AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0005790

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0005790 MtrunA17_Chr1g0150281 96.622 148 5 0 3 150 138 285 4.60e-108 309
Msa0005790 MtrunA17_Chr3g0136961 64.901 151 41 3 3 141 136 286 1.11e-59 186
Msa0005790 MtrunA17_Chr2g0333851 56.463 147 54 4 4 141 168 313 1.09e-46 154
Msa0005790 MtrunA17_Chr4g0001361 51.613 155 57 4 4 141 161 314 4.11e-43 144
Msa0005790 MtrunA17_Chr1g0150271 47.945 146 62 3 4 142 100 238 8.95e-38 129
Msa0005790 MtrunA17_Chr4g0060271 68.421 57 18 0 6 62 256 312 1.21e-24 98.6
Msa0005790 MtrunA17_Chr4g0051181 63.158 57 21 0 6 62 244 300 1.51e-23 95.1
Msa0005790 MtrunA17_Chr3g0099641 33.333 192 70 5 4 137 250 441 2.19e-23 94.7
Msa0005790 MtrunA17_Chr2g0288871 64.407 59 21 0 4 62 304 362 2.91e-23 94.7
Msa0005790 MtrunA17_Chr7g0216891 63.158 57 21 0 6 62 220 276 3.45e-23 94.4
Msa0005790 MtrunA17_Chr7g0270831 62.712 59 22 0 4 62 215 273 3.70e-23 94.0
Msa0005790 MtrunA17_Chr2g0322391 51.316 76 37 0 4 79 348 423 1.22e-22 92.8
Msa0005790 MtrunA17_Chr2g0302391 54.839 62 28 0 1 62 207 268 2.49e-22 91.7
Msa0005790 MtrunA17_Chr4g0075201 59.322 59 24 0 4 62 266 324 1.13e-21 90.1
Msa0005790 MtrunA17_Chr4g0025051 57.627 59 25 0 4 62 334 392 1.77e-20 86.7
Msa0005790 MtrunA17_Chr5g0445311 57.895 57 23 1 6 62 365 420 3.20e-20 85.9
Msa0005790 MtrunA17_Chr1g0194481 56.667 60 25 1 3 62 156 214 3.94e-20 84.3
Msa0005790 MtrunA17_Chr3g0101131 57.895 57 23 1 6 62 416 471 5.19e-20 85.5
Msa0005790 MtrunA17_Chr4g0051881 57.895 57 23 1 6 62 179 234 6.39e-20 84.0
Msa0005790 MtrunA17_Chr7g0270191 56.667 60 25 1 3 62 143 201 1.09e-19 82.8
Msa0005790 MtrunA17_Chr5g0443131 53.333 60 27 1 3 62 155 213 1.24e-19 82.8
Msa0005790 MtrunA17_Chr4g0025061 55.932 59 26 0 4 62 359 417 1.87e-19 84.0
Msa0005790 MtrunA17_Chr5g0401821 52.632 57 27 0 6 62 200 256 2.26e-19 81.6
Msa0005790 MtrunA17_Chr5g0418781 55.000 60 26 1 3 62 122 180 2.75e-19 81.6
Msa0005790 MtrunA17_Chr5g0447701 56.667 60 25 1 4 63 251 309 6.22e-19 81.6
Msa0005790 MtrunA17_Chr5g0432161 54.386 57 25 1 6 62 422 477 7.82e-19 82.0
Msa0005790 MtrunA17_Chr5g0432161 50.877 57 26 2 6 62 245 299 1.36e-14 69.7
Msa0005790 MtrunA17_Chr2g0294231 55.000 60 26 1 3 62 201 259 8.40e-19 81.3
Msa0005790 MtrunA17_Chr4g0053281 46.269 67 36 0 6 72 267 333 1.01e-18 80.9
Msa0005790 MtrunA17_Chr7g0263531 56.140 57 24 1 6 62 362 417 1.31e-18 81.3
Msa0005790 MtrunA17_Chr7g0263531 56.897 58 23 2 6 63 190 245 8.76e-17 75.9
Msa0005790 MtrunA17_Chr7g0228941 52.632 57 27 0 6 62 53 109 1.36e-18 76.3
Msa0005790 MtrunA17_Chr1g0147881 52.632 57 27 0 6 62 263 319 1.63e-18 80.1
Msa0005790 MtrunA17_Chr1g0184691 51.724 58 28 0 6 63 294 351 2.17e-18 80.1
Msa0005790 MtrunA17_Chr5g0418191 54.386 57 25 1 6 62 321 376 2.94e-18 80.1
Msa0005790 MtrunA17_Chr5g0418191 52.632 57 25 2 6 62 152 206 2.71e-14 68.9
Msa0005790 MtrunA17_Chr1g0188941 50.877 57 27 1 6 62 52 107 3.82e-18 75.1
Msa0005790 MtrunA17_Chr7g0238921 56.140 57 24 1 6 62 125 180 5.65e-18 78.6
Msa0005790 MtrunA17_Chr3g0106491 52.632 57 26 1 6 62 366 421 1.16e-17 78.6
Msa0005790 MtrunA17_Chr3g0106491 50.877 57 26 2 6 62 199 253 3.82e-14 68.6
Msa0005790 MtrunA17_Chr7g0218081 54.386 57 25 1 6 62 411 466 1.32e-17 78.6
Msa0005790 MtrunA17_Chr7g0218081 49.123 57 27 2 6 62 229 283 4.01e-12 62.8
Msa0005790 MtrunA17_Chr4g0042831 54.386 57 25 1 6 62 279 334 1.36e-17 78.2
Msa0005790 MtrunA17_Chr4g0042831 47.368 57 29 1 6 62 146 201 1.85e-11 60.8
Msa0005790 MtrunA17_Chr1g0150801 50.877 57 27 1 6 62 103 158 1.57e-17 74.7
Msa0005790 MtrunA17_Chr8g0379461 51.724 58 28 0 6 63 77 134 2.39e-17 75.9
Msa0005790 MtrunA17_Chr3g0129361 47.222 72 36 2 6 77 145 214 2.44e-17 75.5
Msa0005790 MtrunA17_Chr7g0224801 51.613 62 29 1 6 67 94 154 2.79e-17 74.3
Msa0005790 MtrunA17_Chr3g0139021 52.632 57 27 0 6 62 315 371 2.92e-17 77.0
Msa0005790 MtrunA17_Chr8g0383351 52.632 57 26 1 6 62 161 216 3.25e-17 75.5
Msa0005790 MtrunA17_Chr4g0071521 49.153 59 30 0 6 64 246 304 6.62e-17 75.5
Msa0005790 MtrunA17_Chr3g0079691 34.545 110 62 3 6 106 496 604 7.15e-17 76.3
Msa0005790 MtrunA17_Chr3g0079691 50.877 57 26 2 6 62 281 335 1.13e-12 64.3
Msa0005790 MtrunA17_Chr2g0284321 49.123 57 29 0 6 62 36 92 7.46e-17 73.9
Msa0005790 MtrunA17_Chr7g0243891 50.877 57 27 1 6 62 375 430 1.06e-16 75.9
Msa0005790 MtrunA17_Chr7g0243891 47.368 57 28 2 6 62 217 271 4.24e-12 62.8
Msa0005790 MtrunA17_Chr8g0335811 52.632 57 26 1 6 62 155 210 1.09e-16 73.9
Msa0005790 MtrunA17_Chr7g0249311 35.115 131 72 5 6 128 393 518 1.26e-16 75.9
Msa0005790 MtrunA17_Chr7g0249311 49.123 57 27 2 6 62 180 234 1.28e-11 61.2
Msa0005790 MtrunA17_Chr2g0289181 33.083 133 76 4 1 120 4 136 1.54e-16 73.6
Msa0005790 MtrunA17_Chr4g0068541 48.333 60 30 1 3 62 206 264 2.35e-16 74.7
Msa0005790 MtrunA17_Chr4g0004911 50.877 57 27 1 6 62 337 392 3.15e-16 74.3
Msa0005790 MtrunA17_Chr4g0004911 47.368 57 29 1 6 62 185 240 6.64e-14 67.8
Msa0005790 MtrunA17_Chr2g0319961 52.632 57 27 0 6 62 81 137 5.03e-16 72.4
Msa0005790 MtrunA17_Chr8g0386241 46.774 62 32 1 6 67 104 164 6.40e-16 70.9
Msa0005790 MtrunA17_Chr7g0249301 50.877 57 27 1 6 62 293 348 9.07e-16 72.8
Msa0005790 MtrunA17_Chr7g0249301 45.000 60 31 2 4 63 61 118 3.90e-11 59.7
Msa0005790 MtrunA17_Chr4g0074001 50.877 57 27 1 6 62 360 415 1.53e-15 72.4
Msa0005790 MtrunA17_Chr2g0293481 50.877 57 28 0 6 62 268 324 3.28e-15 71.6
Msa0005790 MtrunA17_Chr3g0129321 49.123 57 28 1 6 62 119 174 4.73e-15 68.9
Msa0005790 MtrunA17_Chr8g0387501 47.458 59 31 0 4 62 128 186 6.53e-15 69.7
Msa0005790 MtrunA17_Chr8g0383251 45.614 57 30 1 6 62 109 164 1.19e-14 67.8
Msa0005790 MtrunA17_Chr7g0248721 52.459 61 27 2 6 66 142 200 1.25e-14 68.2
Msa0005790 MtrunA17_Chr8g0348311 45.614 57 31 0 6 62 156 212 1.55e-14 69.3
Msa0005790 MtrunA17_Chr7g0248691 47.368 57 30 0 6 62 155 211 3.23e-14 68.2
Msa0005790 MtrunA17_Chr7g0270051 47.368 57 30 0 6 62 54 110 4.47e-14 67.4
Msa0005790 MtrunA17_Chr6g0485431 44.262 61 32 2 4 63 153 212 9.41e-14 67.0
Msa0005790 MtrunA17_Chr1g0202461 36.842 76 48 0 6 81 262 337 9.58e-14 67.0
Msa0005790 MtrunA17_Chr4g0024391 43.103 58 33 0 4 61 228 285 1.31e-13 67.0
Msa0005790 MtrunA17_Chr8g0387981 42.667 75 41 1 6 78 133 207 5.80e-13 65.1
Msa0005790 MtrunA17_Chr1g0189391 47.458 59 29 2 6 63 98 155 6.30e-13 64.7
Msa0005790 MtrunA17_Chr3g0126391 33.333 108 70 1 6 111 134 241 1.07e-12 63.9
Msa0005790 MtrunA17_Chr5g0447711 49.153 59 29 1 4 62 229 286 2.80e-12 62.8
Msa0005790 MtrunA17_Chr5g0432071 42.105 57 31 2 6 62 105 159 4.91e-12 61.2
Msa0005790 MtrunA17_Chr8g0347251 49.153 59 28 1 4 60 135 193 1.40e-11 60.8
Msa0005790 MtrunA17_Chr7g0275531 43.077 65 35 1 6 68 119 183 3.81e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0005790 AT2G25000.2 55.319 141 47 2 4 144 102 226 3.15e-50 160
Msa0005790 AT2G25000.4 55.319 141 47 2 4 144 102 226 3.15e-50 160
Msa0005790 AT2G25000.3 55.319 141 47 2 4 144 124 248 1.60e-49 159
Msa0005790 AT2G25000.1 55.319 141 47 2 4 144 145 269 1.66e-49 160
Msa0005790 AT4G31800.2 55.634 142 54 3 4 144 110 243 2.27e-48 156
Msa0005790 AT4G31800.1 55.634 142 54 3 4 144 175 308 5.23e-48 157
Msa0005790 AT1G80840.1 49.359 156 54 4 4 140 145 294 1.30e-45 151
Msa0005790 AT1G68150.1 64.912 57 20 0 6 62 236 292 1.54e-23 94.7
Msa0005790 AT4G04450.2 52.632 76 36 0 6 81 199 274 1.59e-23 95.1
Msa0005790 AT5G15130.2 54.054 74 34 0 6 79 186 259 3.03e-23 94.7
Msa0005790 AT5G15130.1 54.054 74 34 0 6 79 228 301 4.06e-23 94.7
Msa0005790 AT4G04450.1 52.632 76 36 0 6 81 293 368 4.08e-23 94.4
Msa0005790 AT1G62300.1 61.017 59 23 0 4 62 311 369 1.07e-22 93.2
Msa0005790 AT4G22070.4 59.016 61 25 0 2 62 294 354 1.47e-22 92.8
Msa0005790 AT4G22070.3 59.016 61 25 0 2 62 294 354 1.47e-22 92.8
Msa0005790 AT4G22070.2 59.016 61 25 0 2 62 294 354 1.47e-22 92.8
Msa0005790 AT4G22070.1 59.016 61 25 0 2 62 294 354 1.47e-22 92.8
Msa0005790 AT1G18860.1 64.912 57 20 0 6 62 240 296 1.50e-22 92.8
Msa0005790 AT4G01720.1 64.407 59 21 0 4 62 238 296 3.41e-22 91.7
Msa0005790 AT4G31800.3 92.308 39 3 0 4 42 175 213 7.68e-22 87.8
Msa0005790 AT1G64000.1 57.377 61 25 1 6 66 115 174 3.25e-20 82.8
Msa0005790 AT4G18170.1 53.333 60 27 1 3 62 170 228 7.14e-20 84.0
Msa0005790 AT1G29860.1 53.333 60 27 1 3 62 134 192 7.80e-20 83.6
Msa0005790 AT5G41570.1 57.377 61 25 1 6 66 99 158 2.03e-19 80.5
Msa0005790 AT2G47260.1 55.000 60 26 1 3 62 172 230 2.46e-19 82.8
Msa0005790 AT5G26170.1 50.877 57 27 1 6 62 114 169 3.26e-19 79.7
Msa0005790 AT2G04880.2 57.627 59 24 1 4 62 282 339 3.55e-19 83.2
Msa0005790 AT2G04880.1 57.627 59 24 1 4 62 306 363 4.06e-19 83.2
Msa0005790 AT4G26640.5 56.140 57 24 1 6 62 206 261 7.44e-19 82.0
Msa0005790 AT4G26640.6 56.140 57 24 1 6 62 206 261 7.44e-19 82.0
Msa0005790 AT4G26640.4 56.140 57 24 1 6 62 206 261 7.44e-19 82.0
Msa0005790 AT4G26640.3 56.140 57 24 1 6 62 206 261 7.44e-19 82.0
Msa0005790 AT4G26640.1 56.140 57 24 1 6 62 310 365 9.72e-19 82.0
Msa0005790 AT4G26640.2 56.140 57 24 1 6 62 382 437 9.87e-19 82.0
Msa0005790 AT4G26640.7 56.140 57 24 1 6 62 342 397 1.03e-18 82.0
Msa0005790 AT5G46350.1 51.667 60 28 1 3 62 181 239 1.04e-18 80.9
Msa0005790 AT1G13960.2 56.140 57 24 1 6 62 257 312 2.00e-18 80.5
Msa0005790 AT1G13960.2 50.877 57 26 2 6 62 77 131 2.84e-13 66.2
Msa0005790 AT2G03340.1 56.140 57 24 1 6 62 416 471 2.00e-18 81.3
Msa0005790 AT2G03340.1 50.877 57 26 2 6 62 251 305 5.34e-14 68.6
Msa0005790 AT1G13960.1 56.140 57 24 1 6 62 410 465 2.00e-18 81.3
Msa0005790 AT1G13960.1 50.877 57 26 2 6 62 230 284 2.43e-13 66.6
Msa0005790 AT5G13080.1 54.839 62 27 1 6 67 68 128 2.36e-18 76.6
Msa0005790 AT1G69310.4 52.542 59 27 1 4 62 146 203 3.12e-18 79.3
Msa0005790 AT1G69310.2 52.542 59 27 1 4 62 146 203 3.12e-18 79.3
Msa0005790 AT1G69310.1 52.542 59 27 1 4 62 146 203 3.12e-18 79.3
Msa0005790 AT5G49520.1 54.386 57 25 1 6 62 222 277 3.40e-18 80.1
Msa0005790 AT2G30590.1 52.632 57 27 0 6 62 314 370 5.22e-18 79.7
Msa0005790 AT1G69810.1 55.000 60 26 1 4 62 202 261 5.62e-18 79.3
Msa0005790 AT1G69810.2 55.000 60 26 1 4 62 144 203 5.95e-18 79.0
Msa0005790 AT4G31550.1 50.877 57 28 0 6 62 247 303 6.24e-18 79.0
Msa0005790 AT4G31550.2 50.877 57 28 0 6 62 246 302 6.44e-18 79.0
Msa0005790 AT5G28650.1 47.887 71 31 1 6 76 263 327 7.13e-18 79.0
Msa0005790 AT5G07100.2 50.877 57 27 1 6 62 142 197 8.05e-18 77.0
Msa0005790 AT5G07100.2 49.123 57 28 1 6 62 25 80 1.40e-13 65.9
Msa0005790 AT5G07100.4 50.877 57 27 1 6 62 142 197 8.05e-18 77.0
Msa0005790 AT5G07100.4 49.123 57 28 1 6 62 25 80 1.40e-13 65.9
Msa0005790 AT5G07100.5 50.877 57 27 1 6 62 142 197 8.05e-18 77.0
Msa0005790 AT5G07100.5 49.123 57 28 1 6 62 25 80 1.40e-13 65.9
Msa0005790 AT5G07100.3 50.877 57 27 1 6 62 142 197 8.05e-18 77.0
Msa0005790 AT5G07100.3 49.123 57 28 1 6 62 25 80 1.40e-13 65.9
Msa0005790 AT2G23320.1 49.123 57 29 0 6 62 241 297 9.08e-18 78.6
Msa0005790 AT5G56270.1 54.386 57 25 1 6 62 488 543 9.87e-18 79.3
Msa0005790 AT5G56270.1 50.877 57 26 2 6 62 274 328 3.69e-12 63.2
Msa0005790 AT5G07100.1 50.877 57 27 1 6 62 235 290 1.92e-17 77.4
Msa0005790 AT5G07100.1 49.123 57 28 1 6 62 118 173 3.00e-13 65.9
Msa0005790 AT2G24570.1 50.877 57 28 0 6 62 244 300 3.34e-17 77.0
Msa0005790 AT1G29280.1 50.877 57 28 0 6 62 75 131 3.59e-17 75.9
Msa0005790 AT3G04670.1 45.070 71 33 1 6 76 263 327 3.69e-17 77.0
Msa0005790 AT3G62340.1 50.000 62 30 1 1 62 114 174 3.81e-17 76.3
Msa0005790 AT2G38470.1 52.632 57 26 1 6 62 363 418 5.06e-17 77.0
Msa0005790 AT2G38470.1 50.877 57 26 2 6 62 185 239 4.29e-14 68.9
Msa0005790 AT3G01080.2 52.632 57 26 1 6 62 345 400 5.59e-17 77.0
Msa0005790 AT3G01080.2 49.123 57 27 2 6 62 206 260 1.34e-11 61.6
Msa0005790 AT2G44745.1 52.632 57 26 1 6 62 146 201 6.31e-17 74.7
Msa0005790 AT3G01080.1 52.632 57 26 1 6 62 307 362 6.52e-17 76.6
Msa0005790 AT3G01080.1 49.123 57 27 2 6 62 168 222 1.65e-11 61.2
Msa0005790 AT4G24240.1 46.552 58 31 0 6 63 282 339 7.19e-17 76.3
Msa0005790 AT4G30935.1 52.632 57 26 1 6 62 332 387 1.61e-16 75.5
Msa0005790 AT2G30250.1 49.153 59 29 1 4 62 327 384 2.04e-16 75.1
Msa0005790 AT2G30250.1 46.479 71 34 3 6 76 167 233 8.47e-12 62.0
Msa0005790 AT1G55600.1 52.632 57 26 1 6 62 308 363 3.42e-16 74.7
Msa0005790 AT3G01970.1 49.180 61 30 1 6 66 66 125 5.40e-16 70.5
Msa0005790 AT4G39410.1 50.877 57 27 1 6 62 224 279 7.74e-16 72.8
Msa0005790 AT2G37260.3 49.153 59 29 1 4 62 268 325 9.94e-16 73.2
Msa0005790 AT2G37260.3 53.448 58 25 2 5 62 85 140 6.35e-15 70.9
Msa0005790 AT2G37260.1 49.153 59 29 1 4 62 348 405 1.02e-15 73.2
Msa0005790 AT2G37260.1 53.448 58 25 2 5 62 165 220 5.67e-15 71.2
Msa0005790 AT2G37260.2 49.153 59 29 1 4 62 266 323 1.05e-15 72.8
Msa0005790 AT2G37260.2 53.448 58 25 2 5 62 83 138 7.09e-15 70.5
Msa0005790 AT2G21900.1 50.877 57 27 1 6 62 110 165 1.79e-15 70.5
Msa0005790 AT2G34830.1 50.877 57 28 0 6 62 216 272 4.11e-15 71.6
Msa0005790 AT2G34830.2 50.877 57 28 0 6 62 225 281 4.24e-15 71.6
Msa0005790 AT2G46130.1 50.877 57 27 1 6 62 31 86 6.63e-15 66.6
Msa0005790 AT1G30650.1 50.877 57 28 0 6 62 218 274 7.31e-15 70.9
Msa0005790 AT5G64810.1 45.614 57 30 1 6 62 111 166 8.00e-15 68.6
Msa0005790 AT3G58710.1 49.123 57 29 0 6 62 72 128 1.07e-14 69.3
Msa0005790 AT3G58710.2 49.123 57 29 0 6 62 71 127 1.13e-14 69.3
Msa0005790 AT5G43290.1 47.368 57 29 1 6 62 115 170 2.41e-14 68.6
Msa0005790 AT4G01250.1 45.614 57 31 0 6 62 129 185 2.75e-14 68.6
Msa0005790 AT5G52830.1 49.123 57 29 0 6 62 166 222 3.36e-14 68.6
Msa0005790 AT4G26440.1 49.123 57 28 1 6 62 373 428 3.67e-14 68.9
Msa0005790 AT4G26440.1 47.368 57 28 2 6 62 179 233 1.01e-11 62.0
Msa0005790 AT4G23550.1 30.282 142 90 4 4 143 139 273 1.05e-13 67.0
Msa0005790 AT1G69310.3 49.153 59 25 2 4 62 146 199 1.13e-13 66.6
Msa0005790 AT5G45050.1 47.368 57 30 0 6 62 1181 1237 1.71e-13 67.0
Msa0005790 AT5G45050.2 47.368 57 30 0 6 62 1153 1209 1.85e-13 67.0
Msa0005790 AT5G45050.4 47.368 57 30 0 6 62 1042 1098 1.87e-13 67.0
Msa0005790 AT3G01080.3 49.123 57 27 2 6 62 206 260 1.20e-11 61.6
Msa0005790 AT1G80590.1 44.828 58 30 1 5 60 85 142 3.33e-11 59.7
Msa0005790 AT2G46400.1 44.068 59 31 1 4 60 103 161 3.61e-11 60.1
Msa0005790 AT1G66560.1 43.860 57 30 1 6 60 104 160 5.53e-11 58.9
Msa0005790 AT2G40740.1 45.614 57 29 1 6 60 174 230 9.54e-11 58.9

Find 51 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTATTTCTGGAAGAATTT+TGG 0.107436 1_1:-8557783 Msa0005790:CDS
GCACTTGCCACTGCTATTTC+TGG 0.167473 1_1:-8557794 Msa0005790:CDS
TTTGGACCATACTTCTAATA+AGG 0.232805 1_1:-8557765 Msa0005790:CDS
GTCTTCACCTAAGGCTTATA+AGG 0.247602 1_1:-8558893 Msa0005790:five_prime_UTR
AATTGCTTGATAGATGATTT+AGG 0.254015 1_1:+8557869 None:intergenic
TGTATAATGTTGTGCATATA+TGG 0.302379 1_1:-8557723 Msa0005790:three_prime_UTR
GCAAGTGCTGTAGTGAAATT+AGG 0.319456 1_1:+8557809 None:intergenic
ATACGAACCTTGAGTATAAA+AGG 0.320556 1_1:+8559894 None:intergenic
CAAAGTGAAGAAGCTCCTTT+AGG 0.328438 1_1:-8557962 Msa0005790:CDS
GGATATCAATGGAGGAAATA+TGG 0.328462 1_1:-8558693 Msa0005790:CDS
ATTTGGCCTTATTAGAAGTA+TGG 0.343403 1_1:+8557759 None:intergenic
AATATGTTTGGTAATGTTAG+AGG 0.347609 1_1:-8558994 Msa0005790:five_prime_UTR
TACATGGAAATTTCACCATT+TGG 0.351460 1_1:+8557742 None:intergenic
ACACACATTATTGAAGTTGC+TGG 0.354093 1_1:+8558791 None:intergenic
TTGTGAACAGGACGAAGTTT+TGG 0.359854 1_1:-8559190 Msa0005790:intron
CCTCTCCTAGAGCTTACTTT+AGG 0.371319 1_1:-8558647 Msa0005790:CDS
TAAAAGGAACATTAACGTTA+AGG 0.404032 1_1:+8559910 None:intergenic
TATGTTGCAACTAGTATAGT+AGG 0.404321 1_1:+8558040 None:intergenic
GAAAGTTGCATCAATATGTT+TGG 0.406359 1_1:-8559006 Msa0005790:five_prime_UTR
AGGAACATTATCAAGCTTCA+TGG 0.420222 1_1:+8557889 None:intergenic
ATGAAGAATCATTAATCAAA+AGG 0.454669 1_1:-8558930 Msa0005790:five_prime_UTR
CTAAAGGAGCTTCTTCACTT+TGG 0.478227 1_1:+8557963 None:intergenic
ACAAGAACCTTATAAGCCTT+AGG 0.486641 1_1:+8558886 None:intergenic
CATTAATCAAAAGGCCATGT+AGG 0.493040 1_1:-8558921 Msa0005790:five_prime_UTR
ATACTAGTTGCAACATATGA+AGG 0.494693 1_1:-8558034 Msa0005790:CDS
AACTGGGCAGCTTGGAGCAT+AGG 0.506437 1_1:+8558620 None:intergenic
CTTTCAGCAGCAAATTGCAA+TGG 0.512836 1_1:-8559961 None:intergenic
ATACTTCTAATAAGGCCAAA+TGG 0.514058 1_1:-8557757 Msa0005790:CDS
ACATTATCAAGCTTCATGGT+TGG 0.514996 1_1:+8557893 None:intergenic
TAGGGATATGTCTTCACCTA+AGG 0.525286 1_1:-8558902 Msa0005790:five_prime_UTR
GAGCACCTAAAGTAAGCTCT+AGG 0.538868 1_1:+8558642 None:intergenic
ATTAATCAAAAGGCCATGTA+GGG 0.538909 1_1:-8558920 Msa0005790:five_prime_UTR
CCTAAAGTAAGCTCTAGGAG+AGG 0.548395 1_1:+8558647 None:intergenic
GTAACATGAACTGAACCTAA+AGG 0.560432 1_1:+8557947 None:intergenic
CTAAAGTAAGCTCTAGGAGA+GGG 0.569732 1_1:+8558648 None:intergenic
GTCTCAGTTCTGAGAACAAG+AGG 0.575865 1_1:-8559152 Msa0005790:five_prime_UTR
TATATGCACAACATTATACA+TGG 0.580638 1_1:+8557726 None:intergenic
TTGTGGTATAAAGTATGTGA+TGG 0.581181 1_1:-8558718 Msa0005790:intron
ATGGAGGAAATATGGTCAGA+AGG 0.585738 1_1:-8558685 Msa0005790:CDS
TTTCAGATTTCTCATGACCA+TGG 0.592416 1_1:+8558002 None:intergenic
GGTATAAAGTATGTGATGGA+TGG 0.592987 1_1:-8558714 Msa0005790:intron
ATGTGATGGATGGATATCAA+TGG 0.593080 1_1:-8558704 Msa0005790:CDS
ATGTTGCAACTAGTATAGTA+GGG 0.601976 1_1:+8558041 None:intergenic
TGCAATGGAATCAACTTGTG+TGG 0.619908 1_1:-8559946 Msa0005790:five_prime_UTR
GGTGAAGACATATCCCTACA+TGG 0.630918 1_1:+8558907 None:intergenic
GTTCTTTGAATAATTTGCTG+AGG 0.646817 1_1:+8557920 None:intergenic
TAAAGTAAGCTCTAGGAGAG+GGG 0.664718 1_1:+8558649 None:intergenic
TGATGGATGGATATCAATGG+AGG 0.669535 1_1:-8558701 Msa0005790:CDS
AATTCTTCCAGAAATAGCAG+TGG 0.680346 1_1:+8557787 None:intergenic
TATGAAGGAGAGCACAACCA+TGG 0.694590 1_1:-8558019 Msa0005790:CDS
TAACATGTGTGAGAACTGTG+AGG 0.784888 1_1:-8559112 Msa0005790:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATATTAATTCATAATCA+AGG - chr1_1:8557906-8557925 Msa0005790:CDS 10.0%
!! TATACTAATTTCATTAAAAT+TGG - chr1_1:8558273-8558292 Msa0005790:intron 10.0%
!! AAAATATTAATTCATAATCA+AGG - chr1_1:8557906-8557925 Msa0005790:CDS 10.0%
!! TATACTAATTTCATTAAAAT+TGG - chr1_1:8558273-8558292 Msa0005790:intron 10.0%
!!! TTTAATTTTCATGTATGATC+AGG - chr1_1:8557717-8557736 Msa0005790:three_prime_UTR 20.0%
!!! TTAATTTTCATGTATGATCA+GGG - chr1_1:8557718-8557737 Msa0005790:three_prime_UTR 20.0%
!! ATGAAGAATCATTAATCAAA+AGG - chr1_1:8558630-8558649 Msa0005790:CDS 20.0%
!!! TTATTACCTTCTTTTTAACT+GGG + chr1_1:8558959-8558978 None:intergenic 20.0%
!!! ATTATTACCTTCTTTTTAAC+TGG + chr1_1:8558960-8558979 None:intergenic 20.0%
!! AAAAATTTGACAAGAACTTT+CGG - chr1_1:8559089-8559108 Msa0005790:five_prime_UTR 20.0%
!! TTTATATGAAAACATGTGAT+TGG + chr1_1:8559128-8559147 None:intergenic 20.0%
!! ATTCTTTCTCATCAATATAT+TGG + chr1_1:8559201-8559220 None:intergenic 20.0%
!!! TATTGATGAGAAAGAATTTT+AGG - chr1_1:8559204-8559223 Msa0005790:intron 20.0%
!!! ATTGATGAGAAAGAATTTTA+GGG - chr1_1:8559205-8559224 Msa0005790:intron 20.0%
!! CGTTGAAAAGAAAAAATAAA+GGG + chr1_1:8559263-8559282 None:intergenic 20.0%
!! TCGTTGAAAAGAAAAAATAA+AGG + chr1_1:8559264-8559283 None:intergenic 20.0%
!!! ATCAAAACTTGATCTTATTT+GGG + chr1_1:8559457-8559476 None:intergenic 20.0%
!! CTCTTATGTCATTATTAATT+AGG - chr1_1:8559477-8559496 Msa0005790:intron 20.0%
!!! TTTAATTTTCATGTATGATC+AGG - chr1_1:8557717-8557736 Msa0005790:three_prime_UTR 20.0%
!!! TTAATTTTCATGTATGATCA+GGG - chr1_1:8557718-8557737 Msa0005790:three_prime_UTR 20.0%
!! ATGAAGAATCATTAATCAAA+AGG - chr1_1:8558630-8558649 Msa0005790:CDS 20.0%
!!! TTATTACCTTCTTTTTAACT+GGG + chr1_1:8558959-8558978 None:intergenic 20.0%
!!! ATTATTACCTTCTTTTTAAC+TGG + chr1_1:8558960-8558979 None:intergenic 20.0%
!! AAAAATTTGACAAGAACTTT+CGG - chr1_1:8559089-8559108 Msa0005790:five_prime_UTR 20.0%
!! TTTATATGAAAACATGTGAT+TGG + chr1_1:8559128-8559147 None:intergenic 20.0%
!! ATTCTTTCTCATCAATATAT+TGG + chr1_1:8559201-8559220 None:intergenic 20.0%
!!! TATTGATGAGAAAGAATTTT+AGG - chr1_1:8559204-8559223 Msa0005790:intron 20.0%
!!! ATTGATGAGAAAGAATTTTA+GGG - chr1_1:8559205-8559224 Msa0005790:intron 20.0%
!! CGTTGAAAAGAAAAAATAAA+GGG + chr1_1:8559263-8559282 None:intergenic 20.0%
!! TCGTTGAAAAGAAAAAATAA+AGG + chr1_1:8559264-8559283 None:intergenic 20.0%
!!! ATCAAAACTTGATCTTATTT+GGG + chr1_1:8559457-8559476 None:intergenic 20.0%
!! CTCTTATGTCATTATTAATT+AGG - chr1_1:8559477-8559496 Msa0005790:intron 20.0%
! TAAAAGGAACATTAACGTTA+AGG + chr1_1:8557653-8557672 None:intergenic 25.0%
!! TAATGTTCCTTTTATACTCA+AGG - chr1_1:8557659-8557678 Msa0005790:three_prime_UTR 25.0%
! ACTTAAGAAAGTAGTTAACA+AGG - chr1_1:8557788-8557807 Msa0005790:CDS 25.0%
! TCAATCAATCTTAACTACTA+TGG + chr1_1:8558084-8558103 None:intergenic 25.0%
! CACTATATATACACCTAAAA+AGG - chr1_1:8558176-8558195 Msa0005790:intron 25.0%
!!! AATATGTTTGGTAATGTTAG+AGG - chr1_1:8558566-8558585 Msa0005790:intron 25.0%
! ATGTTAAGAATACACATGTT+TGG + chr1_1:8559019-8559038 None:intergenic 25.0%
! TTTCGATAGAGATTACTAAT+AGG + chr1_1:8559072-8559091 None:intergenic 25.0%
!! GTAAACAAATGCTAAGATTT+TGG - chr1_1:8559407-8559426 Msa0005790:intron 25.0%
! GATCAAAACTTGATCTTATT+TGG + chr1_1:8559458-8559477 None:intergenic 25.0%
! AATTGCTTGATAGATGATTT+AGG + chr1_1:8559694-8559713 None:intergenic 25.0%
!! ATCATCTATCAAGCAATTTT+TGG - chr1_1:8559696-8559715 Msa0005790:intron 25.0%
! TATATGCACAACATTATACA+TGG + chr1_1:8559837-8559856 None:intergenic 25.0%
! TGTATAATGTTGTGCATATA+TGG - chr1_1:8559837-8559856 Msa0005790:intron 25.0%
! TAAAAGGAACATTAACGTTA+AGG + chr1_1:8557653-8557672 None:intergenic 25.0%
!! TAATGTTCCTTTTATACTCA+AGG - chr1_1:8557659-8557678 Msa0005790:three_prime_UTR 25.0%
! ACTTAAGAAAGTAGTTAACA+AGG - chr1_1:8557788-8557807 Msa0005790:CDS 25.0%
! TCAATCAATCTTAACTACTA+TGG + chr1_1:8558084-8558103 None:intergenic 25.0%
! CACTATATATACACCTAAAA+AGG - chr1_1:8558176-8558195 Msa0005790:intron 25.0%
!!! AATATGTTTGGTAATGTTAG+AGG - chr1_1:8558566-8558585 Msa0005790:intron 25.0%
! ATGTTAAGAATACACATGTT+TGG + chr1_1:8559019-8559038 None:intergenic 25.0%
! TTTCGATAGAGATTACTAAT+AGG + chr1_1:8559072-8559091 None:intergenic 25.0%
!! GTAAACAAATGCTAAGATTT+TGG - chr1_1:8559407-8559426 Msa0005790:intron 25.0%
! GATCAAAACTTGATCTTATT+TGG + chr1_1:8559458-8559477 None:intergenic 25.0%
! AATTGCTTGATAGATGATTT+AGG + chr1_1:8559694-8559713 None:intergenic 25.0%
!! ATCATCTATCAAGCAATTTT+TGG - chr1_1:8559696-8559715 Msa0005790:intron 25.0%
! TATATGCACAACATTATACA+TGG + chr1_1:8559837-8559856 None:intergenic 25.0%
! TGTATAATGTTGTGCATATA+TGG - chr1_1:8559837-8559856 Msa0005790:intron 25.0%
ATACGAACCTTGAGTATAAA+AGG + chr1_1:8557669-8557688 None:intergenic 30.0%
AAGAAAGTAGTTAACAAGGT+TGG - chr1_1:8557792-8557811 Msa0005790:CDS 30.0%
!!! CTTAGGGCACAAATTTTTTT+GGG + chr1_1:8558029-8558048 None:intergenic 30.0%
!!! ACTTAGGGCACAAATTTTTT+TGG + chr1_1:8558030-8558049 None:intergenic 30.0%
TCAATCTTAACTACTATGGA+TGG + chr1_1:8558080-8558099 None:intergenic 30.0%
! ATCGCTAATTCAACCTTTTT+AGG + chr1_1:8558192-8558211 None:intergenic 30.0%
! CAATGTCACTTAGAAATTCA+GGG + chr1_1:8558344-8558363 None:intergenic 30.0%
! ACATTGGAAATTTTGTGAAC+AGG - chr1_1:8558358-8558377 Msa0005790:intron 30.0%
GAAAGTTGCATCAATATGTT+TGG - chr1_1:8558554-8558573 Msa0005790:intron 30.0%
ATTAATCAAAAGGCCATGTA+GGG - chr1_1:8558640-8558659 Msa0005790:CDS 30.0%
TTGTGGTATAAAGTATGTGA+TGG - chr1_1:8558842-8558861 Msa0005790:five_prime_UTR 30.0%
AGATTACTAATAGGTGAAGT+AGG + chr1_1:8559063-8559082 None:intergenic 30.0%
TATGAAAACATGTGATTGGT+AGG + chr1_1:8559124-8559143 None:intergenic 30.0%
ATGTTGCAACTAGTATAGTA+GGG + chr1_1:8559522-8559541 None:intergenic 30.0%
TATGTTGCAACTAGTATAGT+AGG + chr1_1:8559523-8559542 None:intergenic 30.0%
ATACTAGTTGCAACATATGA+AGG - chr1_1:8559526-8559545 Msa0005790:intron 30.0%
!! GTTCTTTGAATAATTTGCTG+AGG + chr1_1:8559643-8559662 None:intergenic 30.0%
!!! GCAATTTTTGGTTCAACAAA+TGG - chr1_1:8559708-8559727 Msa0005790:intron 30.0%
!!! TGCTATTTCTGGAAGAATTT+TGG - chr1_1:8559777-8559796 Msa0005790:intron 30.0%
TTTGGACCATACTTCTAATA+AGG - chr1_1:8559795-8559814 Msa0005790:intron 30.0%
!! ATTTGGCCTTATTAGAAGTA+TGG + chr1_1:8559804-8559823 None:intergenic 30.0%
ATACTTCTAATAAGGCCAAA+TGG - chr1_1:8559803-8559822 Msa0005790:intron 30.0%
TACATGGAAATTTCACCATT+TGG + chr1_1:8559821-8559840 None:intergenic 30.0%
ATACGAACCTTGAGTATAAA+AGG + chr1_1:8557669-8557688 None:intergenic 30.0%
AAGAAAGTAGTTAACAAGGT+TGG - chr1_1:8557792-8557811 Msa0005790:CDS 30.0%
!!! CTTAGGGCACAAATTTTTTT+GGG + chr1_1:8558029-8558048 None:intergenic 30.0%
!!! ACTTAGGGCACAAATTTTTT+TGG + chr1_1:8558030-8558049 None:intergenic 30.0%
TCAATCTTAACTACTATGGA+TGG + chr1_1:8558080-8558099 None:intergenic 30.0%
! ATCGCTAATTCAACCTTTTT+AGG + chr1_1:8558192-8558211 None:intergenic 30.0%
! CAATGTCACTTAGAAATTCA+GGG + chr1_1:8558344-8558363 None:intergenic 30.0%
! ACATTGGAAATTTTGTGAAC+AGG - chr1_1:8558358-8558377 Msa0005790:intron 30.0%
GAAAGTTGCATCAATATGTT+TGG - chr1_1:8558554-8558573 Msa0005790:intron 30.0%
ATTAATCAAAAGGCCATGTA+GGG - chr1_1:8558640-8558659 Msa0005790:CDS 30.0%
TTGTGGTATAAAGTATGTGA+TGG - chr1_1:8558842-8558861 Msa0005790:five_prime_UTR 30.0%
AGATTACTAATAGGTGAAGT+AGG + chr1_1:8559063-8559082 None:intergenic 30.0%
TATGAAAACATGTGATTGGT+AGG + chr1_1:8559124-8559143 None:intergenic 30.0%
ATGTTGCAACTAGTATAGTA+GGG + chr1_1:8559522-8559541 None:intergenic 30.0%
TATGTTGCAACTAGTATAGT+AGG + chr1_1:8559523-8559542 None:intergenic 30.0%
ATACTAGTTGCAACATATGA+AGG - chr1_1:8559526-8559545 Msa0005790:intron 30.0%
!! GTTCTTTGAATAATTTGCTG+AGG + chr1_1:8559643-8559662 None:intergenic 30.0%
!!! GCAATTTTTGGTTCAACAAA+TGG - chr1_1:8559708-8559727 Msa0005790:intron 30.0%
!!! TGCTATTTCTGGAAGAATTT+TGG - chr1_1:8559777-8559796 Msa0005790:intron 30.0%
TTTGGACCATACTTCTAATA+AGG - chr1_1:8559795-8559814 Msa0005790:intron 30.0%
!! ATTTGGCCTTATTAGAAGTA+TGG + chr1_1:8559804-8559823 None:intergenic 30.0%
ATACTTCTAATAAGGCCAAA+TGG - chr1_1:8559803-8559822 Msa0005790:intron 30.0%
TACATGGAAATTTCACCATT+TGG + chr1_1:8559821-8559840 None:intergenic 30.0%
! CCAATGTCACTTAGAAATTC+AGG + chr1_1:8558345-8558364 None:intergenic 35.0%
CCTGAATTTCTAAGTGACAT+TGG - chr1_1:8558342-8558361 Msa0005790:intron 35.0%
CATTAATCAAAAGGCCATGT+AGG - chr1_1:8558639-8558658 Msa0005790:CDS 35.0%
ACAAGAACCTTATAAGCCTT+AGG + chr1_1:8558677-8558696 None:intergenic 35.0%
ACACACATTATTGAAGTTGC+TGG + chr1_1:8558772-8558791 None:intergenic 35.0%
! GGTATAAAGTATGTGATGGA+TGG - chr1_1:8558846-8558865 Msa0005790:five_prime_UTR 35.0%
!! ATGTGATGGATGGATATCAA+TGG - chr1_1:8558856-8558875 Msa0005790:five_prime_UTR 35.0%
GGATATCAATGGAGGAAATA+TGG - chr1_1:8558867-8558886 Msa0005790:five_prime_UTR 35.0%
TTACTAATAGGTGAAGTAGG+CGG + chr1_1:8559060-8559079 None:intergenic 35.0%
AATTTGACAAGAACTTTCGG+TGG - chr1_1:8559092-8559111 Msa0005790:five_prime_UTR 35.0%
ATTTGACAAGAACTTTCGGT+GGG - chr1_1:8559093-8559112 Msa0005790:five_prime_UTR 35.0%
! CATCAATATATTGGTCTGAG+TGG + chr1_1:8559192-8559211 None:intergenic 35.0%
TTTCAGATTTCTCATGACCA+TGG + chr1_1:8559561-8559580 None:intergenic 35.0%
GTAACATGAACTGAACCTAA+AGG + chr1_1:8559616-8559635 None:intergenic 35.0%
ACATTATCAAGCTTCATGGT+TGG + chr1_1:8559670-8559689 None:intergenic 35.0%
AGGAACATTATCAAGCTTCA+TGG + chr1_1:8559674-8559693 None:intergenic 35.0%
AATTCTTCCAGAAATAGCAG+TGG + chr1_1:8559776-8559795 None:intergenic 35.0%
! CCAATGTCACTTAGAAATTC+AGG + chr1_1:8558345-8558364 None:intergenic 35.0%
CCTGAATTTCTAAGTGACAT+TGG - chr1_1:8558342-8558361 Msa0005790:intron 35.0%
CATTAATCAAAAGGCCATGT+AGG - chr1_1:8558639-8558658 Msa0005790:CDS 35.0%
ACAAGAACCTTATAAGCCTT+AGG + chr1_1:8558677-8558696 None:intergenic 35.0%
ACACACATTATTGAAGTTGC+TGG + chr1_1:8558772-8558791 None:intergenic 35.0%
! GGTATAAAGTATGTGATGGA+TGG - chr1_1:8558846-8558865 Msa0005790:five_prime_UTR 35.0%
!! ATGTGATGGATGGATATCAA+TGG - chr1_1:8558856-8558875 Msa0005790:five_prime_UTR 35.0%
GGATATCAATGGAGGAAATA+TGG - chr1_1:8558867-8558886 Msa0005790:five_prime_UTR 35.0%
TTACTAATAGGTGAAGTAGG+CGG + chr1_1:8559060-8559079 None:intergenic 35.0%
AATTTGACAAGAACTTTCGG+TGG - chr1_1:8559092-8559111 Msa0005790:five_prime_UTR 35.0%
ATTTGACAAGAACTTTCGGT+GGG - chr1_1:8559093-8559112 Msa0005790:five_prime_UTR 35.0%
! CATCAATATATTGGTCTGAG+TGG + chr1_1:8559192-8559211 None:intergenic 35.0%
TTTCAGATTTCTCATGACCA+TGG + chr1_1:8559561-8559580 None:intergenic 35.0%
GTAACATGAACTGAACCTAA+AGG + chr1_1:8559616-8559635 None:intergenic 35.0%
ACATTATCAAGCTTCATGGT+TGG + chr1_1:8559670-8559689 None:intergenic 35.0%
AGGAACATTATCAAGCTTCA+TGG + chr1_1:8559674-8559693 None:intergenic 35.0%
AATTCTTCCAGAAATAGCAG+TGG + chr1_1:8559776-8559795 None:intergenic 35.0%
TGCAATGGAATCAACTTGTG+TGG - chr1_1:8557614-8557633 Msa0005790:three_prime_UTR 40.0%
GAACGTGAGTGATGAATTGA+CGG + chr1_1:8557757-8557776 None:intergenic 40.0%
! TTGTGAACAGGACGAAGTTT+TGG - chr1_1:8558370-8558389 Msa0005790:intron 40.0%
TAACATGTGTGAGAACTGTG+AGG - chr1_1:8558448-8558467 Msa0005790:intron 40.0%
TAGGGATATGTCTTCACCTA+AGG - chr1_1:8558658-8558677 Msa0005790:CDS 40.0%
GTCTTCACCTAAGGCTTATA+AGG - chr1_1:8558667-8558686 Msa0005790:CDS 40.0%
! TGATGGATGGATATCAATGG+AGG - chr1_1:8558859-8558878 Msa0005790:five_prime_UTR 40.0%
ATGGAGGAAATATGGTCAGA+AGG - chr1_1:8558875-8558894 Msa0005790:five_prime_UTR 40.0%
!! TAAAGTAAGCTCTAGGAGAG+GGG + chr1_1:8558914-8558933 None:intergenic 40.0%
!! CTAAAGTAAGCTCTAGGAGA+GGG + chr1_1:8558915-8558934 None:intergenic 40.0%
!! TTCTTTTTAACTGGGCAGCT+TGG + chr1_1:8558951-8558970 None:intergenic 40.0%
AAGCTGCCCAGTTAAAAAGA+AGG - chr1_1:8558950-8558969 Msa0005790:five_prime_UTR 40.0%
CTAAAGGAGCTTCTTCACTT+TGG + chr1_1:8559600-8559619 None:intergenic 40.0%
CAAAGTGAAGAAGCTCCTTT+AGG - chr1_1:8559598-8559617 Msa0005790:intron 40.0%
! GCAAGTGCTGTAGTGAAATT+AGG + chr1_1:8559754-8559773 None:intergenic 40.0%
TGCAATGGAATCAACTTGTG+TGG - chr1_1:8557614-8557633 Msa0005790:three_prime_UTR 40.0%
GAACGTGAGTGATGAATTGA+CGG + chr1_1:8557757-8557776 None:intergenic 40.0%
! TTGTGAACAGGACGAAGTTT+TGG - chr1_1:8558370-8558389 Msa0005790:intron 40.0%
TAACATGTGTGAGAACTGTG+AGG - chr1_1:8558448-8558467 Msa0005790:intron 40.0%
TAGGGATATGTCTTCACCTA+AGG - chr1_1:8558658-8558677 Msa0005790:CDS 40.0%
GTCTTCACCTAAGGCTTATA+AGG - chr1_1:8558667-8558686 Msa0005790:CDS 40.0%
! TGATGGATGGATATCAATGG+AGG - chr1_1:8558859-8558878 Msa0005790:five_prime_UTR 40.0%
ATGGAGGAAATATGGTCAGA+AGG - chr1_1:8558875-8558894 Msa0005790:five_prime_UTR 40.0%
!! TAAAGTAAGCTCTAGGAGAG+GGG + chr1_1:8558914-8558933 None:intergenic 40.0%
!! CTAAAGTAAGCTCTAGGAGA+GGG + chr1_1:8558915-8558934 None:intergenic 40.0%
!! TTCTTTTTAACTGGGCAGCT+TGG + chr1_1:8558951-8558970 None:intergenic 40.0%
AAGCTGCCCAGTTAAAAAGA+AGG - chr1_1:8558950-8558969 Msa0005790:five_prime_UTR 40.0%
CTAAAGGAGCTTCTTCACTT+TGG + chr1_1:8559600-8559619 None:intergenic 40.0%
CAAAGTGAAGAAGCTCCTTT+AGG - chr1_1:8559598-8559617 Msa0005790:intron 40.0%
! GCAAGTGCTGTAGTGAAATT+AGG + chr1_1:8559754-8559773 None:intergenic 40.0%
! AACTACTATGGATGGCCTTG+AGG + chr1_1:8558072-8558091 None:intergenic 45.0%
!! GTCTCAGTTCTGAGAACAAG+AGG - chr1_1:8558408-8558427 Msa0005790:intron 45.0%
GGTGAAGACATATCCCTACA+TGG + chr1_1:8558656-8558675 None:intergenic 45.0%
!! CCTAAAGTAAGCTCTAGGAG+AGG + chr1_1:8558916-8558935 None:intergenic 45.0%
CCTCTCCTAGAGCTTACTTT+AGG - chr1_1:8558913-8558932 Msa0005790:five_prime_UTR 45.0%
GAGCACCTAAAGTAAGCTCT+AGG + chr1_1:8558921-8558940 None:intergenic 45.0%
! TATGAAGGAGAGCACAACCA+TGG - chr1_1:8559541-8559560 Msa0005790:intron 45.0%
! AACTACTATGGATGGCCTTG+AGG + chr1_1:8558072-8558091 None:intergenic 45.0%
!! GTCTCAGTTCTGAGAACAAG+AGG - chr1_1:8558408-8558427 Msa0005790:intron 45.0%
GGTGAAGACATATCCCTACA+TGG + chr1_1:8558656-8558675 None:intergenic 45.0%
!! CCTAAAGTAAGCTCTAGGAG+AGG + chr1_1:8558916-8558935 None:intergenic 45.0%
CCTCTCCTAGAGCTTACTTT+AGG - chr1_1:8558913-8558932 Msa0005790:five_prime_UTR 45.0%
GAGCACCTAAAGTAAGCTCT+AGG + chr1_1:8558921-8558940 None:intergenic 45.0%
! TATGAAGGAGAGCACAACCA+TGG - chr1_1:8559541-8559560 Msa0005790:intron 45.0%
!!! TAAAAATTTAAAATTAATCA+AGG + chr1_1:8558821-8558840 None:intergenic 5.0%
!!! TAATTTTAAATTTTTATTTG+TGG - chr1_1:8558825-8558844 Msa0005790:five_prime_UTR 5.0%
!!! TAAAAATTTAAAATTAATCA+AGG + chr1_1:8558821-8558840 None:intergenic 5.0%
!!! TAATTTTAAATTTTTATTTG+TGG - chr1_1:8558825-8558844 Msa0005790:five_prime_UTR 5.0%
! CTATGGATGGCCTTGAGGTT+GGG + chr1_1:8558067-8558086 None:intergenic 50.0%
! ACTATGGATGGCCTTGAGGT+TGG + chr1_1:8558068-8558087 None:intergenic 50.0%
!! GCACTTGCCACTGCTATTTC+TGG - chr1_1:8559766-8559785 Msa0005790:intron 50.0%
! CTATGGATGGCCTTGAGGTT+GGG + chr1_1:8558067-8558086 None:intergenic 50.0%
! ACTATGGATGGCCTTGAGGT+TGG + chr1_1:8558068-8558087 None:intergenic 50.0%
!! GCACTTGCCACTGCTATTTC+TGG - chr1_1:8559766-8559785 Msa0005790:intron 50.0%
AACTGGGCAGCTTGGAGCAT+AGG + chr1_1:8558943-8558962 None:intergenic 55.0%
AACTGGGCAGCTTGGAGCAT+AGG + chr1_1:8558943-8558962 None:intergenic 55.0%
GCAGGAGGGGCGGAAACTTA+GGG + chr1_1:8558045-8558064 None:intergenic 60.0%
GCAGGAGGGGCGGAAACTTA+GGG + chr1_1:8558045-8558064 None:intergenic 60.0%
GGCAGGAGGGGCGGAAACTT+AGG + chr1_1:8558046-8558065 None:intergenic 65.0%
TTGAGGTTGGGCAGGAGGGG+CGG + chr1_1:8558055-8558074 None:intergenic 65.0%
GCCTTGAGGTTGGGCAGGAG+GGG + chr1_1:8558058-8558077 None:intergenic 65.0%
GGCCTTGAGGTTGGGCAGGA+GGG + chr1_1:8558059-8558078 None:intergenic 65.0%
! TGGCCTTGAGGTTGGGCAGG+AGG + chr1_1:8558060-8558079 None:intergenic 65.0%
! GGATGGCCTTGAGGTTGGGC+AGG + chr1_1:8558063-8558082 None:intergenic 65.0%
GGCAGGAGGGGCGGAAACTT+AGG + chr1_1:8558046-8558065 None:intergenic 65.0%
TTGAGGTTGGGCAGGAGGGG+CGG + chr1_1:8558055-8558074 None:intergenic 65.0%
GCCTTGAGGTTGGGCAGGAG+GGG + chr1_1:8558058-8558077 None:intergenic 65.0%
GGCCTTGAGGTTGGGCAGGA+GGG + chr1_1:8558059-8558078 None:intergenic 65.0%
! TGGCCTTGAGGTTGGGCAGG+AGG + chr1_1:8558060-8558079 None:intergenic 65.0%
! GGATGGCCTTGAGGTTGGGC+AGG + chr1_1:8558063-8558082 None:intergenic 65.0%
GCCCCTCCTGCCCAACCTCA+AGG - chr1_1:8558054-8558073 Msa0005790:CDS 70.0%
GCCCCTCCTGCCCAACCTCA+AGG - chr1_1:8558054-8558073 Msa0005790:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 8557608 8559974 8557608 ID=Msa0005790;Name=Msa0005790
chr1_1 mRNA 8557608 8559974 8557608 ID=Msa0005790-mRNA-1;Parent=Msa0005790;Name=Msa0005790-mRNA-1;_AED=0.33;_eAED=0.33;_QI=477|0.66|1|1|1|0.75|4|146|150
chr1_1 exon 8557608 8558083 8557608 ID=Msa0005790-mRNA-1:exon:3030;Parent=Msa0005790-mRNA-1
chr1_1 exon 8558611 8558727 8558611 ID=Msa0005790-mRNA-1:exon:3029;Parent=Msa0005790-mRNA-1
chr1_1 exon 8558793 8559202 8558793 ID=Msa0005790-mRNA-1:exon:3028;Parent=Msa0005790-mRNA-1
chr1_1 exon 8559902 8559974 8559902 ID=Msa0005790-mRNA-1:exon:3027;Parent=Msa0005790-mRNA-1
chr1_1 five_prime_UTR 8559902 8559974 8559902 ID=Msa0005790-mRNA-1:five_prime_utr;Parent=Msa0005790-mRNA-1
chr1_1 five_prime_UTR 8558799 8559202 8558799 ID=Msa0005790-mRNA-1:five_prime_utr;Parent=Msa0005790-mRNA-1
chr1_1 CDS 8558793 8558798 8558793 ID=Msa0005790-mRNA-1:cds;Parent=Msa0005790-mRNA-1
chr1_1 CDS 8558611 8558727 8558611 ID=Msa0005790-mRNA-1:cds;Parent=Msa0005790-mRNA-1
chr1_1 CDS 8557754 8558083 8557754 ID=Msa0005790-mRNA-1:cds;Parent=Msa0005790-mRNA-1
chr1_1 three_prime_UTR 8557608 8557753 8557608 ID=Msa0005790-mRNA-1:three_prime_utr;Parent=Msa0005790-mRNA-1
Gene Sequence

>Msa0005790

ATGTGTTATGTGATGGATGGATATCAATGGAGGAAATATGGTCAGAAGGTTACTAGAGATAACCCCTCTCCTAGAGCTTACTTTAGGTGCTCCTATGCTCCAAGCTGCCCAGTTAAAAAGAAGGTGCAAAAAAGTGTAGAAGACCCTACTATACTAGTTGCAACATATGAAGGAGAGCACAACCATGGTCATGAGAAATCTGAAATATCAATGATATCAAGCCAAAGTGAAGAAGCTCCTTTAGGTTCAGTTCATGTTACTTCACCTCAGCAAATTATTCAAAGAACATGTCCAACCATGAAGCTTGATAATGTTCCTAAATCATCTATCAAGCAATTTTTGGTTCAACAAATGGCTACTTCTTTAACAAATGATCCTAATTTCACTACAGCACTTGCCACTGCTATTTCTGGAAGAATTTTGGACCATACTTCTAATAAGGCCAAATGGTGA
Protein sequence

>Msa0005790

MCYVMDGYQWRKYGQKVTRDNPSPRAYFRCSYAPSCPVKKKVQKSVEDPTILVATYEGEHNHGHEKSEISMISSQSEEAPLGSVHVTSPQQIIQRTCPTMKLDNVPKSSIKQFLVQQMATSLTNDPNFTTALATAISGRILDHTSNKAKW*