Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0004830 | sp|Q56XU4|C3H6_ARATH | 42.424 | 429 | 173 | 15 | 96 | 484 | 19 | 413 | 2.96e-83 | 266 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0004830 | TF | C3H |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0004830 | MtrunA17_Chr1g0153161 | 97.194 | 392 | 11 | 0 | 96 | 487 | 21 | 412 | 0.0 | 783 |
| Msa0004830 | MtrunA17_Chr8g0372101 | 51.587 | 126 | 59 | 2 | 96 | 220 | 22 | 146 | 2.63e-28 | 118 |
| Msa0004830 | MtrunA17_Chr8g0372101 | 46.000 | 100 | 51 | 2 | 382 | 481 | 461 | 557 | 9.26e-18 | 86.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0004830 | AT1G19860.2 | 42.459 | 431 | 174 | 15 | 94 | 484 | 19 | 415 | 1.71e-85 | 269 |
| Msa0004830 | AT1G19860.1 | 42.424 | 429 | 173 | 15 | 96 | 484 | 19 | 413 | 3.01e-84 | 266 |
| Msa0004830 | AT5G66270.1 | 26.077 | 441 | 217 | 15 | 96 | 461 | 21 | 427 | 7.58e-25 | 107 |
| Msa0004830 | AT3G51180.1 | 33.478 | 230 | 116 | 8 | 96 | 300 | 23 | 240 | 1.14e-17 | 86.3 |
Find 117 sgRNAs with CRISPR-Local
Find 311 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCTGGTTCTGGCGATTAC+TGG | 0.231142 | 1_1:+7299648 | None:intergenic |
| AGAATATTATTGAGTAATTC+AGG | 0.252544 | 1_1:+7300024 | None:intergenic |
| GCAATAGCTGGACTGATTTC+AGG | 0.255929 | 1_1:+7299772 | None:intergenic |
| TACATTATCTCCTGGTATAT+TGG | 0.266652 | 1_1:-7300154 | Msa0004830:CDS |
| TCGTCAACATCCACTGAAAT+AGG | 0.270410 | 1_1:+7300249 | None:intergenic |
| TTGATAATGGCTGCTGGTTC+TGG | 0.282121 | 1_1:+7299638 | None:intergenic |
| AGTGGTCTCAACTTGATTAA+AGG | 0.289882 | 1_1:+7299891 | None:intergenic |
| GACGATTCCCATTACATTGA+TGG | 0.304640 | 1_1:-7300231 | Msa0004830:CDS |
| CCATCTTCAACAGGCGTAAT+CGG | 0.319857 | 1_1:+7300192 | None:intergenic |
| TAGTTCAAAGAGAATGAAAA+TGG | 0.338707 | 1_1:-7299449 | Msa0004830:CDS |
| CCAGCTAATAACTGGAATTT+CGG | 0.341281 | 1_1:+7300859 | None:intergenic |
| TGACGAGGGATTACCTTGTT+GGG | 0.359371 | 1_1:+7299480 | None:intergenic |
| TTTGTTGAAGGGACCTCAAC+AGG | 0.365719 | 1_1:+7299742 | None:intergenic |
| GTGGTCTCAACTTGATTAAA+GGG | 0.370543 | 1_1:+7299892 | None:intergenic |
| CTGACGAGGGATTACCTTGT+TGG | 0.373906 | 1_1:+7299479 | None:intergenic |
| TCAACTTGATTAAAGGGATT+AGG | 0.374101 | 1_1:+7299898 | None:intergenic |
| ACCAACTTCTCAATCACTTC+CGG | 0.375302 | 1_1:+7299994 | None:intergenic |
| GGTTTAATCCAGCTAATAAC+TGG | 0.385422 | 1_1:+7300851 | None:intergenic |
| CCGAAATTCCAGTTATTAGC+TGG | 0.389535 | 1_1:-7300859 | Msa0004830:CDS |
| CTATAACTCTGCATTGAGAC+TGG | 0.401250 | 1_1:+7301917 | None:intergenic |
| CAACAAGGTAATCCCTCGTC+AGG | 0.403842 | 1_1:-7299478 | Msa0004830:CDS |
| AACATGACCATCAATGTAAT+GGG | 0.405673 | 1_1:+7300224 | None:intergenic |
| GTAAAGTTGACAGAAATTCT+TGG | 0.406741 | 1_1:-7302138 | Msa0004830:CDS |
| AGCTCCATTCCGACATCCTC+TGG | 0.406929 | 1_1:+7299537 | None:intergenic |
| CAACATGACCATCAATGTAA+TGG | 0.430043 | 1_1:+7300223 | None:intergenic |
| TGGCGATTACTGGAGGAGTA+TGG | 0.439812 | 1_1:+7299658 | None:intergenic |
| GAAAATCGAAGAGAGTTTCA+TGG | 0.443092 | 1_1:-7304135 | Msa0004830:CDS |
| TCCGGAAGTGATTGAGAAGT+TGG | 0.446609 | 1_1:-7299995 | Msa0004830:CDS |
| AGGAATCTCCTTCACAAGTT+GGG | 0.446886 | 1_1:-7301012 | Msa0004830:CDS |
| CCCACATCCCCATCTTCAAC+AGG | 0.453414 | 1_1:+7300183 | None:intergenic |
| CCGATTACGCCTGTTGAAGA+TGG | 0.453700 | 1_1:-7300192 | Msa0004830:CDS |
| CATCTTCAACAGGCGTAATC+GGG | 0.456517 | 1_1:+7300193 | None:intergenic |
| TGGCCCTCCCATGTTGGAAG+TGG | 0.472480 | 1_1:+7302216 | None:intergenic |
| GAGGAATCTCCTTCACAAGT+TGG | 0.477493 | 1_1:-7301013 | Msa0004830:CDS |
| CTCACATGGCAAGTGGTGGC+TGG | 0.478796 | 1_1:-7300455 | Msa0004830:CDS |
| CGATTACGCCTGTTGAAGAT+GGG | 0.483143 | 1_1:-7300191 | Msa0004830:CDS |
| ACAGGAGTAGCAGCAATAGC+TGG | 0.488249 | 1_1:+7299760 | None:intergenic |
| TTCCGAGTTAGATCTTTGTC+AGG | 0.491528 | 1_1:-7304110 | Msa0004830:intron |
| CAATAATATTCTCAACAATC+CGG | 0.493677 | 1_1:-7300013 | Msa0004830:CDS |
| TTCGTGGATAAATAGCTTCA+AGG | 0.494743 | 1_1:+7300384 | None:intergenic |
| TTGTTGCCTCAAGGAGAAGC+TGG | 0.494944 | 1_1:-7300950 | Msa0004830:CDS |
| GAAGGGCCGATCCTCTTGTT+GGG | 0.500523 | 1_1:-7301891 | Msa0004830:CDS |
| AGAAGGGCCGATCCTCTTGT+TGG | 0.509208 | 1_1:-7301892 | Msa0004830:CDS |
| ATGCAGAGTTATAGAGAGAA+GGG | 0.518069 | 1_1:-7301908 | Msa0004830:CDS |
| TTATCTCCTGGTATATTGGA+TGG | 0.518348 | 1_1:-7300150 | Msa0004830:CDS |
| ATCTCAGCCACTTCCAACAT+GGG | 0.525224 | 1_1:-7302223 | Msa0004830:CDS |
| ACCTCCGGCTGTGTGAGTAT+AGG | 0.526743 | 1_1:+7299834 | None:intergenic |
| TTGATGCAGTCCTATTTCAG+TGG | 0.526839 | 1_1:-7300259 | Msa0004830:intron |
| CATAGTTTGATAATGGCTGC+TGG | 0.527380 | 1_1:+7299632 | None:intergenic |
| TAGCTGGATTAAACCACCTA+AGG | 0.527680 | 1_1:-7300843 | Msa0004830:intron |
| GCATGAGTTCCCTCAAATCC+AGG | 0.528859 | 1_1:+7300908 | None:intergenic |
| AGACTCGTACTTTGGAGGAA+TGG | 0.532082 | 1_1:+7300355 | None:intergenic |
| TATAACTCTGCATTGAGACT+GGG | 0.532253 | 1_1:+7301918 | None:intergenic |
| AGAGAAGACTCGTACTTTGG+AGG | 0.538641 | 1_1:+7300350 | None:intergenic |
| ACTGTATCATAGTTTGATAA+TGG | 0.546801 | 1_1:+7299625 | None:intergenic |
| GACGAGGGATTACCTTGTTG+GGG | 0.547183 | 1_1:+7299481 | None:intergenic |
| ACAAGGATGATATCTTTGCT+TGG | 0.550411 | 1_1:+7300969 | None:intergenic |
| CTGACTTGGCCCTCCCATGT+TGG | 0.550437 | 1_1:+7302210 | None:intergenic |
| AGTTGACAGAAATTCTTGGT+TGG | 0.553134 | 1_1:-7302134 | Msa0004830:intron |
| GCCTGTTGAAGATGGGGATG+TGG | 0.558484 | 1_1:-7300184 | Msa0004830:CDS |
| TCACACAGCCGGAGGTCAGA+TGG | 0.558835 | 1_1:-7299827 | Msa0004830:CDS |
| GGAGGAATGGAAGATATTCG+TGG | 0.560244 | 1_1:+7300368 | None:intergenic |
| AATGCAGAGTTATAGAGAGA+AGG | 0.560735 | 1_1:-7301909 | Msa0004830:CDS |
| GAATTCAGCCCAACTTGTGA+AGG | 0.561325 | 1_1:+7301004 | None:intergenic |
| GATCTCAGCCACTTCCAACA+TGG | 0.561348 | 1_1:-7302224 | Msa0004830:CDS |
| TGAAGATGGGGATGTGGGAG+CGG | 0.563372 | 1_1:-7300178 | Msa0004830:CDS |
| CAGAAAATATCACACTGACT+TGG | 0.563490 | 1_1:+7302196 | None:intergenic |
| CGTCAACTATGTCTACTCAA+TGG | 0.565260 | 1_1:-7299804 | Msa0004830:CDS |
| AGCTTCTCCTTGAGGCAACA+AGG | 0.565922 | 1_1:+7300952 | None:intergenic |
| GGAGCGGATACATTATCTCC+TGG | 0.567885 | 1_1:-7300162 | Msa0004830:CDS |
| ACTTGATTAAAGGGATTAGG+AGG | 0.568417 | 1_1:+7299901 | None:intergenic |
| GGTTAGGTTATTCTTATCTG+AGG | 0.568521 | 1_1:-7301032 | Msa0004830:CDS |
| CTAATAACTGGAATTTCGGA+CGG | 0.568918 | 1_1:+7300863 | None:intergenic |
| TCGTTAATTTGCCCAACAAG+AGG | 0.569074 | 1_1:+7301880 | None:intergenic |
| TATTGCTGCTACTCCTGTTG+AGG | 0.569271 | 1_1:-7299755 | Msa0004830:CDS |
| TTAATAGTTCCAGAGGATGT+CGG | 0.569456 | 1_1:-7299546 | Msa0004830:CDS |
| TGTCTACTCAATGGCATCGT+AGG | 0.571059 | 1_1:-7299795 | Msa0004830:CDS |
| GCTGGTGCTTGCAGAAGTAT+CGG | 0.571164 | 1_1:-7302163 | Msa0004830:CDS |
| AGTATTTGATGAGGATGTAG+TGG | 0.572858 | 1_1:+7299873 | None:intergenic |
| GATATTTGATCAACATCAGA+GGG | 0.578943 | 1_1:-7300417 | Msa0004830:CDS |
| AGGATGATATCTTTGCTTGG+AGG | 0.580593 | 1_1:+7300972 | None:intergenic |
| ATATCATCCTTGTTGCCTCA+AGG | 0.583248 | 1_1:-7300959 | Msa0004830:CDS |
| TCTTCCTATACTCACACAGC+CGG | 0.583250 | 1_1:-7299838 | Msa0004830:CDS |
| TGATATATCTTATGCAAGAG+AGG | 0.585763 | 1_1:+7304226 | None:intergenic |
| CACTGTCACGACTATGTCGA+TGG | 0.587970 | 1_1:-7300121 | Msa0004830:CDS |
| AATTTGCCCAACAAGAGGAT+CGG | 0.592689 | 1_1:+7301885 | None:intergenic |
| TGAACTATGCATCCCTGACG+AGG | 0.599293 | 1_1:+7299465 | None:intergenic |
| AAGAGCTTGATTCAGCAACA+TGG | 0.600253 | 1_1:-7299703 | Msa0004830:CDS |
| CTGGTTCTGGCGATTACTGG+AGG | 0.602943 | 1_1:+7299651 | None:intergenic |
| TCAGAACCAGCTTCTCCTTG+AGG | 0.604428 | 1_1:+7300944 | None:intergenic |
| AGTTCCAGAGGATGTCGGAA+TGG | 0.612631 | 1_1:-7299541 | Msa0004830:CDS |
| ATAACTCTGCATTGAGACTG+GGG | 0.614438 | 1_1:+7301919 | None:intergenic |
| AGTTGACGCCATCTGACCTC+CGG | 0.616959 | 1_1:+7299819 | None:intergenic |
| TACCTGACAAAGATCTAACT+CGG | 0.627396 | 1_1:+7304108 | None:intergenic |
| CAGCCACTTCCAACATGGGA+GGG | 0.629186 | 1_1:-7302219 | Msa0004830:CDS |
| TTTGAACCATCCAATATACC+AGG | 0.631062 | 1_1:+7300144 | None:intergenic |
| GAACTATGCATCCCTGACGA+GGG | 0.631209 | 1_1:+7299466 | None:intergenic |
| TGACAAAGATCTAACTCGGA+AGG | 0.633363 | 1_1:+7304112 | None:intergenic |
| CCTGTTGAAGATGGGGATGT+GGG | 0.634741 | 1_1:-7300183 | Msa0004830:CDS |
| GCTAGATCTCACATGGCAAG+TGG | 0.640415 | 1_1:-7300462 | Msa0004830:CDS |
| AAATGATGCATCATGCTGAA+AGG | 0.642980 | 1_1:+7299507 | None:intergenic |
| TCAGCCACTTCCAACATGGG+AGG | 0.643487 | 1_1:-7302220 | Msa0004830:CDS |
| GCATCATTTCAGCCCCAACA+AGG | 0.644422 | 1_1:-7299493 | Msa0004830:CDS |
| AGATATTTGATCAACATCAG+AGG | 0.644462 | 1_1:-7300418 | Msa0004830:CDS |
| AGATCTCACATGGCAAGTGG+TGG | 0.645516 | 1_1:-7300459 | Msa0004830:CDS |
| TCCTATACTCACACAGCCGG+AGG | 0.650386 | 1_1:-7299835 | Msa0004830:CDS |
| AGATCGTGCTAGATCTCACA+TGG | 0.650447 | 1_1:-7300469 | Msa0004830:CDS |
| TTAGTGAAGAGCAGTGAACA+TGG | 0.653142 | 1_1:-7300060 | Msa0004830:CDS |
| AACAAGGTAATCCCTCGTCA+GGG | 0.664383 | 1_1:-7299477 | Msa0004830:CDS |
| GATTACGCCTGTTGAAGATG+GGG | 0.664481 | 1_1:-7300190 | Msa0004830:CDS |
| GCACAGTATGCACAAAACAC+CGG | 0.673863 | 1_1:-7299949 | Msa0004830:CDS |
| TGTGTGAGTATAGGAAGAAG+TGG | 0.682691 | 1_1:+7299843 | None:intergenic |
| TAACTCTGCATTGAGACTGG+GGG | 0.693132 | 1_1:+7301920 | None:intergenic |
| GGTGCTTGCAGAAGTATCGG+AGG | 0.700785 | 1_1:-7302160 | Msa0004830:CDS |
| GCGGTGTGTGAAAATATGCG+TGG | 0.706081 | 1_1:-7304163 | Msa0004830:exon |
| AGCTTGATTCAGCAACATGG+AGG | 0.714964 | 1_1:-7299700 | Msa0004830:CDS |
| TGAGTTCCCTCAAATCCAGG+AGG | 0.756506 | 1_1:+7300911 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAATATATGAAAAAATTA+GGG | + | chr1_1:7299643-7299662 | None:intergenic | 10.0% |
| !! | AAGAAATATATGAAAAAATT+AGG | + | chr1_1:7299644-7299663 | None:intergenic | 10.0% |
| !! | ATTATAAACTAATTCTAATA+TGG | + | chr1_1:7300597-7300616 | None:intergenic | 10.0% |
| !! | TTTCTTATTCAAATTATTAT+GGG | + | chr1_1:7301941-7301960 | None:intergenic | 10.0% |
| !! | GATAATATTAATAATATATG+TGG | + | chr1_1:7302157-7302176 | None:intergenic | 10.0% |
| !! | TTTAAAAATGAATCGATTAT+TGG | + | chr1_1:7299620-7299639 | None:intergenic | 15.0% |
| !! | TTTCTATACAATAAAATACA+TGG | + | chr1_1:7300172-7300191 | None:intergenic | 15.0% |
| !!! | TGAAACTAATGTTATTTTTT+TGG | + | chr1_1:7301052-7301071 | None:intergenic | 15.0% |
| !!! | AAAAAAATAACATTAGTTTC+AGG | - | chr1_1:7301051-7301070 | Msa0004830:intron | 15.0% |
| !! | CTTTCTTATTCAAATTATTA+TGG | + | chr1_1:7301942-7301961 | None:intergenic | 15.0% |
| !! | TAATATTTATATTTCAACGT+TGG | - | chr1_1:7302884-7302903 | Msa0004830:intron | 15.0% |
| !! | AAAAAAAGAAATATCAAACA+AGG | + | chr1_1:7303337-7303356 | None:intergenic | 15.0% |
| !!! | AGATATATCAAATACGTTTT+CGG | - | chr1_1:7299446-7299465 | Msa0004830:CDS | 20.0% |
| !!! | TAATGTACTAAAAAAGTGTA+TGG | + | chr1_1:7300069-7300088 | None:intergenic | 20.0% |
| !!! | CTTTCTGTTTTTTTTGTTTT+CGG | - | chr1_1:7300282-7300301 | Msa0004830:intron | 20.0% |
| !! | AACAAATGTCTAATCATAAA+AGG | + | chr1_1:7300696-7300715 | None:intergenic | 20.0% |
| !!! | TATGATTAGACATTTGTTAA+AGG | - | chr1_1:7300698-7300717 | Msa0004830:intron | 20.0% |
| !! | ATTGAAAAATGCAACTAAAT+TGG | + | chr1_1:7301101-7301120 | None:intergenic | 20.0% |
| !!! | GATTTCTTTATTTAAACTCA+CGG | + | chr1_1:7301271-7301290 | None:intergenic | 20.0% |
| !!! | TTTTTAAAAAGCTTGCAATT+TGG | - | chr1_1:7301669-7301688 | Msa0004830:intron | 20.0% |
| !! | TTTATGATTATTGTAGACTA+GGG | + | chr1_1:7301819-7301838 | None:intergenic | 20.0% |
| !!! | TTTTATGATTATTGTAGACT+AGG | + | chr1_1:7301820-7301839 | None:intergenic | 20.0% |
| !! | ATTATGGGTAATCATAATAA+AGG | + | chr1_1:7301926-7301945 | None:intergenic | 20.0% |
| !! | TATAACTACAAAAATACCTT+AGG | + | chr1_1:7302835-7302854 | None:intergenic | 20.0% |
| !! | TATCATAACTCGAAAAAAAA+AGG | - | chr1_1:7303100-7303119 | Msa0004830:intron | 20.0% |
| !! | AGAATATTATTGAGTAATTC+AGG | + | chr1_1:7303638-7303657 | None:intergenic | 20.0% |
| !! | GAACTATTAAAAAAGATACA+AGG | + | chr1_1:7304103-7304122 | None:intergenic | 20.0% |
| !!! | CTGTATATTCTATTGTTTTG+TGG | - | chr1_1:7299474-7299493 | Msa0004830:CDS | 25.0% |
| !!! | TATATTCTATTGTTTTGTGG+CGG | - | chr1_1:7299477-7299496 | Msa0004830:CDS | 25.0% |
| ! | AATTTACATGCAAAGCTAAA+AGG | + | chr1_1:7299733-7299752 | None:intergenic | 25.0% |
| ! | TAAGGAAGTTAAGATGTATT+TGG | - | chr1_1:7299882-7299901 | Msa0004830:CDS | 25.0% |
| ! | AAGGAAGTTAAGATGTATTT+GGG | - | chr1_1:7299883-7299902 | Msa0004830:CDS | 25.0% |
| !!! | ATTTGATGATGAATTACTTG+TGG | - | chr1_1:7299919-7299938 | Msa0004830:CDS | 25.0% |
| ! | AAATCTTATTCCACTAAGTA+GGG | + | chr1_1:7300118-7300137 | None:intergenic | 25.0% |
| !! | TTTTGAATTGAGACTTATGA+TGG | - | chr1_1:7300202-7300221 | Msa0004830:CDS | 25.0% |
| ! | TTTGAATTGAGACTTATGAT+GGG | - | chr1_1:7300203-7300222 | Msa0004830:CDS | 25.0% |
| ! | AAGAAGTTGCAATTATATTG+CGG | - | chr1_1:7300247-7300266 | Msa0004830:CDS | 25.0% |
| ! | TTAGATGGTAAATGGTTTAA+TGG | - | chr1_1:7300324-7300343 | Msa0004830:intron | 25.0% |
| ! | ATGCTGAAGATATTTATCAA+AGG | + | chr1_1:7300555-7300574 | None:intergenic | 25.0% |
| ! | TTCAAAGTAACTTCATTGAA+TGG | + | chr1_1:7300650-7300669 | None:intergenic | 25.0% |
| ! | AAAACAAGTATTATCAATGG+TGG | + | chr1_1:7300884-7300903 | None:intergenic | 25.0% |
| ! | TGGAAAACAAGTATTATCAA+TGG | + | chr1_1:7300887-7300906 | None:intergenic | 25.0% |
| !! | GTAATTGCTTATTGTTTTCT+TGG | - | chr1_1:7301009-7301028 | Msa0004830:CDS | 25.0% |
| !! | TTTGAGAATTTTTATGCTGT+TGG | - | chr1_1:7301122-7301141 | Msa0004830:intron | 25.0% |
| ! | AAGTGAAAACATCAGATATT+CGG | + | chr1_1:7301181-7301200 | None:intergenic | 25.0% |
| ! | ATCCTTACTAACAGTAATAT+CGG | + | chr1_1:7301313-7301332 | None:intergenic | 25.0% |
| !! | TACTGTTAGTAAGGATATTT+TGG | - | chr1_1:7301317-7301336 | Msa0004830:intron | 25.0% |
| !! | TGTTCTTTTTCTGTTTCAAA+AGG | - | chr1_1:7301399-7301418 | Msa0004830:intron | 25.0% |
| !!! | ATCTGTTTTCACTTTTAATC+AGG | - | chr1_1:7301700-7301719 | Msa0004830:intron | 25.0% |
| !! | TTTTAATCAGGATCTTAACT+TGG | - | chr1_1:7301712-7301731 | Msa0004830:intron | 25.0% |
| ! | TTATGATTATTGTAGACTAG+GGG | + | chr1_1:7301818-7301837 | None:intergenic | 25.0% |
| ! | TATCTCTAGTATGAATCTTA+TGG | - | chr1_1:7301876-7301895 | Msa0004830:CDS | 25.0% |
| ! | CAAAATGGCTATATTTATTC+TGG | - | chr1_1:7302034-7302053 | Msa0004830:intron | 25.0% |
| ! | ACTAAAATATGACTGAAAGA+TGG | + | chr1_1:7302230-7302249 | None:intergenic | 25.0% |
| !!! | ATCTTTCAGTCATATTTTAG+TGG | - | chr1_1:7302229-7302248 | Msa0004830:CDS | 25.0% |
| !!! | GGTGGTTACTTTTTTTTAAT+AGG | + | chr1_1:7302470-7302489 | None:intergenic | 25.0% |
| ! | GTACTTTATAATGAACATCT+GGG | + | chr1_1:7302557-7302576 | None:intergenic | 25.0% |
| ! | TGTACTTTATAATGAACATC+TGG | + | chr1_1:7302558-7302577 | None:intergenic | 25.0% |
| ! | AATATTACTGAAGATGACTA+TGG | + | chr1_1:7302871-7302890 | None:intergenic | 25.0% |
| ! | CAATAATATTCTCAACAATC+CGG | - | chr1_1:7303646-7303665 | Msa0004830:intron | 25.0% |
| !!! | AAAAACATTTGATGATGATC+CGG | + | chr1_1:7303732-7303751 | None:intergenic | 25.0% |
| !! | AGTTTACATCTTTTGTTGAA+GGG | + | chr1_1:7303931-7303950 | None:intergenic | 25.0% |
| !! | TAGTTTACATCTTTTGTTGA+AGG | + | chr1_1:7303932-7303951 | None:intergenic | 25.0% |
| ! | ACTGTATCATAGTTTGATAA+TGG | + | chr1_1:7304037-7304056 | None:intergenic | 25.0% |
| !!! | ATCTTTTTTAATAGTTCCAG+AGG | - | chr1_1:7304106-7304125 | Msa0004830:intron | 25.0% |
| ! | TAGTTCAAAGAGAATGAAAA+TGG | - | chr1_1:7304210-7304229 | Msa0004830:five_prime_UTR | 25.0% |
| TGATATATCTTATGCAAGAG+AGG | + | chr1_1:7299436-7299455 | None:intergenic | 30.0% | |
| CGATTATTGGAAGTGATTAT+TGG | + | chr1_1:7299607-7299626 | None:intergenic | 30.0% | |
| GATTAGATGATTGATGAAGT+TGG | + | chr1_1:7299676-7299695 | None:intergenic | 30.0% | |
| ! | TTAATCAGGAAATTTTCCTC+TGG | + | chr1_1:7299700-7299719 | None:intergenic | 30.0% |
| AATTTCCTGATTAATCCGAT+CGG | - | chr1_1:7299706-7299725 | Msa0004830:CDS | 30.0% | |
| !! | TTAGCTTTGCATGTAAATTC+AGG | - | chr1_1:7299734-7299753 | Msa0004830:CDS | 30.0% |
| AAAAGTAGACTACACTGATA+AGG | - | chr1_1:7299864-7299883 | Msa0004830:CDS | 30.0% | |
| ! | AGTTAAGATGTATTTGGGAT+TGG | - | chr1_1:7299888-7299907 | Msa0004830:CDS | 30.0% |
| CAAATCTTATTCCACTAAGT+AGG | + | chr1_1:7300119-7300138 | None:intergenic | 30.0% | |
| CTACTTAGTGGAATAAGATT+TGG | - | chr1_1:7300117-7300136 | Msa0004830:CDS | 30.0% | |
| !!! | TCTGTTTTTTTTGTTTTCGG+TGG | - | chr1_1:7300285-7300304 | Msa0004830:intron | 30.0% |
| ! | GTTCATTGGATTAGATTAGA+TGG | - | chr1_1:7300309-7300328 | Msa0004830:intron | 30.0% |
| GGATTAGATTAGATGGTAAA+TGG | - | chr1_1:7300316-7300335 | Msa0004830:intron | 30.0% | |
| TTGTAGGTTATAAGTGTGTT+TGG | - | chr1_1:7300383-7300402 | Msa0004830:CDS | 30.0% | |
| CAGCATATATGCAAAAATGT+AGG | - | chr1_1:7300569-7300588 | Msa0004830:intron | 30.0% | |
| ! | TTGTCAAATATTGGCTATGA+CGG | - | chr1_1:7300743-7300762 | Msa0004830:intron | 30.0% |
| !! | ACTTGTTTTCCATTTCTTCT+TGG | - | chr1_1:7300895-7300914 | Msa0004830:CDS | 30.0% |
| TTGTATTATCACTATGTACG+TGG | - | chr1_1:7300954-7300973 | Msa0004830:CDS | 30.0% | |
| AGCAATTACTTTACTAGAAC+AGG | + | chr1_1:7300998-7301017 | None:intergenic | 30.0% | |
| AAATGCAACTAAATTGGACA+GGG | + | chr1_1:7301095-7301114 | None:intergenic | 30.0% | |
| AAAATGCAACTAAATTGGAC+AGG | + | chr1_1:7301096-7301115 | None:intergenic | 30.0% | |
| AGTGAAAACATCAGATATTC+GGG | + | chr1_1:7301180-7301199 | None:intergenic | 30.0% | |
| GAATTCGTATGAACAAAACA+AGG | + | chr1_1:7301204-7301223 | None:intergenic | 30.0% | |
| TAATATCGGCGAAAACAAAA+GGG | + | chr1_1:7301299-7301318 | None:intergenic | 30.0% | |
| GTAAAGTTGACAGAAATTCT+TGG | - | chr1_1:7301521-7301540 | Msa0004830:intron | 30.0% | |
| ! | GTTGTCTGAAGTGAATTAAT+TGG | + | chr1_1:7301555-7301574 | None:intergenic | 30.0% |
| GATTCATACTAGAGATACTT+AGG | + | chr1_1:7301873-7301892 | None:intergenic | 30.0% | |
| TCTAGTATGAATCTTATGGA+TGG | - | chr1_1:7301880-7301899 | Msa0004830:CDS | 30.0% | |
| !!! | CTCTGAAGTATGAATGTTTT+TGG | - | chr1_1:7301989-7302008 | Msa0004830:intron | 30.0% |
| CATTTATTGTGCACTCAAAA+TGG | - | chr1_1:7302019-7302038 | Msa0004830:intron | 30.0% | |
| !! | ACAAAGAAATAAACGGGTTT+TGG | + | chr1_1:7302348-7302367 | None:intergenic | 30.0% |
| TCACAGCACAAAGAAATAAA+CGG | + | chr1_1:7302355-7302374 | None:intergenic | 30.0% | |
| !! | CATATTACAAGAGTGCTAAA+AGG | - | chr1_1:7302576-7302595 | Msa0004830:intron | 30.0% |
| AACTACAAAAATACCTTAGG+TGG | + | chr1_1:7302832-7302851 | None:intergenic | 30.0% | |
| TGTCAAACCTATGTATATAG+CGG | - | chr1_1:7302968-7302987 | Msa0004830:intron | 30.0% | |
| GAAAAAACCGCTATATACAT+AGG | + | chr1_1:7302978-7302997 | None:intergenic | 30.0% | |
| ACAGTATGCCAATATATCAT+CGG | - | chr1_1:7303026-7303045 | Msa0004830:intron | 30.0% | |
| AGATATTTGATCAACATCAG+AGG | - | chr1_1:7303241-7303260 | Msa0004830:intron | 30.0% | |
| GATATTTGATCAACATCAGA+GGG | - | chr1_1:7303242-7303261 | Msa0004830:intron | 30.0% | |
| AACATGACCATCAATGTAAT+GGG | + | chr1_1:7303438-7303457 | None:intergenic | 30.0% | |
| TACATTATCTCCTGGTATAT+TGG | - | chr1_1:7303505-7303524 | Msa0004830:intron | 30.0% | |
| TCAACTTGATTAAAGGGATT+AGG | + | chr1_1:7303764-7303783 | None:intergenic | 30.0% | |
| !! | GGATGAAAAAGTATTTGATG+AGG | + | chr1_1:7303798-7303817 | None:intergenic | 30.0% |
| !!! | GTACACAATTTTAGAGCAAA+AGG | - | chr1_1:7304055-7304074 | Msa0004830:intron | 30.0% |
| GAAAATCGAAGAGAGTTTCA+TGG | - | chr1_1:7299524-7299543 | Msa0004830:CDS | 35.0% | |
| TACCTGACAAAGATCTAACT+CGG | + | chr1_1:7299554-7299573 | None:intergenic | 35.0% | |
| ATCAATCATCTAATCTCCAG+AGG | - | chr1_1:7299681-7299700 | Msa0004830:CDS | 35.0% | |
| GAATTTGAATCTCCCTAATG+AGG | - | chr1_1:7299941-7299960 | Msa0004830:CDS | 35.0% | |
| TCCCTAATGAGGATTTATCT+GGG | - | chr1_1:7299952-7299971 | Msa0004830:CDS | 35.0% | |
| ACCCAGATAAATCCTCATTA+GGG | + | chr1_1:7299956-7299975 | None:intergenic | 35.0% | |
| AACCCAGATAAATCCTCATT+AGG | + | chr1_1:7299957-7299976 | None:intergenic | 35.0% | |
| TAATGAGGATTTATCTGGGT+TGG | - | chr1_1:7299956-7299975 | Msa0004830:CDS | 35.0% | |
| CTTAGTGGAATAAGATTTGG+TGG | - | chr1_1:7300120-7300139 | Msa0004830:CDS | 35.0% | |
| TTGCAACTTCTTGAAAGACT+AGG | + | chr1_1:7300239-7300258 | None:intergenic | 35.0% | |
| ACAAAAATATAGCGCGTGTT+TGG | + | chr1_1:7300512-7300531 | None:intergenic | 35.0% | |
| TAAAGGTTTGCCACAATATC+AGG | - | chr1_1:7300715-7300734 | Msa0004830:intron | 35.0% | |
| CTGTCAAAAATTGGCTATGA+TGG | + | chr1_1:7300804-7300823 | None:intergenic | 35.0% | |
| ! | CATAGCCAATTTTTGACAGA+TGG | - | chr1_1:7300805-7300824 | Msa0004830:intron | 35.0% |
| ! | CAAGTATTATCAATGGTGGA+TGG | + | chr1_1:7300880-7300899 | None:intergenic | 35.0% |
| AAGAACACACCAAGAAGAAA+TGG | + | chr1_1:7300907-7300926 | None:intergenic | 35.0% | |
| ACTTGAAAACACACTAACAC+CGG | + | chr1_1:7301245-7301264 | None:intergenic | 35.0% | |
| GTAATATCGGCGAAAACAAA+AGG | + | chr1_1:7301300-7301319 | None:intergenic | 35.0% | |
| !!! | TTTTGGTGTTCAAACAGTCT+TGG | - | chr1_1:7301334-7301353 | Msa0004830:intron | 35.0% |
| ! | CAGAAAATATCACACTGACT+TGG | + | chr1_1:7301466-7301485 | None:intergenic | 35.0% |
| ! | CAAGTCAGTGTGATATTTTC+TGG | - | chr1_1:7301464-7301483 | Msa0004830:intron | 35.0% |
| AGTTGACAGAAATTCTTGGT+TGG | - | chr1_1:7301525-7301544 | Msa0004830:intron | 35.0% | |
| GGCTGAATATAAGTTGCAAT+TGG | - | chr1_1:7301589-7301608 | Msa0004830:intron | 35.0% | |
| TATAACTCTGCATTGAGACT+GGG | + | chr1_1:7301744-7301763 | None:intergenic | 35.0% | |
| AATGCAGAGTTATAGAGAGA+AGG | - | chr1_1:7301750-7301769 | Msa0004830:intron | 35.0% | |
| ATGCAGAGTTATAGAGAGAA+GGG | - | chr1_1:7301751-7301770 | Msa0004830:intron | 35.0% | |
| ATACTAGAGATACTTAGGCT+AGG | + | chr1_1:7301868-7301887 | None:intergenic | 35.0% | |
| CACAGCACAAAGAAATAAAC+GGG | + | chr1_1:7302354-7302373 | None:intergenic | 35.0% | |
| ! | CTGTTTCCTTTTTGTTGAAC+AGG | - | chr1_1:7302606-7302625 | Msa0004830:intron | 35.0% |
| ! | TCCTTTTTGTTGAACAGGTT+AGG | - | chr1_1:7302611-7302630 | Msa0004830:intron | 35.0% |
| ACCTAACCTGTTCAACAAAA+AGG | + | chr1_1:7302615-7302634 | None:intergenic | 35.0% | |
| GGTTAGGTTATTCTTATCTG+AGG | - | chr1_1:7302627-7302646 | Msa0004830:intron | 35.0% | |
| ACAAGGATGATATCTTTGCT+TGG | + | chr1_1:7302693-7302712 | None:intergenic | 35.0% | |
| ! | TCTGATGATATTTTACCTCC+TGG | - | chr1_1:7302733-7302752 | Msa0004830:intron | 35.0% |
| ! | TATTTTACCTCCTGGATTTG+AGG | - | chr1_1:7302741-7302760 | Msa0004830:intron | 35.0% |
| ! | ATTTTACCTCCTGGATTTGA+GGG | - | chr1_1:7302742-7302761 | Msa0004830:intron | 35.0% |
| CTAATAACTGGAATTTCGGA+CGG | + | chr1_1:7302799-7302818 | None:intergenic | 35.0% | |
| CCAGCTAATAACTGGAATTT+CGG | + | chr1_1:7302803-7302822 | None:intergenic | 35.0% | |
| GGTTTAATCCAGCTAATAAC+TGG | + | chr1_1:7302811-7302830 | None:intergenic | 35.0% | |
| CAGTATGCCAATATATCATC+GGG | - | chr1_1:7303027-7303046 | Msa0004830:intron | 35.0% | |
| AGTATGCCAATATATCATCG+GGG | - | chr1_1:7303028-7303047 | Msa0004830:intron | 35.0% | |
| TACATACCCCGATGATATAT+TGG | + | chr1_1:7303037-7303056 | None:intergenic | 35.0% | |
| TTCGTGGATAAATAGCTTCA+AGG | + | chr1_1:7303278-7303297 | None:intergenic | 35.0% | |
| CAACATGACCATCAATGTAA+TGG | + | chr1_1:7303439-7303458 | None:intergenic | 35.0% | |
| TTATCTCCTGGTATATTGGA+TGG | - | chr1_1:7303509-7303528 | Msa0004830:intron | 35.0% | |
| TTTGAACCATCCAATATACC+AGG | + | chr1_1:7303518-7303537 | None:intergenic | 35.0% | |
| ACTTGATTAAAGGGATTAGG+AGG | + | chr1_1:7303761-7303780 | None:intergenic | 35.0% | |
| GTGGTCTCAACTTGATTAAA+GGG | + | chr1_1:7303770-7303789 | None:intergenic | 35.0% | |
| AGTGGTCTCAACTTGATTAA+AGG | + | chr1_1:7303771-7303790 | None:intergenic | 35.0% | |
| AGTATTTGATGAGGATGTAG+TGG | + | chr1_1:7303789-7303808 | None:intergenic | 35.0% | |
| !! | ATACAAGGCTTCGTTGTTTT+TGG | + | chr1_1:7304088-7304107 | None:intergenic | 35.0% |
| TTAATAGTTCCAGAGGATGT+CGG | - | chr1_1:7304113-7304132 | Msa0004830:CDS | 35.0% | |
| AAATGATGCATCATGCTGAA+AGG | + | chr1_1:7304155-7304174 | None:intergenic | 35.0% | |
| TGACAAAGATCTAACTCGGA+AGG | + | chr1_1:7299550-7299569 | None:intergenic | 40.0% | |
| TTCCGAGTTAGATCTTTGTC+AGG | - | chr1_1:7299549-7299568 | Msa0004830:CDS | 40.0% | |
| CTCCCTAATGAGGATTTATC+TGG | - | chr1_1:7299951-7299970 | Msa0004830:CDS | 40.0% | |
| GTCTTGTGCTGTGTAATCTT+TGG | - | chr1_1:7299998-7300017 | Msa0004830:CDS | 40.0% | |
| CTTATTCCACTAAGTAGGGT+CGG | + | chr1_1:7300114-7300133 | None:intergenic | 40.0% | |
| ! | TTGTTTTCGGTGGTGTTCAT+TGG | - | chr1_1:7300295-7300314 | Msa0004830:intron | 40.0% |
| AGTGTAATATAGCGCGTGTT+TGG | + | chr1_1:7300461-7300480 | None:intergenic | 40.0% | |
| ! | CAGGCACTGTTGTCAAATAT+TGG | - | chr1_1:7300734-7300753 | Msa0004830:intron | 40.0% |
| TGGTTGTCAAAAAATGCGCA+CGG | + | chr1_1:7300784-7300803 | None:intergenic | 40.0% | |
| ! | AGCCAATTTTTGACAGATGG+AGG | - | chr1_1:7300808-7300827 | Msa0004830:intron | 40.0% |
| CTCCTCCATCTGTCAAAAAT+TGG | + | chr1_1:7300813-7300832 | None:intergenic | 40.0% | |
| AAATCTGCGACAAAACACCA+CGG | + | chr1_1:7300836-7300855 | None:intergenic | 40.0% | |
| !! | GTATTATCAATGGTGGATGG+TGG | + | chr1_1:7300877-7300896 | None:intergenic | 40.0% |
| ! | TTCTTCTTGGTGTGTTCTTG+TGG | - | chr1_1:7300908-7300927 | Msa0004830:CDS | 40.0% |
| TGTTCTTGTGGTTGTTAACC+AGG | - | chr1_1:7300920-7300939 | Msa0004830:CDS | 40.0% | |
| CTGTTGCTCATGTGTTATAC+CGG | - | chr1_1:7301223-7301242 | Msa0004830:intron | 40.0% | |
| CGCCGATATTACTGTTAGTA+AGG | - | chr1_1:7301308-7301327 | Msa0004830:intron | 40.0% | |
| !! | ATTTTCTGGAGATGTATCGC+TGG | - | chr1_1:7301478-7301497 | Msa0004830:intron | 40.0% |
| ATATTCAGCCACACTATGAC+AGG | + | chr1_1:7301579-7301598 | None:intergenic | 40.0% | |
| ! | TGGTCTTTGTTGTCTAACAC+TGG | - | chr1_1:7301609-7301628 | Msa0004830:intron | 40.0% |
| ! | GGTCTTTGTTGTCTAACACT+GGG | - | chr1_1:7301610-7301629 | Msa0004830:intron | 40.0% |
| ! | TTTGTTGTCTAACACTGGGA+TGG | - | chr1_1:7301614-7301633 | Msa0004830:intron | 40.0% |
| ATAACTCTGCATTGAGACTG+GGG | + | chr1_1:7301743-7301762 | None:intergenic | 40.0% | |
| CTATAACTCTGCATTGAGAC+TGG | + | chr1_1:7301745-7301764 | None:intergenic | 40.0% | |
| AATTTGCCCAACAAGAGGAT+CGG | + | chr1_1:7301777-7301796 | None:intergenic | 40.0% | |
| !! | TCGTTAATTTGCCCAACAAG+AGG | + | chr1_1:7301782-7301801 | None:intergenic | 40.0% |
| !!! | AAACGGGTTTTGGATGAAAG+TGG | + | chr1_1:7302338-7302357 | None:intergenic | 40.0% |
| ! | CTTTGTGCTGTGAGTTTTTG+TGG | - | chr1_1:7302362-7302381 | Msa0004830:intron | 40.0% |
| TAGATTCTCAAGTGCATGCA+TGG | + | chr1_1:7302491-7302510 | None:intergenic | 40.0% | |
| AGGAATCTCCTTCACAAGTT+GGG | - | chr1_1:7302647-7302666 | Msa0004830:intron | 40.0% | |
| AGGATGATATCTTTGCTTGG+AGG | + | chr1_1:7302690-7302709 | None:intergenic | 40.0% | |
| ATATCATCCTTGTTGCCTCA+AGG | - | chr1_1:7302700-7302719 | Msa0004830:intron | 40.0% | |
| CCGAAATTCCAGTTATTAGC+TGG | - | chr1_1:7302800-7302819 | Msa0004830:intron | 40.0% | |
| TAGCTGGATTAAACCACCTA+AGG | - | chr1_1:7302816-7302835 | Msa0004830:intron | 40.0% | |
| ACGTTGGTGCAAGAAAGTAA+AGG | - | chr1_1:7302900-7302919 | Msa0004830:intron | 40.0% | |
| TCATCGGGGTATGTATTTCT+AGG | - | chr1_1:7303042-7303061 | Msa0004830:intron | 40.0% | |
| CTGAAATAGGACTGCATCAA+AGG | + | chr1_1:7303400-7303419 | None:intergenic | 40.0% | |
| TTGATGCAGTCCTATTTCAG+TGG | - | chr1_1:7303400-7303419 | Msa0004830:intron | 40.0% | |
| TCGTCAACATCCACTGAAAT+AGG | + | chr1_1:7303413-7303432 | None:intergenic | 40.0% | |
| GACGATTCCCATTACATTGA+TGG | - | chr1_1:7303428-7303447 | Msa0004830:intron | 40.0% | |
| TTAGTGAAGAGCAGTGAACA+TGG | - | chr1_1:7303599-7303618 | Msa0004830:intron | 40.0% | |
| ACCAACTTCTCAATCACTTC+CGG | + | chr1_1:7303668-7303687 | None:intergenic | 40.0% | |
| TGTGTGAGTATAGGAAGAAG+TGG | + | chr1_1:7303819-7303838 | None:intergenic | 40.0% | |
| CGTCAACTATGTCTACTCAA+TGG | - | chr1_1:7303855-7303874 | Msa0004830:intron | 40.0% | |
| AAGAGCTTGATTCAGCAACA+TGG | - | chr1_1:7303956-7303975 | Msa0004830:intron | 40.0% | |
| !! | CATAGTTTGATAATGGCTGC+TGG | + | chr1_1:7304030-7304049 | None:intergenic | 40.0% |
| AAGGTCCGATCGGATTAATC+AGG | + | chr1_1:7299714-7299733 | None:intergenic | 45.0% | |
| GCAAAGCTAAAAGGTCCGAT+CGG | + | chr1_1:7299724-7299743 | None:intergenic | 45.0% | |
| GTATGAGCTACTGCTCTTGT+AGG | - | chr1_1:7300367-7300386 | Msa0004830:CDS | 45.0% | |
| GACAACAGTGCCTGATATTG+TGG | + | chr1_1:7300728-7300747 | None:intergenic | 45.0% | |
| AATACAAAGCACAAGCAGCC+TGG | + | chr1_1:7300941-7300960 | None:intergenic | 45.0% | |
| !! | TTTCAGGTTCCAACGTCATG+TGG | - | chr1_1:7301067-7301086 | Msa0004830:intron | 45.0% |
| ! | CAGATATTCGGGTTATGCAG+AGG | + | chr1_1:7301169-7301188 | None:intergenic | 45.0% |
| ATCTCAGCCACTTCCAACAT+GGG | - | chr1_1:7301436-7301455 | Msa0004830:intron | 45.0% | |
| AGACAACACCTGTCATAGTG+TGG | - | chr1_1:7301568-7301587 | Msa0004830:intron | 45.0% | |
| AAGGTCTCGGGATCTGATTA+GGG | - | chr1_1:7301644-7301663 | Msa0004830:intron | 45.0% | |
| TAACTCTGCATTGAGACTGG+GGG | + | chr1_1:7301742-7301761 | None:intergenic | 45.0% | |
| ! | AGCACAAAGAGTGCAAGGAA+AGG | + | chr1_1:7302414-7302433 | None:intergenic | 45.0% |
| TTCCTTGCACTCTTTGTGCT+TGG | - | chr1_1:7302414-7302433 | Msa0004830:intron | 45.0% | |
| ! | AACCAAGCACAAAGAGTGCA+AGG | + | chr1_1:7302419-7302438 | None:intergenic | 45.0% |
| TGCACTCTTTGTGCTTGGTT+AGG | - | chr1_1:7302419-7302438 | Msa0004830:intron | 45.0% | |
| ATTCTCAAGTGCATGCATGG+TGG | + | chr1_1:7302488-7302507 | None:intergenic | 45.0% | |
| GAGGAATCTCCTTCACAAGT+TGG | - | chr1_1:7302646-7302665 | Msa0004830:intron | 45.0% | |
| GAATTCAGCCCAACTTGTGA+AGG | + | chr1_1:7302658-7302677 | None:intergenic | 45.0% | |
| AGATCGTGCTAGATCTCACA+TGG | - | chr1_1:7303190-7303209 | Msa0004830:intron | 45.0% | |
| GGAGGAATGGAAGATATTCG+TGG | + | chr1_1:7303294-7303313 | None:intergenic | 45.0% | |
| ! | AGACTCGTACTTTGGAGGAA+TGG | + | chr1_1:7303307-7303326 | None:intergenic | 45.0% |
| AGAGAAGACTCGTACTTTGG+AGG | + | chr1_1:7303312-7303331 | None:intergenic | 45.0% | |
| GCAAGAGAAGACTCGTACTT+TGG | + | chr1_1:7303315-7303334 | None:intergenic | 45.0% | |
| CATCTTCAACAGGCGTAATC+GGG | + | chr1_1:7303469-7303488 | None:intergenic | 45.0% | |
| CCATCTTCAACAGGCGTAAT+CGG | + | chr1_1:7303470-7303489 | None:intergenic | 45.0% | |
| CGATTACGCCTGTTGAAGAT+GGG | - | chr1_1:7303468-7303487 | Msa0004830:intron | 45.0% | |
| GATTACGCCTGTTGAAGATG+GGG | - | chr1_1:7303469-7303488 | Msa0004830:intron | 45.0% | |
| TCCGGAAGTGATTGAGAAGT+TGG | - | chr1_1:7303664-7303683 | Msa0004830:intron | 45.0% | |
| GCACAGTATGCACAAAACAC+CGG | - | chr1_1:7303710-7303729 | Msa0004830:intron | 45.0% | |
| TCTTCCTATACTCACACAGC+CGG | - | chr1_1:7303821-7303840 | Msa0004830:intron | 45.0% | |
| TGTCTACTCAATGGCATCGT+AGG | - | chr1_1:7303864-7303883 | Msa0004830:intron | 45.0% | |
| ! | GCAATAGCTGGACTGATTTC+AGG | + | chr1_1:7303890-7303909 | None:intergenic | 45.0% |
| TATTGCTGCTACTCCTGTTG+AGG | - | chr1_1:7303904-7303923 | Msa0004830:intron | 45.0% | |
| TTTGTTGAAGGGACCTCAAC+AGG | + | chr1_1:7303920-7303939 | None:intergenic | 45.0% | |
| AGCTTGATTCAGCAACATGG+AGG | - | chr1_1:7303959-7303978 | Msa0004830:intron | 45.0% | |
| !! | TTGATAATGGCTGCTGGTTC+TGG | + | chr1_1:7304024-7304043 | None:intergenic | 45.0% |
| TGACGAGGGATTACCTTGTT+GGG | + | chr1_1:7304182-7304201 | None:intergenic | 45.0% | |
| AACAAGGTAATCCCTCGTCA+GGG | - | chr1_1:7304182-7304201 | Msa0004830:five_prime_UTR | 45.0% | |
| !! | AAAAAAAAAAAAAAAAAAAC+TGG | - | chr1_1:7299836-7299855 | Msa0004830:CDS | 5.0% |
| !! | TTTATTTATATATATTATCT+TGG | - | chr1_1:7302444-7302463 | Msa0004830:intron | 5.0% |
| GCGGTGTGTGAAAATATGCG+TGG | - | chr1_1:7299496-7299515 | Msa0004830:CDS | 50.0% | |
| ATGTAGCCGACCCTACTTAG+TGG | - | chr1_1:7300105-7300124 | Msa0004830:CDS | 50.0% | |
| ATGCACACCAATGCCAATGC+AGG | - | chr1_1:7300434-7300453 | Msa0004830:CDS | 50.0% | |
| TGCACACCAATGCCAATGCA+GGG | - | chr1_1:7300435-7300454 | Msa0004830:CDS | 50.0% | |
| ATGCACACCAATGCCAATGC+AGG | - | chr1_1:7300434-7300453 | Msa0004830:CDS | 50.0% | |
| TGCACACCAATGCCAATGCA+GGG | - | chr1_1:7300435-7300454 | Msa0004830:CDS | 50.0% | |
| !! | GGTGGATGGTGGATCATTGT+GGG | + | chr1_1:7300866-7300885 | None:intergenic | 50.0% |
| !! | TGGTGGATGGTGGATCATTG+TGG | + | chr1_1:7300867-7300886 | None:intergenic | 50.0% |
| GATCTCAGCCACTTCCAACA+TGG | - | chr1_1:7301435-7301454 | Msa0004830:intron | 50.0% | |
| ! | GCTGGTGCTTGCAGAAGTAT+CGG | - | chr1_1:7301496-7301515 | Msa0004830:intron | 50.0% |
| TGTCTAACACTGGGATGGAG+AGG | - | chr1_1:7301619-7301638 | Msa0004830:intron | 50.0% | |
| GAAGGTCTCGGGATCTGATT+AGG | - | chr1_1:7301643-7301662 | Msa0004830:intron | 50.0% | |
| AGCTTCTCCTTGAGGCAACA+AGG | + | chr1_1:7302710-7302729 | None:intergenic | 50.0% | |
| TTGTTGCCTCAAGGAGAAGC+TGG | - | chr1_1:7302709-7302728 | Msa0004830:intron | 50.0% | |
| TCAGAACCAGCTTCTCCTTG+AGG | + | chr1_1:7302718-7302737 | None:intergenic | 50.0% | |
| TGAGTTCCCTCAAATCCAGG+AGG | + | chr1_1:7302751-7302770 | None:intergenic | 50.0% | |
| GCATGAGTTCCCTCAAATCC+AGG | + | chr1_1:7302754-7302773 | None:intergenic | 50.0% | |
| GCTAGATCTCACATGGCAAG+TGG | - | chr1_1:7303197-7303216 | Msa0004830:intron | 50.0% | |
| AGATCTCACATGGCAAGTGG+TGG | - | chr1_1:7303200-7303219 | Msa0004830:intron | 50.0% | |
| CCGATTACGCCTGTTGAAGA+TGG | - | chr1_1:7303467-7303486 | Msa0004830:intron | 50.0% | |
| CCTGTTGAAGATGGGGATGT+GGG | - | chr1_1:7303476-7303495 | Msa0004830:intron | 50.0% | |
| GGAGCGGATACATTATCTCC+TGG | - | chr1_1:7303497-7303516 | Msa0004830:intron | 50.0% | |
| CACTGTCACGACTATGTCGA+TGG | - | chr1_1:7303538-7303557 | Msa0004830:intron | 50.0% | |
| ACAGGAGTAGCAGCAATAGC+TGG | + | chr1_1:7303902-7303921 | None:intergenic | 50.0% | |
| TGGCGATTACTGGAGGAGTA+TGG | + | chr1_1:7304004-7304023 | None:intergenic | 50.0% | |
| AGTTCCAGAGGATGTCGGAA+TGG | - | chr1_1:7304118-7304137 | Msa0004830:CDS | 50.0% | |
| GCATCATTTCAGCCCCAACA+AGG | - | chr1_1:7304166-7304185 | Msa0004830:exon | 50.0% | |
| GACGAGGGATTACCTTGTTG+GGG | + | chr1_1:7304181-7304200 | None:intergenic | 50.0% | |
| CTGACGAGGGATTACCTTGT+TGG | + | chr1_1:7304183-7304202 | None:intergenic | 50.0% | |
| CAACAAGGTAATCCCTCGTC+AGG | - | chr1_1:7304181-7304200 | Msa0004830:five_prime_UTR | 50.0% | |
| GAACTATGCATCCCTGACGA+GGG | + | chr1_1:7304196-7304215 | None:intergenic | 50.0% | |
| TGAACTATGCATCCCTGACG+AGG | + | chr1_1:7304197-7304216 | None:intergenic | 50.0% | |
| ! | GTTTGGCCCTGCATTGGCAT+TGG | + | chr1_1:7300444-7300463 | None:intergenic | 55.0% |
| ! | GTTTGGCCCTGCATTGGCAT+TGG | + | chr1_1:7300444-7300463 | None:intergenic | 55.0% |
| ! | TATTGGCTATGACGGCGCCA+TGG | - | chr1_1:7300751-7300770 | Msa0004830:intron | 55.0% |
| ATGCGCACGGAAATCCTCCA+TGG | + | chr1_1:7300771-7300790 | None:intergenic | 55.0% | |
| TTTGACAGATGGAGGAGCCG+TGG | - | chr1_1:7300816-7300835 | Msa0004830:intron | 55.0% | |
| GACAGGGAACCACATGACGT+TGG | + | chr1_1:7301079-7301098 | None:intergenic | 55.0% | |
| TCAGCCACTTCCAACATGGG+AGG | - | chr1_1:7301439-7301458 | Msa0004830:intron | 55.0% | |
| CAGCCACTTCCAACATGGGA+GGG | - | chr1_1:7301440-7301459 | Msa0004830:intron | 55.0% | |
| !! | GGTGCTTGCAGAAGTATCGG+AGG | - | chr1_1:7301499-7301518 | Msa0004830:intron | 55.0% |
| ACACTGGGATGGAGAGGTGA+AGG | - | chr1_1:7301625-7301644 | Msa0004830:intron | 55.0% | |
| GGATGGAGAGGTGAAGGTCT+CGG | - | chr1_1:7301631-7301650 | Msa0004830:intron | 55.0% | |
| GATGGAGAGGTGAAGGTCTC+GGG | - | chr1_1:7301632-7301651 | Msa0004830:intron | 55.0% | |
| AGAAGGGCCGATCCTCTTGT+TGG | - | chr1_1:7301767-7301786 | Msa0004830:intron | 55.0% | |
| GAAGGGCCGATCCTCTTGTT+GGG | - | chr1_1:7301768-7301787 | Msa0004830:intron | 55.0% | |
| GCCTGTTGAAGATGGGGATG+TGG | - | chr1_1:7303475-7303494 | Msa0004830:intron | 55.0% | |
| CCCACATCCCCATCTTCAAC+AGG | + | chr1_1:7303479-7303498 | None:intergenic | 55.0% | |
| TGAAGATGGGGATGTGGGAG+CGG | - | chr1_1:7303481-7303500 | Msa0004830:intron | 55.0% | |
| TCCTATACTCACACAGCCGG+AGG | - | chr1_1:7303824-7303843 | Msa0004830:intron | 55.0% | |
| ACCTCCGGCTGTGTGAGTAT+AGG | + | chr1_1:7303828-7303847 | None:intergenic | 55.0% | |
| AGTTGACGCCATCTGACCTC+CGG | + | chr1_1:7303843-7303862 | None:intergenic | 55.0% | |
| !! | CTGGTTCTGGCGATTACTGG+AGG | + | chr1_1:7304011-7304030 | None:intergenic | 55.0% |
| !! | CTGCTGGTTCTGGCGATTAC+TGG | + | chr1_1:7304014-7304033 | None:intergenic | 55.0% |
| AGCTCCATTCCGACATCCTC+TGG | + | chr1_1:7304125-7304144 | None:intergenic | 55.0% | |
| TGGCCCTCCCATGTTGGAAG+TGG | + | chr1_1:7301446-7301465 | None:intergenic | 60.0% | |
| !! | CTGACTTGGCCCTCCCATGT+TGG | + | chr1_1:7301452-7301471 | None:intergenic | 60.0% |
| CTCACATGGCAAGTGGTGGC+TGG | - | chr1_1:7303204-7303223 | Msa0004830:intron | 60.0% | |
| TCACACAGCCGGAGGTCAGA+TGG | - | chr1_1:7303832-7303851 | Msa0004830:intron | 60.0% | |
| GCGCGTGTTTGGCCCTGCAT+TGG | + | chr1_1:7300450-7300469 | None:intergenic | 65.0% | |
| GCGCGTGTTTGGCCCTGCAT+TGG | + | chr1_1:7300450-7300469 | None:intergenic | 65.0% | |
| TGGCTATGACGGCGCCATGG+AGG | - | chr1_1:7300754-7300773 | Msa0004830:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 7299429 | 7304252 | 7299429 | ID=Msa0004830;Name=Msa0004830 |
| chr1_1 | mRNA | 7299429 | 7304252 | 7299429 | ID=Msa0004830-mRNA-1;Parent=Msa0004830;Name=Msa0004830-mRNA-1;_AED=0.07;_eAED=0.07;_QI=82|0.6|0.5|1|0.6|0.83|6|0|487 |
| chr1_1 | exon | 7299429 | 7300272 | 7299429 | ID=Msa0004830-mRNA-1:exon:2572;Parent=Msa0004830-mRNA-1 |
| chr1_1 | exon | 7300365 | 7300489 | 7300365 | ID=Msa0004830-mRNA-1:exon:2571;Parent=Msa0004830-mRNA-1 |
| chr1_1 | exon | 7300844 | 7301053 | 7300844 | ID=Msa0004830-mRNA-1:exon:2570;Parent=Msa0004830-mRNA-1 |
| chr1_1 | exon | 7301861 | 7301959 | 7301861 | ID=Msa0004830-mRNA-1:exon:2569;Parent=Msa0004830-mRNA-1 |
| chr1_1 | exon | 7302135 | 7302260 | 7302135 | ID=Msa0004830-mRNA-1:exon:2568;Parent=Msa0004830-mRNA-1 |
| chr1_1 | exon | 7304111 | 7304252 | 7304111 | ID=Msa0004830-mRNA-1:exon:2567;Parent=Msa0004830-mRNA-1 |
| chr1_1 | five_prime_UTR | 7304171 | 7304252 | 7304171 | ID=Msa0004830-mRNA-1:five_prime_utr;Parent=Msa0004830-mRNA-1 |
| chr1_1 | CDS | 7304111 | 7304170 | 7304111 | ID=Msa0004830-mRNA-1:cds;Parent=Msa0004830-mRNA-1 |
| chr1_1 | CDS | 7302135 | 7302260 | 7302135 | ID=Msa0004830-mRNA-1:cds;Parent=Msa0004830-mRNA-1 |
| chr1_1 | CDS | 7301861 | 7301959 | 7301861 | ID=Msa0004830-mRNA-1:cds;Parent=Msa0004830-mRNA-1 |
| chr1_1 | CDS | 7300844 | 7301053 | 7300844 | ID=Msa0004830-mRNA-1:cds;Parent=Msa0004830-mRNA-1 |
| chr1_1 | CDS | 7300365 | 7300489 | 7300365 | ID=Msa0004830-mRNA-1:cds;Parent=Msa0004830-mRNA-1 |
| chr1_1 | CDS | 7299429 | 7300272 | 7299429 | ID=Msa0004830-mRNA-1:cds;Parent=Msa0004830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
