AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0004820

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0004820 MtrunA17_Chr1g0153161 96.173 392 15 0 96 487 21 412 0.0 739
Msa0004820 MtrunA17_Chr8g0372101 51.587 126 59 2 96 220 22 146 2.61e-28 118
Msa0004820 MtrunA17_Chr8g0372101 46.000 100 51 2 382 481 461 557 9.02e-18 86.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0004820 AT1G19860.2 43.333 420 186 16 94 484 19 415 6.06e-85 268
Msa0004820 AT1G19860.1 42.584 418 188 15 96 484 19 413 8.79e-84 265
Msa0004820 AT5G66270.1 26.304 441 216 15 96 461 21 427 1.72e-26 112
Msa0004820 AT3G51180.1 33.478 230 116 8 96 300 23 240 1.93e-17 85.5

Find 141 sgRNAs with CRISPR-Local

Find 334 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGAAACTGGCGGCAAATT+AGG 0.194412 1_1:-7288824 None:intergenic
ATTTACTTTCATGTTAAAAT+TGG 0.202521 1_1:+7289065 Msa0004820:three_prime_UTR
CATGTTAAAATTGGCATAAA+TGG 0.216173 1_1:+7289074 Msa0004820:three_prime_UTR
AACATGAAAGTAAATTAAAA+TGG 0.238916 1_1:-7289057 None:intergenic
AGAATATTATTGAGTAATTC+AGG 0.252544 1_1:-7288080 None:intergenic
TTGCTGGTTCTGGCGATTAC+TGG 0.255064 1_1:-7288456 None:intergenic
GCAATAGCTGGACTGATTTC+AGG 0.255929 1_1:-7288332 None:intergenic
TACATTATCTCCTGGTATAT+TGG 0.266652 1_1:+7287950 Msa0004820:CDS
AGTGGTCTCAACTTGATTAA+AGG 0.268577 1_1:-7288213 None:intergenic
TCGTCAACATCCACTGAAAT+AGG 0.270410 1_1:-7287855 None:intergenic
TTGATAATGGTTGCTGGTTC+TGG 0.279964 1_1:-7288466 None:intergenic
GACGATTCCCATTACATTGA+TGG 0.304640 1_1:+7287873 Msa0004820:CDS
TGTCTACTCAATGGCATCTT+AGG 0.305114 1_1:+7288309 Msa0004820:CDS
GGCCTCCCCATCAAAATAAA+TGG 0.309355 1_1:-7288730 None:intergenic
CCATCTTCAACAGGCGTAAT+CGG 0.319857 1_1:-7287912 None:intergenic
GTGGTCTCAACTTGATTAAA+GGG 0.324176 1_1:-7288212 None:intergenic
TAGTTCAAAGAGAATGAAAA+TGG 0.338707 1_1:+7288655 Msa0004820:CDS
ATTCTTTATGATTGTAACTA+AGG 0.343987 1_1:+7288919 Msa0004820:three_prime_UTR
CCAGCTAATAACTGGTATTT+CGG 0.350750 1_1:-7287245 None:intergenic
TGACGAGGGATTACCTTGTT+GGG 0.359371 1_1:-7288624 None:intergenic
TTTGTTGAAGGGACCTCAAC+AGG 0.365719 1_1:-7288362 None:intergenic
CTGACGAGGGATTACCTTGT+TGG 0.373906 1_1:-7288625 None:intergenic
TCAACTTGATTAAAGGGATT+AGG 0.374101 1_1:-7288206 None:intergenic
ACCAACTTCTCAATCACTTC+CGG 0.375302 1_1:-7288110 None:intergenic
CAGAAACTGGCGGCAAATTA+GGG 0.377427 1_1:-7288823 None:intergenic
GGTCTATTACACATTTGATA+TGG 0.380526 1_1:+7288766 Msa0004820:three_prime_UTR
CATAGTTTGATAATGGTTGC+TGG 0.387584 1_1:-7288472 None:intergenic
CTATAACTCTGCATTGAGAC+TGG 0.401250 1_1:-7286190 None:intergenic
CAACAAGGTAATCCCTCGTC+AGG 0.403842 1_1:+7288626 Msa0004820:CDS
AACATGACCATCAATGTAAT+GGG 0.405673 1_1:-7287880 None:intergenic
GTAAAGTTGACAGAAATTCT+TGG 0.406741 1_1:+7285969 Msa0004820:CDS
AGCTCCATTCCGACATCCTC+TGG 0.406929 1_1:-7288567 None:intergenic
GGTTTAATCCAGCTAATAAC+TGG 0.414260 1_1:-7287253 None:intergenic
CCGAAATACCAGTTATTAGC+TGG 0.425996 1_1:+7287245 Msa0004820:CDS
CAACATGACCATCAATGTAA+TGG 0.430043 1_1:-7287881 None:intergenic
ATAAATGTATGATCAGAAAC+TGG 0.437227 1_1:-7288836 None:intergenic
TGGCGATTACTGGAGGAGTA+TGG 0.439812 1_1:-7288446 None:intergenic
GAAAATCGAAGAGAGTTTCA+TGG 0.443092 1_1:+7284043 Msa0004820:CDS
TCCGGAAGTGATTGAGAAGT+TGG 0.446609 1_1:+7288109 Msa0004820:CDS
AGGAATCTCCTTCACAAGTT+GGG 0.446886 1_1:+7287092 Msa0004820:CDS
CCCACATCCCCATCTTCAAC+AGG 0.453414 1_1:-7287921 None:intergenic
CCGATTACGCCTGTTGAAGA+TGG 0.453700 1_1:+7287912 Msa0004820:CDS
CATCTTCAACAGGCGTAATC+GGG 0.456517 1_1:-7287911 None:intergenic
TGGCCCTCCCATGTTGGAAG+TGG 0.472480 1_1:-7285891 None:intergenic
GAGGAATCTCCTTCACAAGT+TGG 0.477493 1_1:+7287091 Msa0004820:CDS
CTCACATGGCAAGTGGTGGC+TGG 0.478796 1_1:+7287648 Msa0004820:CDS
CGATTACGCCTGTTGAAGAT+GGG 0.483143 1_1:+7287913 Msa0004820:CDS
ACAGGAGTAGCAGCAATAGC+TGG 0.488249 1_1:-7288344 None:intergenic
TTCCGAGTTAGATCTTTGTC+AGG 0.491528 1_1:+7284068 Msa0004820:CDS
CAATAATATTCTCAACAATC+CGG 0.493677 1_1:+7288091 Msa0004820:CDS
TTCGTGGATAAATAGCTTCA+AGG 0.494743 1_1:-7287719 None:intergenic
TTGTTGCCTCAAGGAGAAGC+TGG 0.494944 1_1:+7287154 Msa0004820:CDS
TATGATTGTAACTAAGGATG+AGG 0.499183 1_1:+7288925 Msa0004820:three_prime_UTR
GAAGGGCCGATCCTCTTGTT+GGG 0.500523 1_1:+7286216 Msa0004820:CDS
ACTGTATCATAGTTTGATAA+TGG 0.503276 1_1:-7288479 None:intergenic
TCTTACATGGCTGGTGATGT+TGG 0.503583 1_1:+7288704 Msa0004820:three_prime_UTR
AGTATTTGATGAGGATATAG+TGG 0.507215 1_1:-7288231 None:intergenic
AGAAGGGCCGATCCTCTTGT+TGG 0.509208 1_1:+7286215 Msa0004820:CDS
ATGCAGAGTTATAGAGAGAA+GGG 0.518069 1_1:+7286199 Msa0004820:CDS
TTATCTCCTGGTATATTGGA+TGG 0.518348 1_1:+7287954 Msa0004820:CDS
CAGTTAACTGAAGTCTTACA+TGG 0.523109 1_1:+7288691 Msa0004820:exon
ATCTCAGCCACTTCCAACAT+GGG 0.525224 1_1:+7285884 Msa0004820:CDS
ACCTCCGGCTGTGTGAGTAT+AGG 0.526743 1_1:-7288270 None:intergenic
TAGCTGGATTAAACCACCTA+AGG 0.527680 1_1:+7287261 Msa0004820:CDS
GCATGAGTTCCCTCAAATCC+AGG 0.528859 1_1:-7287196 None:intergenic
AGACTCGTACTTTGGAGGAA+TGG 0.532082 1_1:-7287748 None:intergenic
TATAACTCTGCATTGAGACT+GGG 0.532253 1_1:-7286189 None:intergenic
AGAGAAGACTCGTACTTTGG+AGG 0.538641 1_1:-7287753 None:intergenic
GGGAGGCCTGGATGCATGCA+AGG 0.544937 1_1:+7288745 Msa0004820:three_prime_UTR
AATAGACCTTGCATGCATCC+AGG 0.546936 1_1:-7288751 None:intergenic
GACGAGGGATTACCTTGTTG+GGG 0.547183 1_1:-7288623 None:intergenic
ACAAGGATGATATCTTTGCT+TGG 0.550411 1_1:-7287135 None:intergenic
CTGACTTGGCCCTCCCATGT+TGG 0.550437 1_1:-7285897 None:intergenic
AGTTGACAGAAATTCTTGGT+TGG 0.553134 1_1:+7285973 Msa0004820:CDS
GCCTGTTGAAGATGGGGATG+TGG 0.558484 1_1:+7287920 Msa0004820:CDS
TCACACAGCCGGAGGTCAGA+TGG 0.558835 1_1:+7288277 Msa0004820:CDS
GGAGGAATGGAAGATATTCG+TGG 0.560244 1_1:-7287735 None:intergenic
TAACTGAAGTCTTACATGGC+TGG 0.560377 1_1:+7288695 Msa0004820:exon
AATGCAGAGTTATAGAGAGA+AGG 0.560735 1_1:+7286198 Msa0004820:CDS
GAATTCAGCCCAACTTGTGA+AGG 0.561325 1_1:-7287100 None:intergenic
GATCTCAGCCACTTCCAACA+TGG 0.561348 1_1:+7285883 Msa0004820:CDS
TGAAGATGGGGATGTGGGAG+CGG 0.563372 1_1:+7287926 Msa0004820:CDS
CAGAAAATATCACACTGACT+TGG 0.563490 1_1:-7285911 None:intergenic
CTAATAACTGGTATTTCGGA+CGG 0.563575 1_1:-7287241 None:intergenic
CGTCAACTATGTCTACTCAA+TGG 0.565260 1_1:+7288300 Msa0004820:CDS
AAAAGCATTTGATGATGATC+CGG 0.565613 1_1:-7288174 None:intergenic
AGCTTCTCCTTGAGGCAACA+AGG 0.565922 1_1:-7287152 None:intergenic
GTATAAATACATCATCCAGC+TGG 0.566536 1_1:-7288978 None:intergenic
GGAGCGGATACATTATCTCC+TGG 0.567885 1_1:+7287942 Msa0004820:CDS
ACTTGATTAAAGGGATTAGG+AGG 0.568417 1_1:-7288203 None:intergenic
GGTTAGGTTATTCTTATCTG+AGG 0.568521 1_1:+7287072 Msa0004820:intron
TCGTTAATTTGCCCAACAAG+AGG 0.569074 1_1:-7286227 None:intergenic
TATTGCTGCTACTCCTGTTG+AGG 0.569271 1_1:+7288349 Msa0004820:CDS
TTAATAGTTCCAGAGGATGT+CGG 0.569456 1_1:+7288558 Msa0004820:CDS
GCTGGTGCTTGCAGAAGTAT+CGG 0.571164 1_1:+7285944 Msa0004820:CDS
CTGGTTCTGGCGATTACTGG+AGG 0.572380 1_1:-7288453 None:intergenic
GATATTTGATCAACATCAGA+GGG 0.578943 1_1:+7287686 Msa0004820:CDS
AGGATGATATCTTTGCTTGG+AGG 0.580593 1_1:-7287132 None:intergenic
CACTGTTACGACTGTGTCGA+TGG 0.583220 1_1:+7287983 Msa0004820:CDS
ATATCATCCTTGTTGCCTCA+AGG 0.583248 1_1:+7287145 Msa0004820:CDS
TCTTCCTATACTCACACAGC+CGG 0.583250 1_1:+7288266 Msa0004820:CDS
TGATATATCTTATGCAAGAG+AGG 0.585763 1_1:-7283952 None:intergenic
TGAAAGTAAATTAAAATGGA+CGG 0.587246 1_1:-7289053 None:intergenic
TCGATGCAGTCCTATTTCAG+TGG 0.588300 1_1:+7287845 Msa0004820:intron
AATTTGCCCAACAAGAGGAT+CGG 0.592689 1_1:-7286222 None:intergenic
AAAGAATCAACAAGAAAGAG+AGG 0.596879 1_1:-7288903 None:intergenic
TGAACTATGCATCCCTGACG+AGG 0.599293 1_1:-7288639 None:intergenic
AAGAGCTTGATTCAGCAACA+TGG 0.600253 1_1:+7288401 Msa0004820:CDS
TCAGAACCAGCTTCTCCTTG+AGG 0.604428 1_1:-7287160 None:intergenic
AGTTCCAGAGGATGTCGGAA+TGG 0.612631 1_1:+7288563 Msa0004820:CDS
AGATTGGAGATACCACCAGC+TGG 0.612636 1_1:+7288963 Msa0004820:three_prime_UTR
ATAACTCTGCATTGAGACTG+GGG 0.614438 1_1:-7286188 None:intergenic
AGTTGACGCCATCTGACCTC+CGG 0.616959 1_1:-7288285 None:intergenic
TAAATACATCATCCAGCTGG+TGG 0.620850 1_1:-7288975 None:intergenic
TACCTGACAAAGATCTAACT+CGG 0.627396 1_1:-7284070 None:intergenic
CAGCCACTTCCAACATGGGA+GGG 0.629186 1_1:+7285888 Msa0004820:CDS
TTTGAACCATCCAATATACC+AGG 0.631062 1_1:-7287960 None:intergenic
GAACTATGCATCCCTGACGA+GGG 0.631209 1_1:-7288638 None:intergenic
TGACAAAGATCTAACTCGGA+AGG 0.633363 1_1:-7284066 None:intergenic
CCTGTTGAAGATGGGGATGT+GGG 0.634741 1_1:+7287921 Msa0004820:CDS
GCTAGATCTCACATGGCAAG+TGG 0.640415 1_1:+7287641 Msa0004820:CDS
GATACTTCTGCAAGCACCAG+CGG 0.641670 1_1:-7285942 None:intergenic
AAATGATGCATCATGCTGAA+AGG 0.642980 1_1:-7288597 None:intergenic
TCAGCCACTTCCAACATGGG+AGG 0.643487 1_1:+7285887 Msa0004820:CDS
GCATCATTTCAGCCCCAACA+AGG 0.644422 1_1:+7288611 Msa0004820:CDS
AGATATTTGATCAACATCAG+AGG 0.644462 1_1:+7287685 Msa0004820:CDS
AGATCTCACATGGCAAGTGG+TGG 0.645516 1_1:+7287644 Msa0004820:CDS
TCCTATACTCACACAGCCGG+AGG 0.650386 1_1:+7288269 Msa0004820:CDS
AGATCGTGCTAGATCTCACA+TGG 0.650447 1_1:+7287634 Msa0004820:intron
TTAGTGAAGAGCAGTGAACA+TGG 0.653142 1_1:+7288044 Msa0004820:CDS
AACAAGGTAATCCCTCGTCA+GGG 0.664383 1_1:+7288627 Msa0004820:CDS
GATTACGCCTGTTGAAGATG+GGG 0.664481 1_1:+7287914 Msa0004820:CDS
AATGTATGATCAGAAACTGG+CGG 0.667429 1_1:-7288833 None:intergenic
GCACAGTATGCACAAAACAC+CGG 0.673863 1_1:+7288155 Msa0004820:CDS
TGTGTGAGTATAGGAAGAAG+TGG 0.682691 1_1:-7288261 None:intergenic
TAACTCTGCATTGAGACTGG+GGG 0.693132 1_1:-7286187 None:intergenic
GGTGCTTGCAGAAGTATCGG+AGG 0.700785 1_1:+7285947 Msa0004820:CDS
GCGGTGTGTGAAAATATGCG+TGG 0.706081 1_1:+7284015 Msa0004820:exon
TCATGACCGAAAATCTGCAG+CGG 0.709831 1_1:+7288880 Msa0004820:three_prime_UTR
AGCTTGATTCAGCAACATGG+AGG 0.714964 1_1:+7288404 Msa0004820:CDS
TGAGTTCCCTCAAATCCAGG+AGG 0.756506 1_1:-7287193 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAATATATGAAAAAATTA+GGG - chr1_1:7284162-7284181 None:intergenic 10.0%
!! AAGAAATATATGAAAAAATT+AGG - chr1_1:7284163-7284182 None:intergenic 10.0%
!! ATTATAAACTAATTCTAATA+TGG - chr1_1:7285081-7285100 None:intergenic 10.0%
!! TTTCTTATTCAAATTATTAT+GGG - chr1_1:7286389-7286408 None:intergenic 10.0%
!! GATAATATTAATAATATATG+TGG - chr1_1:7286600-7286619 None:intergenic 10.0%
!! TTTAAAAATGAATCGATTAT+TGG - chr1_1:7284139-7284158 None:intergenic 15.0%
!!! TAATGTACTAAAAAAGTATA+CGG - chr1_1:7284619-7284638 None:intergenic 15.0%
!!! TGAAACTAATGTTATTTTTT+TGG - chr1_1:7285500-7285519 None:intergenic 15.0%
!!! AAAAAAATAACATTAGTTTC+AGG + chr1_1:7285499-7285518 Msa0004820:intron 15.0%
!! CTTTCTTATTCAAATTATTA+TGG - chr1_1:7286390-7286409 None:intergenic 15.0%
!! TAATATTTATATTTCAACGT+TGG + chr1_1:7287329-7287348 Msa0004820:intron 15.0%
!! AAAAAAAGAAATATCAAACA+AGG - chr1_1:7287781-7287800 None:intergenic 15.0%
!! AACATGAAAGTAAATTAAAA+TGG - chr1_1:7289060-7289079 None:intergenic 15.0%
!! ATTTACTTTCATGTTAAAAT+TGG + chr1_1:7289065-7289084 Msa0004820:three_prime_UTR 15.0%
!!! AGATATATCAAATACGTTTT+CGG + chr1_1:7283965-7283984 Msa0004820:five_prime_UTR 20.0%
!! ATTTAATGATGAATTACTTG+TGG + chr1_1:7284469-7284488 Msa0004820:intron 20.0%
!! AACAAATGTCTAATCATAAA+AGG - chr1_1:7285180-7285199 None:intergenic 20.0%
!!! TATGATTAGACATTTGTTAA+AGG + chr1_1:7285182-7285201 Msa0004820:intron 20.0%
!! ATTGAAAAATGCAACTAAAT+TGG - chr1_1:7285549-7285568 None:intergenic 20.0%
!!! GATTTCTTTATTTAAACTCA+CGG - chr1_1:7285719-7285738 None:intergenic 20.0%
!! TTTATGATTATTGTAGACTA+GGG - chr1_1:7286267-7286286 None:intergenic 20.0%
!!! TTTTATGATTATTGTAGACT+AGG - chr1_1:7286268-7286287 None:intergenic 20.0%
!! ATTATGGGTAATCATAATAA+AGG - chr1_1:7286374-7286393 None:intergenic 20.0%
!! TATAACTACAAAAATACCTT+AGG - chr1_1:7287280-7287299 None:intergenic 20.0%
!! AATATTACTGAAGATGATTA+TGG - chr1_1:7287316-7287335 None:intergenic 20.0%
!! ATATCATAACTCGAAAAAAA+TGG + chr1_1:7287544-7287563 Msa0004820:intron 20.0%
!! AGAATATTATTGAGTAATTC+AGG - chr1_1:7288083-7288102 None:intergenic 20.0%
!! GAACTATTAAAAAAGATACA+AGG - chr1_1:7288548-7288567 None:intergenic 20.0%
!! ATTCTTTATGATTGTAACTA+AGG + chr1_1:7288919-7288938 Msa0004820:three_prime_UTR 20.0%
!! TGAAAGTAAATTAAAATGGA+CGG - chr1_1:7289056-7289075 None:intergenic 20.0%
!!! CTGTATATTCTATTGTTTTG+TGG + chr1_1:7283993-7284012 Msa0004820:five_prime_UTR 25.0%
!!! TATATTCTATTGTTTTGTGG+CGG + chr1_1:7283996-7284015 Msa0004820:five_prime_UTR 25.0%
! AATTTACATGCAAAGCTAAA+AGG - chr1_1:7284252-7284271 None:intergenic 25.0%
! TAAGGAAGTTAAGATGTATT+TGG + chr1_1:7284432-7284451 Msa0004820:intron 25.0%
! AAGGAAGTTAAGATGTATTT+GGG + chr1_1:7284433-7284452 Msa0004820:intron 25.0%
!!! GAGAAATTGCAATTATTTTG+CGG + chr1_1:7284793-7284812 Msa0004820:intron 25.0%
!! GTTAATTGGATTAGATTAGA+TGG + chr1_1:7284856-7284875 Msa0004820:intron 25.0%
! ATGCTGAAGATATTTATCAA+AGG - chr1_1:7285039-7285058 None:intergenic 25.0%
! TTCAAAGTAACTTCATTGAA+TGG - chr1_1:7285134-7285153 None:intergenic 25.0%
!! GTAATTGCTTATTGTTTTCT+TGG + chr1_1:7285457-7285476 Msa0004820:intron 25.0%
!! TTTGAGAATTTTTATGCTGT+TGG + chr1_1:7285570-7285589 Msa0004820:intron 25.0%
! AAGTGAAAACATCAGATATT+CGG - chr1_1:7285629-7285648 None:intergenic 25.0%
! ATCCTTACTAACAGTAATAT+CGG - chr1_1:7285761-7285780 None:intergenic 25.0%
!! TACTGTTAGTAAGGATATTT+TGG + chr1_1:7285765-7285784 Msa0004820:intron 25.0%
!! TGTTCTTTTTCTGTTTCAAA+AGG + chr1_1:7285847-7285866 Msa0004820:intron 25.0%
!!! TTTTGAAAAAGCTTGCAATT+TGG + chr1_1:7286117-7286136 Msa0004820:intron 25.0%
!!! ATCTGTTTTCACTTTTAATC+AGG + chr1_1:7286148-7286167 Msa0004820:intron 25.0%
! TTATGATTATTGTAGACTAG+GGG - chr1_1:7286266-7286285 None:intergenic 25.0%
! TATCTCTAGTATGAATCTTA+TGG + chr1_1:7286324-7286343 Msa0004820:intron 25.0%
! CAAAATGGCTATATTTATTC+TGG + chr1_1:7286482-7286501 Msa0004820:intron 25.0%
! TAAAATATGACAGTGAAAGA+TGG - chr1_1:7286673-7286692 None:intergenic 25.0%
!!! GGTGGTTACTTTTTTTTAAT+AGG - chr1_1:7286915-7286934 None:intergenic 25.0%
! GTACTTTATAATGAACATCT+GGG - chr1_1:7287002-7287021 None:intergenic 25.0%
! TGTACTTTATAATGAACATC+TGG - chr1_1:7287003-7287022 None:intergenic 25.0%
! CAATAATATTCTCAACAATC+CGG + chr1_1:7288091-7288110 Msa0004820:CDS 25.0%
!! AGTTTACATCTTTTGTTGAA+GGG - chr1_1:7288376-7288395 None:intergenic 25.0%
!! TAGTTTACATCTTTTGTTGA+AGG - chr1_1:7288377-7288396 None:intergenic 25.0%
! ACTGTATCATAGTTTGATAA+TGG - chr1_1:7288482-7288501 None:intergenic 25.0%
!!! ATCTTTTTTAATAGTTCCAG+AGG + chr1_1:7288551-7288570 Msa0004820:CDS 25.0%
! TAGTTCAAAGAGAATGAAAA+TGG + chr1_1:7288655-7288674 Msa0004820:CDS 25.0%
!! TTAGCGTTTTATATGATAGT+TGG + chr1_1:7288794-7288813 Msa0004820:three_prime_UTR 25.0%
! ATAAATGTATGATCAGAAAC+TGG - chr1_1:7288839-7288858 None:intergenic 25.0%
!!! TCTCTTTTTTTACATTCTGA+CGG + chr1_1:7289011-7289030 Msa0004820:three_prime_UTR 25.0%
! CATGTTAAAATTGGCATAAA+TGG + chr1_1:7289074-7289093 Msa0004820:three_prime_UTR 25.0%
TGATATATCTTATGCAAGAG+AGG - chr1_1:7283955-7283974 None:intergenic 30.0%
CGATTATTGGAAGTGATTAT+TGG - chr1_1:7284126-7284145 None:intergenic 30.0%
GATTAGATGATTGATGAAGT+TGG - chr1_1:7284195-7284214 None:intergenic 30.0%
! TTAATCAGGAAATTTTCCTC+TGG - chr1_1:7284219-7284238 None:intergenic 30.0%
AATTTCCTGATTAATCCGAT+CGG + chr1_1:7284225-7284244 Msa0004820:intron 30.0%
!! TTAGCTTTGCATGTAAATTC+AGG + chr1_1:7284253-7284272 Msa0004820:intron 30.0%
AAAAGTAGACTACACTGATA+AGG + chr1_1:7284414-7284433 Msa0004820:intron 30.0%
! AGTTAAGATGTATTTGGGAT+TGG + chr1_1:7284438-7284457 Msa0004820:intron 30.0%
TCCCTAATGAGTATTTATCT+GGG + chr1_1:7284502-7284521 Msa0004820:intron 30.0%
ACCCAGATAAATACTCATTA+GGG - chr1_1:7284506-7284525 None:intergenic 30.0%
AACCCAGATAAATACTCATT+AGG - chr1_1:7284507-7284526 None:intergenic 30.0%
TAATGAGTATTTATCTGGGT+TGG + chr1_1:7284506-7284525 Msa0004820:intron 30.0%
AAAACTTATCCCACTAAGTA+GGG - chr1_1:7284668-7284687 None:intergenic 30.0%
TTTCTATACGCGAAAATACA+TGG - chr1_1:7284722-7284741 None:intergenic 30.0%
! TTTTGAATTGAGACTTCTGA+CGG + chr1_1:7284748-7284767 Msa0004820:intron 30.0%
! TTGCAATTTCTCTAAAGACT+AGG - chr1_1:7284785-7284804 None:intergenic 30.0%
! CTTTCAGTTTTCTTTGTCTT+GGG + chr1_1:7284828-7284847 Msa0004820:intron 30.0%
! TTTCAGTTTTCTTTGTCTTG+GGG + chr1_1:7284829-7284848 Msa0004820:intron 30.0%
! TTGTGGGTTATTAGTGTATT+TGG + chr1_1:7284922-7284941 Msa0004820:intron 30.0%
CAGCATATATGCAAAAATGT+AGG + chr1_1:7285053-7285072 Msa0004820:intron 30.0%
! TTGTCAAATATTGGCTATGA+CGG + chr1_1:7285227-7285246 Msa0004820:intron 30.0%
!!! ACTAGTTTTCCATTTCTTCT+TGG + chr1_1:7285343-7285362 Msa0004820:intron 30.0%
TTGTATTATCACTATGTACG+TGG + chr1_1:7285402-7285421 Msa0004820:intron 30.0%
AGCAATTACTTTACTAGAAC+AGG - chr1_1:7285446-7285465 None:intergenic 30.0%
AAATGCAACTAAATTGGACA+GGG - chr1_1:7285543-7285562 None:intergenic 30.0%
AAAATGCAACTAAATTGGAC+AGG - chr1_1:7285544-7285563 None:intergenic 30.0%
AGTGAAAACATCAGATATTC+GGG - chr1_1:7285628-7285647 None:intergenic 30.0%
GAATTCGTATGAACAAAACA+AGG - chr1_1:7285652-7285671 None:intergenic 30.0%
TAATATCGGCGAAAACAAAA+GGG - chr1_1:7285747-7285766 None:intergenic 30.0%
GTAAAGTTGACAGAAATTCT+TGG + chr1_1:7285969-7285988 Msa0004820:CDS 30.0%
! GTTGTCTGAAGTGAATTAAT+TGG - chr1_1:7286003-7286022 None:intergenic 30.0%
! TTTTAATCAGGATCGTAACT+TGG + chr1_1:7286160-7286179 Msa0004820:intron 30.0%
GATTCATACTAGAGATACTT+AGG - chr1_1:7286321-7286340 None:intergenic 30.0%
TCTAGTATGAATCTTATGGA+TGG + chr1_1:7286328-7286347 Msa0004820:intron 30.0%
!!! CTCTGAAGTATGAATGTTTT+TGG + chr1_1:7286437-7286456 Msa0004820:intron 30.0%
CATTTATTGTGCACTCAAAA+TGG + chr1_1:7286467-7286486 Msa0004820:intron 30.0%
!! CTTTCACTGTCATATTTTAG+TGG + chr1_1:7286674-7286693 Msa0004820:intron 30.0%
!! ACAAAGAAATAAACGGGTTT+TGG - chr1_1:7286793-7286812 None:intergenic 30.0%
TCACAGCACAAAGAAATAAA+CGG - chr1_1:7286800-7286819 None:intergenic 30.0%
!! CATATTACAAGAGTGCTAAA+AGG + chr1_1:7287021-7287040 Msa0004820:intron 30.0%
AACTACAAAAATACCTTAGG+TGG - chr1_1:7287277-7287296 None:intergenic 30.0%
TGTCAAACCTATGTATATAG+CGG + chr1_1:7287413-7287432 Msa0004820:intron 30.0%
GAAAAAACCGCTATATACAT+AGG - chr1_1:7287423-7287442 None:intergenic 30.0%
ACAGTATGCCAATATATCAT+CGG + chr1_1:7287471-7287490 Msa0004820:intron 30.0%
AGATATTTGATCAACATCAG+AGG + chr1_1:7287685-7287704 Msa0004820:CDS 30.0%
GATATTTGATCAACATCAGA+GGG + chr1_1:7287686-7287705 Msa0004820:CDS 30.0%
AACATGACCATCAATGTAAT+GGG - chr1_1:7287883-7287902 None:intergenic 30.0%
TACATTATCTCCTGGTATAT+TGG + chr1_1:7287950-7287969 Msa0004820:CDS 30.0%
!! AAAAGCATTTGATGATGATC+CGG - chr1_1:7288177-7288196 None:intergenic 30.0%
TCAACTTGATTAAAGGGATT+AGG - chr1_1:7288209-7288228 None:intergenic 30.0%
AGTATTTGATGAGGATATAG+TGG - chr1_1:7288234-7288253 None:intergenic 30.0%
!! GGATGAAAAAGTATTTGATG+AGG - chr1_1:7288243-7288262 None:intergenic 30.0%
!!! GTACACAATTTTAGAGCAAA+AGG + chr1_1:7288500-7288519 Msa0004820:CDS 30.0%
!!! TTGGTTGCCATTTATTTTGA+TGG + chr1_1:7288723-7288742 Msa0004820:three_prime_UTR 30.0%
!!! TGGTTGCCATTTATTTTGAT+GGG + chr1_1:7288724-7288743 Msa0004820:three_prime_UTR 30.0%
GGTCTATTACACATTTGATA+TGG + chr1_1:7288766-7288785 Msa0004820:three_prime_UTR 30.0%
AAAGAATCAACAAGAAAGAG+AGG - chr1_1:7288906-7288925 None:intergenic 30.0%
TATGATTGTAACTAAGGATG+AGG + chr1_1:7288925-7288944 Msa0004820:three_prime_UTR 30.0%
!! GTTTTGATGTTGTAACAGAT+TGG + chr1_1:7288947-7288966 Msa0004820:three_prime_UTR 30.0%
GAAAATCGAAGAGAGTTTCA+TGG + chr1_1:7284043-7284062 Msa0004820:CDS 35.0%
TACCTGACAAAGATCTAACT+CGG - chr1_1:7284073-7284092 None:intergenic 35.0%
ATCAATCATCTAATCTCCAG+AGG + chr1_1:7284200-7284219 Msa0004820:intron 35.0%
CTCCCTAATGAGTATTTATC+TGG + chr1_1:7284501-7284520 Msa0004820:intron 35.0%
CAAAACTTATCCCACTAAGT+AGG - chr1_1:7284669-7284688 None:intergenic 35.0%
! CTACTTAGTGGGATAAGTTT+TGG + chr1_1:7284667-7284686 Msa0004820:intron 35.0%
TTTGAATTGAGACTTCTGAC+GGG + chr1_1:7284749-7284768 Msa0004820:intron 35.0%
! GCTTTCAGTTTTCTTTGTCT+TGG + chr1_1:7284827-7284846 Msa0004820:intron 35.0%
GGATTAGATTAGATGGTGAA+TGG + chr1_1:7284863-7284882 Msa0004820:intron 35.0%
ACAAAAATATAGCGCGTGTT+TGG - chr1_1:7284996-7285015 None:intergenic 35.0%
TAAAGGTTTGCCACAATATC+AGG + chr1_1:7285199-7285218 Msa0004820:intron 35.0%
CTGTCAAAAATTGGCTATGA+TGG - chr1_1:7285288-7285307 None:intergenic 35.0%
! CATAGCCAATTTTTGACAGA+TGG + chr1_1:7285289-7285308 Msa0004820:intron 35.0%
AAGAACACACCAAGAAGAAA+TGG - chr1_1:7285355-7285374 None:intergenic 35.0%
GTAATATCGGCGAAAACAAA+AGG - chr1_1:7285748-7285767 None:intergenic 35.0%
!!! TTTTGGTGTTCAAACAGTCT+TGG + chr1_1:7285782-7285801 Msa0004820:intron 35.0%
! CAGAAAATATCACACTGACT+TGG - chr1_1:7285914-7285933 None:intergenic 35.0%
! CAAGTCAGTGTGATATTTTC+TGG + chr1_1:7285912-7285931 Msa0004820:CDS 35.0%
AGTTGACAGAAATTCTTGGT+TGG + chr1_1:7285973-7285992 Msa0004820:CDS 35.0%
GGCTGAATATAAGTTGCAAT+TGG + chr1_1:7286037-7286056 Msa0004820:intron 35.0%
TATAACTCTGCATTGAGACT+GGG - chr1_1:7286192-7286211 None:intergenic 35.0%
AATGCAGAGTTATAGAGAGA+AGG + chr1_1:7286198-7286217 Msa0004820:CDS 35.0%
ATGCAGAGTTATAGAGAGAA+GGG + chr1_1:7286199-7286218 Msa0004820:CDS 35.0%
ATACTAGAGATACTTAGGCT+AGG - chr1_1:7286316-7286335 None:intergenic 35.0%
CACAGCACAAAGAAATAAAC+GGG - chr1_1:7286799-7286818 None:intergenic 35.0%
! CTGTTTCCTTTTTGTTGAAC+AGG + chr1_1:7287051-7287070 Msa0004820:intron 35.0%
! TCCTTTTTGTTGAACAGGTT+AGG + chr1_1:7287056-7287075 Msa0004820:intron 35.0%
ACCTAACCTGTTCAACAAAA+AGG - chr1_1:7287060-7287079 None:intergenic 35.0%
GGTTAGGTTATTCTTATCTG+AGG + chr1_1:7287072-7287091 Msa0004820:intron 35.0%
ACAAGGATGATATCTTTGCT+TGG - chr1_1:7287138-7287157 None:intergenic 35.0%
! TCTGATGATATTTTACCTCC+TGG + chr1_1:7287178-7287197 Msa0004820:CDS 35.0%
! TATTTTACCTCCTGGATTTG+AGG + chr1_1:7287186-7287205 Msa0004820:CDS 35.0%
! ATTTTACCTCCTGGATTTGA+GGG + chr1_1:7287187-7287206 Msa0004820:CDS 35.0%
CTAATAACTGGTATTTCGGA+CGG - chr1_1:7287244-7287263 None:intergenic 35.0%
CCAGCTAATAACTGGTATTT+CGG - chr1_1:7287248-7287267 None:intergenic 35.0%
GGTTTAATCCAGCTAATAAC+TGG - chr1_1:7287256-7287275 None:intergenic 35.0%
CAGTATGCCAATATATCATC+GGG + chr1_1:7287472-7287491 Msa0004820:intron 35.0%
AGTATGCCAATATATCATCG+GGG + chr1_1:7287473-7287492 Msa0004820:intron 35.0%
TACATACCCCGATGATATAT+TGG - chr1_1:7287482-7287501 None:intergenic 35.0%
TTCGTGGATAAATAGCTTCA+AGG - chr1_1:7287722-7287741 None:intergenic 35.0%
CAACATGACCATCAATGTAA+TGG - chr1_1:7287884-7287903 None:intergenic 35.0%
TTATCTCCTGGTATATTGGA+TGG + chr1_1:7287954-7287973 Msa0004820:CDS 35.0%
TTTGAACCATCCAATATACC+AGG - chr1_1:7287963-7287982 None:intergenic 35.0%
ACTTGATTAAAGGGATTAGG+AGG - chr1_1:7288206-7288225 None:intergenic 35.0%
GTGGTCTCAACTTGATTAAA+GGG - chr1_1:7288215-7288234 None:intergenic 35.0%
AGTGGTCTCAACTTGATTAA+AGG - chr1_1:7288216-7288235 None:intergenic 35.0%
!! CATAGTTTGATAATGGTTGC+TGG - chr1_1:7288475-7288494 None:intergenic 35.0%
!! ATACAAGGCTTCGTTGTTTT+TGG - chr1_1:7288533-7288552 None:intergenic 35.0%
TTAATAGTTCCAGAGGATGT+CGG + chr1_1:7288558-7288577 Msa0004820:CDS 35.0%
AAATGATGCATCATGCTGAA+AGG - chr1_1:7288600-7288619 None:intergenic 35.0%
CAGTTAACTGAAGTCTTACA+TGG + chr1_1:7288691-7288710 Msa0004820:exon 35.0%
!!! GGTTGCCATTTATTTTGATG+GGG + chr1_1:7288725-7288744 Msa0004820:three_prime_UTR 35.0%
AATGTATGATCAGAAACTGG+CGG - chr1_1:7288836-7288855 None:intergenic 35.0%
GTATAAATACATCATCCAGC+TGG - chr1_1:7288981-7289000 None:intergenic 35.0%
TGACAAAGATCTAACTCGGA+AGG - chr1_1:7284069-7284088 None:intergenic 40.0%
TTCCGAGTTAGATCTTTGTC+AGG + chr1_1:7284068-7284087 Msa0004820:CDS 40.0%
GTCTTGTGCTGTGTAATCTT+TGG + chr1_1:7284548-7284567 Msa0004820:intron 40.0%
!! CTTAGTGGGATAAGTTTTGG+TGG + chr1_1:7284670-7284689 Msa0004820:intron 40.0%
! CAGGCACTGTTGTCAAATAT+TGG + chr1_1:7285218-7285237 Msa0004820:intron 40.0%
TGGTTGTCAAAAAATGCGCA+CGG - chr1_1:7285268-7285287 None:intergenic 40.0%
! AGCCAATTTTTGACAGATGG+AGG + chr1_1:7285292-7285311 Msa0004820:intron 40.0%
CTCCTCCATCTGTCAAAAAT+TGG - chr1_1:7285297-7285316 None:intergenic 40.0%
AAATCTGCGACAAAACACCA+CGG - chr1_1:7285320-7285339 None:intergenic 40.0%
! TTCTTCTTGGTGTGTTCTTG+TGG + chr1_1:7285356-7285375 Msa0004820:intron 40.0%
TGTTCTTGTGGTTGTTAACC+AGG + chr1_1:7285368-7285387 Msa0004820:intron 40.0%
CTGTTGCTCATGTGTTATAC+CGG + chr1_1:7285671-7285690 Msa0004820:intron 40.0%
ACTTGAAACCACACTAACAC+CGG - chr1_1:7285693-7285712 None:intergenic 40.0%
CGCCGATATTACTGTTAGTA+AGG + chr1_1:7285756-7285775 Msa0004820:intron 40.0%
ATATTCAGCCACACTATGAC+AGG - chr1_1:7286027-7286046 None:intergenic 40.0%
! TGGTCTTTGTTGTCTAACAC+TGG + chr1_1:7286057-7286076 Msa0004820:intron 40.0%
! GGTCTTTGTTGTCTAACACT+GGG + chr1_1:7286058-7286077 Msa0004820:intron 40.0%
! TTTGTTGTCTAACACTGGGA+TGG + chr1_1:7286062-7286081 Msa0004820:intron 40.0%
ATAACTCTGCATTGAGACTG+GGG - chr1_1:7286191-7286210 None:intergenic 40.0%
CTATAACTCTGCATTGAGAC+TGG - chr1_1:7286193-7286212 None:intergenic 40.0%
AATTTGCCCAACAAGAGGAT+CGG - chr1_1:7286225-7286244 None:intergenic 40.0%
!! TCGTTAATTTGCCCAACAAG+AGG - chr1_1:7286230-7286249 None:intergenic 40.0%
!!! AAACGGGTTTTGGATGAAAG+TGG - chr1_1:7286783-7286802 None:intergenic 40.0%
! CTTTGTGCTGTGAGTTTTTG+TGG + chr1_1:7286807-7286826 Msa0004820:intron 40.0%
TAGATTCTCAAGTGCATGCA+TGG - chr1_1:7286936-7286955 None:intergenic 40.0%
AGGAATCTCCTTCACAAGTT+GGG + chr1_1:7287092-7287111 Msa0004820:CDS 40.0%
AGGATGATATCTTTGCTTGG+AGG - chr1_1:7287135-7287154 None:intergenic 40.0%
ATATCATCCTTGTTGCCTCA+AGG + chr1_1:7287145-7287164 Msa0004820:CDS 40.0%
CCGAAATACCAGTTATTAGC+TGG + chr1_1:7287245-7287264 Msa0004820:CDS 40.0%
TAGCTGGATTAAACCACCTA+AGG + chr1_1:7287261-7287280 Msa0004820:CDS 40.0%
ACGTTGGTGCAAGAAAGTAA+AGG + chr1_1:7287345-7287364 Msa0004820:intron 40.0%
TCATCGGGGTATGTATTTCT+AGG + chr1_1:7287487-7287506 Msa0004820:intron 40.0%
TCGTCAACATCCACTGAAAT+AGG - chr1_1:7287858-7287877 None:intergenic 40.0%
GACGATTCCCATTACATTGA+TGG + chr1_1:7287873-7287892 Msa0004820:CDS 40.0%
TTAGTGAAGAGCAGTGAACA+TGG + chr1_1:7288044-7288063 Msa0004820:CDS 40.0%
ACCAACTTCTCAATCACTTC+CGG - chr1_1:7288113-7288132 None:intergenic 40.0%
TGTGTGAGTATAGGAAGAAG+TGG - chr1_1:7288264-7288283 None:intergenic 40.0%
CGTCAACTATGTCTACTCAA+TGG + chr1_1:7288300-7288319 Msa0004820:CDS 40.0%
TGTCTACTCAATGGCATCTT+AGG + chr1_1:7288309-7288328 Msa0004820:CDS 40.0%
AAGAGCTTGATTCAGCAACA+TGG + chr1_1:7288401-7288420 Msa0004820:CDS 40.0%
!! TTGATAATGGTTGCTGGTTC+TGG - chr1_1:7288469-7288488 None:intergenic 40.0%
TAACTGAAGTCTTACATGGC+TGG + chr1_1:7288695-7288714 Msa0004820:exon 40.0%
!!! TGCCATTTATTTTGATGGGG+AGG + chr1_1:7288728-7288747 Msa0004820:three_prime_UTR 40.0%
TAAATACATCATCCAGCTGG+TGG - chr1_1:7288978-7288997 None:intergenic 40.0%
AAGGTCCGATCGGATTAATC+AGG - chr1_1:7284233-7284252 None:intergenic 45.0%
GCAAAGCTAAAAGGTCCGAT+CGG - chr1_1:7284243-7284262 None:intergenic 45.0%
ATGTAGCCAACCCTACTTAG+TGG + chr1_1:7284655-7284674 Msa0004820:intron 45.0%
TGTAGCCAACCCTACTTAGT+GGG + chr1_1:7284656-7284675 Msa0004820:intron 45.0%
CTTATCCCACTAAGTAGGGT+TGG - chr1_1:7284664-7284683 None:intergenic 45.0%
! CAGTTTTCTTTGTCTTGGGG+TGG + chr1_1:7284832-7284851 Msa0004820:intron 45.0%
! TGTCTTGGGGTGGTGTTAAT+TGG + chr1_1:7284842-7284861 Msa0004820:intron 45.0%
TGTATGAGCAACTGCTCTTG+TGG + chr1_1:7284905-7284924 Msa0004820:intron 45.0%
GTATGAGCAACTGCTCTTGT+GGG + chr1_1:7284906-7284925 Msa0004820:intron 45.0%
GACAACAGTGCCTGATATTG+TGG - chr1_1:7285212-7285231 None:intergenic 45.0%
AATACAAAGCACAAGCAGCC+TGG - chr1_1:7285389-7285408 None:intergenic 45.0%
!! TTTCAGGTTCCAACGTCATG+TGG + chr1_1:7285515-7285534 Msa0004820:intron 45.0%
! CAGATATTCGGGTTATGCAG+AGG - chr1_1:7285617-7285636 None:intergenic 45.0%
! GTGTTATACCGGTGTTAGTG+TGG + chr1_1:7285682-7285701 Msa0004820:intron 45.0%
ATCTCAGCCACTTCCAACAT+GGG + chr1_1:7285884-7285903 Msa0004820:CDS 45.0%
!! ATTTTCTGGAGATGTACCGC+TGG + chr1_1:7285926-7285945 Msa0004820:CDS 45.0%
AGACAACACCTGTCATAGTG+TGG + chr1_1:7286016-7286035 Msa0004820:intron 45.0%
AAGGTCTCGGGATCTGATTA+GGG + chr1_1:7286092-7286111 Msa0004820:intron 45.0%
TAACTCTGCATTGAGACTGG+GGG - chr1_1:7286190-7286209 None:intergenic 45.0%
! AGCACAAAGAGTGCAAGGAA+AGG - chr1_1:7286859-7286878 None:intergenic 45.0%
TTCCTTGCACTCTTTGTGCT+TGG + chr1_1:7286859-7286878 Msa0004820:intron 45.0%
! AACCAAGCACAAAGAGTGCA+AGG - chr1_1:7286864-7286883 None:intergenic 45.0%
TGCACTCTTTGTGCTTGGTT+AGG + chr1_1:7286864-7286883 Msa0004820:intron 45.0%
ATTCTCAAGTGCATGCATGG+TGG - chr1_1:7286933-7286952 None:intergenic 45.0%
GAGGAATCTCCTTCACAAGT+TGG + chr1_1:7287091-7287110 Msa0004820:CDS 45.0%
GAATTCAGCCCAACTTGTGA+AGG - chr1_1:7287103-7287122 None:intergenic 45.0%
AGATCGTGCTAGATCTCACA+TGG + chr1_1:7287634-7287653 Msa0004820:intron 45.0%
GGAGGAATGGAAGATATTCG+TGG - chr1_1:7287738-7287757 None:intergenic 45.0%
! AGACTCGTACTTTGGAGGAA+TGG - chr1_1:7287751-7287770 None:intergenic 45.0%
AGAGAAGACTCGTACTTTGG+AGG - chr1_1:7287756-7287775 None:intergenic 45.0%
GCAAGAGAAGACTCGTACTT+TGG - chr1_1:7287759-7287778 None:intergenic 45.0%
CTGAAATAGGACTGCATCGA+AGG - chr1_1:7287845-7287864 None:intergenic 45.0%
TCGATGCAGTCCTATTTCAG+TGG + chr1_1:7287845-7287864 Msa0004820:intron 45.0%
CATCTTCAACAGGCGTAATC+GGG - chr1_1:7287914-7287933 None:intergenic 45.0%
CCATCTTCAACAGGCGTAAT+CGG - chr1_1:7287915-7287934 None:intergenic 45.0%
CGATTACGCCTGTTGAAGAT+GGG + chr1_1:7287913-7287932 Msa0004820:CDS 45.0%
GATTACGCCTGTTGAAGATG+GGG + chr1_1:7287914-7287933 Msa0004820:CDS 45.0%
TCCGGAAGTGATTGAGAAGT+TGG + chr1_1:7288109-7288128 Msa0004820:CDS 45.0%
GCACAGTATGCACAAAACAC+CGG + chr1_1:7288155-7288174 Msa0004820:CDS 45.0%
TCTTCCTATACTCACACAGC+CGG + chr1_1:7288266-7288285 Msa0004820:CDS 45.0%
! GCAATAGCTGGACTGATTTC+AGG - chr1_1:7288335-7288354 None:intergenic 45.0%
TATTGCTGCTACTCCTGTTG+AGG + chr1_1:7288349-7288368 Msa0004820:CDS 45.0%
TTTGTTGAAGGGACCTCAAC+AGG - chr1_1:7288365-7288384 None:intergenic 45.0%
AGCTTGATTCAGCAACATGG+AGG + chr1_1:7288404-7288423 Msa0004820:CDS 45.0%
TGACGAGGGATTACCTTGTT+GGG - chr1_1:7288627-7288646 None:intergenic 45.0%
AACAAGGTAATCCCTCGTCA+GGG + chr1_1:7288627-7288646 Msa0004820:CDS 45.0%
! TCTTACATGGCTGGTGATGT+TGG + chr1_1:7288704-7288723 Msa0004820:three_prime_UTR 45.0%
GGCCTCCCCATCAAAATAAA+TGG - chr1_1:7288733-7288752 None:intergenic 45.0%
!!! TTTATTTTGATGGGGAGGCC+TGG + chr1_1:7288733-7288752 Msa0004820:three_prime_UTR 45.0%
AATAGACCTTGCATGCATCC+AGG - chr1_1:7288754-7288773 None:intergenic 45.0%
CAGAAACTGGCGGCAAATTA+GGG - chr1_1:7288826-7288845 None:intergenic 45.0%
TCAGAAACTGGCGGCAAATT+AGG - chr1_1:7288827-7288846 None:intergenic 45.0%
TCATGACCGAAAATCTGCAG+CGG + chr1_1:7288880-7288899 Msa0004820:three_prime_UTR 45.0%
!! AAAAAAAAAAAAAAAAAAAC+TGG + chr1_1:7284386-7284405 Msa0004820:intron 5.0%
!! TTTATTTATATATATTATCT+TGG + chr1_1:7286889-7286908 Msa0004820:intron 5.0%
GCGGTGTGTGAAAATATGCG+TGG + chr1_1:7284015-7284034 Msa0004820:exon 50.0%
GATCTCAGCCACTTCCAACA+TGG + chr1_1:7285883-7285902 Msa0004820:CDS 50.0%
GATACTTCTGCAAGCACCAG+CGG - chr1_1:7285945-7285964 None:intergenic 50.0%
! GCTGGTGCTTGCAGAAGTAT+CGG + chr1_1:7285944-7285963 Msa0004820:CDS 50.0%
ACACTGGGATGGAGAAGTGA+AGG + chr1_1:7286073-7286092 Msa0004820:intron 50.0%
GGATGGAGAAGTGAAGGTCT+CGG + chr1_1:7286079-7286098 Msa0004820:intron 50.0%
GATGGAGAAGTGAAGGTCTC+GGG + chr1_1:7286080-7286099 Msa0004820:intron 50.0%
GAAGGTCTCGGGATCTGATT+AGG + chr1_1:7286091-7286110 Msa0004820:intron 50.0%
AGCTTCTCCTTGAGGCAACA+AGG - chr1_1:7287155-7287174 None:intergenic 50.0%
TTGTTGCCTCAAGGAGAAGC+TGG + chr1_1:7287154-7287173 Msa0004820:CDS 50.0%
TCAGAACCAGCTTCTCCTTG+AGG - chr1_1:7287163-7287182 None:intergenic 50.0%
TGAGTTCCCTCAAATCCAGG+AGG - chr1_1:7287196-7287215 None:intergenic 50.0%
GCATGAGTTCCCTCAAATCC+AGG - chr1_1:7287199-7287218 None:intergenic 50.0%
GCTAGATCTCACATGGCAAG+TGG + chr1_1:7287641-7287660 Msa0004820:CDS 50.0%
AGATCTCACATGGCAAGTGG+TGG + chr1_1:7287644-7287663 Msa0004820:CDS 50.0%
CCGATTACGCCTGTTGAAGA+TGG + chr1_1:7287912-7287931 Msa0004820:CDS 50.0%
CCTGTTGAAGATGGGGATGT+GGG + chr1_1:7287921-7287940 Msa0004820:CDS 50.0%
GGAGCGGATACATTATCTCC+TGG + chr1_1:7287942-7287961 Msa0004820:CDS 50.0%
CACTGTTACGACTGTGTCGA+TGG + chr1_1:7287983-7288002 Msa0004820:CDS 50.0%
ACAGGAGTAGCAGCAATAGC+TGG - chr1_1:7288347-7288366 None:intergenic 50.0%
TGGCGATTACTGGAGGAGTA+TGG - chr1_1:7288449-7288468 None:intergenic 50.0%
!! TTGCTGGTTCTGGCGATTAC+TGG - chr1_1:7288459-7288478 None:intergenic 50.0%
AGTTCCAGAGGATGTCGGAA+TGG + chr1_1:7288563-7288582 Msa0004820:CDS 50.0%
GCATCATTTCAGCCCCAACA+AGG + chr1_1:7288611-7288630 Msa0004820:CDS 50.0%
GACGAGGGATTACCTTGTTG+GGG - chr1_1:7288626-7288645 None:intergenic 50.0%
CTGACGAGGGATTACCTTGT+TGG - chr1_1:7288628-7288647 None:intergenic 50.0%
CAACAAGGTAATCCCTCGTC+AGG + chr1_1:7288626-7288645 Msa0004820:CDS 50.0%
GAACTATGCATCCCTGACGA+GGG - chr1_1:7288641-7288660 None:intergenic 50.0%
TGAACTATGCATCCCTGACG+AGG - chr1_1:7288642-7288661 None:intergenic 50.0%
! GCTGCAGATTTTCGGTCATG+AGG - chr1_1:7288881-7288900 None:intergenic 50.0%
AGATTGGAGATACCACCAGC+TGG + chr1_1:7288963-7288982 Msa0004820:three_prime_UTR 50.0%
ACGCACACCAATGCCAATGC+AGG + chr1_1:7284969-7284988 Msa0004820:intron 55.0%
CGCACACCAATGCCAATGCA+GGG + chr1_1:7284970-7284989 Msa0004820:intron 55.0%
! GTTTGGCCCTGCATTGGCAT+TGG - chr1_1:7284979-7284998 None:intergenic 55.0%
! TATTGGCTATGACGGCGCCA+TGG + chr1_1:7285235-7285254 Msa0004820:intron 55.0%
ATGCGCACGGAAATGCTCCA+TGG - chr1_1:7285255-7285274 None:intergenic 55.0%
TTTGACAGATGGAGGAGCCG+TGG + chr1_1:7285300-7285319 Msa0004820:intron 55.0%
GACAGGGAACCACATGACGT+TGG - chr1_1:7285527-7285546 None:intergenic 55.0%
TCAGCCACTTCCAACATGGG+AGG + chr1_1:7285887-7285906 Msa0004820:CDS 55.0%
CAGCCACTTCCAACATGGGA+GGG + chr1_1:7285888-7285907 Msa0004820:CDS 55.0%
!! GGTGCTTGCAGAAGTATCGG+AGG + chr1_1:7285947-7285966 Msa0004820:CDS 55.0%
AGAAGGGCCGATCCTCTTGT+TGG + chr1_1:7286215-7286234 Msa0004820:CDS 55.0%
GAAGGGCCGATCCTCTTGTT+GGG + chr1_1:7286216-7286235 Msa0004820:CDS 55.0%
GCCTGTTGAAGATGGGGATG+TGG + chr1_1:7287920-7287939 Msa0004820:CDS 55.0%
CCCACATCCCCATCTTCAAC+AGG - chr1_1:7287924-7287943 None:intergenic 55.0%
TGAAGATGGGGATGTGGGAG+CGG + chr1_1:7287926-7287945 Msa0004820:CDS 55.0%
TCCTATACTCACACAGCCGG+AGG + chr1_1:7288269-7288288 Msa0004820:CDS 55.0%
ACCTCCGGCTGTGTGAGTAT+AGG - chr1_1:7288273-7288292 None:intergenic 55.0%
AGTTGACGCCATCTGACCTC+CGG - chr1_1:7288288-7288307 None:intergenic 55.0%
!! CTGGTTCTGGCGATTACTGG+AGG - chr1_1:7288456-7288475 None:intergenic 55.0%
AGCTCCATTCCGACATCCTC+TGG - chr1_1:7288570-7288589 None:intergenic 55.0%
! GAGAGGCCGCTGCAGATTTT+CGG - chr1_1:7288889-7288908 None:intergenic 55.0%
TGGCCCTCCCATGTTGGAAG+TGG - chr1_1:7285894-7285913 None:intergenic 60.0%
!! CTGACTTGGCCCTCCCATGT+TGG - chr1_1:7285900-7285919 None:intergenic 60.0%
CTCACATGGCAAGTGGTGGC+TGG + chr1_1:7287648-7287667 Msa0004820:CDS 60.0%
TCACACAGCCGGAGGTCAGA+TGG + chr1_1:7288277-7288296 Msa0004820:CDS 60.0%
GCGCGTGTTTGGCCCTGCAT+TGG - chr1_1:7284985-7285004 None:intergenic 65.0%
GGGAGGCCTGGATGCATGCA+AGG + chr1_1:7288745-7288764 Msa0004820:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 7283948 7289121 7283948 ID=Msa0004820;Name=Msa0004820
chr1_1 mRNA 7283948 7289121 7283948 ID=Msa0004820-mRNA-1;Parent=Msa0004820;Name=Msa0004820-mRNA-1;_AED=0.09;_eAED=0.09;_QI=82|0.6|0.66|1|0.6|0.83|6|424|487
chr1_1 exon 7283948 7284089 7283948 ID=Msa0004820-mRNA-1:exon:2493;Parent=Msa0004820-mRNA-1
chr1_1 exon 7285869 7285994 7285869 ID=Msa0004820-mRNA-1:exon:2494;Parent=Msa0004820-mRNA-1
chr1_1 exon 7286170 7286268 7286170 ID=Msa0004820-mRNA-1:exon:2495;Parent=Msa0004820-mRNA-1
chr1_1 exon 7287073 7287282 7287073 ID=Msa0004820-mRNA-1:exon:2496;Parent=Msa0004820-mRNA-1
chr1_1 exon 7287636 7287760 7287636 ID=Msa0004820-mRNA-1:exon:2497;Parent=Msa0004820-mRNA-1
chr1_1 exon 7287854 7289121 7287854 ID=Msa0004820-mRNA-1:exon:2498;Parent=Msa0004820-mRNA-1
chr1_1 five_prime_UTR 7283948 7284029 7283948 ID=Msa0004820-mRNA-1:five_prime_utr;Parent=Msa0004820-mRNA-1
chr1_1 CDS 7284030 7284089 7284030 ID=Msa0004820-mRNA-1:cds;Parent=Msa0004820-mRNA-1
chr1_1 CDS 7285869 7285994 7285869 ID=Msa0004820-mRNA-1:cds;Parent=Msa0004820-mRNA-1
chr1_1 CDS 7286170 7286268 7286170 ID=Msa0004820-mRNA-1:cds;Parent=Msa0004820-mRNA-1
chr1_1 CDS 7287073 7287282 7287073 ID=Msa0004820-mRNA-1:cds;Parent=Msa0004820-mRNA-1
chr1_1 CDS 7287636 7287760 7287636 ID=Msa0004820-mRNA-1:cds;Parent=Msa0004820-mRNA-1
chr1_1 CDS 7287854 7288697 7287854 ID=Msa0004820-mRNA-1:cds;Parent=Msa0004820-mRNA-1
chr1_1 three_prime_UTR 7288698 7289121 7288698 ID=Msa0004820-mRNA-1:three_prime_utr;Parent=Msa0004820-mRNA-1
Gene Sequence

>Msa0004820

ATGCGTGGATTGCGAAAATCGAAGAGAGTTTCATGGCCTTCCGAGTTAGATCTTTGTCAGGAGACTGAGTGCAAGATCTCAGCCACTTCCAACATGGGAGGGCCAAGTCAGTGTGATATTTTCTGGAGATGTACCGCTGGTGCTTGCAGAAGTATCGGAGGTAAAGTTGACAGAAATTCTTGGTTGGATCGTAACTTGGTGTTCCCCCAGTCTCAATGCAGAGTTATAGAGAGAAGGGCCGATCCTCTTGTTGGGCAAATTAACGAGATATCAGTGTCTCCCCTAGTTAGGTTATTCTTATCTGAGGAATCTCCTTCACAAGTTGGGCTGAATTCTCAAGATCACCTCCAAGCAAAGATATCATCCTTGTTGCCTCAAGGAGAAGCTGGTTCTGATGATATTTTACCTCCTGGATTTGAGGGAACTCATGCTTCAAGTCAGTTTGACATTAAGCCGTCCGAAATACCAGTTATTAGCTGGATTAAACCACCTAAGATCGTGCTAGATCTCACATGGCAAGTGGTGGCTGGAGAAGAAAGCAAAGAGATATTTGATCAACATCAGAGGGAGATGAGAGTCCTTGAAGCTATTTATCCACGAATATCTTCCATTCCTCCAAATCCTATTTCAGTGGATGTTGACGATTCCCATTACATTGATGGTCATGTTGTCGTGATCCCGATTACGCCTGTTGAAGATGGGGATGTGGGAGCGGATACATTATCTCCTGGTATATTGGATGGTTCAAACACTGTTACGACTGTGTCGATGGTGTCTGATGTAGCTGCTGCATCTGTTGCTTTAACTAGCTTAGTGAAGAGCAGTGAACATGGTAATTTGATTGATCCTGAATTACTCAATAATATTCTCAACAATCCGGAAGTGATTGAGAAGTTGGTTAGAAATTATAATGTTCAAAATGCACAGTATGCACAAAACACCGGATCATCATCAAATGCTTTTTCACATCCTCCTAATCCCTTTAATCAAGTTGAGACCACTATATCCTCATCAAATACTTTTTCATCCACTTCTTCCTATACTCACACAGCCGGAGGTCAGATGGCGTCAACTATGTCTACTCAATGGCATCTTAGGCCTGAAATCAGTCCAGCTATTGCTGCTACTCCTGTTGAGGTCCCTTCAACAAAAGATGTAAACTACTATAAGAGCTTGATTCAGCAACATGGAGGAGATAAACAAGAAGCACTTCCATACTCCTCCAGTAATCGCCAGAACCAGCAACCATTATCAAACTATGATACAGTACACAATTTTAGAGCAAAAGGATCAAAACCAAAAACAACGAAGCCTTGTATCTTTTTTAATAGTTCCAGAGGATGTCGGAATGGAGCTAACTGTACCTTTCAGCATGATGCATCATTTCAGCCCCAACAAGGTAATCCCTCGTCAGGGATGCATAGTTCAAAGAGAATGAAAATGGATAATGAGATCAGCAGTTAA
Protein sequence

>Msa0004820

MRGLRKSKRVSWPSELDLCQETECKISATSNMGGPSQCDIFWRCTAGACRSIGGKVDRNSWLDRNLVFPQSQCRVIERRADPLVGQINEISVSPLVRLFLSEESPSQVGLNSQDHLQAKISSLLPQGEAGSDDILPPGFEGTHASSQFDIKPSEIPVISWIKPPKIVLDLTWQVVAGEESKEIFDQHQREMRVLEAIYPRISSIPPNPISVDVDDSHYIDGHVVVIPITPVEDGDVGADTLSPGILDGSNTVTTVSMVSDVAAASVALTSLVKSSEHGNLIDPELLNNILNNPEVIEKLVRNYNVQNAQYAQNTGSSSNAFSHPPNPFNQVETTISSSNTFSSTSSYTHTAGGQMASTMSTQWHLRPEISPAIAATPVEVPSTKDVNYYKSLIQQHGGDKQEALPYSSSNRQNQQPLSNYDTVHNFRAKGSKPKTTKPCIFFNSSRGCRNGANCTFQHDASFQPQQGNPSSGMHSSKRMKMDNEISS*