AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0008460

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0008460 MtrunA17_Chr3g0139671 61.818 165 44 1 34 179 23 187 9.35e-68 226
Msa0008460 MtrunA17_Chr1g0157731 61.212 165 45 1 34 179 29 193 6.83e-67 224
Msa0008460 MtrunA17_Chr7g0238631 59.064 171 50 2 29 180 47 216 7.09e-66 215
Msa0008460 MtrunA17_Chr5g0397841 51.974 152 51 2 42 171 53 204 3.35e-48 166
Msa0008460 MtrunA17_Chr5g0429661 37.129 202 83 5 44 238 122 286 5.43e-31 118
Msa0008460 MtrunA17_Chr3g0117511 41.139 158 56 2 44 201 183 303 8.99e-31 119
Msa0008460 MtrunA17_Chr4g0058991 41.509 159 56 2 43 201 208 329 9.34e-31 119
Msa0008460 MtrunA17_Chr7g0228531 44.030 134 41 2 44 177 220 319 1.35e-28 113
Msa0008460 MtrunA17_Chr1g0177901 47.445 137 66 3 99 233 17 149 3.66e-28 107
Msa0008460 MtrunA17_Chr7g0228401 43.046 151 58 6 30 173 246 375 5.35e-27 109
Msa0008460 MtrunA17_Chr7g0228481 39.106 179 66 4 44 213 220 364 1.29e-26 107
Msa0008460 MtrunA17_Chr5g0401731 39.161 143 62 3 93 210 12 154 2.37e-26 105
Msa0008460 MtrunA17_Chr7g0233061 36.224 196 86 5 25 217 161 320 7.80e-25 102
Msa0008460 MtrunA17_Chr4g0053431 40.385 104 43 1 93 177 2 105 2.20e-23 96.3
Msa0008460 MtrunA17_Chr4g0008551 33.333 135 57 1 43 177 37 138 2.27e-23 97.8
Msa0008460 MtrunA17_Chr3g0133601 37.719 114 52 1 93 187 34 147 1.52e-22 93.2
Msa0008460 MtrunA17_Chr4g0039971 37.778 135 52 2 44 178 15 117 6.04e-22 94.0
Msa0008460 MtrunA17_Chr5g0437321 31.844 179 83 4 43 217 18 161 7.70e-22 92.4
Msa0008460 MtrunA17_Chr6g0454921 40.385 104 43 1 93 177 12 115 1.80e-21 89.7
Msa0008460 MtrunA17_Chr1g0154031 36.170 141 58 2 44 184 78 186 3.08e-21 92.4
Msa0008460 MtrunA17_Chr8g0349261 38.971 136 50 3 44 178 15 118 3.40e-21 90.9
Msa0008460 MtrunA17_Chr6g0480581 48.649 74 38 0 103 176 30 103 3.95e-21 89.7
Msa0008460 MtrunA17_Chr5g0417621 47.368 76 40 0 103 178 160 235 7.19e-21 91.7
Msa0008460 MtrunA17_Chr4g0022931 35.507 138 57 1 44 181 15 120 8.43e-21 89.4
Msa0008460 MtrunA17_Chr7g0247131 53.165 79 35 1 102 178 4 82 8.80e-21 89.4
Msa0008460 MtrunA17_Chr4g0042501 32.394 142 63 1 36 177 97 205 1.21e-20 90.9
Msa0008460 MtrunA17_Chr3g0115821 31.928 166 78 3 44 206 14 147 1.43e-20 89.7
Msa0008460 MtrunA17_Chr5g0395281 34.437 151 64 3 44 191 14 132 1.47e-20 89.4
Msa0008460 MtrunA17_Chr4g0022901 36.296 135 54 2 44 178 15 117 1.88e-20 88.6
Msa0008460 MtrunA17_Chr4g0055981 33.333 165 75 3 16 177 26 158 2.08e-20 87.4
Msa0008460 MtrunA17_Chr5g0410961 34.641 153 63 4 44 192 14 133 2.33e-20 89.4
Msa0008460 MtrunA17_Chr7g0274581 34.074 135 57 2 44 178 14 116 2.82e-20 86.7
Msa0008460 MtrunA17_Chr4g0022911 34.815 135 56 1 44 178 15 117 2.89e-20 88.2
Msa0008460 MtrunA17_Chr5g0440781 32.370 173 80 5 42 209 12 152 3.04e-20 85.9
Msa0008460 MtrunA17_Chr1g0203411 35.556 135 55 2 44 178 14 116 3.22e-20 88.2
Msa0008460 MtrunA17_Chr5g0440761 32.749 171 78 5 44 209 14 152 9.26e-20 86.3
Msa0008460 MtrunA17_Chr6g0460661 48.571 70 36 0 103 172 42 111 1.02e-19 84.0
Msa0008460 MtrunA17_Chr5g0441141 32.749 171 78 5 44 209 14 152 1.08e-19 86.3
Msa0008460 MtrunA17_Chr4g0042671 34.815 135 56 2 44 178 14 116 1.32e-19 87.8
Msa0008460 MtrunA17_Chr3g0125801 33.094 139 60 1 39 177 11 116 1.39e-19 86.3
Msa0008460 MtrunA17_Chr2g0309911 34.074 135 57 1 44 178 13 115 1.59e-19 86.7
Msa0008460 MtrunA17_Chr4g0032401 35.152 165 95 4 96 249 39 202 1.72e-19 86.7
Msa0008460 MtrunA17_Chr5g0417821 33.333 135 58 1 44 178 9 111 1.97e-19 85.9
Msa0008460 MtrunA17_Chr2g0328771 36.923 130 77 4 96 222 42 169 2.02e-19 86.3
Msa0008460 MtrunA17_Chr4g0070641 30.636 173 83 2 44 216 14 149 2.07e-19 83.2
Msa0008460 MtrunA17_Chr4g0037141 32.639 144 64 3 42 185 12 122 2.08e-19 85.9
Msa0008460 MtrunA17_Chr3g0117091 40.833 120 69 2 97 216 35 152 2.72e-19 86.3
Msa0008460 MtrunA17_Chr8g0346561 34.899 149 65 1 44 192 14 130 2.97e-19 85.5
Msa0008460 MtrunA17_Chr1g0211161 48.780 82 42 0 97 178 36 117 3.64e-19 84.0
Msa0008460 MtrunA17_Chr8g0342481 43.333 90 51 0 110 199 49 138 3.99e-19 86.3
Msa0008460 MtrunA17_Chr2g0330041 29.697 165 83 2 40 203 10 142 4.24e-19 86.3
Msa0008460 MtrunA17_Chr4g0048511 33.803 142 61 3 44 185 15 123 4.93e-19 85.9
Msa0008460 MtrunA17_Chr6g0453471 34.074 135 57 1 44 178 14 116 5.83e-19 85.5
Msa0008460 MtrunA17_Chr7g0261281 32.738 168 63 3 44 193 14 149 6.48e-19 84.3
Msa0008460 MtrunA17_Chr8g0387421 48.780 82 42 0 97 178 35 116 7.01e-19 84.7
Msa0008460 MtrunA17_Chr2g0281071 34.507 142 60 3 44 185 15 123 7.51e-19 85.1
Msa0008460 MtrunA17_Chr4g0070611 30.636 173 83 2 44 216 14 149 7.56e-19 84.7
Msa0008460 MtrunA17_Chr2g0323351 35.000 140 59 1 44 183 14 121 7.76e-19 83.6
Msa0008460 MtrunA17_Chr8g0342541 27.869 183 93 3 40 216 10 159 8.69e-19 84.7
Msa0008460 MtrunA17_Chr4g0058631 44.944 89 48 1 97 185 35 122 1.06e-18 84.7
Msa0008460 MtrunA17_Chr1g0186061 35.766 137 56 1 41 177 19 123 1.15e-18 83.2
Msa0008460 MtrunA17_Chr7g0240821 32.432 148 67 3 47 193 6 121 1.19e-18 82.4
Msa0008460 MtrunA17_Chr8g0342521 38.211 123 71 3 97 216 35 155 1.57e-18 84.3
Msa0008460 MtrunA17_Chr3g0099131 35.075 134 55 3 44 177 43 144 1.58e-18 85.1
Msa0008460 MtrunA17_Chr7g0220341 30.481 187 93 2 44 230 27 176 1.69e-18 83.2
Msa0008460 MtrunA17_Chr4g0022881 30.435 161 80 2 44 204 14 142 1.85e-18 82.0
Msa0008460 MtrunA17_Chr2g0323411 31.579 152 67 4 44 191 14 132 2.19e-18 83.6
Msa0008460 MtrunA17_Chr3g0103281 30.539 167 102 2 110 265 48 211 2.42e-18 83.6
Msa0008460 MtrunA17_Chr1g0187761 33.824 136 58 2 44 179 14 117 2.55e-18 82.4
Msa0008460 MtrunA17_Chr1g0167691 34.815 135 56 2 44 178 14 116 2.94e-18 82.0
Msa0008460 MtrunA17_Chr8g0385321 31.655 139 63 2 40 178 10 116 3.46e-18 82.8
Msa0008460 MtrunA17_Chr3g0088461 44.578 83 46 0 96 178 44 126 3.58e-18 83.2
Msa0008460 MtrunA17_Chr7g0270891 34.074 135 57 1 44 178 14 116 4.07e-18 83.2
Msa0008460 MtrunA17_Chr5g0435101 32.593 135 59 2 44 178 13 115 4.31e-18 80.9
Msa0008460 MtrunA17_Chr4g0030881 35.294 136 63 2 42 177 7 117 4.65e-18 81.6
Msa0008460 MtrunA17_Chr5g0434931 32.143 140 63 1 39 178 32 139 6.63e-18 81.6
Msa0008460 MtrunA17_Chr1g0203441 45.122 82 45 0 97 178 36 117 7.20e-18 81.3
Msa0008460 MtrunA17_Chr1g0193801 32.593 135 59 1 44 178 14 116 7.31e-18 82.8
Msa0008460 MtrunA17_Chr7g0254261 46.667 75 40 0 103 177 115 189 7.83e-18 82.4
Msa0008460 MtrunA17_Chr2g0311221 35.156 128 51 2 44 171 16 111 1.06e-17 81.6
Msa0008460 MtrunA17_Chr5g0397231 50.667 75 37 0 97 171 35 109 1.14e-17 81.6
Msa0008460 MtrunA17_Chr3g0131121 32.117 137 61 2 42 178 12 116 1.22e-17 80.9
Msa0008460 MtrunA17_Chr8g0343831 43.373 83 47 0 96 178 30 112 1.35e-17 80.1
Msa0008460 MtrunA17_Chr1g0167661 34.532 139 58 3 44 182 14 119 1.39e-17 80.1
Msa0008460 MtrunA17_Chr5g0434911 32.143 140 63 1 39 178 18 125 1.78e-17 80.1
Msa0008460 MtrunA17_Chr7g0217741 32.593 135 59 1 44 178 14 116 1.86e-17 80.9
Msa0008460 MtrunA17_Chr1g0168661 34.815 135 56 2 44 178 23 125 2.69e-17 79.3
Msa0008460 MtrunA17_Chr1g0193371 40.594 101 55 1 97 192 35 135 2.81e-17 80.9
Msa0008460 MtrunA17_Chr4g0068061 32.593 135 59 2 44 178 14 116 3.05e-17 80.5
Msa0008460 MtrunA17_Chr4g0044421 33.333 135 58 2 44 178 14 116 3.98e-17 77.8
Msa0008460 MtrunA17_Chr8g0354661 35.075 134 55 2 44 177 39 140 4.10e-17 80.9
Msa0008460 MtrunA17_Chr6g0460671 29.412 153 74 2 37 188 92 211 4.20e-17 80.1
Msa0008460 MtrunA17_Chr7g0275911 44.578 83 46 0 96 178 34 116 6.36e-17 78.6
Msa0008460 MtrunA17_Chr7g0228991 32.374 139 62 1 40 178 27 133 6.58e-17 78.6
Msa0008460 MtrunA17_Chr7g0228891 42.553 94 52 1 87 178 23 116 7.41e-17 78.6
Msa0008460 MtrunA17_Chr1g0180391 30.657 137 63 1 44 180 21 125 7.53e-17 77.8
Msa0008460 MtrunA17_Chr5g0441131 29.480 173 80 5 44 207 11 150 8.03e-17 76.6
Msa0008460 MtrunA17_Chr1g0192411 28.194 227 106 6 39 246 9 197 1.00e-16 79.3
Msa0008460 MtrunA17_Chr6g0470971 30.303 165 99 3 99 257 39 193 1.28e-16 77.8
Msa0008460 MtrunA17_Chr1g0151941 34.722 144 87 3 97 240 36 172 1.39e-16 77.4
Msa0008460 MtrunA17_Chr1g0194951 32.593 135 59 2 44 178 14 116 1.72e-16 78.6
Msa0008460 MtrunA17_Chr5g0434841 32.886 149 67 3 31 178 8 124 1.83e-16 78.2
Msa0008460 MtrunA17_Chr7g0228231 37.963 108 47 2 91 178 11 118 2.19e-16 75.9
Msa0008460 MtrunA17_Chr3g0080861 33.333 135 58 2 44 178 39 141 2.49e-16 78.6
Msa0008460 MtrunA17_Chr4g0057031 34.074 135 57 1 44 178 14 116 2.77e-16 77.0
Msa0008460 MtrunA17_Chr7g0217221 31.111 135 61 1 44 178 14 116 2.79e-16 77.0
Msa0008460 MtrunA17_Chr7g0254411 30.061 163 79 4 44 203 14 144 2.97e-16 77.8
Msa0008460 MtrunA17_Chr5g0434831 31.429 140 64 1 39 178 4 111 3.06e-16 75.1
Msa0008460 MtrunA17_Chr6g0483051 31.690 142 78 2 47 170 72 212 3.31e-16 78.6
Msa0008460 MtrunA17_Chr6g0483051 31.333 150 82 3 45 174 17 165 7.05e-16 77.4
Msa0008460 MtrunA17_Chr3g0110351 42.553 94 52 1 87 178 23 116 3.66e-16 77.0
Msa0008460 MtrunA17_Chr5g0434571 42.553 94 52 1 87 178 59 152 4.87e-16 77.0
Msa0008460 MtrunA17_Chr8g0362231 35.922 103 62 1 103 201 48 150 5.15e-16 77.4
Msa0008460 MtrunA17_Chr4g0060721 28.667 150 75 2 44 193 15 132 5.77e-16 76.6
Msa0008460 MtrunA17_Chr1g0209661 29.630 135 63 1 44 178 29 131 6.64e-16 76.3
Msa0008460 MtrunA17_Chr5g0416341 42.105 76 44 0 103 178 52 127 7.41e-16 77.0
Msa0008460 MtrunA17_Chr1g0194301 27.604 192 101 3 44 230 35 193 1.03e-15 75.5
Msa0008460 MtrunA17_Chr6g0452271 43.902 82 46 0 97 178 35 116 1.12e-15 75.9
Msa0008460 MtrunA17_Chr7g0229131 41.772 79 46 0 110 188 8 86 1.17e-15 73.2
Msa0008460 MtrunA17_Chr8g0334881 32.836 134 57 2 44 176 12 113 1.92e-15 75.1
Msa0008460 MtrunA17_Chr3g0092401 27.368 190 104 4 44 231 15 172 2.47e-15 74.7
Msa0008460 MtrunA17_Chr4g0013361 31.655 139 61 3 44 181 12 117 2.50e-15 74.3
Msa0008460 MtrunA17_Chr2g0327821 33.333 135 58 3 44 178 8 110 2.60e-15 73.6
Msa0008460 MtrunA17_Chr6g0450101 29.630 135 63 1 44 178 16 118 3.05e-15 72.8
Msa0008460 MtrunA17_Chr3g0121241 35.714 112 51 3 94 185 42 152 3.13e-15 74.3
Msa0008460 MtrunA17_Chr8g0360111 31.655 139 60 2 36 174 22 125 3.91e-15 73.6
Msa0008460 MtrunA17_Chr7g0271241 44.000 75 42 0 97 171 35 109 5.62e-15 74.3
Msa0008460 MtrunA17_Chr6g0453211 31.250 128 56 2 44 171 14 109 1.61e-14 72.4
Msa0008460 MtrunA17_Chr4g0022891 31.818 132 58 2 44 175 14 113 2.05e-14 71.2
Msa0008460 MtrunA17_Chr7g0269831 31.937 191 94 4 44 232 14 170 4.73e-14 71.2
Msa0008460 MtrunA17_Chr3g0135311 46.377 69 37 0 110 178 49 117 1.43e-13 70.1
Msa0008460 MtrunA17_Chr5g0400821 39.423 104 42 3 96 178 14 117 1.61e-13 69.3
Msa0008460 MtrunA17_Chr1g0194291 28.148 135 65 1 44 178 23 125 3.97e-13 67.8
Msa0008460 MtrunA17_Chr7g0264641 36.607 112 49 4 96 185 14 125 7.99e-13 67.0
Msa0008460 MtrunA17_Chr7g0229101 42.424 66 38 0 110 175 8 73 8.59e-13 65.9
Msa0008460 MtrunA17_Chr4g0068921 36.957 92 53 1 96 182 46 137 8.99e-13 65.5
Msa0008460 MtrunA17_Chr6g0487491 35.246 122 70 2 97 209 36 157 1.06e-12 66.6
Msa0008460 MtrunA17_Chr3g0104491 44.776 67 33 1 115 177 1 67 1.18e-12 66.6
Msa0008460 MtrunA17_Chr2g0322521 35.075 134 55 3 44 177 31 132 1.38e-12 67.4
Msa0008460 MtrunA17_Chr5g0434901 40.909 66 39 0 110 175 9 74 1.44e-12 63.2
Msa0008460 MtrunA17_Chr5g0425591 31.579 114 45 3 44 156 11 92 1.69e-12 62.4
Msa0008460 MtrunA17_Chr4g0028311 41.463 82 48 0 97 178 36 117 1.96e-12 66.2
Msa0008460 MtrunA17_Chr1g0152011 43.478 69 39 0 110 178 49 117 2.26e-12 66.2
Msa0008460 MtrunA17_Chr2g0293911 36.957 92 53 1 96 182 46 137 3.02e-12 65.9
Msa0008460 MtrunA17_Chr7g0233151 52.941 51 24 0 127 177 1 51 3.47e-12 63.5
Msa0008460 MtrunA17_Chr3g0093811 42.029 69 40 0 110 178 18 86 1.27e-11 63.5
Msa0008460 MtrunA17_Chr4g0072751 45.161 62 34 0 110 171 49 110 3.58e-11 62.8
Msa0008460 MtrunA17_Chr2g0327351 34.247 146 61 4 96 206 14 159 4.74e-11 62.4
Msa0008460 MtrunA17_Chr3g0099141 30.435 115 48 2 44 158 42 124 6.02e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0008460 AT4G32730.1 60.714 168 47 1 31 179 22 189 2.21e-68 226
Msa0008460 AT4G32730.5 60.714 168 47 1 31 179 22 189 7.72e-68 227
Msa0008460 AT4G32730.4 60.714 168 47 1 31 179 22 189 7.72e-68 227
Msa0008460 AT4G32730.3 60.714 168 47 1 31 179 22 189 7.72e-68 227
Msa0008460 AT4G32730.2 60.714 168 47 1 31 179 22 189 7.72e-68 227
Msa0008460 AT5G02320.1 52.683 205 71 4 1 180 27 230 7.79e-67 217
Msa0008460 AT5G02320.2 52.683 205 71 4 1 180 27 230 7.79e-67 217
Msa0008460 AT5G02320.3 59.880 167 47 2 33 180 5 170 1.77e-66 215
Msa0008460 AT4G00540.2 50.481 208 74 3 1 179 1 208 3.41e-65 209
Msa0008460 AT4G00540.1 50.000 206 76 2 1 179 1 206 3.60e-64 207
Msa0008460 AT5G11510.5 54.396 182 64 1 17 179 2 183 3.61e-64 214
Msa0008460 AT5G11510.2 54.396 182 64 1 17 179 2 183 3.81e-64 215
Msa0008460 AT5G11510.3 54.396 182 64 1 17 179 2 183 9.82e-64 216
Msa0008460 AT5G11510.1 54.396 182 64 1 17 179 2 183 9.82e-64 216
Msa0008460 AT5G11510.4 54.396 182 64 1 17 179 2 183 9.82e-64 216
Msa0008460 AT3G09370.2 58.434 166 49 2 34 180 74 238 1.16e-62 206
Msa0008460 AT3G09370.1 58.434 166 49 2 34 180 69 233 1.25e-62 205
Msa0008460 AT3G09370.3 58.434 166 49 2 34 180 82 246 2.46e-62 205
Msa0008460 AT3G27785.1 44.000 150 49 2 30 177 173 289 1.35e-33 127
Msa0008460 AT4G18770.1 45.775 142 42 2 39 178 210 318 1.98e-32 124
Msa0008460 AT5G40360.1 43.537 147 46 3 44 190 158 267 4.81e-29 113
Msa0008460 AT2G13960.1 48.673 113 51 3 1 107 27 138 2.87e-28 106
Msa0008460 AT5G58850.1 41.045 134 46 1 44 177 105 205 6.16e-28 111
Msa0008460 AT5G11050.1 40.000 140 51 1 38 177 99 205 8.04e-28 111
Msa0008460 AT2G13960.2 56.322 87 37 1 21 107 18 103 2.67e-27 102
Msa0008460 AT3G50060.1 31.351 185 79 3 43 212 5 156 5.05e-27 107
Msa0008460 AT2G25230.1 46.825 126 55 4 96 221 46 159 7.44e-27 105
Msa0008460 AT2G23290.1 36.301 146 57 2 35 177 1 113 2.19e-24 100
Msa0008460 AT5G67300.1 42.308 104 41 1 93 177 3 106 3.22e-24 99.8
Msa0008460 AT4G37260.1 33.750 160 66 3 35 191 1 123 3.29e-24 99.8
Msa0008460 AT3G55730.1 35.507 138 56 1 40 177 52 156 5.47e-24 100
Msa0008460 AT3G09230.1 32.558 172 75 3 40 203 51 189 7.67e-24 100
Msa0008460 AT3G61250.1 38.028 142 55 3 44 185 14 122 2.84e-22 94.4
Msa0008460 AT1G17950.1 46.667 75 40 0 103 177 31 105 6.45e-22 92.4
Msa0008460 AT3G29020.1 40.816 98 55 2 95 190 82 178 8.59e-22 91.7
Msa0008460 AT5G16770.4 36.842 152 59 4 44 191 14 132 1.51e-21 92.8
Msa0008460 AT5G16770.3 36.842 152 59 4 44 191 14 132 1.51e-21 92.8
Msa0008460 AT5G16770.1 36.842 152 59 4 44 191 14 132 1.75e-21 92.8
Msa0008460 AT5G16770.2 36.842 152 59 4 44 191 14 132 1.75e-21 92.8
Msa0008460 AT5G40430.1 50.667 75 37 0 102 176 78 152 2.36e-21 90.9
Msa0008460 AT4G33450.1 48.148 81 42 0 103 183 45 125 2.62e-21 90.5
Msa0008460 AT1G69560.1 45.349 86 44 2 95 178 124 208 3.02e-21 92.0
Msa0008460 AT1G26780.1 43.750 96 51 2 95 188 115 209 3.36e-21 90.9
Msa0008460 AT3G29020.2 40.816 98 55 2 95 190 84 180 3.44e-21 91.3
Msa0008460 AT1G69560.2 47.368 76 40 0 103 178 149 224 3.91e-21 92.0
Msa0008460 AT4G38620.1 30.319 188 96 5 42 228 12 165 4.39e-21 90.5
Msa0008460 AT1G34670.1 35.032 157 65 4 44 196 14 137 5.54e-21 91.7
Msa0008460 AT3G02940.2 37.037 135 53 2 44 178 14 116 7.85e-21 90.5
Msa0008460 AT1G26780.2 43.750 96 51 2 95 188 115 209 7.91e-21 91.3
Msa0008460 AT3G18100.1 34.247 146 76 2 44 170 495 639 8.78e-21 92.4
Msa0008460 AT3G18100.1 32.051 156 84 4 45 179 443 597 1.03e-16 80.5
Msa0008460 AT3G18100.3 34.247 146 76 2 44 170 447 591 9.93e-21 92.4
Msa0008460 AT3G18100.3 32.051 156 84 4 45 179 395 549 1.27e-16 80.1
Msa0008460 AT3G02940.1 37.037 135 53 2 44 178 14 116 1.02e-20 90.5
Msa0008460 AT3G02940.3 37.037 135 53 2 44 178 14 116 1.02e-20 90.5
Msa0008460 AT2G26960.1 37.324 142 57 2 43 184 21 130 1.25e-20 91.3
Msa0008460 AT3G18100.4 34.247 146 76 2 44 170 334 478 1.30e-20 92.0
Msa0008460 AT3G18100.4 32.051 156 84 4 45 179 282 436 1.77e-16 79.7
Msa0008460 AT1G79180.2 34.722 144 77 3 44 178 16 151 1.31e-20 90.1
Msa0008460 AT3G18100.2 34.247 146 76 2 44 170 282 426 1.48e-20 91.7
Msa0008460 AT3G18100.2 32.051 156 84 4 45 179 230 384 1.88e-16 79.7
Msa0008460 AT5G40330.1 29.592 196 89 4 37 227 7 158 1.93e-20 87.4
Msa0008460 AT1G74080.1 34.752 141 55 3 44 179 14 122 2.19e-20 89.7
Msa0008460 AT5G14750.1 32.143 168 75 3 44 205 18 152 2.27e-20 87.0
Msa0008460 AT5G60890.1 37.778 135 52 2 44 178 14 116 3.22e-20 88.6
Msa0008460 AT3G27920.1 42.424 99 55 1 97 193 37 135 3.58e-20 87.0
Msa0008460 AT3G13890.1 28.261 184 104 3 40 220 10 168 3.79e-20 89.4
Msa0008460 AT2G39880.1 30.667 150 71 1 28 177 34 150 4.07e-20 89.4
Msa0008460 AT1G35515.1 33.803 142 61 3 44 185 14 122 4.31e-20 86.7
Msa0008460 AT4G28110.1 34.074 135 57 2 44 178 14 116 4.32e-20 87.8
Msa0008460 AT1G22640.1 33.803 142 61 3 44 185 14 122 4.65e-20 87.4
Msa0008460 AT3G48920.1 47.619 84 44 0 97 180 41 124 7.86e-20 87.0
Msa0008460 AT5G10280.1 35.556 135 55 2 44 178 14 116 1.51e-19 87.4
Msa0008460 AT3G11440.2 35.075 134 55 2 44 177 43 144 2.19e-19 87.8
Msa0008460 AT4G34990.1 32.544 169 79 4 42 208 12 147 2.63e-19 85.5
Msa0008460 AT3G11440.3 35.075 134 55 2 44 177 43 144 3.01e-19 87.8
Msa0008460 AT3G11440.4 35.075 134 55 2 44 177 43 144 3.01e-19 87.8
Msa0008460 AT3G11440.1 35.075 134 55 2 44 177 43 144 3.01e-19 87.8
Msa0008460 AT3G12720.1 48.718 78 39 1 110 187 58 134 3.16e-19 85.9
Msa0008460 AT5G65230.1 35.556 135 55 2 44 178 14 116 5.45e-19 85.5
Msa0008460 AT1G73410.1 32.593 135 58 1 43 177 5 106 6.03e-19 84.0
Msa0008460 AT4G01680.2 34.286 175 82 6 44 207 14 166 6.53e-19 85.5
Msa0008460 AT1G63910.1 48.780 82 42 0 97 178 35 116 6.55e-19 85.9
Msa0008460 AT1G73410.2 46.667 75 40 0 103 177 32 106 6.95e-19 83.2
Msa0008460 AT3G23250.1 29.680 219 98 5 44 262 14 176 7.38e-19 84.7
Msa0008460 AT1G18570.1 31.852 135 60 1 44 178 15 117 7.47e-19 85.5
Msa0008460 AT1G56160.1 33.333 135 58 2 44 178 16 118 7.52e-19 84.7
Msa0008460 AT4G01680.3 41.803 122 58 4 97 207 35 154 7.98e-19 83.6
Msa0008460 AT3G13890.2 28.022 182 98 3 40 220 10 159 1.05e-18 85.1
Msa0008460 AT4G21440.1 33.803 142 61 3 44 185 14 122 1.97e-18 84.3
Msa0008460 AT4G26930.1 36.090 133 53 2 44 176 21 121 2.06e-18 84.7
Msa0008460 AT4G12350.1 32.240 183 119 3 87 267 23 202 2.12e-18 83.2
Msa0008460 AT5G17800.1 44.000 75 42 0 103 177 119 193 2.18e-18 84.0
Msa0008460 AT5G54230.1 31.690 142 64 2 44 185 14 122 2.22e-18 84.0
Msa0008460 AT5G14750.3 39.252 107 56 3 107 205 13 118 2.29e-18 80.9
Msa0008460 AT1G74430.1 46.341 82 44 0 97 178 35 116 2.29e-18 83.2
Msa0008460 AT1G79180.1 34.074 135 57 1 44 178 16 118 2.35e-18 83.2
Msa0008460 AT5G12870.1 43.373 83 47 0 96 178 40 122 2.71e-18 82.8
Msa0008460 AT3G01140.1 34.815 135 56 2 44 178 57 159 2.82e-18 84.3
Msa0008460 AT3G01140.2 34.815 135 56 2 44 178 14 116 3.17e-18 83.6
Msa0008460 AT4G01680.1 33.714 175 71 5 44 207 14 154 3.69e-18 83.6
Msa0008460 AT5G15310.1 34.074 135 57 2 44 178 14 116 5.31e-18 82.8
Msa0008460 AT5G15310.4 31.410 156 74 3 44 199 14 136 5.64e-18 81.6
Msa0008460 AT2G16720.1 32.394 142 63 3 44 185 14 122 5.89e-18 82.0
Msa0008460 AT3G12820.1 41.748 103 40 2 96 178 16 118 6.02e-18 81.3
Msa0008460 AT4G17785.2 46.053 76 40 1 110 185 49 123 6.39e-18 82.8
Msa0008460 AT5G15310.2 34.074 135 57 2 44 178 14 116 6.74e-18 82.4
Msa0008460 AT3G12820.2 52.174 69 33 0 110 178 2 70 7.07e-18 80.1
Msa0008460 AT4G17785.1 46.053 76 40 1 110 185 49 123 7.20e-18 82.8
Msa0008460 AT2G47190.1 31.852 135 60 1 44 178 22 124 7.69e-18 81.6
Msa0008460 AT4G09460.1 31.250 144 66 3 42 185 12 122 8.06e-18 80.9
Msa0008460 AT1G57560.2 34.677 124 76 1 97 215 35 158 1.10e-17 81.3
Msa0008460 AT4G05100.1 33.803 142 61 3 44 185 15 123 1.15e-17 82.0
Msa0008460 AT5G61420.2 30.108 186 89 4 44 222 14 165 1.40e-17 82.0
Msa0008460 AT1G16490.1 46.753 77 41 0 110 186 50 126 1.79e-17 80.5
Msa0008460 AT3G08500.1 43.373 83 47 0 96 178 52 134 1.79e-17 81.6
Msa0008460 AT5G06100.1 33.582 134 57 2 44 177 34 135 1.88e-17 82.0
Msa0008460 AT5G07700.1 33.333 135 58 1 44 178 14 116 1.99e-17 81.3
Msa0008460 AT5G07700.2 33.333 135 58 1 44 178 14 116 1.99e-17 81.3
Msa0008460 AT5G06100.5 33.582 134 57 2 44 177 34 135 2.14e-17 82.4
Msa0008460 AT5G06100.2 33.582 134 57 2 44 177 34 135 2.14e-17 82.4
Msa0008460 AT5G06100.3 33.582 134 57 2 44 177 34 135 2.14e-17 82.4
Msa0008460 AT5G06100.4 33.582 134 57 2 44 177 34 135 2.14e-17 82.4
Msa0008460 AT1G09540.1 45.122 82 45 0 97 178 35 116 2.19e-17 81.6
Msa0008460 AT5G55020.1 35.338 133 54 2 44 176 28 128 2.28e-17 82.0
Msa0008460 AT5G26660.2 50.725 69 34 0 110 178 17 85 2.39e-17 80.9
Msa0008460 AT5G07690.1 34.586 133 55 1 44 176 14 114 2.49e-17 80.9
Msa0008460 AT5G35550.1 31.757 148 67 2 33 178 3 118 2.89e-17 79.7
Msa0008460 AT1G57560.1 32.738 168 97 5 97 264 35 186 2.95e-17 80.5
Msa0008460 AT2G32460.1 34.783 138 58 3 40 177 16 121 2.96e-17 81.6
Msa0008460 AT5G26660.1 46.341 82 44 0 97 178 35 116 2.96e-17 80.9
Msa0008460 AT2G32460.2 34.783 138 58 3 40 177 4 109 3.06e-17 81.6
Msa0008460 AT3G30210.1 33.835 133 56 2 44 176 29 129 3.14e-17 80.1
Msa0008460 AT1G08810.1 31.293 147 69 2 44 190 14 128 3.42e-17 80.1
Msa0008460 AT1G18710.1 32.593 135 59 2 44 178 14 116 3.90e-17 79.7
Msa0008460 AT2G31180.1 34.483 145 61 3 44 186 14 126 4.04e-17 79.3
Msa0008460 AT3G46130.1 34.815 135 56 3 44 178 11 113 4.06e-17 79.3
Msa0008460 AT5G59780.3 34.074 135 57 3 44 178 10 112 4.87e-17 78.6
Msa0008460 AT1G06180.1 32.484 157 71 4 44 199 14 136 5.21e-17 79.0
Msa0008460 AT4G22680.1 35.915 142 82 4 87 226 23 157 5.24e-17 79.3
Msa0008460 AT3G13540.1 26.702 191 98 6 44 234 25 173 5.35e-17 79.0
Msa0008460 AT1G74650.1 32.593 135 59 2 44 178 14 116 8.08e-17 79.7
Msa0008460 AT5G14340.1 40.426 94 54 1 87 178 35 128 1.12e-16 78.6
Msa0008460 AT5G62470.1 31.111 135 60 2 44 178 14 115 1.65e-16 79.0
Msa0008460 AT3G47600.1 30.345 145 68 2 44 187 14 126 1.71e-16 78.6
Msa0008460 AT5G62470.2 31.111 135 61 1 44 178 14 116 1.83e-16 78.6
Msa0008460 AT3G53200.2 47.059 68 36 0 110 177 12 79 1.84e-16 76.6
Msa0008460 AT3G53200.1 31.343 134 60 2 44 177 11 112 1.92e-16 77.0
Msa0008460 AT5G35550.2 47.826 69 36 0 110 178 53 121 2.68e-16 77.0
Msa0008460 AT4G25560.1 46.835 79 42 0 99 177 35 113 3.13e-16 77.4
Msa0008460 AT4G13480.1 32.593 135 59 1 44 178 8 110 4.50e-16 76.6
Msa0008460 AT5G56110.1 33.613 119 75 2 110 228 48 162 4.85e-16 77.0
Msa0008460 AT3G01530.1 31.092 119 82 0 96 214 47 165 5.29e-16 75.1
Msa0008460 AT5G39700.1 28.082 146 72 1 45 190 57 169 5.68e-16 74.7
Msa0008460 AT3G24310.1 32.836 134 58 1 44 177 20 121 5.98e-16 76.3
Msa0008460 AT5G52600.1 42.683 82 47 0 96 177 34 115 6.27e-16 75.1
Msa0008460 AT1G66230.1 42.553 94 52 1 87 178 23 116 6.55e-16 76.3
Msa0008460 AT5G16600.1 42.553 94 52 1 87 178 23 116 7.45e-16 76.6
Msa0008460 AT5G40350.1 30.370 135 62 1 44 178 19 121 9.90e-16 74.7
Msa0008460 AT3G28910.1 30.882 136 62 2 44 179 14 117 1.34e-15 75.9
Msa0008460 AT5G49330.1 41.573 89 52 0 96 184 34 122 1.65e-15 75.9
Msa0008460 AT3G60460.1 30.345 145 68 2 33 176 2 114 1.92e-15 75.1
Msa0008460 AT5G40350.2 44.928 69 38 0 110 178 8 76 2.39e-15 72.4
Msa0008460 AT1G25340.1 39.759 83 50 0 96 178 40 122 2.75e-15 74.7
Msa0008460 AT5G57620.1 37.037 135 78 4 110 242 49 178 2.85e-15 75.1
Msa0008460 AT1G68320.1 28.889 135 64 1 44 178 21 123 3.26e-15 74.3
Msa0008460 AT3G27810.1 29.630 135 63 1 44 178 22 124 3.57e-15 73.2
Msa0008460 AT5G62320.1 47.826 69 36 0 110 178 56 124 3.63e-15 73.6
Msa0008460 AT2G26950.1 31.538 130 57 3 43 172 17 114 3.72e-15 75.1
Msa0008460 AT3G28470.1 31.783 129 56 1 44 172 14 110 4.71e-15 74.3
Msa0008460 AT2G02820.3 38.158 76 47 0 103 178 56 131 4.89e-15 74.3
Msa0008460 AT3G47600.2 44.304 79 43 1 110 187 42 120 6.13e-15 73.9
Msa0008460 AT2G02820.1 38.158 76 47 0 103 178 56 131 7.64e-15 74.7
Msa0008460 AT1G14350.2 38.158 76 47 0 103 178 51 126 8.19e-15 74.3
Msa0008460 AT1G14350.1 38.158 76 47 0 103 178 51 126 8.19e-15 74.3
Msa0008460 AT3G27810.2 43.478 69 39 0 110 178 7 75 8.49e-15 71.2
Msa0008460 AT2G02820.2 38.158 76 47 0 103 178 56 131 8.51e-15 74.3
Msa0008460 AT1G66370.1 32.353 136 60 2 44 179 10 113 1.33e-14 72.0
Msa0008460 AT2G47460.1 47.826 69 36 0 110 178 48 116 2.49e-14 72.8
Msa0008460 AT5G59780.2 43.478 69 39 0 110 178 23 91 2.85e-14 70.5
Msa0008460 AT1G25340.3 35.714 98 48 1 96 178 20 117 3.07e-14 72.0
Msa0008460 AT1G25340.2 35.714 98 48 1 96 178 20 117 3.24e-14 71.6
Msa0008460 AT3G62610.1 42.169 83 48 0 96 178 34 116 3.59e-14 72.0
Msa0008460 AT3G46130.3 43.478 69 39 0 110 178 13 81 4.12e-14 70.5
Msa0008460 AT1G56650.1 27.358 212 115 5 35 241 1 178 4.93e-14 70.5
Msa0008460 AT3G46130.4 43.478 69 39 0 110 178 23 91 5.26e-14 70.1
Msa0008460 AT3G49690.1 40.385 104 41 3 96 178 14 117 6.62e-14 70.9
Msa0008460 AT5G52260.1 48.529 68 35 0 110 177 48 115 7.71e-14 70.5
Msa0008460 AT2G36890.1 41.463 82 48 0 97 178 36 117 9.24e-14 70.5
Msa0008460 AT2G36890.2 41.463 82 48 0 97 178 77 158 9.79e-14 70.9
Msa0008460 AT1G48000.1 36.471 85 54 0 96 180 54 138 1.19e-13 69.3
Msa0008460 AT4G37780.1 40.385 104 41 3 96 178 14 117 1.35e-13 70.1
Msa0008460 AT5G65790.1 39.423 104 42 3 96 178 14 117 1.59e-13 70.5
Msa0008460 AT5G23000.1 40.244 82 49 0 97 178 36 117 4.06e-13 68.9
Msa0008460 AT3G23250.2 44.737 76 32 1 121 196 2 67 8.17e-13 66.6
Msa0008460 AT5G49620.1 29.167 144 65 2 44 182 28 139 1.25e-12 67.4
Msa0008460 AT5G14750.4 43.333 60 34 0 121 180 2 61 2.13e-12 63.9
Msa0008460 AT5G14750.2 43.333 60 34 0 121 180 2 61 2.13e-12 63.9
Msa0008460 AT1G22640.3 44.615 65 35 1 121 185 2 65 3.75e-12 64.3
Msa0008460 AT1G66380.1 30.769 143 67 1 35 177 1 111 4.45e-12 62.8
Msa0008460 AT3G06490.1 33.913 115 51 3 93 182 18 132 5.45e-12 65.5
Msa0008460 AT1G14350.3 40.984 61 36 0 118 178 23 83 8.11e-12 65.5
Msa0008460 AT1G14350.4 40.984 61 36 0 118 178 23 83 8.11e-12 65.5
Msa0008460 AT1G66390.1 30.769 143 67 1 35 177 1 111 1.27e-11 63.5
Msa0008460 AT1G71030.1 37.879 66 41 0 113 178 19 84 1.58e-11 62.4
Msa0008460 AT1G71030.2 37.879 66 41 0 113 178 5 70 1.62e-11 62.4

Find 62 sgRNAs with CRISPR-Local

Find 229 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGCAGCTGCTTGTGTTAC+TGG 0.142973 1_1:+12146563 Msa0008460:intron
TTTGATTCTAATTGCGTCTT+AGG 0.190116 1_1:-12148803 None:intergenic
CAAGAAAGCAATTCCGTTCT+TGG 0.201902 1_1:+12144885 Msa0008460:CDS
ATCAAGACTCACAAAATATA+TGG 0.210499 1_1:+12147055 Msa0008460:CDS
TGCATGGATGTTAGTGTTCT+TGG 0.215594 1_1:-12148637 None:intergenic
CCTTTAGTTGATCTTCTTGT+AGG 0.220569 1_1:-12145894 None:intergenic
ATACCTTCCATGCAGAAATT+TGG 0.243914 1_1:-12147098 None:intergenic
TCTTTATATCTGGATTTAAA+TGG 0.268979 1_1:-12146997 None:intergenic
TAGAGTCGACTCCTCTTCTT+TGG 0.300498 1_1:-12147032 None:intergenic
GTATCAATGCTTGTTTCAAC+TGG 0.312381 1_1:-12148558 None:intergenic
AAGCACTTAATATATCTCTT+AGG 0.330862 1_1:-12148740 None:intergenic
ACAAAATATATGGGAATAGT+TGG 0.337373 1_1:+12147065 Msa0008460:CDS
TAATTGCGTCTTAGGATAGA+TGG 0.344686 1_1:-12148795 None:intergenic
GAATTGCTCTTTGAAGAAAA+AGG 0.365014 1_1:+12148482 Msa0008460:CDS
AGCTGTATCATAGTCAGTTC+TGG 0.376506 1_1:-12148532 None:intergenic
CTTGCATTGTCTATGCTTTG+AGG 0.391340 1_1:-12148594 None:intergenic
GTTTCTTCTGTAGAATTTGA+TGG 0.395878 1_1:-12148696 None:intergenic
GCATGGATGTTAGTGTTCTT+GGG 0.426629 1_1:-12148636 None:intergenic
ATGTTCAATGTCTGCATCGC+TGG 0.431569 1_1:+12146594 Msa0008460:CDS
AACATGACAAAGATTTGAAT+CGG 0.447727 1_1:+12144844 Msa0008460:CDS
CAAAGGACCTTGGTCAGAAC+AGG 0.449291 1_1:+12146643 Msa0008460:CDS
ATTTGATGGGTTATTACAAA+GGG 0.451203 1_1:-12148682 None:intergenic
GACTCCTCTTCTTTGGTCCA+TGG 0.454598 1_1:-12147025 None:intergenic
CAAGGTCCTTTGATAAGATC+AGG 0.456953 1_1:-12146632 None:intergenic
CACTAACCGTTGTTGAATAG+AGG 0.469040 1_1:-12144922 None:intergenic
TTTACCTATGCGACCTGGTA+AGG 0.469131 1_1:-12146841 None:intergenic
TCAAGACTCACAAAATATAT+GGG 0.469743 1_1:+12147056 Msa0008460:CDS
CAAAATATATGGGAATAGTT+GGG 0.478966 1_1:+12147066 Msa0008460:CDS
ATGTCTGCATCGCTGGCAAA+AGG 0.482193 1_1:+12146601 Msa0008460:CDS
TTTCTTCTGTAGAATTTGAT+GGG 0.498863 1_1:-12148695 None:intergenic
AAAACTCTATCAAGAACCAT+TGG 0.516944 1_1:+12148460 Msa0008460:CDS
TAGGTAAACAATGTAGAGAA+AGG 0.521859 1_1:+12146856 Msa0008460:CDS
CAGGTAGCAAAGTCCTTACC+AGG 0.531555 1_1:+12146828 Msa0008460:intron
TATCAATGCTTGTTTCAACT+GGG 0.537247 1_1:-12148557 None:intergenic
TAGCCAAATTTCTGCATGGA+AGG 0.541115 1_1:+12147095 Msa0008460:CDS
AATTTGATGGGTTATTACAA+AGG 0.542044 1_1:-12148683 None:intergenic
GAAGATCAACTAAAGGAGGC+TGG 0.544707 1_1:+12145901 Msa0008460:CDS
GTGCTTTAAAGACTTCTGCT+AGG 0.545613 1_1:+12148757 Msa0008460:CDS
ATTTGTACCTGTTCTGACCA+AGG 0.555478 1_1:-12146650 None:intergenic
CTGAATCCTGATCTTATCAA+AGG 0.558658 1_1:+12146626 Msa0008460:CDS
ACATGACAAAGATTTGAATC+GGG 0.560128 1_1:+12144845 Msa0008460:CDS
AACCGTTGTTGAATAGAGGC+AGG 0.565230 1_1:-12144918 None:intergenic
ATGACTAATAGAAGGGTGAC+TGG 0.565778 1_1:+12145870 Msa0008460:intron
CTGATCTTATCAAAGGACCT+TGG 0.567133 1_1:+12146633 Msa0008460:CDS
CCTACAAGAAGATCAACTAA+AGG 0.583785 1_1:+12145894 Msa0008460:CDS
CTTAATATATCTCTTAGGCT+AGG 0.583832 1_1:-12148735 None:intergenic
AGGAGGCTGGACAGAGAAGG+AGG 0.589108 1_1:+12145914 Msa0008460:CDS
CATTGTTTACCTATGCGACC+TGG 0.593105 1_1:-12146846 None:intergenic
TCTTCAAAGAGCAATTCCAA+TGG 0.603151 1_1:-12148476 None:intergenic
CAGATATAAAGAAAACTCCA+TGG 0.607480 1_1:+12147008 Msa0008460:CDS
ACAAGAAGATCAACTAAAGG+AGG 0.608718 1_1:+12145897 Msa0008460:CDS
TAAAGGAGGCTGGACAGAGA+AGG 0.611791 1_1:+12145911 Msa0008460:CDS
AACTCCATGGACCAAAGAAG+AGG 0.612896 1_1:+12147021 Msa0008460:CDS
AAGTCCTTACCAGGTCGCAT+AGG 0.617150 1_1:+12146837 Msa0008460:CDS
GAAATAGCCAAATTTCTGCA+TGG 0.618995 1_1:+12147091 Msa0008460:CDS
AACAAGCATTGATACAAATG+TGG 0.621717 1_1:+12148566 Msa0008460:CDS
ATCAATGCTTGTTTCAACTG+GGG 0.635613 1_1:-12148556 None:intergenic
TGTATCATAGTCAGTTCTGG+AGG 0.644057 1_1:-12148529 None:intergenic
AGGTCTTTGAGTTCCAAGAA+CGG 0.645576 1_1:-12144898 None:intergenic
GGTTGATTTAAATACCTCAG+TGG 0.679208 1_1:+12148503 Msa0008460:CDS
GACCTGCCTCTATTCAACAA+CGG 0.701726 1_1:+12144916 Msa0008460:CDS
AGTTCTGGAGGTGTCCACTG+AGG 0.722816 1_1:-12148517 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTTTTTTTTATTTAAA+TGG + chr1_1:12147666-12147685 Msa0008460:intron 0.0%
!!! TATTTTTTTTTTATTTAAAT+GGG + chr1_1:12147667-12147686 Msa0008460:intron 0.0%
!!! ATATATATAGTTTAAAATTG+CGG - chr1_1:12145142-12145161 None:intergenic 10.0%
!! ATTAAAAAATCTATTTGATT+TGG + chr1_1:12146470-12146489 Msa0008460:intron 10.0%
!!! TTCAAAAAAAAAAATGTTTT+AGG - chr1_1:12147157-12147176 None:intergenic 10.0%
!!! TTTTTTTTTTATTTAAATGG+GGG + chr1_1:12147669-12147688 Msa0008460:intron 10.0%
!!! TAATTTATGTTTAATGTTTT+TGG + chr1_1:12148416-12148435 Msa0008460:intron 10.0%
!!! AATTTATGTTTAATGTTTTT+GGG + chr1_1:12148417-12148436 Msa0008460:intron 10.0%
!! ATTACTAACATACATAAATA+GGG - chr1_1:12145182-12145201 None:intergenic 15.0%
!! TATTACTAACATACATAAAT+AGG - chr1_1:12145183-12145202 None:intergenic 15.0%
!! ATGTATGTTAGTAATATTAT+AGG + chr1_1:12145187-12145206 Msa0008460:intron 15.0%
!!! ATTCTTTTTAATACTATTAG+TGG - chr1_1:12145381-12145400 None:intergenic 15.0%
!! TTAAAAGACTATTTCATATT+TGG - chr1_1:12146435-12146454 None:intergenic 15.0%
!!! AACATTTTTGTTTTTCTTTT+AGG + chr1_1:12146966-12146985 Msa0008460:intron 15.0%
!!! CATTTTAAATATCATGTTTT+AGG - chr1_1:12147190-12147209 None:intergenic 15.0%
!!! AATGACATTTTTATTTTACT+AGG - chr1_1:12147314-12147333 None:intergenic 15.0%
!!! ATTAAGTGATTTTACAAATT+GGG + chr1_1:12147551-12147570 Msa0008460:intron 15.0%
!!! TTTTTTTTTATTTAAATGGG+GGG + chr1_1:12147670-12147689 Msa0008460:intron 15.0%
!! ATCATTAGTACATAAATTTA+GGG - chr1_1:12148310-12148329 None:intergenic 15.0%
!!! ATTTATGTTTAATGTTTTTG+GGG + chr1_1:12148418-12148437 Msa0008460:intron 15.0%
!! GAAACAATTTAATCTTAGAA+AGG + chr1_1:12144989-12145008 Msa0008460:intron 20.0%
!!! TTGTTTTCATATTTGACAAT+TGG - chr1_1:12145224-12145243 None:intergenic 20.0%
!!! AAGTAACTTTAAGAATTGAA+TGG - chr1_1:12145954-12145973 None:intergenic 20.0%
!!! AAAAGTATAATGGAAAAAGT+TGG + chr1_1:12146099-12146118 Msa0008460:CDS 20.0%
!!! GAAGAAAGTATGAAAATTTA+TGG - chr1_1:12146149-12146168 None:intergenic 20.0%
!!! AATCTATTTGATTTGGAAAA+TGG + chr1_1:12146477-12146496 Msa0008460:intron 20.0%
!!! ATCTATTTGATTTGGAAAAT+GGG + chr1_1:12146478-12146497 Msa0008460:intron 20.0%
!! TAATAATTAACCACTGAAAT+TGG + chr1_1:12146709-12146728 Msa0008460:intron 20.0%
!!! TTTTAATTAACCACTGAATT+TGG + chr1_1:12146743-12146762 Msa0008460:intron 20.0%
!! AAGATAAATGGGAAAAAAAT+TGG + chr1_1:12146802-12146821 Msa0008460:intron 20.0%
!!! ATTTTTGTTTTTCTTTTAGG+TGG + chr1_1:12146969-12146988 Msa0008460:intron 20.0%
!! TCTTTATATCTGGATTTAAA+TGG - chr1_1:12147000-12147019 None:intergenic 20.0%
!! AAAAAAGATATATAGATGAG+AGG + chr1_1:12147215-12147234 Msa0008460:intron 20.0%
!!! GATTAAGTGATTTTACAAAT+TGG + chr1_1:12147550-12147569 Msa0008460:intron 20.0%
!!! TTAAGTGATTTTACAAATTG+GGG + chr1_1:12147552-12147571 Msa0008460:intron 20.0%
!!! TAGACTTAATTTTTTGTTTG+AGG + chr1_1:12147700-12147719 Msa0008460:intron 20.0%
!!! ATCTTATTTTAACATGTTCA+AGG - chr1_1:12147829-12147848 None:intergenic 20.0%
!! TGAAAAAGAAACTATAGATA+AGG + chr1_1:12148014-12148033 Msa0008460:intron 20.0%
!! GATCATTAGTACATAAATTT+AGG - chr1_1:12148311-12148330 None:intergenic 20.0%
!! AATTATGTTGTTCTAACAAT+TGG + chr1_1:12148346-12148365 Msa0008460:intron 20.0%
! AACATGACAAAGATTTGAAT+CGG + chr1_1:12144844-12144863 Msa0008460:CDS 25.0%
! AAAGGTTTATGTGACATTAT+AGG + chr1_1:12145039-12145058 Msa0008460:intron 25.0%
! CAAATAATGCAAAACTAGAA+AGG - chr1_1:12145765-12145784 None:intergenic 25.0%
! TTCTATTAGTCATGATAACA+AGG - chr1_1:12145863-12145882 None:intergenic 25.0%
! TTGTTATCATGACTAATAGA+AGG + chr1_1:12145862-12145881 Msa0008460:intron 25.0%
! TGTTATCATGACTAATAGAA+GGG + chr1_1:12145863-12145882 Msa0008460:intron 25.0%
!! TGTATACATGATGATGTTAT+TGG - chr1_1:12146015-12146034 None:intergenic 25.0%
!!! TTTCTTGTTTTCTCATTTAC+AGG + chr1_1:12146052-12146071 Msa0008460:intron 25.0%
!! TTTTCATACTTTCTTCTCTT+AGG + chr1_1:12146153-12146172 Msa0008460:intron 25.0%
! AAAACATCGATCTTGAAATT+TGG - chr1_1:12146303-12146322 None:intergenic 25.0%
! ATCAAGACTCACAAAATATA+TGG + chr1_1:12147055-12147074 Msa0008460:CDS 25.0%
! TCAAGACTCACAAAATATAT+GGG + chr1_1:12147056-12147075 Msa0008460:CDS 25.0%
! ACAAAATATATGGGAATAGT+TGG + chr1_1:12147065-12147084 Msa0008460:CDS 25.0%
! CAAAATATATGGGAATAGTT+GGG + chr1_1:12147066-12147085 Msa0008460:CDS 25.0%
! AATCACTTAATCAGTCAATT+TGG - chr1_1:12147542-12147561 None:intergenic 25.0%
! AATCAGATTTATGTACAGAA+AGG + chr1_1:12147587-12147606 Msa0008460:intron 25.0%
!!! TTTGAGTTTTTTTTAGACTC+TGG - chr1_1:12147617-12147636 None:intergenic 25.0%
! TCAATCCATTAAAATGAATC+CGG - chr1_1:12147930-12147949 None:intergenic 25.0%
!! ACTTTAGTGTATCTTTTGAA+AGG + chr1_1:12147985-12148004 Msa0008460:intron 25.0%
!!! CTTTAGTGTATCTTTTGAAA+GGG + chr1_1:12147986-12148005 Msa0008460:intron 25.0%
! CTAAGTACATAGCATTAAAA+TGG - chr1_1:12148113-12148132 None:intergenic 25.0%
!!! CATTTTAATGCTATGTACTT+AGG + chr1_1:12148111-12148130 Msa0008460:intron 25.0%
! AGTACATAAATTTAGGGATT+TGG - chr1_1:12148304-12148323 None:intergenic 25.0%
!!! AAATTGAAGTATTTTGTGCA+TGG - chr1_1:12148656-12148675 None:intergenic 25.0%
!!! ATTTGATGGGTTATTACAAA+GGG - chr1_1:12148685-12148704 None:intergenic 25.0%
!!! AATTTGATGGGTTATTACAA+AGG - chr1_1:12148686-12148705 None:intergenic 25.0%
! TTTCTTCTGTAGAATTTGAT+GGG - chr1_1:12148698-12148717 None:intergenic 25.0%
! AAGCACTTAATATATCTCTT+AGG - chr1_1:12148743-12148762 None:intergenic 25.0%
ACATGACAAAGATTTGAATC+GGG + chr1_1:12144845-12144864 Msa0008460:CDS 30.0%
TCTTTATATTACAGCTGATG+CGG + chr1_1:12145097-12145116 Msa0008460:intron 30.0%
AACAAACTAATGTTCAGCTA+GGG + chr1_1:12145304-12145323 Msa0008460:intron 30.0%
!!! CTAGTTTTGCATTATTTGTG+TGG + chr1_1:12145767-12145786 Msa0008460:intron 30.0%
TATTGGCAAGAAATTCTCTT+TGG - chr1_1:12145998-12146017 None:intergenic 30.0%
GGAAAAAGTTGGAAAAAGAT+AGG + chr1_1:12146110-12146129 Msa0008460:CDS 30.0%
GCTATTGAAATAGTCAGATT+TGG + chr1_1:12146204-12146223 Msa0008460:intron 30.0%
TAGGTAAACAATGTAGAGAA+AGG + chr1_1:12146856-12146875 Msa0008460:CDS 30.0%
! CATGGAGTTTTCTTTATATC+TGG - chr1_1:12147010-12147029 None:intergenic 30.0%
CAGATATAAAGAAAACTCCA+TGG + chr1_1:12147008-12147027 Msa0008460:CDS 30.0%
! ATTTACATAACAGTGTCGTT+TGG + chr1_1:12147428-12147447 Msa0008460:intron 30.0%
!!! TTTTTTATTTAAATGGGGGG+TGG + chr1_1:12147673-12147692 Msa0008460:intron 30.0%
CAGACCTCTTACAAAATTTA+GGG + chr1_1:12147796-12147815 Msa0008460:intron 30.0%
! ACTACCCTAAATTTTGTAAG+AGG - chr1_1:12147803-12147822 None:intergenic 30.0%
ACATAGACAAGTTGCAATAA+AGG + chr1_1:12147852-12147871 Msa0008460:intron 30.0%
! TAGATCCGGATTCATTTTAA+TGG + chr1_1:12147922-12147941 Msa0008460:intron 30.0%
TAGAAGAGAGATAAACACAA+AGG + chr1_1:12148052-12148071 Msa0008460:intron 30.0%
AACTAGACAAGTTAACATGT+CGG + chr1_1:12148170-12148189 Msa0008460:intron 30.0%
!!! TTTTGGGGTAAAATTTGAAC+AGG + chr1_1:12148433-12148452 Msa0008460:intron 30.0%
AAAACTCTATCAAGAACCAT+TGG + chr1_1:12148460-12148479 Msa0008460:CDS 30.0%
! GAATTGCTCTTTGAAGAAAA+AGG + chr1_1:12148482-12148501 Msa0008460:CDS 30.0%
TATCAATGCTTGTTTCAACT+GGG - chr1_1:12148560-12148579 None:intergenic 30.0%
!! AACAAGCATTGATACAAATG+TGG + chr1_1:12148566-12148585 Msa0008460:CDS 30.0%
GTTTCTTCTGTAGAATTTGA+TGG - chr1_1:12148699-12148718 None:intergenic 30.0%
CTTAATATATCTCTTAGGCT+AGG - chr1_1:12148738-12148757 None:intergenic 30.0%
CATGTGCAGTTACATCAAAA+AGG + chr1_1:12145021-12145040 Msa0008460:intron 35.0%
! GAGTGTCTTATTGTAGCTTT+CGG + chr1_1:12145262-12145281 Msa0008460:intron 35.0%
GAACAAACTAATGTTCAGCT+AGG + chr1_1:12145303-12145322 Msa0008460:intron 35.0%
TATCTCATGTTTGGCGAAAA+AGG + chr1_1:12145328-12145347 Msa0008460:intron 35.0%
TAATACTATTAGTGGCAGTG+TGG - chr1_1:12145373-12145392 None:intergenic 35.0%
ACCAGAGTTCGAATTATCAT+TGG + chr1_1:12145589-12145608 Msa0008460:intron 35.0%
ACCAATGATAATTCGAACTC+TGG - chr1_1:12145593-12145612 None:intergenic 35.0%
ATGACCTTTATGTGAATGCA+TGG + chr1_1:12145676-12145695 Msa0008460:intron 35.0%
TGACCTTTATGTGAATGCAT+GGG + chr1_1:12145677-12145696 Msa0008460:intron 35.0%
CCTTTAGTTGATCTTCTTGT+AGG - chr1_1:12145897-12145916 None:intergenic 35.0%
CCTACAAGAAGATCAACTAA+AGG + chr1_1:12145894-12145913 Msa0008460:CDS 35.0%
ACAAGAAGATCAACTAAAGG+AGG + chr1_1:12145897-12145916 Msa0008460:CDS 35.0%
TCTTTGGTTGAACAGTTTCT+TGG - chr1_1:12145982-12146001 None:intergenic 35.0%
! GCTGCTGTGAAAAAGTATAA+TGG + chr1_1:12146089-12146108 Msa0008460:CDS 35.0%
GTATTAGTATCGTTCACACT+TGG + chr1_1:12146272-12146291 Msa0008460:intron 35.0%
CATTCACGTAGTAAACAGAT+CGG - chr1_1:12146389-12146408 None:intergenic 35.0%
CTGAATCCTGATCTTATCAA+AGG + chr1_1:12146626-12146645 Msa0008460:CDS 35.0%
AGCATAATCTCCAATTTCAG+TGG - chr1_1:12146722-12146741 None:intergenic 35.0%
!! AGCGAGCTTGTTAAGATAAA+TGG + chr1_1:12146790-12146809 Msa0008460:intron 35.0%
!! GCGAGCTTGTTAAGATAAAT+GGG + chr1_1:12146791-12146810 Msa0008460:intron 35.0%
! ATGGGAAAAAAATTGGTCTC+AGG + chr1_1:12146809-12146828 Msa0008460:intron 35.0%
GAAATAGCCAAATTTCTGCA+TGG + chr1_1:12147091-12147110 Msa0008460:CDS 35.0%
ATACCTTCCATGCAGAAATT+TGG - chr1_1:12147101-12147120 None:intergenic 35.0%
AGATGAGAGGATACATAGAT+AGG + chr1_1:12147228-12147247 Msa0008460:intron 35.0%
ATAGATAGGTCTAGTGATCA+GGG + chr1_1:12147242-12147261 Msa0008460:intron 35.0%
! AGCCTCTTATTTCATAGGAA+CGG - chr1_1:12147268-12147287 None:intergenic 35.0%
TTCCTATGAAATAAGAGGCT+CGG + chr1_1:12147268-12147287 Msa0008460:intron 35.0%
!!! CTCGGCTCTCTTTTTAAAAT+AGG + chr1_1:12147286-12147305 Msa0008460:intron 35.0%
GGGAAAACAAATGGTTTATG+CGG + chr1_1:12147476-12147495 Msa0008460:intron 35.0%
! AGTGATTTTACAAATTGGGG+TGG + chr1_1:12147555-12147574 Msa0008460:intron 35.0%
GCAGACCTCTTACAAAATTT+AGG + chr1_1:12147795-12147814 Msa0008460:intron 35.0%
! TAGTGACTTTTCCGTCTTAA+AGG + chr1_1:12147896-12147915 Msa0008460:intron 35.0%
TTGAGATTCGATGACTTTGA+TGG + chr1_1:12147946-12147965 Msa0008460:intron 35.0%
! TTTTCCGTCTTAAAGATAGC+AGG + chr1_1:12148079-12148098 Msa0008460:intron 35.0%
ATCATTAGAGTGCATATGAG+AGG + chr1_1:12148276-12148295 Msa0008460:intron 35.0%
CTAACAATTGGAATCCCTAT+AGG + chr1_1:12148358-12148377 Msa0008460:intron 35.0%
CTCACTTCATAAGTCCTATA+GGG - chr1_1:12148375-12148394 None:intergenic 35.0%
CTATAGGACTTATGAAGTGA+GGG + chr1_1:12148374-12148393 Msa0008460:intron 35.0%
TCTTCAAAGAGCAATTCCAA+TGG - chr1_1:12148479-12148498 None:intergenic 35.0%
! GGTTGATTTAAATACCTCAG+TGG + chr1_1:12148503-12148522 Msa0008460:CDS 35.0%
ATCAATGCTTGTTTCAACTG+GGG - chr1_1:12148559-12148578 None:intergenic 35.0%
GTATCAATGCTTGTTTCAAC+TGG - chr1_1:12148561-12148580 None:intergenic 35.0%
! CAATGCAAGTCATGACTTTT+TGG + chr1_1:12148608-12148627 Msa0008460:CDS 35.0%
CAAGAAAGCAATTCCGTTCT+TGG + chr1_1:12144885-12144904 Msa0008460:CDS 40.0%
! AGGTCTTTGAGTTCCAAGAA+CGG - chr1_1:12144901-12144920 None:intergenic 40.0%
CACTAACCGTTGTTGAATAG+AGG - chr1_1:12144925-12144944 None:intergenic 40.0%
! TATAGGTTAGCTGCGATTCT+AGG + chr1_1:12145056-12145075 Msa0008460:intron 40.0%
CAATAAGACACTCTATCAGC+TGG - chr1_1:12145255-12145274 None:intergenic 40.0%
AGCTAGGGTTATCTCATGTT+TGG + chr1_1:12145319-12145338 Msa0008460:intron 40.0%
TGATAATCCAAAACTCGCTC+AGG - chr1_1:12145632-12145651 None:intergenic 40.0%
GATCCCATGCATTCACATAA+AGG - chr1_1:12145683-12145702 None:intergenic 40.0%
ATGACTAATAGAAGGGTGAC+TGG + chr1_1:12145870-12145889 Msa0008460:intron 40.0%
ACAAATTCCACGTACTCACA+CGG + chr1_1:12146240-12146259 Msa0008460:intron 40.0%
TAGTATCGTTCACACTTGGA+TGG + chr1_1:12146276-12146295 Msa0008460:intron 40.0%
GTAAACAGATCGGTAACTGT+TGG - chr1_1:12146379-12146398 None:intergenic 40.0%
CAAGGTCCTTTGATAAGATC+AGG - chr1_1:12146635-12146654 None:intergenic 40.0%
CTGATCTTATCAAAGGACCT+TGG + chr1_1:12146633-12146652 Msa0008460:CDS 40.0%
ATTTGTACCTGTTCTGACCA+AGG - chr1_1:12146653-12146672 None:intergenic 40.0%
TAGCCAAATTTCTGCATGGA+AGG + chr1_1:12147095-12147114 Msa0008460:CDS 40.0%
!! TCTGCATGGAAGGTATTGAT+AGG + chr1_1:12147105-12147124 Msa0008460:intron 40.0%
CATAGATAGGTCTAGTGATC+AGG + chr1_1:12147241-12147260 Msa0008460:intron 40.0%
ATTTGTCACTCCTTCGTTGT+GGG + chr1_1:12147451-12147470 Msa0008460:intron 40.0%
TTGTGGGAAGGGAAAACAAA+TGG + chr1_1:12147467-12147486 Msa0008460:intron 40.0%
! CGGATCTACTACCTTTAAGA+CGG - chr1_1:12147910-12147929 None:intergenic 40.0%
CGTCTTAAAGGTAGTAGATC+CGG + chr1_1:12147908-12147927 Msa0008460:intron 40.0%
AGATTCGATGACTTTGATGG+CGG + chr1_1:12147949-12147968 Msa0008460:intron 40.0%
! CGAACCTGCTATCTTTAAGA+CGG - chr1_1:12148086-12148105 None:intergenic 40.0%
CCTCACTTCATAAGTCCTAT+AGG - chr1_1:12148376-12148395 None:intergenic 40.0%
CCTATAGGACTTATGAAGTG+AGG + chr1_1:12148373-12148392 Msa0008460:intron 40.0%
! TGTATCATAGTCAGTTCTGG+AGG - chr1_1:12148532-12148551 None:intergenic 40.0%
AGCTGTATCATAGTCAGTTC+TGG - chr1_1:12148535-12148554 None:intergenic 40.0%
CTTGCATTGTCTATGCTTTG+AGG - chr1_1:12148597-12148616 None:intergenic 40.0%
GCATGGATGTTAGTGTTCTT+GGG - chr1_1:12148639-12148658 None:intergenic 40.0%
TGCATGGATGTTAGTGTTCT+TGG - chr1_1:12148640-12148659 None:intergenic 40.0%
!! GTGCTTTAAAGACTTCTGCT+AGG + chr1_1:12148757-12148776 Msa0008460:CDS 40.0%
GACCTGCCTCTATTCAACAA+CGG + chr1_1:12144916-12144935 Msa0008460:CDS 45.0%
AACCGTTGTTGAATAGAGGC+AGG - chr1_1:12144921-12144940 None:intergenic 45.0%
TTAGCTGCGATTCTAGGTTG+CGG + chr1_1:12145062-12145081 Msa0008460:intron 45.0%
TAATCCAAAACTCGCTCAGG+AGG - chr1_1:12145629-12145648 None:intergenic 45.0%
GAAGATCAACTAAAGGAGGC+TGG + chr1_1:12145901-12145920 Msa0008460:CDS 45.0%
CAAATTCCACGTACTCACAC+GGG + chr1_1:12146241-12146260 Msa0008460:intron 45.0%
! TCGAGATCGAAAGGTGCAAA+AGG - chr1_1:12146355-12146374 None:intergenic 45.0%
ACTGTTGGATCGAGATCGAA+AGG - chr1_1:12146364-12146383 None:intergenic 45.0%
AGTAACACAAGCAGCTGCAA+GGG - chr1_1:12146564-12146583 None:intergenic 45.0%
ATGTTCAATGTCTGCATCGC+TGG + chr1_1:12146594-12146613 Msa0008460:CDS 45.0%
CCTGCAAACTCCAAATTCAG+TGG - chr1_1:12146756-12146775 None:intergenic 45.0%
! CCACTGAATTTGGAGTTTGC+AGG + chr1_1:12146753-12146772 Msa0008460:intron 45.0%
TTTACCTATGCGACCTGGTA+AGG - chr1_1:12146844-12146863 None:intergenic 45.0%
CATTGTTTACCTATGCGACC+TGG - chr1_1:12146849-12146868 None:intergenic 45.0%
AACTCCATGGACCAAAGAAG+AGG + chr1_1:12147021-12147040 Msa0008460:CDS 45.0%
! TAGAGTCGACTCCTCTTCTT+TGG - chr1_1:12147035-12147054 None:intergenic 45.0%
GGCCGTTCCTATGAAATAAG+AGG + chr1_1:12147263-12147282 Msa0008460:intron 45.0%
! AGCCGAGCCTCTTATTTCAT+AGG - chr1_1:12147273-12147292 None:intergenic 45.0%
GATTTGTCACTCCTTCGTTG+TGG + chr1_1:12147450-12147469 Msa0008460:intron 45.0%
! TGTTTGAGGCCCGTAACATT+TGG + chr1_1:12147714-12147733 Msa0008460:intron 45.0%
AGGTCTGCTTAATCACTAGC+AGG - chr1_1:12147783-12147802 None:intergenic 45.0%
! GATTCGATGACTTTGATGGC+GGG + chr1_1:12147950-12147969 Msa0008460:intron 45.0%
!!! ATTTTTTTTTTATTTAAATG+GGG + chr1_1:12147668-12147687 Msa0008460:intron 5.0%
! CTAACCTCCTGAGCGAGTTT+TGG + chr1_1:12145622-12145641 Msa0008460:intron 50.0%
TAAAGGAGGCTGGACAGAGA+AGG + chr1_1:12145911-12145930 Msa0008460:CDS 50.0%
AGCAGCTGCAAGGGATAATG+TGG - chr1_1:12146555-12146574 None:intergenic 50.0%
CAGTAACACAAGCAGCTGCA+AGG - chr1_1:12146565-12146584 None:intergenic 50.0%
CTTGCAGCTGCTTGTGTTAC+TGG + chr1_1:12146563-12146582 Msa0008460:intron 50.0%
ATGTCTGCATCGCTGGCAAA+AGG + chr1_1:12146601-12146620 Msa0008460:CDS 50.0%
CAAAGGACCTTGGTCAGAAC+AGG + chr1_1:12146643-12146662 Msa0008460:CDS 50.0%
CAGGTAGCAAAGTCCTTACC+AGG + chr1_1:12146828-12146847 Msa0008460:intron 50.0%
AAGTCCTTACCAGGTCGCAT+AGG + chr1_1:12146837-12146856 Msa0008460:CDS 50.0%
GACTCCTCTTCTTTGGTCCA+TGG - chr1_1:12147028-12147047 None:intergenic 50.0%
TCACTCCTTCGTTGTGGGAA+GGG + chr1_1:12147456-12147475 Msa0008460:intron 50.0%
! GTTTTCCCTTCCCACAACGA+AGG - chr1_1:12147464-12147483 None:intergenic 50.0%
TTGAGGCCCGTAACATTTGG+AGG + chr1_1:12147717-12147736 Msa0008460:intron 50.0%
GCATCGTTCTAGTGTGAGAG+AGG - chr1_1:12148198-12148217 None:intergenic 50.0%
AGCTGATGCGGCTGAGATTG+CGG + chr1_1:12145109-12145128 Msa0008460:intron 55.0%
ATGAGTCGAACTCGCTCAGG+AGG - chr1_1:12145528-12145547 None:intergenic 55.0%
CACATGAGTCGAACTCGCTC+AGG - chr1_1:12145531-12145550 None:intergenic 55.0%
CTGAGCGAGTTCGACTCATG+TGG + chr1_1:12145529-12145548 Msa0008460:intron 55.0%
GCTGGACAGAGAAGGAGGTA+AGG + chr1_1:12145919-12145938 Msa0008460:intron 55.0%
AAGCTACCCGTGTGAGTACG+TGG - chr1_1:12146250-12146269 None:intergenic 55.0%
GTCACTCCTTCGTTGTGGGA+AGG + chr1_1:12147455-12147474 Msa0008460:intron 55.0%
!! AGTTCTGGAGGTGTCCACTG+AGG - chr1_1:12148520-12148539 None:intergenic 55.0%
AGGAGGCTGGACAGAGAAGG+AGG + chr1_1:12145914-12145933 Msa0008460:CDS 60.0%
GCCCGTAACATTTGGAGGCC+CGG + chr1_1:12147722-12147741 Msa0008460:intron 60.0%
GCCGGGCCTCCAAATGTTAC+GGG - chr1_1:12147726-12147745 None:intergenic 60.0%
GGCCGGGCCTCCAAATGTTA+CGG - chr1_1:12147727-12147746 None:intergenic 60.0%
TAACATTTGGAGGCCCGGCC+TGG + chr1_1:12147727-12147746 Msa0008460:intron 60.0%
! TGCAAGGTGCTCTACCAGGC+CGG - chr1_1:12147744-12147763 None:intergenic 60.0%
! GGAGTGCAAGGTGCTCTACC+AGG - chr1_1:12147748-12147767 None:intergenic 60.0%
ACCTTGCACTCCCCCAAGGT+CGG + chr1_1:12147756-12147775 Msa0008460:intron 60.0%
TCACTAGCAGGCCCGACCTT+GGG - chr1_1:12147771-12147790 None:intergenic 60.0%
ATCACTAGCAGGCCCGACCT+TGG - chr1_1:12147772-12147791 None:intergenic 60.0%
! GCAAGGTGCTCTACCAGGCC+GGG - chr1_1:12147743-12147762 None:intergenic 65.0%
GAGCACCTTGCACTCCCCCA+AGG + chr1_1:12147752-12147771 Msa0008460:intron 65.0%
CCTTGCACTCCCCCAAGGTC+GGG + chr1_1:12147757-12147776 Msa0008460:intron 65.0%
ACTAGCAGGCCCGACCTTGG+GGG - chr1_1:12147769-12147788 None:intergenic 65.0%
CACTAGCAGGCCCGACCTTG+GGG - chr1_1:12147770-12147789 None:intergenic 65.0%
! CCCGACCTTGGGGGAGTGCA+AGG - chr1_1:12147760-12147779 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 12144826 12148815 12144826 ID=Msa0008460;Name=Msa0008460
chr1_1 mRNA 12144826 12148815 12144826 ID=Msa0008460-mRNA-1;Parent=Msa0008460;Name=Msa0008460-mRNA-1;_AED=0.50;_eAED=0.50;_QI=14|0|0|0.57|0.66|0.71|7|0|281
chr1_1 exon 12144826 12144937 12144826 ID=Msa0008460-mRNA-1:exon:4593;Parent=Msa0008460-mRNA-1
chr1_1 exon 12145881 12145935 12145881 ID=Msa0008460-mRNA-1:exon:4594;Parent=Msa0008460-mRNA-1
chr1_1 exon 12146074 12146131 12146074 ID=Msa0008460-mRNA-1:exon:4595;Parent=Msa0008460-mRNA-1
chr1_1 exon 12146570 12146664 12146570 ID=Msa0008460-mRNA-1:exon:4596;Parent=Msa0008460-mRNA-1
chr1_1 exon 12146831 12146877 12146831 ID=Msa0008460-mRNA-1:exon:4597;Parent=Msa0008460-mRNA-1
chr1_1 exon 12146988 12147116 12146988 ID=Msa0008460-mRNA-1:exon:4598;Parent=Msa0008460-mRNA-1
chr1_1 exon 12148455 12148815 12148455 ID=Msa0008460-mRNA-1:exon:4599;Parent=Msa0008460-mRNA-1
chr1_1 five_prime_UTR 12144826 12144839 12144826 ID=Msa0008460-mRNA-1:five_prime_utr;Parent=Msa0008460-mRNA-1
chr1_1 CDS 12144840 12144937 12144840 ID=Msa0008460-mRNA-1:cds;Parent=Msa0008460-mRNA-1
chr1_1 CDS 12145881 12145935 12145881 ID=Msa0008460-mRNA-1:cds;Parent=Msa0008460-mRNA-1
chr1_1 CDS 12146074 12146131 12146074 ID=Msa0008460-mRNA-1:cds;Parent=Msa0008460-mRNA-1
chr1_1 CDS 12146570 12146664 12146570 ID=Msa0008460-mRNA-1:cds;Parent=Msa0008460-mRNA-1
chr1_1 CDS 12146831 12146877 12146831 ID=Msa0008460-mRNA-1:cds;Parent=Msa0008460-mRNA-1
chr1_1 CDS 12146988 12147116 12146988 ID=Msa0008460-mRNA-1:cds;Parent=Msa0008460-mRNA-1
chr1_1 CDS 12148455 12148815 12148455 ID=Msa0008460-mRNA-1:cds;Parent=Msa0008460-mRNA-1
Gene Sequence

>Msa0008460

ATGGAACATGACAAAGATTTGAATCGGGCATCAAGTTCTTCAGAACAAGAAAGCAATTCCGTTCTTGGAACTCAAAGACCTGCCTCTATTCAACAACGAAGGGTGACTGGTCCTACAAGAAGATCAACTAAAGGAGGCTGGACAGAGAAGGAGGATAAACTTTTGATTGCTGCTGTGAAAAAGTATAATGGAAAAAGTTGGAAAAAGATAGCTGCTTGTGTTACTGGCAGAACAGATGTTCAATGTCTGCATCGCTGGCAAAAGGTTCTGAATCCTGATCTTATCAAAGGACCTTGGTCAGAACAGGTAGCAAAGTCCTTACCAGGTCGCATAGGTAAACAATGTAGAGAAAGGTGGTATAACCATTTAAATCCAGATATAAAGAAAACTCCATGGACCAAAGAAGAGGAGTCGACTCTAATCAAGACTCACAAAATATATGGGAATAGTTGGGCTGAAATAGCCAAATTTCTGCATGGAAGGAGTGAAAACTCTATCAAGAACCATTGGAATTGCTCTTTGAAGAAAAAGGTTGATTTAAATACCTCAGTGGACACCTCCAGAACTGACTATGATACAGCTACCCCAGTTGAAACAAGCATTGATACAAATGTGGAAACTCCTCAAAGCATAGACAATGCAAGTCATGACTTTTTGGCAACACCCAAGAACACTAACATCCATGCACAAAATACTTCAATTTTTAATTCCCTTTGTAATAACCCATCAAATTCTACAGAAGAAACACTTGATACTAGTAGTCCTAGCCTAAGAGATATATTAAGTGCTTTAAAGACTTCTGCTAGGAAATGTAAATACATTCCATCTATCCTAAGACGCAAT
Protein sequence

>Msa0008460

MEHDKDLNRASSSSEQESNSVLGTQRPASIQQRRVTGPTRRSTKGGWTEKEDKLLIAAVKKYNGKSWKKIAACVTGRTDVQCLHRWQKVLNPDLIKGPWSEQVAKSLPGRIGKQCRERWYNHLNPDIKKTPWTKEEESTLIKTHKIYGNSWAEIAKFLHGRSENSIKNHWNCSLKKKVDLNTSVDTSRTDYDTATPVETSIDTNVETPQSIDNASHDFLATPKNTNIHAQNTSIFNSLCNNPSNSTEETLDTSSPSLRDILSALKTSARKCKYIPSILRRN