAGCATCCAGATCCAACTC+TGG | + | chr1_1:7204062-7204081 | None:intergenic | 50.0% | |
| CTCCATTCGTCTTGTCAGCA+GGG | + | chr1_1:7204127-7204146 | None:intergenic | 50.0% | |
| ACTCCATTCGTCTTGTCAGC+AGG | + | chr1_1:7204128-7204147 | None:intergenic | 50.0% | |
| ACTAAGAAACCTATGGGGGC+TGG | - | chr1_1:7204149-7204168 | Msa0004750:CDS | 50.0% | |
| CTAAGAAACCTATGGGGGCT+GGG | - | chr1_1:7204150-7204169 | Msa0004750:CDS | 50.0% | |
| TAAGAAACCTATGGGGGCTG+GGG | - | chr1_1:7204151-7204170 | Msa0004750:CDS | 50.0% | |
| !! | GCAGAGGAGGCACTGTAAGA+CGG | - | chr1_1:7203728-7203747 | Msa0004750:intron | 55.0% |
| !! | CAGAGGAGGCACTGTAAGAC+GGG | - | chr1_1:7203729-7203748 | Msa0004750:intron | 55.0% |
| GTTTGACTGCCCACCAGAGT+TGG | - | chr1_1:7204046-7204065 | Msa0004750:intron | 55.0% | |
| GCATCCAGATCCAACTCTGG+TGG | + | chr1_1:7204059-7204078 | None:intergenic | 55.0% | |
| ! | GTTGATGAAGGCGATGCTGC+TGG | - | chr1_1:7204095-7204114 | Msa0004750:intron | 55.0% |
| GACCCTGCTGACAAGACGAA+TGG | - | chr1_1:7204122-7204141 | Msa0004750:CDS | 55.0% | |
| ! | ACTAGTGCTGCTGCTGAGCA+AGG | - | chr1_1:7204185-7204204 | Msa0004750:CDS | 55.0% |
| !! | GCAGAGGAGGCACTGTAAGA+CGG | - | chr1_1:7203728-7203747 | Msa0004750:intron | 55.0% |
| !! | CAGAGGAGGCACTGTAAGAC+GGG | - | chr1_1:7203729-7203748 | Msa0004750:intron | 55.0% |
| GTTTGACTGCCCACCAGAGT+TGG | - | chr1_1:7204046-7204065 | Msa0004750:intron | 55.0% | |
| GCATCCAGATCCAACTCTGG+TGG | + | chr1_1:7204059-7204078 | None:intergenic | 55.0% | |
| ! | GTTGATGAAGGCGATGCTGC+TGG | - | chr1_1:7204095-7204114 | Msa0004750:intron | 55.0% |
| GACCCTGCTGACAAGACGAA+TGG | - | chr1_1:7204122-7204141 | Msa0004750:CDS | 55.0% | |
| ! | ACTAGTGCTGCTGCTGAGCA+AGG | - | chr1_1:7204185-7204204 | Msa0004750:CDS | 55.0% |
| GAAGGGGCGAAGTCAACACC+AGG | + | chr1_1:7203522-7203541 | None:intergenic | 60.0% | |
| CTGCCCACCAGAGTTGGATC+TGG | - | chr1_1:7204052-7204071 | Msa0004750:intron | 60.0% | |
| AAACCTATGGGGGCTGGGGA+TGG | - | chr1_1:7204155-7204174 | Msa0004750:CDS | 60.0% | |
| AACCTATGGGGGCTGGGGAT+GGG | - | chr1_1:7204156-7204175 | Msa0004750:CDS | 60.0% | |
| ! | AGTGCTGCTGCTGAGCAAGG+CGG | - | chr1_1:7204188-7204207 | Msa0004750:CDS | 60.0% |
| GAAGGGGCGAAGTCAACACC+AGG | + | chr1_1:7203522-7203541 | None:intergenic | 60.0% | |
| CTGCCCACCAGAGTTGGATC+TGG | - | chr1_1:7204052-7204071 | Msa0004750:intron | 60.0% | |
| AAACCTATGGGGGCTGGGGA+TGG | - | chr1_1:7204155-7204174 | Msa0004750:CDS | 60.0% | |
| AACCTATGGGGGCTGGGGAT+GGG | - | chr1_1:7204156-7204175 | Msa0004750:CDS | 60.0% | |
| ! | AGTGCTGCTGCTGAGCAAGG+CGG | - | chr1_1:7204188-7204207 | Msa0004750:CDS | 60.0% |
| GGGGCGAAGTCAACACCAGG+TGG | + | chr1_1:7203519-7203538 | None:intergenic | 65.0% | |
| ACCTATGGGGGCTGGGGATG+GGG | - | chr1_1:7204157-7204176 | Msa0004750:CDS | 65.0% | |
| GGGGCGAAGTCAACACCAGG+TGG | + | chr1_1:7203519-7203538 | None:intergenic | 65.0% | |
| ACCTATGGGGGCTGGGGATG+GGG | - | chr1_1:7204157-7204176 | Msa0004750:CDS | 65.0% | |
| GCCCCATCCCCAGCCCCCAT+AGG | + | chr1_1:7204161-7204180 | None:intergenic | 75.0% | |
| ATGGGGGCTGGGGATGGGGC+TGG | - | chr1_1:7204161-7204180 | Msa0004750:CDS | 75.0% | |
| GCCCCATCCCCAGCCCCCAT+AGG | + | chr1_1:7204161-7204180 | None:intergenic | 75.0% | |
| ATGGGGGCTGGGGATGGGGC+TGG | - | chr1_1:7204161-7204180 | Msa0004750:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 7203504 | 7204843 | 7203504 | ID=Msa0004750;Name=Msa0004750 |
| chr1_1 | mRNA | 7203504 | 7204843 | 7203504 | ID=Msa0004750-mRNA-1;Parent=Msa0004750;Name=Msa0004750-mRNA-1;_AED=0.62;_eAED=0.76;_QI=0|0|0|0.66|1|1|3|0|250 |
| chr1_1 | exon | 7204433 | 7204843 | 7204433 | ID=Msa0004750-mRNA-1:exon:2534;Parent=Msa0004750-mRNA-1 |
| chr1_1 | exon | 7204100 | 7204324 | 7204100 | ID=Msa0004750-mRNA-1:exon:2533;Parent=Msa0004750-mRNA-1 |
| chr1_1 | exon | 7203504 | 7203620 | 7203504 | ID=Msa0004750-mRNA-1:exon:2532;Parent=Msa0004750-mRNA-1 |
| chr1_1 | CDS | 7204433 | 7204843 | 7204433 | ID=Msa0004750-mRNA-1:cds;Parent=Msa0004750-mRNA-1 |
| chr1_1 | CDS | 7204100 | 7204324 | 7204100 | ID=Msa0004750-mRNA-1:cds;Parent=Msa0004750-mRNA-1 |
| chr1_1 | CDS | 7203504 | 7203620 | 7203504 | ID=Msa0004750-mRNA-1:cds;Parent=Msa0004750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
