AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0006680

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0006680 MtrunA17_Chr8g0355091 91.983 237 19 0 1 237 1 237 5.71e-163 450
Msa0006680 MtrunA17_Chr1g0149391 93.671 237 15 0 1 237 1 237 1.66e-154 428
Msa0006680 MtrunA17_Chr1g0206701 90.295 237 23 0 1 237 1 237 4.77e-150 417
Msa0006680 MtrunA17_Chr1g0206721 89.474 228 24 0 1 228 1 228 5.04e-145 404
Msa0006680 MtrunA17_Chr2g0292791 87.764 237 29 0 1 237 1 237 1.56e-144 403
Msa0006680 MtrunA17_Chr1g0206691 85.455 220 32 0 18 237 1 220 1.85e-140 392
Msa0006680 MtrunA17_Chr3g0099421 85.388 219 32 0 1 219 26 244 1.99e-140 394
Msa0006680 MtrunA17_Chr3g0099411 80.365 219 24 1 1 219 1 200 8.17e-125 352
Msa0006680 MtrunA17_Chr3g0089141 72.766 235 46 3 1 225 1 227 7.57e-119 338
Msa0006680 MtrunA17_Chr5g0422941 67.511 237 77 0 1 237 1 237 3.81e-118 336
Msa0006680 MtrunA17_Chr1g0208561 72.766 235 46 3 1 225 1 227 5.26e-118 335
Msa0006680 MtrunA17_Chr2g0317451 67.373 236 77 0 1 236 1 236 1.95e-117 335
Msa0006680 MtrunA17_Chr2g0317481 67.373 236 77 0 1 236 1 236 5.64e-117 333
Msa0006680 MtrunA17_Chr2g0300441 70.042 237 70 1 1 237 1 236 8.63e-117 333
Msa0006680 MtrunA17_Chr1g0188671 69.778 225 68 0 1 225 39 263 3.90e-115 330
Msa0006680 MtrunA17_Chr5g0419601 71.308 237 68 0 1 237 1 237 5.73e-115 328
Msa0006680 MtrunA17_Chr1g0206991 86.264 182 25 0 1 182 1 182 7.05e-115 326
Msa0006680 MtrunA17_Chr1g0187361 70.667 225 66 0 1 225 1 225 1.75e-114 327
Msa0006680 MtrunA17_Chr2g0325971 71.064 235 50 3 1 225 1 227 1.36e-113 324
Msa0006680 MtrunA17_Chr1g0208581 69.787 235 53 3 1 225 1 227 3.18e-111 318
Msa0006680 MtrunA17_Chr5g0422421 68.444 225 71 0 1 225 1 225 4.23e-110 316
Msa0006680 MtrunA17_Chr7g0238991 65.471 223 75 2 16 237 27 248 9.30e-99 288
Msa0006680 MtrunA17_Chr2g0300421 78.906 128 27 0 1 128 1 128 6.71e-67 204
Msa0006680 MtrunA17_Chr3g0085241 51.852 189 81 1 3 191 35 213 9.65e-66 204
Msa0006680 MtrunA17_Chr3g0089151 75.194 129 32 0 1 129 1 129 1.89e-64 196
Msa0006680 MtrunA17_Chr3g0119901 58.442 154 64 0 7 160 7 160 1.31e-63 197
Msa0006680 MtrunA17_Chr3g0111931 67.647 102 33 0 21 122 2 103 2.30e-44 144
Msa0006680 MtrunA17_Chr2g0333981 40.351 171 92 2 5 172 8 171 1.30e-41 140
Msa0006680 MtrunA17_Chr8g0379021 40.462 173 89 3 5 170 8 173 1.65e-39 134
Msa0006680 MtrunA17_Chr4g0018951 45.161 155 73 3 5 159 8 150 2.48e-36 126
Msa0006680 MtrunA17_Chr1g0187351 81.818 66 12 0 18 83 1 66 4.00e-33 114
Msa0006680 MtrunA17_Chr4g0071601 38.674 181 91 4 5 172 8 181 5.32e-31 113
Msa0006680 MtrunA17_Chr3g0111841 86.441 59 8 0 15 73 2 60 1.15e-30 108
Msa0006680 MtrunA17_Chr3g0111831 72.131 61 17 0 16 76 11 71 3.83e-25 94.7
Msa0006680 MtrunA17_Chr1g0175601 45.946 111 57 2 9 118 2 110 2.44e-24 95.5
Msa0006680 MtrunA17_Chr1g0169761 40.559 143 67 4 9 135 2 142 4.00e-24 94.7
Msa0006680 MtrunA17_Chr4g0074101 33.529 170 86 5 9 162 2 160 6.67e-24 94.7
Msa0006680 MtrunA17_Chr8g0357771 38.217 157 79 3 9 162 2 143 1.49e-23 93.6
Msa0006680 MtrunA17_Chr8g0376821 44.643 112 57 3 9 118 2 110 2.23e-23 93.2
Msa0006680 MtrunA17_Chr1g0180591 45.536 112 56 3 9 118 2 110 2.97e-23 92.8
Msa0006680 MtrunA17_Chr1g0175611 43.363 113 62 1 9 121 2 112 6.22e-23 91.7
Msa0006680 MtrunA17_Chr8g0356071 36.620 142 82 2 9 147 2 138 1.06e-21 88.2
Msa0006680 MtrunA17_Chr4g0052061 41.509 106 60 1 9 114 2 105 3.14e-20 84.0
Msa0006680 MtrunA17_Chr3g0077501 52.941 68 32 0 9 76 2 69 4.47e-19 82.8
Msa0006680 MtrunA17_Chr8g0345001 33.544 158 92 3 8 159 17 167 5.52e-19 81.6
Msa0006680 MtrunA17_Chr4g0049901 57.576 66 28 0 10 75 29 94 9.15e-19 82.0
Msa0006680 MtrunA17_Chr2g0284911 32.558 172 100 4 9 170 17 182 2.03e-18 81.6
Msa0006680 MtrunA17_Chr3g0097101 46.429 84 45 0 3 86 11 94 2.45e-18 81.3
Msa0006680 MtrunA17_Chr4g0057151 50.685 73 36 0 10 82 3 75 3.11e-18 80.1
Msa0006680 MtrunA17_Chr4g0052081 41.509 106 61 1 9 113 2 107 3.25e-18 79.3
Msa0006680 MtrunA17_Chr5g0427401 51.471 68 33 0 9 76 2 69 1.17e-17 79.0
Msa0006680 MtrunA17_Chr3g0093131 34.266 143 77 4 26 159 36 170 1.75e-17 77.8
Msa0006680 MtrunA17_Chr8g0351041 47.436 78 41 0 10 87 3 80 2.33e-17 76.6
Msa0006680 MtrunA17_Chr6g0474371 49.275 69 34 1 9 76 2 70 2.33e-17 77.4
Msa0006680 MtrunA17_Chr8g0351051 51.471 68 33 0 9 76 2 69 2.71e-17 78.6
Msa0006680 MtrunA17_Chr5g0412271 30.405 148 86 2 9 156 2 132 3.58e-17 77.8
Msa0006680 MtrunA17_Chr8g0351031 27.928 222 134 7 10 220 3 209 4.59e-17 77.4
Msa0006680 MtrunA17_Chr8g0380021 51.471 68 33 0 9 76 18 85 4.72e-17 77.4
Msa0006680 MtrunA17_Chr3g0134451 42.308 104 57 3 9 111 2 103 6.20e-17 78.2
Msa0006680 MtrunA17_Chr2g0279821 48.529 68 35 0 9 76 2 69 9.46e-17 76.6
Msa0006680 MtrunA17_Chr4g0061691 47.826 69 35 1 9 76 2 70 1.20e-16 76.3
Msa0006680 MtrunA17_Chr5g0412461 48.529 68 35 0 9 76 2 69 1.45e-16 75.9
Msa0006680 MtrunA17_Chr1g0204111 50.000 68 34 0 9 76 18 85 1.78e-16 76.3
Msa0006680 MtrunA17_Chr7g0246431 38.182 110 66 1 10 119 3 110 2.16e-16 75.1
Msa0006680 MtrunA17_Chr4g0020221 51.471 68 33 0 9 76 2 69 5.52e-16 74.7
Msa0006680 MtrunA17_Chr4g0049541 47.059 68 36 0 9 76 2 69 7.16e-16 73.9
Msa0006680 MtrunA17_Chr8g0366231 36.792 106 63 2 9 114 2 103 7.91e-16 74.3
Msa0006680 MtrunA17_Chr6g0455511 49.275 69 34 1 9 76 2 70 1.08e-15 73.9
Msa0006680 MtrunA17_Chr7g0220111 49.275 69 34 1 9 76 2 70 1.15e-15 73.9
Msa0006680 MtrunA17_Chr5g0404951 50.000 70 33 1 9 76 2 71 2.08e-15 72.8
Msa0006680 MtrunA17_Chr1g0173161 52.459 61 29 0 9 69 2 62 2.10e-15 69.3
Msa0006680 MtrunA17_Chr5g0411691 48.529 68 35 0 9 76 2 69 2.18e-15 72.8
Msa0006680 MtrunA17_Chr5g0420081 45.070 71 36 1 9 79 2 69 2.93e-15 72.4
Msa0006680 MtrunA17_Chr5g0425191 56.604 53 23 0 9 61 2 54 3.02e-15 69.3
Msa0006680 MtrunA17_Chr2g0308251 47.826 69 36 0 9 77 2 70 3.48e-15 68.6
Msa0006680 MtrunA17_Chr5g0420091 47.826 69 35 1 9 76 2 70 7.41e-15 71.2
Msa0006680 MtrunA17_Chr4g0044071 52.632 57 27 0 9 65 2 58 9.77e-15 68.2
Msa0006680 MtrunA17_Chr8g0377561 53.571 56 26 0 9 64 2 57 1.50e-14 67.4
Msa0006680 MtrunA17_Chr7g0220121 43.478 69 38 1 9 76 2 70 1.82e-14 70.9
Msa0006680 MtrunA17_Chr1g0164791 47.143 70 35 1 9 76 2 71 1.89e-14 70.1
Msa0006680 MtrunA17_Chr3g0125241 44.286 70 37 1 9 76 27 96 2.44e-14 69.3
Msa0006680 MtrunA17_Chr1g0159661 46.970 66 34 1 9 74 2 66 2.86e-14 68.6
Msa0006680 MtrunA17_Chr5g0427921 49.123 57 29 0 9 65 2 58 2.92e-14 65.5
Msa0006680 MtrunA17_Chr4g0061671 50.877 57 28 0 9 65 2 58 3.20e-14 68.6
Msa0006680 MtrunA17_Chr7g0246381 52.632 57 27 0 9 65 2 58 3.77e-14 65.5
Msa0006680 MtrunA17_Chr3g0122251 47.826 69 35 1 9 76 2 70 6.01e-14 68.9
Msa0006680 MtrunA17_Chr3g0142191 47.619 63 33 0 9 71 2 64 1.31e-13 67.8
Msa0006680 MtrunA17_Chr4g0060841 28.488 172 107 7 9 167 2 170 1.62e-13 68.9
Msa0006680 MtrunA17_Chr4g0025531 28.926 242 136 8 5 230 5 226 2.06e-13 67.4
Msa0006680 MtrunA17_Chr2g0302091 30.303 165 83 7 7 159 36 180 2.29e-12 63.9
Msa0006680 MtrunA17_Chr5g0417661 42.029 69 34 1 9 77 57 119 4.98e-12 61.6
Msa0006680 MtrunA17_Chr4g0018421 30.872 149 86 6 9 156 2 134 9.48e-12 62.4
Msa0006680 MtrunA17_Chr1g0166611 42.857 77 43 1 20 95 17 93 9.19e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0006680 AT5G60440.1 54.255 188 79 3 5 189 3 186 9.56e-62 196
Msa0006680 AT2G24840.1 50.000 164 71 4 6 163 60 218 2.12e-45 152
Msa0006680 AT1G65360.1 39.207 227 123 6 5 225 3 220 4.33e-42 143
Msa0006680 AT1G01530.1 42.424 198 90 5 4 192 2 184 5.72e-42 143
Msa0006680 AT4G36590.1 46.061 165 83 2 5 163 3 167 4.26e-40 138
Msa0006680 AT2G34440.1 37.349 166 92 4 9 169 2 160 4.97e-28 105
Msa0006680 AT3G66656.1 41.985 131 71 2 9 134 2 132 1.60e-25 99.0
Msa0006680 AT3G04100.1 30.864 162 108 3 2 159 7 168 1.70e-22 91.7
Msa0006680 AT1G72350.1 33.553 152 68 3 9 160 43 161 3.79e-22 91.3
Msa0006680 AT2G45660.2 34.524 168 82 6 10 162 3 157 6.59e-20 83.6
Msa0006680 AT1G28460.1 31.902 163 99 4 5 161 4 160 2.34e-19 82.8
Msa0006680 AT4G22950.2 50.000 76 38 0 10 85 3 78 3.09e-19 82.4
Msa0006680 AT4G09960.2 46.512 86 45 1 9 93 2 87 3.32e-19 83.2
Msa0006680 AT2G45660.1 34.337 166 81 6 10 160 3 155 3.51e-19 83.2
Msa0006680 AT4G09960.1 46.512 86 45 1 9 93 2 87 4.32e-19 83.2
Msa0006680 AT4G09960.6 46.512 86 45 1 9 93 3 88 4.49e-19 83.2
Msa0006680 AT4G09960.5 46.512 86 45 1 9 93 12 97 5.71e-19 83.2
Msa0006680 AT4G18960.1 31.092 238 138 9 5 226 15 242 5.98e-19 83.2
Msa0006680 AT4G09960.3 46.512 86 45 1 9 93 28 113 7.91e-19 83.2
Msa0006680 AT2G45650.1 52.941 68 32 0 9 76 2 69 1.25e-18 82.4
Msa0006680 AT4G22950.3 50.000 76 38 0 10 85 3 78 1.35e-18 81.6
Msa0006680 AT4G22950.1 50.000 76 38 0 10 85 3 78 1.35e-18 81.6
Msa0006680 AT4G24540.1 35.811 148 78 4 9 156 2 132 1.55e-18 81.6
Msa0006680 AT4G09960.4 46.512 86 45 1 9 93 97 182 2.58e-18 82.8
Msa0006680 AT2G22540.3 38.346 133 72 4 9 132 2 133 1.66e-17 79.0
Msa0006680 AT2G22540.1 38.346 133 72 4 9 132 2 133 1.66e-17 79.0
Msa0006680 AT5G51870.2 53.731 67 31 0 10 76 3 69 1.97e-17 77.4
Msa0006680 AT5G51870.1 53.731 67 31 0 10 76 3 69 2.68e-17 77.8
Msa0006680 AT3G57230.2 47.059 68 36 0 9 76 2 69 4.26e-17 75.9
Msa0006680 AT5G51870.5 50.000 72 36 0 5 76 21 92 4.96e-17 77.0
Msa0006680 AT2G42830.2 47.368 76 40 0 1 76 9 84 5.88e-17 77.8
Msa0006680 AT2G42830.1 47.368 76 40 0 1 76 9 84 5.94e-17 77.8
Msa0006680 AT5G51870.4 53.731 67 31 0 10 76 3 69 6.24e-17 77.0
Msa0006680 AT3G58780.1 50.704 71 35 0 6 76 14 84 6.92e-17 77.4
Msa0006680 AT3G58780.5 50.704 71 35 0 6 76 20 90 7.11e-17 77.8
Msa0006680 AT5G51870.3 53.731 67 31 0 10 76 13 79 7.32e-17 77.0
Msa0006680 AT1G77980.1 38.095 105 64 1 9 112 2 106 8.76e-17 78.6
Msa0006680 AT1G22130.1 37.143 105 65 1 9 112 2 106 8.89e-17 78.6
Msa0006680 AT3G61120.1 51.471 68 33 0 9 76 2 69 9.02e-17 77.0
Msa0006680 AT5G10140.2 50.725 69 33 1 9 76 2 70 9.51e-17 75.5
Msa0006680 AT5G62165.14 49.254 67 34 0 10 76 3 69 9.92e-17 73.9
Msa0006680 AT4G37940.4 48.529 68 35 0 9 76 2 69 1.07e-16 76.3
Msa0006680 AT3G58780.4 50.704 71 35 0 6 76 14 84 1.11e-16 77.4
Msa0006680 AT5G10140.4 50.725 69 33 1 9 76 2 70 1.23e-16 75.5
Msa0006680 AT4G37940.1 48.529 68 35 0 9 76 2 69 1.29e-16 76.6
Msa0006680 AT4G37940.3 48.529 68 35 0 9 76 2 69 1.32e-16 75.5
Msa0006680 AT3G57390.3 50.000 68 34 0 9 76 2 69 1.32e-16 76.3
Msa0006680 AT5G62165.6 49.254 67 34 0 10 76 3 69 1.35e-16 74.7
Msa0006680 AT5G62165.9 49.254 67 34 0 10 76 3 69 1.35e-16 74.7
Msa0006680 AT5G62165.7 49.254 67 34 0 10 76 3 69 1.35e-16 74.7
Msa0006680 AT5G62165.8 49.254 67 34 0 10 76 3 69 1.35e-16 74.7
Msa0006680 AT5G62165.13 49.254 67 34 0 10 76 3 69 1.35e-16 74.7
Msa0006680 AT1G77950.3 47.368 76 38 2 9 83 2 76 1.39e-16 77.0
Msa0006680 AT1G77950.2 47.368 76 38 2 9 83 2 76 1.39e-16 77.0
Msa0006680 AT1G77950.1 47.368 76 38 2 9 83 2 76 1.39e-16 77.0
Msa0006680 AT1G77950.4 47.368 76 38 2 9 83 2 76 1.39e-16 77.0
Msa0006680 AT5G10140.1 50.725 69 33 1 9 76 2 70 1.54e-16 75.5
Msa0006680 AT5G62165.17 49.254 67 34 0 10 76 3 69 1.58e-16 74.7
Msa0006680 AT5G62165.12 49.254 67 34 0 10 76 3 69 1.58e-16 74.7
Msa0006680 AT5G62165.11 49.254 67 34 0 10 76 3 69 1.58e-16 74.7
Msa0006680 AT3G57230.1 47.059 68 36 0 9 76 2 69 1.69e-16 76.3
Msa0006680 AT3G57230.4 47.059 68 36 0 9 76 2 69 1.69e-16 76.3
Msa0006680 AT5G10140.3 50.725 69 33 1 9 76 2 70 1.72e-16 75.1
Msa0006680 AT3G54340.1 29.487 156 86 3 9 162 2 135 1.93e-16 76.3
Msa0006680 AT5G13790.2 43.011 93 44 1 9 101 2 85 2.01e-16 76.6
Msa0006680 AT1G29962.1 29.714 175 110 5 5 169 4 175 2.23e-16 75.1
Msa0006680 AT5G13790.1 51.471 68 33 0 9 76 2 69 2.64e-16 76.3
Msa0006680 AT3G57390.1 50.000 68 34 0 9 76 2 69 3.08e-16 75.9
Msa0006680 AT4G11880.2 48.611 72 36 1 10 80 3 74 3.56e-16 74.3
Msa0006680 AT4G11880.3 48.611 72 36 1 10 80 3 74 3.56e-16 74.3
Msa0006680 AT1G69120.2 40.659 91 51 1 9 99 2 89 4.01e-16 75.1
Msa0006680 AT5G51860.2 52.239 67 32 0 10 76 3 69 4.66e-16 74.3
Msa0006680 AT2G22630.1 47.059 68 36 0 9 76 2 69 4.91e-16 74.7
Msa0006680 AT2G22630.2 47.059 68 36 0 9 76 2 69 4.91e-16 74.7
Msa0006680 AT5G51860.1 52.239 67 32 0 10 76 3 69 5.71e-16 74.3
Msa0006680 AT5G62165.10 49.254 67 34 0 10 76 3 69 5.91e-16 73.9
Msa0006680 AT5G62165.4 49.254 67 34 0 10 76 3 69 5.91e-16 73.9
Msa0006680 AT5G62165.3 49.254 67 34 0 10 76 3 69 6.74e-16 74.3
Msa0006680 AT5G62165.1 49.254 67 34 0 10 76 3 69 6.74e-16 74.3
Msa0006680 AT5G62165.2 49.254 67 34 0 10 76 3 69 6.74e-16 74.3
Msa0006680 AT5G60910.1 49.296 71 33 1 9 79 2 69 7.21e-16 74.7
Msa0006680 AT4G11880.4 48.611 72 36 1 10 80 3 74 8.13e-16 74.3
Msa0006680 AT4G11880.1 48.611 72 36 1 10 80 3 74 8.13e-16 74.3
Msa0006680 AT1G69120.1 40.659 91 51 1 9 99 2 89 9.80e-16 74.7
Msa0006680 AT1G26310.1 47.826 69 35 1 9 76 2 70 1.17e-15 74.3
Msa0006680 AT3G30260.1 29.091 165 99 4 9 172 2 149 1.20e-15 74.3
Msa0006680 AT5G23260.4 44.330 97 46 3 2 90 9 105 1.67e-15 73.9
Msa0006680 AT5G23260.1 44.330 97 46 3 2 90 9 105 1.86e-15 73.9
Msa0006680 AT5G15800.1 49.275 69 34 1 9 76 2 70 2.91e-15 73.2
Msa0006680 AT5G20240.2 47.143 70 35 1 9 76 2 71 3.12e-15 70.9
Msa0006680 AT5G23260.3 45.455 88 42 2 9 90 2 89 3.35e-15 72.8
Msa0006680 AT5G23260.2 45.455 88 42 2 9 90 2 89 3.79e-15 72.8
Msa0006680 AT2G22540.2 37.594 133 68 5 9 132 2 128 4.48e-15 72.4
Msa0006680 AT5G15800.2 49.275 69 34 1 9 76 2 70 4.76e-15 72.8
Msa0006680 AT1G17310.1 51.899 79 36 1 8 86 47 123 5.14e-15 72.0
Msa0006680 AT1G17310.2 51.899 79 36 1 8 86 58 134 6.30e-15 72.0
Msa0006680 AT5G20240.1 47.143 70 35 1 9 76 2 71 6.79e-15 71.2
Msa0006680 AT2G14210.1 46.377 69 36 1 9 76 2 70 7.31e-15 71.6
Msa0006680 AT2G14210.2 46.377 69 36 1 9 76 2 70 1.01e-14 71.2
Msa0006680 AT3G58780.2 53.333 60 28 0 6 65 14 73 1.93e-14 70.9
Msa0006680 AT3G02310.2 47.826 69 35 1 9 76 2 70 2.29e-14 69.7
Msa0006680 AT5G65050.2 46.377 69 36 1 9 76 2 70 2.33e-14 69.3
Msa0006680 AT1G28450.1 29.518 166 102 6 5 161 4 163 2.35e-14 69.3
Msa0006680 AT3G58780.3 53.333 60 28 0 6 65 14 73 2.45e-14 70.9
Msa0006680 AT5G65050.5 46.377 69 36 1 9 76 2 70 3.61e-14 68.9
Msa0006680 AT5G65050.3 46.377 69 36 1 9 76 2 70 3.89e-14 68.9
Msa0006680 AT5G65050.1 46.377 69 36 1 9 76 2 70 4.02e-14 68.9
Msa0006680 AT2G03710.3 47.143 70 35 2 9 76 2 71 4.15e-14 68.9
Msa0006680 AT3G02310.1 47.826 69 35 1 9 76 2 70 5.14e-14 69.7
Msa0006680 AT5G65060.3 46.377 69 36 1 9 76 2 70 5.81e-14 68.6
Msa0006680 AT5G65060.2 46.377 69 36 1 9 76 2 70 6.33e-14 68.2
Msa0006680 AT5G65060.1 46.377 69 36 1 9 76 2 70 8.34e-14 68.2
Msa0006680 AT2G03710.2 47.143 70 35 2 9 76 2 71 9.27e-14 68.9
Msa0006680 AT2G03710.1 47.143 70 35 2 9 76 2 71 9.86e-14 68.9
Msa0006680 AT1G24260.2 46.377 69 36 1 9 76 2 70 1.16e-13 68.9
Msa0006680 AT1G71692.1 44.286 70 38 1 9 77 2 71 1.18e-13 68.2
Msa0006680 AT1G24260.3 53.571 56 26 0 9 64 2 57 1.19e-13 68.6
Msa0006680 AT1G24260.1 46.377 69 36 1 9 76 2 70 1.20e-13 68.6
Msa0006680 AT1G47760.1 33.333 111 60 2 9 119 2 98 3.07e-13 66.2
Msa0006680 AT5G65070.4 42.029 69 39 1 9 76 2 70 3.16e-13 65.5
Msa0006680 AT5G65070.1 42.029 69 39 1 9 76 2 70 6.20e-13 65.9
Msa0006680 AT5G65070.5 42.029 69 39 1 9 76 2 70 9.79e-13 65.5
Msa0006680 AT5G65070.2 42.029 69 39 1 9 76 2 70 1.12e-12 65.9
Msa0006680 AT5G65070.3 47.368 57 30 0 9 65 2 58 5.05e-12 63.9
Msa0006680 AT1G69540.1 37.778 90 52 3 9 95 2 90 2.01e-11 63.2
Msa0006680 AT4G37435.1 40.278 72 42 1 9 79 2 73 2.49e-11 61.2
Msa0006680 AT1G69540.2 37.778 90 52 3 9 95 2 90 2.63e-11 62.8
Msa0006680 AT2G26320.1 40.000 70 40 1 9 76 18 87 3.41e-11 58.9
Msa0006680 AT1G18750.1 26.238 202 125 9 9 188 2 201 3.44e-11 62.8
Msa0006680 AT1G18750.4 26.238 202 125 9 9 188 2 201 3.64e-11 62.4
Msa0006680 AT1G18750.3 37.333 75 45 1 9 81 2 76 4.29e-11 62.4
Msa0006680 AT5G65080.3 42.029 69 39 1 9 76 9 77 4.40e-11 60.5
Msa0006680 AT2G03060.2 39.286 84 48 3 9 90 2 84 6.85e-11 61.6
Msa0006680 AT5G65080.2 43.548 62 35 0 1 62 1 62 7.29e-11 60.1
Msa0006680 AT2G03060.3 39.286 84 48 3 9 90 2 84 7.51e-11 61.6
Msa0006680 AT2G03060.7 39.286 84 48 3 9 90 2 84 7.51e-11 61.6
Msa0006680 AT2G03060.1 39.286 84 48 3 9 90 2 84 7.51e-11 61.6

Find 50 sgRNAs with CRISPR-Local

Find 74 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGTTTGGTTTCAACAATA+TGG 0.234944 1_1:-9657793 Msa0006680:CDS
ATTTGAGTTTGCGGAGGATT+TGG 0.294464 1_1:+9657858 None:intergenic
TGGTGGGCTGGTTCCGTTGA+TGG 0.307687 1_1:-9658044 Msa0006680:CDS
ATTGCATGGTACCATTGTTT+TGG 0.337688 1_1:+9658201 None:intergenic
AGGCAACCGAGACTCAATTT+TGG 0.344827 1_1:-9658064 Msa0006680:CDS
TTGTTTGGTTTCAACAATAT+GGG 0.345119 1_1:-9657792 Msa0006680:CDS
ATGTTGCAACCTCATTTGTT+TGG 0.384083 1_1:-9657807 Msa0006680:CDS
GACTCAGATCAACCAGCTAT+TGG 0.396679 1_1:-9658129 Msa0006680:CDS
GGTGGGCTGGTTCCGTTGAT+GGG 0.444286 1_1:-9658043 Msa0006680:CDS
TCTTCTCATTGTCCAATAGC+TGG 0.447890 1_1:+9658117 None:intergenic
TGCTAATAGACTTGTAATCC+AGG 0.466664 1_1:-9657952 Msa0006680:CDS
TTCCGTTGATGGGATGAATA+TGG 0.470577 1_1:-9658033 Msa0006680:CDS
ATGATCGAGAGGCATGTTAG+AGG 0.481598 1_1:+9657884 None:intergenic
TCTCGGTTGCCTTGCGCAAG+TGG 0.488530 1_1:+9658075 None:intergenic
AACAAATGAGGTTGCAACAT+AGG 0.496587 1_1:+9657810 None:intergenic
GGGCTCAGATCAAAAGAATC+CGG 0.505206 1_1:+9657746 None:intergenic
ATCTATGACCGTATCAACAT+TGG 0.506900 1_1:+9658247 None:intergenic
GCTGGAAATATTTGAGTTTG+CGG 0.509101 1_1:+9657849 None:intergenic
AGGTTTGAGTAGGAGCGCCC+TGG 0.514885 1_1:+9657934 None:intergenic
ACAGAGAGTGCAAAGCTCGC+TGG 0.525634 1_1:+9658331 None:intergenic
ACAAATGAGGTTGCAACATA+GGG 0.527904 1_1:+9657811 None:intergenic
TCTATGACCGTATCAACATT+GGG 0.542196 1_1:+9658248 None:intergenic
TGGCCAACCCAATGTTGATA+CGG 0.545005 1_1:-9658255 Msa0006680:CDS
CTTTCTCGAAGCGCCGTAGT+GGG 0.553366 1_1:-9658367 Msa0006680:CDS
TGTTTGGTTTCAACAATATG+GGG 0.556331 1_1:-9657791 Msa0006680:CDS
TTGTTGAAACCAAACAAATG+AGG 0.558095 1_1:+9657798 None:intergenic
GGAGGTGGATATGGACCCTC+CGG 0.560213 1_1:-9657765 Msa0006680:CDS
ACTTTCTCGAAGCGCCGTAG+TGG 0.571963 1_1:-9658368 Msa0006680:CDS
GCTCGCGCACGTTGGCACTA+CGG 0.576720 1_1:+9658165 None:intergenic
AGCGAGCTTTGCACTCTCTG+TGG 0.578965 1_1:-9658329 Msa0006680:CDS
AATGAAAATACCTTCTCCCC+AGG 0.587583 1_1:+9658278 None:intergenic
GGCCATATTCATCCCATCAA+CGG 0.588307 1_1:+9658031 None:intergenic
AGCCCACCAAAATTGAGTCT+CGG 0.589062 1_1:+9658058 None:intergenic
AGAGCTGAGCCACTTGCGCA+AGG 0.589828 1_1:-9658084 Msa0006680:CDS
CTTCAACCATGTCAAGTGGA+AGG 0.599332 1_1:-9658454 None:intergenic
TGACCGTATCAACATTGGGT+TGG 0.600758 1_1:+9658252 None:intergenic
TGTGCTTCAACCATGTCAAG+TGG 0.601126 1_1:-9658458 None:intergenic
GTTTGGTTTCAACAATATGG+GGG 0.607401 1_1:-9657790 Msa0006680:CDS
CTTTCTTGAAGAGCCCACTA+CGG 0.610979 1_1:+9658354 None:intergenic
GGATTTGGTTGATGATCGAG+AGG 0.624852 1_1:+9657873 None:intergenic
GGAAATATTTGAGTTTGCGG+AGG 0.627262 1_1:+9657852 None:intergenic
GCTAATAGACTTGTAATCCA+GGG 0.635406 1_1:-9657951 Msa0006680:CDS
TTTGGTTTCAACAATATGGG+GGG 0.638238 1_1:-9657789 Msa0006680:CDS
TGGTACCATGCAATTCATTG+AGG 0.638950 1_1:-9658192 Msa0006680:CDS
CGAGTCCCACCCCAAAACAA+TGG 0.639467 1_1:-9658212 Msa0006680:CDS
GTGAGCCTCAATGAATTGCA+TGG 0.640763 1_1:+9658187 None:intergenic
AATATTGAGCTCGCGCACGT+TGG 0.641144 1_1:+9658157 None:intergenic
CTCAGATCAAAAGAATCCGG+AGG 0.653378 1_1:+9657749 None:intergenic
TCAGATCAAAAGAATCCGGA+GGG 0.678771 1_1:+9657750 None:intergenic
TCAAGTGGAAGGAAAAGCCG+AGG 0.705721 1_1:-9658443 Msa0006680:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTCATCTCAATCTTT+TGG + chr1_1:9657787-9657806 None:intergenic 20.0%
!!! CTTTTTGAAAAATTCAAGTT+GGG + chr1_1:9658194-9658213 None:intergenic 20.0%
!!! CCTTTTTGAAAAATTCAAGT+TGG + chr1_1:9658195-9658214 None:intergenic 25.0%
!!! CCAACTTGAATTTTTCAAAA+AGG - chr1_1:9658192-9658211 Msa0006680:CDS 25.0%
!!! TGAATTTTTCAAAAAGGCTT+TGG - chr1_1:9658198-9658217 Msa0006680:CDS 25.0%
! ATTTCCAACAAAAAATGGAA+AGG + chr1_1:9658290-9658309 None:intergenic 25.0%
!!! TTTCCATTTTTTGTTGGAAA+TGG - chr1_1:9658289-9658308 Msa0006680:CDS 25.0%
!! TTTGTTTGGTTTCAACAATA+TGG - chr1_1:9658408-9658427 Msa0006680:CDS 25.0%
!! TTGTTTGGTTTCAACAATAT+GGG - chr1_1:9658409-9658428 Msa0006680:CDS 25.0%
!! ATTTTTCAAAAAGGCTTTGG+AGG - chr1_1:9658201-9658220 Msa0006680:CDS 30.0%
AAAAATGGAAAGGTTTGAGT+AGG + chr1_1:9658280-9658299 None:intergenic 30.0%
!!! CAAACCTTTCCATTTTTTGT+TGG - chr1_1:9658283-9658302 Msa0006680:CDS 30.0%
GAACCATTTCCAACAAAAAA+TGG + chr1_1:9658295-9658314 None:intergenic 30.0%
TTGTTGAAACCAAACAAATG+AGG + chr1_1:9658406-9658425 None:intergenic 30.0%
! TGTTTGGTTTCAACAATATG+GGG - chr1_1:9658410-9658429 Msa0006680:CDS 30.0%
TCTATGACCGTATCAACATT+GGG + chr1_1:9657956-9657975 None:intergenic 35.0%
ATCTATGACCGTATCAACAT+TGG + chr1_1:9657957-9657976 None:intergenic 35.0%
! TTGCATGGTACCATTGTTTT+GGG + chr1_1:9658002-9658021 None:intergenic 35.0%
! ATTGCATGGTACCATTGTTT+TGG + chr1_1:9658003-9658022 None:intergenic 35.0%
TGCTAATAGACTTGTAATCC+AGG - chr1_1:9658249-9658268 Msa0006680:CDS 35.0%
GCTAATAGACTTGTAATCCA+GGG - chr1_1:9658250-9658269 Msa0006680:CDS 35.0%
! GCTGGAAATATTTGAGTTTG+CGG + chr1_1:9658355-9658374 None:intergenic 35.0%
ACAAATGAGGTTGCAACATA+GGG + chr1_1:9658393-9658412 None:intergenic 35.0%
AACAAATGAGGTTGCAACAT+AGG + chr1_1:9658394-9658413 None:intergenic 35.0%
ATGTTGCAACCTCATTTGTT+TGG - chr1_1:9658394-9658413 Msa0006680:CDS 35.0%
! GTTTGGTTTCAACAATATGG+GGG - chr1_1:9658411-9658430 Msa0006680:CDS 35.0%
! TTTGGTTTCAACAATATGGG+GGG - chr1_1:9658412-9658431 Msa0006680:CDS 35.0%
AATGAAAATACCTTCTCCCC+AGG + chr1_1:9657926-9657945 None:intergenic 40.0%
!!! GGGGAGAAGGTATTTTCATT+TGG - chr1_1:9657926-9657945 Msa0006680:CDS 40.0%
!! TGCATGGTACCATTGTTTTG+GGG + chr1_1:9658001-9658020 None:intergenic 40.0%
TGGTACCATGCAATTCATTG+AGG - chr1_1:9658009-9658028 Msa0006680:CDS 40.0%
TCTTCTCATTGTCCAATAGC+TGG + chr1_1:9658087-9658106 None:intergenic 40.0%
!! AACCGAGACTCAATTTTGGT+GGG - chr1_1:9658141-9658160 Msa0006680:CDS 40.0%
! TTCCGTTGATGGGATGAATA+TGG - chr1_1:9658168-9658187 Msa0006680:CDS 40.0%
! ATTTGAGTTTGCGGAGGATT+TGG + chr1_1:9658346-9658365 None:intergenic 40.0%
! GGAAATATTTGAGTTTGCGG+AGG + chr1_1:9658352-9658371 None:intergenic 40.0%
!! GGGTTCTGAAAAAATTGTGC+TGG + chr1_1:9658373-9658392 None:intergenic 40.0%
! TCTCAATCTTTTGGCGACCT+CGG + chr1_1:9657778-9657797 None:intergenic 45.0%
CTTTCTTGAAGAGCCCACTA+CGG + chr1_1:9657850-9657869 None:intergenic 45.0%
!! CTCTCGTTGTTTTCTCACCT+GGG - chr1_1:9657906-9657925 Msa0006680:CDS 45.0%
!! TCTCGTTGTTTTCTCACCTG+GGG - chr1_1:9657907-9657926 Msa0006680:CDS 45.0%
TGGCCAACCCAATGTTGATA+CGG - chr1_1:9657946-9657965 Msa0006680:CDS 45.0%
TGACCGTATCAACATTGGGT+TGG + chr1_1:9657952-9657971 None:intergenic 45.0%
!!! TGGTACCATTGTTTTGGGGT+GGG + chr1_1:9657997-9658016 None:intergenic 45.0%
!!! ATGGTACCATTGTTTTGGGG+TGG + chr1_1:9657998-9658017 None:intergenic 45.0%
GTGAGCCTCAATGAATTGCA+TGG + chr1_1:9658017-9658036 None:intergenic 45.0%
GACTCAGATCAACCAGCTAT+TGG - chr1_1:9658072-9658091 Msa0006680:CDS 45.0%
! AGGCAACCGAGACTCAATTT+TGG - chr1_1:9658137-9658156 Msa0006680:CDS 45.0%
! CAACCGAGACTCAATTTTGG+TGG - chr1_1:9658140-9658159 Msa0006680:CDS 45.0%
AGCCCACCAAAATTGAGTCT+CGG + chr1_1:9658146-9658165 None:intergenic 45.0%
GGCCATATTCATCCCATCAA+CGG + chr1_1:9658173-9658192 None:intergenic 45.0%
! ATGATCGAGAGGCATGTTAG+AGG + chr1_1:9658320-9658339 None:intergenic 45.0%
!! GGATTTGGTTGATGATCGAG+AGG + chr1_1:9658331-9658350 None:intergenic 45.0%
TCAAGTGGAAGGAAAAGCCG+AGG - chr1_1:9657758-9657777 Msa0006680:CDS 50.0%
!! GCTCTCGTTGTTTTCTCACC+TGG - chr1_1:9657905-9657924 Msa0006680:CDS 50.0%
! TGTTTTCTCACCTGGGGAGA+AGG - chr1_1:9657913-9657932 Msa0006680:CDS 50.0%
AATATTGAGCTCGCGCACGT+TGG + chr1_1:9658047-9658066 None:intergenic 50.0%
!! GAGACTCAATTTTGGTGGGC+TGG - chr1_1:9658145-9658164 Msa0006680:CDS 50.0%
GGTTTCAACAATATGGGGGG+AGG - chr1_1:9658415-9658434 Msa0006680:CDS 50.0%
TTCAACAATATGGGGGGAGG+AGG - chr1_1:9658418-9658437 Msa0006680:CDS 50.0%
!! ACTTTCTCGAAGCGCCGTAG+TGG - chr1_1:9657833-9657852 Msa0006680:CDS 55.0%
!! CTTTCTCGAAGCGCCGTAGT+GGG - chr1_1:9657834-9657853 Msa0006680:CDS 55.0%
! ACAGAGAGTGCAAAGCTCGC+TGG + chr1_1:9657873-9657892 None:intergenic 55.0%
AGCGAGCTTTGCACTCTCTG+TGG - chr1_1:9657872-9657891 Msa0006680:CDS 55.0%
CGAGTCCCACCCCAAAACAA+TGG - chr1_1:9657989-9658008 Msa0006680:CDS 55.0%
AACAATATGGGGGGAGGAGG+TGG - chr1_1:9658421-9658440 Msa0006680:CDS 55.0%
AGAGCTGAGCCACTTGCGCA+AGG - chr1_1:9658117-9658136 Msa0006680:CDS 60.0%
TCTCGGTTGCCTTGCGCAAG+TGG + chr1_1:9658129-9658148 None:intergenic 60.0%
!! TGGTGGGCTGGTTCCGTTGA+TGG - chr1_1:9658157-9658176 Msa0006680:CDS 60.0%
!! GGTGGGCTGGTTCCGTTGAT+GGG - chr1_1:9658158-9658177 Msa0006680:CDS 60.0%
!! AGGTTTGAGTAGGAGCGCCC+TGG + chr1_1:9658270-9658289 None:intergenic 60.0%
ATGGGGGGAGGAGGTGGATA+TGG - chr1_1:9658427-9658446 Msa0006680:CDS 60.0%
GGAGGTGGATATGGACCCTC+CGG - chr1_1:9658436-9658455 Msa0006680:CDS 60.0%
GCTCGCGCACGTTGGCACTA+CGG + chr1_1:9658039-9658058 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 9657755 9658468 9657755 ID=Msa0006680;Name=Msa0006680
chr1_1 mRNA 9657755 9658468 9657755 ID=Msa0006680-mRNA-1;Parent=Msa0006680;Name=Msa0006680-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|-1|0|1|-1|1|1|0|237
chr1_1 exon 9657755 9658468 9657755 ID=Msa0006680-mRNA-1:exon:3450;Parent=Msa0006680-mRNA-1
chr1_1 CDS 9657755 9658468 9657755 ID=Msa0006680-mRNA-1:cds;Parent=Msa0006680-mRNA-1
Gene Sequence

>Msa0006680

ATGTCAAGTGGAAGGAAAAGCCGAGGTCGCCAAAAGATTGAGATGAAAAAAATGAGCAACGAGAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCCAGCGAGCTTTGCACTCTCTGTGGTGCAGATGTTGCTCTCGTTGTTTTCTCACCTGGGGAGAAGGTATTTTCATTTGGCCAACCCAATGTTGATACGGTCATAGATCGTTATCTCTCTCGAGTCCCACCCCAAAACAATGGTACCATGCAATTCATTGAGGCTCACCGTAGTGCCAACGTGCGCGAGCTCAATATTCAGTTGACTCAGATCAACCAGCTATTGGACAATGAGAAGAAACGCGCTGAAGAGCTGAGCCACTTGCGCAAGGCAACCGAGACTCAATTTTGGTGGGCTGGTTCCGTTGATGGGATGAATATGGCCCAACTTGAATTTTTCAAAAAGGCTTTGGAGGAGATTAAGAAACTTGTTGTACATCATGCTAATAGACTTGTAATCCAGGGCGCTCCTACTCAAACCTTTCCATTTTTTGTTGGAAATGGTTCATCCTCTAACATGCCTCTCGATCATCAACCAAATCCTCCGCAAACTCAAATATTTCCAGCACAATTTTTTCAGAACCCTATGTTGCAACCTCATTTGTTTGGTTTCAACAATATGGGGGGAGGAGGTGGATATGGACCCTCCGGATTCTTTTGA
Protein sequence

>Msa0006680

MSSGRKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGADVALVVFSPGEKVFSFGQPNVDTVIDRYLSRVPPQNNGTMQFIEAHRSANVRELNIQLTQINQLLDNEKKRAEELSHLRKATETQFWWAGSVDGMNMAQLEFFKKALEEIKKLVVHHANRLVIQGAPTQTFPFFVGNGSSSNMPLDHQPNPPQTQIFPAQFFQNPMLQPHLFGFNNMGGGGGYGPSGFF*