Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0007330 | sp|Q9LVS0|KUA1_ARATH | 76.812 | 69 | 16 | 0 | 26 | 94 | 95 | 163 | 5.31e-36 | 128 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0007330 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0007330 | MtrunA17_Chr3g0092621 | 83.333 | 72 | 12 | 0 | 23 | 94 | 80 | 151 | 3.59e-38 | 125 |
| Msa0007330 | MtrunA17_Chr4g0055931 | 73.239 | 71 | 19 | 0 | 26 | 96 | 94 | 164 | 1.32e-36 | 125 |
| Msa0007330 | MtrunA17_Chr2g0331031 | 73.913 | 69 | 18 | 0 | 26 | 94 | 108 | 176 | 7.81e-36 | 124 |
| Msa0007330 | MtrunA17_Chr6g0488471 | 78.788 | 66 | 14 | 0 | 26 | 91 | 96 | 161 | 5.03e-35 | 120 |
| Msa0007330 | MtrunA17_Chr5g0415191 | 87.143 | 70 | 9 | 0 | 26 | 95 | 101 | 170 | 4.79e-34 | 119 |
| Msa0007330 | MtrunA17_Chr4g0059701 | 95.714 | 70 | 3 | 0 | 26 | 95 | 83 | 152 | 2.27e-32 | 114 |
| Msa0007330 | MtrunA17_Chr8g0389241 | 61.628 | 86 | 27 | 2 | 6 | 91 | 89 | 168 | 3.69e-32 | 113 |
| Msa0007330 | MtrunA17_Chr4g0062741 | 66.667 | 75 | 25 | 0 | 26 | 100 | 137 | 211 | 6.35e-32 | 113 |
| Msa0007330 | MtrunA17_Chr5g0429521 | 69.118 | 68 | 21 | 0 | 26 | 93 | 131 | 198 | 7.09e-31 | 110 |
| Msa0007330 | MtrunA17_Chr1g0162081 | 70.588 | 68 | 20 | 0 | 26 | 93 | 121 | 188 | 1.04e-30 | 110 |
| Msa0007330 | MtrunA17_Chr3g0104071 | 69.118 | 68 | 21 | 0 | 26 | 93 | 146 | 213 | 1.10e-30 | 110 |
| Msa0007330 | MtrunA17_Chr1g0210471 | 56.977 | 86 | 37 | 0 | 8 | 93 | 105 | 190 | 4.18e-30 | 107 |
| Msa0007330 | MtrunA17_Chr7g0241761 | 68.657 | 67 | 21 | 0 | 26 | 92 | 139 | 205 | 1.23e-29 | 107 |
| Msa0007330 | MtrunA17_Chr6g0452791 | 75.000 | 60 | 15 | 0 | 27 | 86 | 80 | 139 | 3.53e-27 | 97.8 |
| Msa0007330 | MtrunA17_Chr3g0135671 | 65.217 | 69 | 21 | 1 | 26 | 91 | 90 | 158 | 1.08e-26 | 98.2 |
| Msa0007330 | MtrunA17_Chr5g0436501 | 63.889 | 72 | 24 | 1 | 26 | 95 | 124 | 195 | 4.82e-26 | 97.4 |
| Msa0007330 | MtrunA17_Chr5g0409841 | 51.515 | 66 | 30 | 1 | 29 | 92 | 94 | 159 | 2.03e-19 | 79.3 |
| Msa0007330 | MtrunA17_Chr5g0440741 | 47.436 | 78 | 35 | 2 | 29 | 100 | 102 | 179 | 1.08e-18 | 78.2 |
| Msa0007330 | MtrunA17_Chr5g0440731 | 46.250 | 80 | 37 | 2 | 27 | 100 | 105 | 184 | 1.53e-18 | 77.8 |
| Msa0007330 | MtrunA17_Chr5g0409831 | 62.500 | 48 | 18 | 0 | 27 | 74 | 77 | 124 | 6.27e-17 | 72.8 |
| Msa0007330 | MtrunA17_Chr8g0365011 | 48.718 | 78 | 26 | 2 | 29 | 92 | 94 | 171 | 7.20e-17 | 73.2 |
| Msa0007330 | MtrunA17_Chr8g0364731 | 59.322 | 59 | 22 | 1 | 36 | 92 | 10 | 68 | 1.55e-16 | 70.9 |
| Msa0007330 | MtrunA17_Chr1g0192061 | 43.678 | 87 | 43 | 3 | 13 | 96 | 49 | 132 | 1.35e-15 | 68.2 |
| Msa0007330 | MtrunA17_Chr3g0113121 | 47.222 | 72 | 31 | 1 | 29 | 93 | 97 | 168 | 2.13e-13 | 63.2 |
| Msa0007330 | MtrunA17_Chr5g0432921 | 49.254 | 67 | 31 | 2 | 29 | 93 | 115 | 180 | 3.11e-13 | 62.8 |
| Msa0007330 | MtrunA17_Chr5g0432941 | 42.683 | 82 | 44 | 2 | 14 | 93 | 100 | 180 | 3.45e-13 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0007330 | AT5G47390.1 | 76.812 | 69 | 16 | 0 | 26 | 94 | 95 | 163 | 5.40e-37 | 128 |
| Msa0007330 | AT1G49010.1 | 73.529 | 68 | 18 | 0 | 26 | 93 | 133 | 200 | 5.75e-34 | 119 |
| Msa0007330 | AT1G70000.1 | 84.286 | 70 | 11 | 0 | 26 | 95 | 97 | 166 | 1.10e-30 | 109 |
| Msa0007330 | AT1G70000.2 | 84.286 | 70 | 11 | 0 | 26 | 95 | 97 | 166 | 1.10e-30 | 109 |
| Msa0007330 | AT5G61620.1 | 65.217 | 69 | 24 | 0 | 26 | 94 | 107 | 175 | 2.33e-30 | 109 |
| Msa0007330 | AT5G04760.1 | 69.118 | 68 | 21 | 0 | 26 | 93 | 98 | 165 | 4.05e-30 | 107 |
| Msa0007330 | AT5G08520.1 | 69.118 | 68 | 21 | 0 | 26 | 93 | 117 | 184 | 4.30e-30 | 108 |
| Msa0007330 | AT5G56840.1 | 68.116 | 69 | 21 | 1 | 26 | 93 | 90 | 158 | 4.61e-30 | 107 |
| Msa0007330 | AT2G38090.1 | 69.118 | 68 | 21 | 0 | 26 | 93 | 140 | 207 | 6.58e-30 | 108 |
| Msa0007330 | AT5G58900.1 | 69.118 | 68 | 21 | 0 | 26 | 93 | 140 | 207 | 8.71e-30 | 107 |
| Msa0007330 | AT3G16350.1 | 75.362 | 69 | 17 | 0 | 26 | 94 | 136 | 204 | 3.31e-29 | 108 |
| Msa0007330 | AT1G74840.2 | 85.714 | 70 | 10 | 0 | 26 | 95 | 95 | 164 | 3.26e-28 | 102 |
| Msa0007330 | AT1G19000.2 | 80.000 | 75 | 15 | 0 | 26 | 100 | 101 | 175 | 3.37e-28 | 103 |
| Msa0007330 | AT1G19000.1 | 80.000 | 75 | 15 | 0 | 26 | 100 | 101 | 175 | 3.37e-28 | 103 |
| Msa0007330 | AT1G74840.1 | 85.714 | 70 | 10 | 0 | 26 | 95 | 95 | 164 | 4.22e-28 | 102 |
| Msa0007330 | AT5G01200.1 | 64.706 | 68 | 24 | 0 | 26 | 93 | 145 | 212 | 7.70e-27 | 99.8 |
| Msa0007330 | AT5G05790.2 | 63.235 | 68 | 25 | 0 | 26 | 93 | 130 | 197 | 8.15e-26 | 97.1 |
| Msa0007330 | AT5G05790.1 | 63.235 | 68 | 25 | 0 | 26 | 93 | 130 | 197 | 8.15e-26 | 97.1 |
| Msa0007330 | AT3G11280.2 | 63.235 | 68 | 25 | 0 | 26 | 93 | 126 | 193 | 8.61e-26 | 96.7 |
| Msa0007330 | AT3G11280.1 | 63.235 | 68 | 25 | 0 | 26 | 93 | 126 | 193 | 8.61e-26 | 96.7 |
| Msa0007330 | AT4G09450.1 | 52.000 | 75 | 36 | 0 | 25 | 99 | 89 | 163 | 3.28e-22 | 86.3 |
| Msa0007330 | AT3G10580.2 | 58.209 | 67 | 26 | 1 | 26 | 92 | 94 | 158 | 4.84e-22 | 87.0 |
| Msa0007330 | AT3G10580.1 | 58.209 | 67 | 26 | 1 | 26 | 92 | 94 | 158 | 7.01e-22 | 87.0 |
| Msa0007330 | AT5G23650.1 | 58.209 | 67 | 28 | 0 | 26 | 92 | 119 | 185 | 8.23e-22 | 87.4 |
| Msa0007330 | AT3G10590.1 | 50.725 | 69 | 33 | 1 | 28 | 96 | 112 | 179 | 1.82e-18 | 76.6 |
Find 17 sgRNAs with CRISPR-Local
Find 92 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTCATTATGTTAGTCCTTT+AGG | 0.224788 | 1_1:+10483349 | Msa0007330:intron |
| TTGGTTGGATTGGAGAAAGT+GGG | 0.463944 | 1_1:+10482921 | Msa0007330:CDS |
| AGAAAGTGGGAAAAGGTGAT+TGG | 0.482958 | 1_1:+10482934 | Msa0007330:CDS |
| TTTGGTTGGATTGGAGAAAG+TGG | 0.487039 | 1_1:+10482920 | Msa0007330:CDS |
| GGTGGTGATATCAAAGAGAC+TGG | 0.540239 | 1_1:-10483066 | None:intergenic |
| GGATTGGAGAAAGTGGGAAA+AGG | 0.562648 | 1_1:+10482927 | Msa0007330:CDS |
| TATCAAAGAGACTGGATCTA+CGG | 0.592657 | 1_1:-10483058 | None:intergenic |
| TTGTGCTCTTCCTCAGTCCA+CGG | 0.594809 | 1_1:-10482891 | None:intergenic |
| GTGATTGGAGAGGAATCTCA+AGG | 0.619264 | 1_1:+10482949 | Msa0007330:CDS |
| GTGGGAAAAGGTGATTGGAG+AGG | 0.624127 | 1_1:+10482939 | Msa0007330:CDS |
| TGAATGGATCAGGGATTCCG+TGG | 0.626840 | 1_1:+10482874 | Msa0007330:intron |
| GGCGATTGAGATTACTTCGG+CGG | 0.629813 | 1_1:-10483031 | None:intergenic |
| GCATGACTTGCAACATGCGT+AGG | 0.636946 | 1_1:-10482993 | None:intergenic |
| CTTTGATATCACCACCGACA+CGG | 0.638033 | 1_1:+10483073 | Msa0007330:CDS |
| GACGGCGATTGAGATTACTT+CGG | 0.641222 | 1_1:-10483034 | None:intergenic |
| ATCAGGGATTCCGTGGACTG+AGG | 0.660333 | 1_1:+10482881 | Msa0007330:intron |
| AGAGACTGGATCTACGGCGA+CGG | 0.684123 | 1_1:-10483052 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACTAATTGAATACAAATTT+AGG | - | chr1_1:10483147-10483166 | None:intergenic | 15.0% |
| !! | TAATCAATAAAGTAGTATTA+TGG | + | chr1_1:10483169-10483188 | Msa0007330:intron | 15.0% |
| !!! | AATTTTCTCTGTTATTTTTT+TGG | + | chr1_1:10483211-10483230 | Msa0007330:intron | 15.0% |
| !!! | ATTTTGTATTATAAACCTAA+AGG | - | chr1_1:10483367-10483386 | None:intergenic | 15.0% |
| !!! | TTAAGTCATTCATTTTTAAA+TGG | + | chr1_1:10483440-10483459 | Msa0007330:intron | 15.0% |
| !! | AATACTCTAAATTAAACATA+AGG | - | chr1_1:10484151-10484170 | None:intergenic | 15.0% |
| !! | AGTATTTCTTATAATATGTA+TGG | + | chr1_1:10484165-10484184 | Msa0007330:intron | 15.0% |
| !! | ATTTCAATCAATTCAAACAA+AGG | - | chr1_1:10482824-10482843 | None:intergenic | 20.0% |
| !!! | TGTTATTGATTTTCTTTGAA+TGG | + | chr1_1:10482858-10482877 | Msa0007330:intron | 20.0% |
| !! | AAGTGATTCATTTGTTTAAA+TGG | + | chr1_1:10483327-10483346 | Msa0007330:intron | 20.0% |
| !!! | TCTTATTTGAATTGTATTCA+TGG | + | chr1_1:10483824-10483843 | Msa0007330:intron | 20.0% |
| !! | AATCAGAAAGAAATAATGTT+TGG | - | chr1_1:10483877-10483896 | None:intergenic | 20.0% |
| ! | AATATCTACTTAAAATCCTG+AGG | - | chr1_1:10482673-10482692 | None:intergenic | 25.0% |
| !! | TCTCACATTTAAATGGTTTT+TGG | + | chr1_1:10482729-10482748 | Msa0007330:intron | 25.0% |
| !! | TATTAAGACTTTTGCCATTA+AGG | + | chr1_1:10483266-10483285 | Msa0007330:intron | 25.0% |
| ! | CAATAGTTCAAATTCCTTAA+TGG | - | chr1_1:10483283-10483302 | None:intergenic | 25.0% |
| ! | AGGAATTTGAACTATTGTAA+AGG | + | chr1_1:10483286-10483305 | Msa0007330:intron | 25.0% |
| ! | TTACAAATTCAATGTAGCTA+GGG | - | chr1_1:10483406-10483425 | None:intergenic | 25.0% |
| ! | AAAGCTACAAATTCAACTTA+CGG | - | chr1_1:10483493-10483512 | None:intergenic | 25.0% |
| !!! | TGTATGGTTTTTTTAATTGC+AGG | + | chr1_1:10484181-10484200 | Msa0007330:intron | 25.0% |
| CAAATTGACAAAAAACACAC+AGG | - | chr1_1:10482459-10482478 | None:intergenic | 30.0% | |
| !!! | GTTTTTTGTCAATTTGCTTC+TGG | + | chr1_1:10482463-10482482 | Msa0007330:CDS | 30.0% |
| AATGCAGCACAATTCAAAAT+TGG | - | chr1_1:10482525-10482544 | None:intergenic | 30.0% | |
| TTGTGCTGCATTATTCATTT+AGG | + | chr1_1:10482533-10482552 | Msa0007330:intron | 30.0% | |
| TGTGCTGCATTATTCATTTA+GGG | + | chr1_1:10482534-10482553 | Msa0007330:intron | 30.0% | |
| ACATGTGCACAAACTTTAAT+TGG | + | chr1_1:10482588-10482607 | Msa0007330:intron | 30.0% | |
| ATAACTACATCTTATGCAAG+AGG | + | chr1_1:10482612-10482631 | Msa0007330:intron | 30.0% | |
| CTACATGTCTCACATTTAAA+TGG | + | chr1_1:10482722-10482741 | Msa0007330:intron | 30.0% | |
| ! | TGATTTTCTTTGAATGGATC+AGG | + | chr1_1:10482864-10482883 | Msa0007330:intron | 30.0% |
| ! | GATTTTCTTTGAATGGATCA+GGG | + | chr1_1:10482865-10482884 | Msa0007330:intron | 30.0% |
| !!! | CAAGATATTTTTGGTTGGAT+TGG | + | chr1_1:10482911-10482930 | Msa0007330:CDS | 30.0% |
| GTTCATTATGTTAGTCCTTT+AGG | + | chr1_1:10483349-10483368 | Msa0007330:intron | 30.0% | |
| CTTACAAATTCAATGTAGCT+AGG | - | chr1_1:10483407-10483426 | None:intergenic | 30.0% | |
| AATTCAACTTACGGTAAAGT+GGG | - | chr1_1:10483484-10483503 | None:intergenic | 30.0% | |
| AAATTCAACTTACGGTAAAG+TGG | - | chr1_1:10483485-10483504 | None:intergenic | 30.0% | |
| ! | TTTGTACCTTTTACTACTGT+TGG | + | chr1_1:10483535-10483554 | Msa0007330:intron | 30.0% |
| !! | ATTAGTGCTGTTATTTCTCA+TGG | + | chr1_1:10483570-10483589 | Msa0007330:intron | 30.0% |
| AAGTAAAGCCTTGAATCATT+TGG | + | chr1_1:10483634-10483653 | Msa0007330:intron | 30.0% | |
| ATGTACTAATGAGCTATCAA+AGG | - | chr1_1:10483793-10483812 | None:intergenic | 30.0% | |
| AGCTCATTAGTACATATTGT+TGG | + | chr1_1:10483798-10483817 | Msa0007330:intron | 30.0% | |
| ! | TTTTCTTACTATTCTACTGC+TGG | + | chr1_1:10484014-10484033 | Msa0007330:intron | 30.0% |
| ! | GGATTTTTGTTGAAGAACAT+TGG | + | chr1_1:10484035-10484054 | Msa0007330:intron | 30.0% |
| TCTGTTTAGAAAGCTATTTG+TGG | + | chr1_1:10484096-10484115 | Msa0007330:intron | 30.0% | |
| ACAAAAAACACACAGGATAG+GGG | - | chr1_1:10482452-10482471 | None:intergenic | 35.0% | |
| GACAAAAAACACACAGGATA+GGG | - | chr1_1:10482453-10482472 | None:intergenic | 35.0% | |
| TGACAAAAAACACACAGGAT+AGG | - | chr1_1:10482454-10482473 | None:intergenic | 35.0% | |
| !! | CAATTTGCTTCTGGTTTGTA+AGG | + | chr1_1:10482472-10482491 | Msa0007330:intron | 35.0% |
| !! | TAGCAGGTTTGTTACTTACA+AGG | + | chr1_1:10482495-10482514 | Msa0007330:intron | 35.0% |
| GTGCTGCATTATTCATTTAG+GGG | + | chr1_1:10482535-10482554 | Msa0007330:intron | 35.0% | |
| CATTAAAGGTTGTTTACCTC+AGG | + | chr1_1:10482654-10482673 | Msa0007330:intron | 35.0% | |
| !! | GGAAGAGCACAAGATATTTT+TGG | + | chr1_1:10482902-10482921 | Msa0007330:CDS | 35.0% |
| !!! | GAGCACAAGATATTTTTGGT+TGG | + | chr1_1:10482906-10482925 | Msa0007330:CDS | 35.0% |
| TATCAAAGAGACTGGATCTA+CGG | - | chr1_1:10483061-10483080 | None:intergenic | 35.0% | |
| TACGAACCAACAGTAGTAAA+AGG | - | chr1_1:10483544-10483563 | None:intergenic | 35.0% | |
| TCCATTAATGACATGTAGCA+TGG | + | chr1_1:10483671-10483690 | Msa0007330:intron | 35.0% | |
| TCCATGCTACATGTCATTAA+TGG | - | chr1_1:10483675-10483694 | None:intergenic | 35.0% | |
| CAAAAAACACACAGGATAGG+GGG | - | chr1_1:10482451-10482470 | None:intergenic | 40.0% | |
| CCTTTAATGCTCAATCCAAG+TGG | - | chr1_1:10482643-10482662 | None:intergenic | 40.0% | |
| CCACTTGGATTGAGCATTAA+AGG | + | chr1_1:10482640-10482659 | Msa0007330:intron | 40.0% | |
| CATTCTCTCTGAGCAAACAA+TGG | + | chr1_1:10482699-10482718 | Msa0007330:intron | 40.0% | |
| ! | TTTGGTTGGATTGGAGAAAG+TGG | + | chr1_1:10482920-10482939 | Msa0007330:CDS | 40.0% |
| ! | TTGGTTGGATTGGAGAAAGT+GGG | + | chr1_1:10482921-10482940 | Msa0007330:CDS | 40.0% |
| AGAAAGTGGGAAAAGGTGAT+TGG | + | chr1_1:10482934-10482953 | Msa0007330:CDS | 40.0% | |
| !!! | CACCGACACGGTAATTTTTT+CGG | + | chr1_1:10483085-10483104 | Msa0007330:intron | 40.0% |
| TGCCGAAAAAATTACCGTGT+CGG | - | chr1_1:10483090-10483109 | None:intergenic | 40.0% | |
| TGTAGCTAGGGACTTTCATT+AGG | - | chr1_1:10483394-10483413 | None:intergenic | 40.0% | |
| GCAGTACACCAAATGATTCA+AGG | - | chr1_1:10483645-10483664 | None:intergenic | 40.0% | |
| GAATGAAGATCCTGCAAACT+TGG | + | chr1_1:10483735-10483754 | Msa0007330:intron | 40.0% | |
| TCAAATCCAACCAAGTTTGC+AGG | - | chr1_1:10483748-10483767 | None:intergenic | 40.0% | |
| !! | AAGGTACGATTTGGTGCATA+AGG | - | chr1_1:10483774-10483793 | None:intergenic | 40.0% |
| ! | GAGCTATCAAAGGTACGATT+TGG | - | chr1_1:10483783-10483802 | None:intergenic | 40.0% |
| ! | CTGTTATCAAAAGTGTGCGA+AGG | - | chr1_1:10483853-10483872 | None:intergenic | 40.0% |
| TGACTTCAAATCTAGCTGCA+TGG | + | chr1_1:10483960-10483979 | Msa0007330:intron | 40.0% | |
| TTCAAATCTAGCTGCATGGT+TGG | + | chr1_1:10483964-10483983 | Msa0007330:intron | 40.0% | |
| TCAAATCTAGCTGCATGGTT+GGG | + | chr1_1:10483965-10483984 | Msa0007330:intron | 40.0% | |
| !! | CTTCTGGTTTGTAAGGTAGC+AGG | + | chr1_1:10482479-10482498 | Msa0007330:intron | 45.0% |
| ATGCAAGAGGAACTTCCACT+TGG | + | chr1_1:10482625-10482644 | Msa0007330:intron | 45.0% | |
| GGATTGGAGAAAGTGGGAAA+AGG | + | chr1_1:10482927-10482946 | Msa0007330:CDS | 45.0% | |
| GTGATTGGAGAGGAATCTCA+AGG | + | chr1_1:10482949-10482968 | Msa0007330:CDS | 45.0% | |
| GACGGCGATTGAGATTACTT+CGG | - | chr1_1:10483037-10483056 | None:intergenic | 45.0% | |
| GGTGGTGATATCAAAGAGAC+TGG | - | chr1_1:10483069-10483088 | None:intergenic | 45.0% | |
| CTTTGATATCACCACCGACA+CGG | + | chr1_1:10483073-10483092 | Msa0007330:CDS | 45.0% | |
| CGAAAAAATTACCGTGTCGG+TGG | - | chr1_1:10483087-10483106 | None:intergenic | 45.0% | |
| GAAGATCCTGCAAACTTGGT+TGG | + | chr1_1:10483739-10483758 | Msa0007330:intron | 45.0% | |
| GGCTGAGAAGAGACTGCTAT+TGG | + | chr1_1:10482556-10482575 | Msa0007330:intron | 50.0% | |
| TGAATGGATCAGGGATTCCG+TGG | + | chr1_1:10482874-10482893 | Msa0007330:intron | 50.0% | |
| TTGTGCTCTTCCTCAGTCCA+CGG | - | chr1_1:10482894-10482913 | None:intergenic | 50.0% | |
| GTGGGAAAAGGTGATTGGAG+AGG | + | chr1_1:10482939-10482958 | Msa0007330:CDS | 50.0% | |
| ! | GCATGACTTGCAACATGCGT+AGG | - | chr1_1:10482996-10483015 | None:intergenic | 50.0% |
| GGCGATTGAGATTACTTCGG+CGG | - | chr1_1:10483034-10483053 | None:intergenic | 50.0% | |
| ! | ATCAGGGATTCCGTGGACTG+AGG | + | chr1_1:10482881-10482900 | Msa0007330:intron | 55.0% |
| AGAGACTGGATCTACGGCGA+CGG | - | chr1_1:10483055-10483074 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 10482409 | 10484212 | 10482409 | ID=Msa0007330;Name=Msa0007330 |
| chr1_1 | mRNA | 10482409 | 10484212 | 10482409 | ID=Msa0007330-mRNA-1;Parent=Msa0007330;Name=Msa0007330-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|0.5|0.66|0.75|4|0|100 |
| chr1_1 | exon | 10482409 | 10482484 | 10482409 | ID=Msa0007330-mRNA-1:exon:3811;Parent=Msa0007330-mRNA-1 |
| chr1_1 | exon | 10482886 | 10483094 | 10482886 | ID=Msa0007330-mRNA-1:exon:3812;Parent=Msa0007330-mRNA-1 |
| chr1_1 | exon | 10483363 | 10483370 | 10483363 | ID=Msa0007330-mRNA-1:exon:3813;Parent=Msa0007330-mRNA-1 |
| chr1_1 | exon | 10484203 | 10484212 | 10484203 | ID=Msa0007330-mRNA-1:exon:3814;Parent=Msa0007330-mRNA-1 |
| chr1_1 | CDS | 10482409 | 10482484 | 10482409 | ID=Msa0007330-mRNA-1:cds;Parent=Msa0007330-mRNA-1 |
| chr1_1 | CDS | 10482886 | 10483094 | 10482886 | ID=Msa0007330-mRNA-1:cds;Parent=Msa0007330-mRNA-1 |
| chr1_1 | CDS | 10483363 | 10483370 | 10483363 | ID=Msa0007330-mRNA-1:cds;Parent=Msa0007330-mRNA-1 |
| chr1_1 | CDS | 10484203 | 10484212 | 10484203 | ID=Msa0007330-mRNA-1:cds;Parent=Msa0007330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
