Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0005340 | sp|Q9M2B4|ALFL3_ARATH | 58.278 | 151 | 41 | 3 | 2 | 152 | 121 | 249 | 3.04e-51 | 166 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0005340 | A0A072VES1 | 68.590 | 156 | 32 | 2 | 2 | 153 | 121 | 263 | 3.12e-58 | 191 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0005340 | TF | Alfin-like |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0005340 | MtrunA17_Chr1g0150821 | 68.590 | 156 | 32 | 2 | 2 | 153 | 121 | 263 | 6.02e-62 | 191 |
| Msa0005340 | MtrunA17_Chr8g0343441 | 66.013 | 153 | 35 | 3 | 2 | 153 | 120 | 256 | 2.16e-52 | 167 |
| Msa0005340 | MtrunA17_Chr2g0300241 | 57.792 | 154 | 40 | 3 | 2 | 153 | 123 | 253 | 1.09e-48 | 157 |
| Msa0005340 | MtrunA17_Chr2g0329821 | 63.816 | 152 | 37 | 4 | 2 | 152 | 116 | 250 | 1.48e-44 | 146 |
| Msa0005340 | MtrunA17_Chr4g0076771 | 53.289 | 152 | 52 | 5 | 2 | 152 | 121 | 254 | 3.29e-42 | 140 |
| Msa0005340 | MtrunA17_Chr4g0006381 | 47.712 | 153 | 53 | 4 | 1 | 153 | 117 | 242 | 2.27e-35 | 122 |
| Msa0005340 | MtrunA17_Chr7g0242511 | 45.098 | 153 | 57 | 5 | 2 | 153 | 116 | 242 | 3.53e-33 | 117 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0005340 | AT3G42790.1 | 58.278 | 151 | 41 | 3 | 2 | 152 | 121 | 249 | 3.09e-52 | 166 |
| Msa0005340 | AT5G20510.2 | 58.170 | 153 | 50 | 2 | 2 | 153 | 80 | 219 | 3.20e-52 | 165 |
| Msa0005340 | AT5G20510.1 | 58.170 | 153 | 50 | 2 | 2 | 153 | 121 | 260 | 8.22e-52 | 166 |
| Msa0005340 | AT5G26210.1 | 60.265 | 151 | 44 | 2 | 2 | 152 | 120 | 254 | 9.22e-44 | 145 |
| Msa0005340 | AT2G02470.1 | 51.974 | 152 | 58 | 4 | 2 | 153 | 120 | 256 | 3.35e-42 | 141 |
| Msa0005340 | AT2G02470.2 | 51.974 | 152 | 49 | 4 | 2 | 153 | 120 | 247 | 5.01e-42 | 140 |
| Msa0005340 | AT5G05610.2 | 46.053 | 152 | 53 | 4 | 2 | 152 | 117 | 240 | 2.21e-36 | 125 |
| Msa0005340 | AT5G05610.1 | 46.053 | 152 | 53 | 4 | 2 | 152 | 117 | 240 | 2.21e-36 | 125 |
| Msa0005340 | AT3G11200.1 | 45.695 | 151 | 58 | 4 | 2 | 152 | 119 | 245 | 3.57e-36 | 125 |
| Msa0005340 | AT3G11200.2 | 45.695 | 151 | 58 | 4 | 2 | 152 | 106 | 232 | 5.49e-36 | 124 |
| Msa0005340 | AT1G14510.1 | 46.980 | 149 | 59 | 2 | 2 | 150 | 120 | 248 | 8.98e-36 | 124 |
Find 32 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGCATTGCCATTGATAT+TGG | 0.306155 | 1_1:+7848028 | None:intergenic |
| GCTATGCAGCTGATGAGTTC+TGG | 0.348702 | 1_1:-7847919 | Msa0005340:CDS |
| ACAATCTTTGAAGCTGTTGC+AGG | 0.355548 | 1_1:-7848718 | Msa0005340:CDS |
| TTGATATGCTCAGCCCTTGC+CGG | 0.382099 | 1_1:+7847842 | None:intergenic |
| TCTTACCTTAGAGTTTGATT+TGG | 0.384520 | 1_1:+7848636 | None:intergenic |
| TTTGAAGCTGTTGCAGGGTC+TGG | 0.385521 | 1_1:-7848712 | Msa0005340:CDS |
| GCAGTGACATTTGCGAGAAA+TGG | 0.391588 | 1_1:-7847892 | Msa0005340:CDS |
| GAAATCCAAATCAAACTCTA+AGG | 0.408549 | 1_1:-7848641 | Msa0005340:CDS |
| ATTTGCGAGAAATGGTTTCA+TGG | 0.414893 | 1_1:-7847884 | Msa0005340:CDS |
| GCAACAGCTTCAAAGATTGT+TGG | 0.414898 | 1_1:+7848721 | None:intergenic |
| TAGCAAATTATTAACATCAA+TGG | 0.454579 | 1_1:+7848586 | None:intergenic |
| GTCAAAGGACGAGGAGGTTG+AGG | 0.459920 | 1_1:-7848002 | Msa0005340:CDS |
| TTATTAACATCAATGGATAG+TGG | 0.466987 | 1_1:+7848593 | None:intergenic |
| GCTCTCTTGTTGCTGCAAGC+TGG | 0.467608 | 1_1:+7847806 | None:intergenic |
| GCAGGGTCTGGTAGCAAACA+AGG | 0.540889 | 1_1:-7848700 | Msa0005340:CDS |
| CAATCTTTGAAGCTGTTGCA+GGG | 0.574674 | 1_1:-7848717 | Msa0005340:CDS |
| GTCTGGTAGCAAACAAGGAA+AGG | 0.575473 | 1_1:-7848695 | Msa0005340:CDS |
| CGTGAAGATTACTCCGGCAA+GGG | 0.576974 | 1_1:-7847855 | Msa0005340:CDS |
| GGTTGAGGATGGTGTAGGTG+TGG | 0.578977 | 1_1:-7847987 | Msa0005340:CDS |
| GAGGAGGTTGAGGATGGTGT+AGG | 0.579309 | 1_1:-7847992 | Msa0005340:CDS |
| GCGTGAAGATTACTCCGGCA+AGG | 0.589663 | 1_1:-7847856 | Msa0005340:CDS |
| GGCAATGCAAATGAAGTCAA+AGG | 0.599376 | 1_1:-7848017 | Msa0005340:CDS |
| GCAAATGAAGTCAAAGGACG+AGG | 0.610740 | 1_1:-7848011 | Msa0005340:CDS |
| GAGACTTTGTGTGGGGCATG+TGG | 0.613065 | 1_1:-7847947 | Msa0005340:CDS |
| AAGGACGAGGAGGTTGAGGA+TGG | 0.620188 | 1_1:-7847998 | Msa0005340:CDS |
| AACACGGAGAGACTTTGTGT+GGG | 0.622939 | 1_1:-7847955 | Msa0005340:CDS |
| GGATGGTGTAGGTGTGGACG+AGG | 0.628142 | 1_1:-7847981 | Msa0005340:CDS |
| GAACACGGAGAGACTTTGTG+TGG | 0.630911 | 1_1:-7847956 | Msa0005340:CDS |
| ACACGGAGAGACTTTGTGTG+GGG | 0.707279 | 1_1:-7847954 | Msa0005340:CDS |
| AATGAAGTCAAAGGACGAGG+AGG | 0.714948 | 1_1:-7848008 | Msa0005340:CDS |
| AAAATGCGTGAAGATTACTC+CGG | 0.724223 | 1_1:-7847861 | Msa0005340:CDS |
| GGTGTGGACGAGGAAGAACA+CGG | 0.729144 | 1_1:-7847971 | Msa0005340:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TACATTACATTTTTTTTAAT+TGG | + | chr1_1:7848032-7848051 | None:intergenic | 10.0% |
| !!! | AATGTAATGTAATTTTTATT+AGG | - | chr1_1:7848041-7848060 | Msa0005340:CDS | 10.0% |
| !!! | TCATATATTAATGTTTTATA+CGG | + | chr1_1:7848137-7848156 | None:intergenic | 10.0% |
| !!! | TACATTACATTTTTTTTAAT+TGG | + | chr1_1:7848032-7848051 | None:intergenic | 10.0% |
| !!! | AATGTAATGTAATTTTTATT+AGG | - | chr1_1:7848041-7848060 | Msa0005340:CDS | 10.0% |
| !!! | TCATATATTAATGTTTTATA+CGG | + | chr1_1:7848137-7848156 | None:intergenic | 10.0% |
| !!! | TTAATTTTTCATAACTAGTA+AGG | - | chr1_1:7848082-7848101 | Msa0005340:intron | 15.0% |
| !!! | TTAATTTTTCATAACTAGTA+AGG | - | chr1_1:7848082-7848101 | Msa0005340:intron | 15.0% |
| !! | TAGCAAATTATTAACATCAA+TGG | + | chr1_1:7848581-7848600 | None:intergenic | 20.0% |
| !!! | ATTGATGTTAATAATTTGCT+AGG | - | chr1_1:7848580-7848599 | Msa0005340:intron | 20.0% |
| !! | TAGCAAATTATTAACATCAA+TGG | + | chr1_1:7848581-7848600 | None:intergenic | 20.0% |
| !!! | ATTGATGTTAATAATTTGCT+AGG | - | chr1_1:7848580-7848599 | Msa0005340:intron | 20.0% |
| !! | GTAATTTTTATTAGGCAAAG+TGG | - | chr1_1:7848049-7848068 | Msa0005340:CDS | 25.0% |
| !! | TGCAGTAGGTTAATTTTATT+TGG | + | chr1_1:7848108-7848127 | None:intergenic | 25.0% |
| !!! | TTTTGGTTTTTCTGTATGAA+AGG | - | chr1_1:7848189-7848208 | Msa0005340:intron | 25.0% |
| ! | TTATTAACATCAATGGATAG+TGG | + | chr1_1:7848574-7848593 | None:intergenic | 25.0% |
| !!! | GAAAGTGAAAAGTATTTTGA+GGG | - | chr1_1:7848657-7848676 | Msa0005340:CDS | 25.0% |
| ! | GTCATTTAATCTTGATTGAA+AGG | + | chr1_1:7848740-7848759 | None:intergenic | 25.0% |
| ! | TTTATAGTTCAAGAACGTAT+CGG | - | chr1_1:7848945-7848964 | Msa0005340:intron | 25.0% |
| ! | GTTTGGTATTTAATCAGTTA+AGG | - | chr1_1:7849051-7849070 | Msa0005340:intron | 25.0% |
| !!! | GATATTGGTTTTGAAAACTT+TGG | + | chr1_1:7849124-7849143 | None:intergenic | 25.0% |
| !! | GTTTTCAAAACCAATATCAA+TGG | - | chr1_1:7849126-7849145 | Msa0005340:intron | 25.0% |
| !! | GTAATTTTTATTAGGCAAAG+TGG | - | chr1_1:7848049-7848068 | Msa0005340:CDS | 25.0% |
| !! | TGCAGTAGGTTAATTTTATT+TGG | + | chr1_1:7848108-7848127 | None:intergenic | 25.0% |
| !!! | TTTTGGTTTTTCTGTATGAA+AGG | - | chr1_1:7848189-7848208 | Msa0005340:intron | 25.0% |
| ! | TTATTAACATCAATGGATAG+TGG | + | chr1_1:7848574-7848593 | None:intergenic | 25.0% |
| !!! | GAAAGTGAAAAGTATTTTGA+GGG | - | chr1_1:7848657-7848676 | Msa0005340:CDS | 25.0% |
| ! | GTCATTTAATCTTGATTGAA+AGG | + | chr1_1:7848740-7848759 | None:intergenic | 25.0% |
| ! | TTTATAGTTCAAGAACGTAT+CGG | - | chr1_1:7848945-7848964 | Msa0005340:intron | 25.0% |
| ! | GTTTGGTATTTAATCAGTTA+AGG | - | chr1_1:7849051-7849070 | Msa0005340:intron | 25.0% |
| !!! | GATATTGGTTTTGAAAACTT+TGG | + | chr1_1:7849124-7849143 | None:intergenic | 25.0% |
| !! | GTTTTCAAAACCAATATCAA+TGG | - | chr1_1:7849126-7849145 | Msa0005340:intron | 25.0% |
| CTGAAAGGAAAGAAACAATA+AGG | + | chr1_1:7848248-7848267 | None:intergenic | 30.0% | |
| GTTTCTTTCCTTTCAGTAAA+AGG | - | chr1_1:7848252-7848271 | Msa0005340:intron | 30.0% | |
| ! | AAGATACTCCTTTTACTGAA+AGG | + | chr1_1:7848263-7848282 | None:intergenic | 30.0% |
| TCTTGCTAATACAGAGAATT+AGG | + | chr1_1:7848291-7848310 | None:intergenic | 30.0% | |
| !!! | ATTTTTTCGCCATTCATTGA+TGG | - | chr1_1:7848357-7848376 | Msa0005340:intron | 30.0% |
| GAAATCCAAATCAAACTCTA+AGG | - | chr1_1:7848523-7848542 | Msa0005340:intron | 30.0% | |
| TCTTACCTTAGAGTTTGATT+TGG | + | chr1_1:7848531-7848550 | None:intergenic | 30.0% | |
| !!! | CGAAAGTGAAAAGTATTTTG+AGG | - | chr1_1:7848656-7848675 | Msa0005340:CDS | 30.0% |
| ! | CAAATCTGAAGTCATAATGT+GGG | + | chr1_1:7848762-7848781 | None:intergenic | 30.0% |
| ! | TCAAATCTGAAGTCATAATG+TGG | + | chr1_1:7848763-7848782 | None:intergenic | 30.0% |
| GATTAAATACCAAACCAATC+AGG | + | chr1_1:7849046-7849065 | None:intergenic | 30.0% | |
| ATTTGCATTGCCATTGATAT+TGG | + | chr1_1:7849139-7849158 | None:intergenic | 30.0% | |
| CTGAAAGGAAAGAAACAATA+AGG | + | chr1_1:7848248-7848267 | None:intergenic | 30.0% | |
| GTTTCTTTCCTTTCAGTAAA+AGG | - | chr1_1:7848252-7848271 | Msa0005340:intron | 30.0% | |
| ! | AAGATACTCCTTTTACTGAA+AGG | + | chr1_1:7848263-7848282 | None:intergenic | 30.0% |
| TCTTGCTAATACAGAGAATT+AGG | + | chr1_1:7848291-7848310 | None:intergenic | 30.0% | |
| !!! | ATTTTTTCGCCATTCATTGA+TGG | - | chr1_1:7848357-7848376 | Msa0005340:intron | 30.0% |
| GAAATCCAAATCAAACTCTA+AGG | - | chr1_1:7848523-7848542 | Msa0005340:intron | 30.0% | |
| TCTTACCTTAGAGTTTGATT+TGG | + | chr1_1:7848531-7848550 | None:intergenic | 30.0% | |
| !!! | CGAAAGTGAAAAGTATTTTG+AGG | - | chr1_1:7848656-7848675 | Msa0005340:CDS | 30.0% |
| ! | CAAATCTGAAGTCATAATGT+GGG | + | chr1_1:7848762-7848781 | None:intergenic | 30.0% |
| ! | TCAAATCTGAAGTCATAATG+TGG | + | chr1_1:7848763-7848782 | None:intergenic | 30.0% |
| GATTAAATACCAAACCAATC+AGG | + | chr1_1:7849046-7849065 | None:intergenic | 30.0% | |
| ATTTGCATTGCCATTGATAT+TGG | + | chr1_1:7849139-7849158 | None:intergenic | 30.0% | |
| TTCTTGCTGAATTGAGTAGA+TGG | - | chr1_1:7847841-7847860 | Msa0005340:CDS | 35.0% | |
| CTGAATTGAGTAGATGGATA+CGG | - | chr1_1:7847847-7847866 | Msa0005340:CDS | 35.0% | |
| TTATACGGTTCATATGCAGT+AGG | + | chr1_1:7848122-7848141 | None:intergenic | 35.0% | |
| ! | ACATGCTACACATAAGCTTT+TGG | - | chr1_1:7848172-7848191 | Msa0005340:intron | 35.0% |
| !! | CAACAAACTTTTGAGAGGAA+GGG | + | chr1_1:7848320-7848339 | None:intergenic | 35.0% |
| GAAAGCAAACCATCAATGAA+TGG | + | chr1_1:7848369-7848388 | None:intergenic | 35.0% | |
| !! | CAAGATGGTAGTTAATTTGC+AGG | - | chr1_1:7848390-7848409 | Msa0005340:intron | 35.0% |
| ! | AGTCGCGTAATATGTTGTTT+AGG | - | chr1_1:7848615-7848634 | Msa0005340:CDS | 35.0% |
| CTTGACCATAAATATCCAGA+CGG | + | chr1_1:7848697-7848716 | None:intergenic | 35.0% | |
| TTGCTCCAAAAACAAGGATT+CGG | + | chr1_1:7848917-7848936 | None:intergenic | 35.0% | |
| ACTTTCTTGCTCCAAAAACA+AGG | + | chr1_1:7848923-7848942 | None:intergenic | 35.0% | |
| TGACCATATATCCCTGTTTA+TGG | - | chr1_1:7848984-7849003 | Msa0005340:intron | 35.0% | |
| ! | GTTAAGGCTGTTATCTCTTT+TGG | - | chr1_1:7849067-7849086 | Msa0005340:intron | 35.0% |
| !!! | GGTTTTGAAAACTTTGGTTG+AGG | + | chr1_1:7849118-7849137 | None:intergenic | 35.0% |
| ATTTGCGAGAAATGGTTTCA+TGG | - | chr1_1:7849280-7849299 | Msa0005340:intron | 35.0% | |
| AAAATGCGTGAAGATTACTC+CGG | - | chr1_1:7849303-7849322 | Msa0005340:intron | 35.0% | |
| TTCTTGCTGAATTGAGTAGA+TGG | - | chr1_1:7847841-7847860 | Msa0005340:CDS | 35.0% | |
| CTGAATTGAGTAGATGGATA+CGG | - | chr1_1:7847847-7847866 | Msa0005340:CDS | 35.0% | |
| TTATACGGTTCATATGCAGT+AGG | + | chr1_1:7848122-7848141 | None:intergenic | 35.0% | |
| ! | ACATGCTACACATAAGCTTT+TGG | - | chr1_1:7848172-7848191 | Msa0005340:intron | 35.0% |
| !! | CAACAAACTTTTGAGAGGAA+GGG | + | chr1_1:7848320-7848339 | None:intergenic | 35.0% |
| GAAAGCAAACCATCAATGAA+TGG | + | chr1_1:7848369-7848388 | None:intergenic | 35.0% | |
| !! | CAAGATGGTAGTTAATTTGC+AGG | - | chr1_1:7848390-7848409 | Msa0005340:intron | 35.0% |
| ! | AGTCGCGTAATATGTTGTTT+AGG | - | chr1_1:7848615-7848634 | Msa0005340:CDS | 35.0% |
| CTTGACCATAAATATCCAGA+CGG | + | chr1_1:7848697-7848716 | None:intergenic | 35.0% | |
| TTGCTCCAAAAACAAGGATT+CGG | + | chr1_1:7848917-7848936 | None:intergenic | 35.0% | |
| ACTTTCTTGCTCCAAAAACA+AGG | + | chr1_1:7848923-7848942 | None:intergenic | 35.0% | |
| TGACCATATATCCCTGTTTA+TGG | - | chr1_1:7848984-7849003 | Msa0005340:intron | 35.0% | |
| ! | GTTAAGGCTGTTATCTCTTT+TGG | - | chr1_1:7849067-7849086 | Msa0005340:intron | 35.0% |
| !!! | GGTTTTGAAAACTTTGGTTG+AGG | + | chr1_1:7849118-7849137 | None:intergenic | 35.0% |
| ATTTGCGAGAAATGGTTTCA+TGG | - | chr1_1:7849280-7849299 | Msa0005340:intron | 35.0% | |
| AAAATGCGTGAAGATTACTC+CGG | - | chr1_1:7849303-7849322 | Msa0005340:intron | 35.0% | |
| GTAGATGGATACGGAAGTTA+AGG | - | chr1_1:7847856-7847875 | Msa0005340:CDS | 40.0% | |
| ATGGATACGGAAGTTAAGGT+TGG | - | chr1_1:7847860-7847879 | Msa0005340:CDS | 40.0% | |
| TGGATACGGAAGTTAAGGTT+GGG | - | chr1_1:7847861-7847880 | Msa0005340:CDS | 40.0% | |
| !! | CCAACAAACTTTTGAGAGGA+AGG | + | chr1_1:7848321-7848340 | None:intergenic | 40.0% |
| CCTTCCTCTCAAAAGTTTGT+TGG | - | chr1_1:7848318-7848337 | Msa0005340:intron | 40.0% | |
| ! | ACTGCCAACAAACTTTTGAG+AGG | + | chr1_1:7848325-7848344 | None:intergenic | 40.0% |
| !! | GATGGTTTGCTTTCTCAAGA+TGG | - | chr1_1:7848375-7848394 | Msa0005340:intron | 40.0% |
| GCAACAGCTTCAAAGATTGT+TGG | + | chr1_1:7848446-7848465 | None:intergenic | 40.0% | |
| !! | ACAATCTTTGAAGCTGTTGC+AGG | - | chr1_1:7848446-7848465 | Msa0005340:intron | 40.0% |
| !! | CAATCTTTGAAGCTGTTGCA+GGG | - | chr1_1:7848447-7848466 | Msa0005340:intron | 40.0% |
| TGAAAGGTTATCAGAGAGTG+TGG | + | chr1_1:7848724-7848743 | None:intergenic | 40.0% | |
| !! | TAGTCTAGTTTGCTTGACTG+TGG | - | chr1_1:7848861-7848880 | Msa0005340:intron | 40.0% |
| !!! | GAGATCCGAATCCTTGTTTT+TGG | - | chr1_1:7848909-7848928 | Msa0005340:intron | 40.0% |
| ! | ACTTTCTAGCGCCATAAACA+GGG | + | chr1_1:7848998-7849017 | None:intergenic | 40.0% |
| GAATCTGTCTGTTTCCTGAT+TGG | - | chr1_1:7849029-7849048 | Msa0005340:intron | 40.0% | |
| ! | TGTCTGTTTCCTGATTGGTT+TGG | - | chr1_1:7849034-7849053 | Msa0005340:intron | 40.0% |
| GGCAATGCAAATGAAGTCAA+AGG | - | chr1_1:7849147-7849166 | Msa0005340:intron | 40.0% | |
| GTAGATGGATACGGAAGTTA+AGG | - | chr1_1:7847856-7847875 | Msa0005340:CDS | 40.0% | |
| ATGGATACGGAAGTTAAGGT+TGG | - | chr1_1:7847860-7847879 | Msa0005340:CDS | 40.0% | |
| TGGATACGGAAGTTAAGGTT+GGG | - | chr1_1:7847861-7847880 | Msa0005340:CDS | 40.0% | |
| !! | CCAACAAACTTTTGAGAGGA+AGG | + | chr1_1:7848321-7848340 | None:intergenic | 40.0% |
| CCTTCCTCTCAAAAGTTTGT+TGG | - | chr1_1:7848318-7848337 | Msa0005340:intron | 40.0% | |
| ! | ACTGCCAACAAACTTTTGAG+AGG | + | chr1_1:7848325-7848344 | None:intergenic | 40.0% |
| !! | GATGGTTTGCTTTCTCAAGA+TGG | - | chr1_1:7848375-7848394 | Msa0005340:intron | 40.0% |
| GCAACAGCTTCAAAGATTGT+TGG | + | chr1_1:7848446-7848465 | None:intergenic | 40.0% | |
| !! | ACAATCTTTGAAGCTGTTGC+AGG | - | chr1_1:7848446-7848465 | Msa0005340:intron | 40.0% |
| !! | CAATCTTTGAAGCTGTTGCA+GGG | - | chr1_1:7848447-7848466 | Msa0005340:intron | 40.0% |
| TGAAAGGTTATCAGAGAGTG+TGG | + | chr1_1:7848724-7848743 | None:intergenic | 40.0% | |
| !! | TAGTCTAGTTTGCTTGACTG+TGG | - | chr1_1:7848861-7848880 | Msa0005340:intron | 40.0% |
| !!! | GAGATCCGAATCCTTGTTTT+TGG | - | chr1_1:7848909-7848928 | Msa0005340:intron | 40.0% |
| ! | ACTTTCTAGCGCCATAAACA+GGG | + | chr1_1:7848998-7849017 | None:intergenic | 40.0% |
| GAATCTGTCTGTTTCCTGAT+TGG | - | chr1_1:7849029-7849048 | Msa0005340:intron | 40.0% | |
| ! | TGTCTGTTTCCTGATTGGTT+TGG | - | chr1_1:7849034-7849053 | Msa0005340:intron | 40.0% |
| GGCAATGCAAATGAAGTCAA+AGG | - | chr1_1:7849147-7849166 | Msa0005340:intron | 40.0% | |
| ! | CGGAAGTTAAGGTTGGGTTT+TGG | - | chr1_1:7847867-7847886 | Msa0005340:CDS | 45.0% |
| GTCTGGTAGCAAACAAGGAA+AGG | - | chr1_1:7848469-7848488 | Msa0005340:intron | 45.0% | |
| CCATAAATATCCAGACGGCA+GGG | + | chr1_1:7848692-7848711 | None:intergenic | 45.0% | |
| ACCATAAATATCCAGACGGC+AGG | + | chr1_1:7848693-7848712 | None:intergenic | 45.0% | |
| ATGTGTGAATCCTTTGCTGC+TGG | - | chr1_1:7848887-7848906 | Msa0005340:intron | 45.0% | |
| GCGCCATAAACAGGGATATA+TGG | + | chr1_1:7848990-7849009 | None:intergenic | 45.0% | |
| ! | GACTTTCTAGCGCCATAAAC+AGG | + | chr1_1:7848999-7849018 | None:intergenic | 45.0% |
| GCAAATGAAGTCAAAGGACG+AGG | - | chr1_1:7849153-7849172 | Msa0005340:intron | 45.0% | |
| AATGAAGTCAAAGGACGAGG+AGG | - | chr1_1:7849156-7849175 | Msa0005340:intron | 45.0% | |
| AACACGGAGAGACTTTGTGT+GGG | - | chr1_1:7849209-7849228 | Msa0005340:intron | 45.0% | |
| GCAGTGACATTTGCGAGAAA+TGG | - | chr1_1:7849272-7849291 | Msa0005340:intron | 45.0% | |
| ! | CGGAAGTTAAGGTTGGGTTT+TGG | - | chr1_1:7847867-7847886 | Msa0005340:CDS | 45.0% |
| GTCTGGTAGCAAACAAGGAA+AGG | - | chr1_1:7848469-7848488 | Msa0005340:intron | 45.0% | |
| CCATAAATATCCAGACGGCA+GGG | + | chr1_1:7848692-7848711 | None:intergenic | 45.0% | |
| ACCATAAATATCCAGACGGC+AGG | + | chr1_1:7848693-7848712 | None:intergenic | 45.0% | |
| ATGTGTGAATCCTTTGCTGC+TGG | - | chr1_1:7848887-7848906 | Msa0005340:intron | 45.0% | |
| GCGCCATAAACAGGGATATA+TGG | + | chr1_1:7848990-7849009 | None:intergenic | 45.0% | |
| ! | GACTTTCTAGCGCCATAAAC+AGG | + | chr1_1:7848999-7849018 | None:intergenic | 45.0% |
| GCAAATGAAGTCAAAGGACG+AGG | - | chr1_1:7849153-7849172 | Msa0005340:intron | 45.0% | |
| AATGAAGTCAAAGGACGAGG+AGG | - | chr1_1:7849156-7849175 | Msa0005340:intron | 45.0% | |
| AACACGGAGAGACTTTGTGT+GGG | - | chr1_1:7849209-7849228 | Msa0005340:intron | 45.0% | |
| GCAGTGACATTTGCGAGAAA+TGG | - | chr1_1:7849272-7849291 | Msa0005340:intron | 45.0% | |
| ! | TTTGAAGCTGTTGCAGGGTC+TGG | - | chr1_1:7848452-7848471 | Msa0005340:intron | 50.0% |
| GATTTAGATTCCCTGCCGTC+TGG | - | chr1_1:7848679-7848698 | Msa0005340:CDS | 50.0% | |
| CCCTGCCGTCTGGATATTTA+TGG | - | chr1_1:7848689-7848708 | Msa0005340:CDS | 50.0% | |
| ATTCGGATCTCCAGCAGCAA+AGG | + | chr1_1:7848900-7848919 | None:intergenic | 50.0% | |
| GAACACGGAGAGACTTTGTG+TGG | - | chr1_1:7849208-7849227 | Msa0005340:intron | 50.0% | |
| ACACGGAGAGACTTTGTGTG+GGG | - | chr1_1:7849210-7849229 | Msa0005340:intron | 50.0% | |
| GCTATGCAGCTGATGAGTTC+TGG | - | chr1_1:7849245-7849264 | Msa0005340:intron | 50.0% | |
| CGTGAAGATTACTCCGGCAA+GGG | - | chr1_1:7849309-7849328 | Msa0005340:intron | 50.0% | |
| TTGATATGCTCAGCCCTTGC+CGG | + | chr1_1:7849325-7849344 | None:intergenic | 50.0% | |
| ! | TTTGAAGCTGTTGCAGGGTC+TGG | - | chr1_1:7848452-7848471 | Msa0005340:intron | 50.0% |
| GATTTAGATTCCCTGCCGTC+TGG | - | chr1_1:7848679-7848698 | Msa0005340:CDS | 50.0% | |
| CCCTGCCGTCTGGATATTTA+TGG | - | chr1_1:7848689-7848708 | Msa0005340:CDS | 50.0% | |
| ATTCGGATCTCCAGCAGCAA+AGG | + | chr1_1:7848900-7848919 | None:intergenic | 50.0% | |
| GAACACGGAGAGACTTTGTG+TGG | - | chr1_1:7849208-7849227 | Msa0005340:intron | 50.0% | |
| ACACGGAGAGACTTTGTGTG+GGG | - | chr1_1:7849210-7849229 | Msa0005340:intron | 50.0% | |
| GCTATGCAGCTGATGAGTTC+TGG | - | chr1_1:7849245-7849264 | Msa0005340:intron | 50.0% | |
| CGTGAAGATTACTCCGGCAA+GGG | - | chr1_1:7849309-7849328 | Msa0005340:intron | 50.0% | |
| TTGATATGCTCAGCCCTTGC+CGG | + | chr1_1:7849325-7849344 | None:intergenic | 50.0% | |
| GCAGGGTCTGGTAGCAAACA+AGG | - | chr1_1:7848464-7848483 | Msa0005340:intron | 55.0% | |
| GTCAAAGGACGAGGAGGTTG+AGG | - | chr1_1:7849162-7849181 | Msa0005340:intron | 55.0% | |
| AAGGACGAGGAGGTTGAGGA+TGG | - | chr1_1:7849166-7849185 | Msa0005340:intron | 55.0% | |
| GAGGAGGTTGAGGATGGTGT+AGG | - | chr1_1:7849172-7849191 | Msa0005340:intron | 55.0% | |
| GGTTGAGGATGGTGTAGGTG+TGG | - | chr1_1:7849177-7849196 | Msa0005340:intron | 55.0% | |
| GGTGTGGACGAGGAAGAACA+CGG | - | chr1_1:7849193-7849212 | Msa0005340:intron | 55.0% | |
| GAGACTTTGTGTGGGGCATG+TGG | - | chr1_1:7849217-7849236 | Msa0005340:intron | 55.0% | |
| GCGTGAAGATTACTCCGGCA+AGG | - | chr1_1:7849308-7849327 | Msa0005340:intron | 55.0% | |
| GCTCTCTTGTTGCTGCAAGC+TGG | + | chr1_1:7849361-7849380 | None:intergenic | 55.0% | |
| GCAGGGTCTGGTAGCAAACA+AGG | - | chr1_1:7848464-7848483 | Msa0005340:intron | 55.0% | |
| GTCAAAGGACGAGGAGGTTG+AGG | - | chr1_1:7849162-7849181 | Msa0005340:intron | 55.0% | |
| AAGGACGAGGAGGTTGAGGA+TGG | - | chr1_1:7849166-7849185 | Msa0005340:intron | 55.0% | |
| GAGGAGGTTGAGGATGGTGT+AGG | - | chr1_1:7849172-7849191 | Msa0005340:intron | 55.0% | |
| GGTTGAGGATGGTGTAGGTG+TGG | - | chr1_1:7849177-7849196 | Msa0005340:intron | 55.0% | |
| GGTGTGGACGAGGAAGAACA+CGG | - | chr1_1:7849193-7849212 | Msa0005340:intron | 55.0% | |
| GAGACTTTGTGTGGGGCATG+TGG | - | chr1_1:7849217-7849236 | Msa0005340:intron | 55.0% | |
| GCGTGAAGATTACTCCGGCA+AGG | - | chr1_1:7849308-7849327 | Msa0005340:intron | 55.0% | |
| GCTCTCTTGTTGCTGCAAGC+TGG | + | chr1_1:7849361-7849380 | None:intergenic | 55.0% | |
| GGATGGTGTAGGTGTGGACG+AGG | - | chr1_1:7849183-7849202 | Msa0005340:intron | 60.0% | |
| GGATGGTGTAGGTGTGGACG+AGG | - | chr1_1:7849183-7849202 | Msa0005340:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 7847796 | 7849390 | 7847796 | ID=Msa0005340;Name=Msa0005340 |
| chr1_1 | mRNA | 7847796 | 7849390 | 7847796 | ID=Msa0005340-mRNA-1;Parent=Msa0005340;Name=Msa0005340-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|0.66|0.5|0.33|3|0|153 |
| chr1_1 | exon | 7849386 | 7849390 | 7849386 | ID=Msa0005340-mRNA-1:exon:2780;Parent=Msa0005340-mRNA-1 |
| chr1_1 | exon | 7848601 | 7848774 | 7848601 | ID=Msa0005340-mRNA-1:exon:2779;Parent=Msa0005340-mRNA-1 |
| chr1_1 | exon | 7847796 | 7848078 | 7847796 | ID=Msa0005340-mRNA-1:exon:2778;Parent=Msa0005340-mRNA-1 |
| chr1_1 | CDS | 7849386 | 7849390 | 7849386 | ID=Msa0005340-mRNA-1:cds;Parent=Msa0005340-mRNA-1 |
| chr1_1 | CDS | 7848601 | 7848774 | 7848601 | ID=Msa0005340-mRNA-1:cds;Parent=Msa0005340-mRNA-1 |
| chr1_1 | CDS | 7847796 | 7848078 | 7847796 | ID=Msa0005340-mRNA-1:cds;Parent=Msa0005340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
