Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0009020 | sp|P69781|GAT12_ARATH | 55.849 | 265 | 100 | 7 | 102 | 349 | 67 | 331 | 9.38e-89 | 273 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0009020 | TF | C2C2-GATA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0009020 | MtrunA17_Chr1g0146231 | 90.265 | 339 | 31 | 2 | 13 | 349 | 6 | 344 | 0.0 | 607 |
| Msa0009020 | MtrunA17_Chr1g0146231 | 94.118 | 34 | 1 | 1 | 3 | 35 | 104 | 137 | 3.01e-11 | 63.9 |
| Msa0009020 | MtrunA17_Chr3g0140331 | 55.247 | 324 | 104 | 8 | 34 | 349 | 74 | 364 | 1.01e-101 | 304 |
| Msa0009020 | MtrunA17_Chr8g0340401 | 46.567 | 335 | 131 | 12 | 34 | 349 | 37 | 342 | 3.53e-75 | 235 |
| Msa0009020 | MtrunA17_Chr8g0372291 | 46.341 | 205 | 92 | 5 | 105 | 309 | 102 | 288 | 3.32e-45 | 156 |
| Msa0009020 | MtrunA17_Chr4g0035891 | 42.180 | 211 | 85 | 6 | 98 | 308 | 107 | 280 | 9.64e-44 | 152 |
| Msa0009020 | MtrunA17_Chr6g0461591 | 39.565 | 230 | 104 | 7 | 110 | 305 | 30 | 258 | 2.15e-40 | 142 |
| Msa0009020 | MtrunA17_Chr5g0404981 | 44.000 | 225 | 104 | 5 | 103 | 309 | 150 | 370 | 3.17e-40 | 145 |
| Msa0009020 | MtrunA17_Chr3g0145121 | 38.605 | 215 | 114 | 3 | 96 | 309 | 88 | 285 | 1.27e-39 | 142 |
| Msa0009020 | MtrunA17_Chr1g0199671 | 34.824 | 313 | 144 | 11 | 36 | 303 | 9 | 306 | 1.39e-36 | 134 |
| Msa0009020 | MtrunA17_Chr1g0169431 | 78.873 | 71 | 15 | 0 | 238 | 308 | 171 | 241 | 1.18e-34 | 127 |
| Msa0009020 | MtrunA17_Chr7g0253101 | 39.450 | 218 | 92 | 8 | 116 | 303 | 45 | 252 | 6.08e-33 | 123 |
| Msa0009020 | MtrunA17_Chr5g0395391 | 74.648 | 71 | 18 | 0 | 238 | 308 | 269 | 339 | 7.06e-33 | 125 |
| Msa0009020 | MtrunA17_Chr5g0395391 | 72.222 | 72 | 20 | 0 | 238 | 309 | 167 | 238 | 1.60e-29 | 115 |
| Msa0009020 | MtrunA17_Chr1g0213161 | 55.963 | 109 | 43 | 2 | 218 | 325 | 130 | 234 | 5.04e-32 | 120 |
| Msa0009020 | MtrunA17_Chr2g0326771 | 76.923 | 65 | 15 | 0 | 239 | 303 | 216 | 280 | 1.65e-31 | 120 |
| Msa0009020 | MtrunA17_Chr4g0028961 | 73.134 | 67 | 18 | 0 | 239 | 305 | 232 | 298 | 8.94e-31 | 119 |
| Msa0009020 | MtrunA17_Chr7g0232671 | 62.903 | 62 | 23 | 0 | 239 | 300 | 187 | 248 | 3.29e-21 | 91.3 |
| Msa0009020 | MtrunA17_Chr7g0232701 | 58.065 | 62 | 26 | 0 | 239 | 300 | 73 | 134 | 3.56e-19 | 82.8 |
| Msa0009020 | MtrunA17_Chr7g0232681 | 48.193 | 83 | 42 | 1 | 218 | 300 | 112 | 193 | 9.07e-19 | 83.2 |
| Msa0009020 | MtrunA17_Chr7g0271861 | 70.588 | 34 | 10 | 0 | 241 | 274 | 24 | 57 | 1.81e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0009020 | AT5G25830.1 | 55.849 | 265 | 100 | 7 | 102 | 349 | 67 | 331 | 9.54e-90 | 273 |
| Msa0009020 | AT4G32890.1 | 43.505 | 331 | 130 | 9 | 34 | 349 | 20 | 308 | 7.61e-76 | 236 |
| Msa0009020 | AT3G60530.1 | 48.309 | 207 | 63 | 6 | 102 | 307 | 63 | 226 | 4.43e-50 | 167 |
| Msa0009020 | AT2G45050.1 | 43.277 | 238 | 79 | 7 | 98 | 319 | 60 | 257 | 2.25e-49 | 166 |
| Msa0009020 | AT5G66320.2 | 39.259 | 270 | 114 | 8 | 78 | 321 | 86 | 331 | 3.00e-41 | 147 |
| Msa0009020 | AT5G66320.1 | 39.259 | 270 | 114 | 8 | 78 | 321 | 86 | 331 | 3.00e-41 | 147 |
| Msa0009020 | AT4G34680.1 | 39.171 | 217 | 81 | 5 | 99 | 308 | 77 | 249 | 1.32e-36 | 133 |
| Msa0009020 | AT4G34680.2 | 39.171 | 217 | 81 | 5 | 99 | 308 | 77 | 249 | 1.32e-36 | 133 |
| Msa0009020 | AT4G36240.1 | 41.589 | 214 | 72 | 7 | 102 | 306 | 62 | 231 | 9.72e-36 | 130 |
| Msa0009020 | AT3G24050.1 | 74.286 | 70 | 18 | 0 | 238 | 307 | 193 | 262 | 3.94e-33 | 124 |
| Msa0009020 | AT1G08010.2 | 65.476 | 84 | 23 | 1 | 234 | 311 | 215 | 298 | 4.27e-33 | 125 |
| Msa0009020 | AT1G08010.1 | 65.476 | 84 | 23 | 1 | 234 | 311 | 215 | 298 | 4.27e-33 | 125 |
| Msa0009020 | AT1G08010.3 | 65.476 | 84 | 23 | 1 | 234 | 311 | 215 | 298 | 4.27e-33 | 125 |
| Msa0009020 | AT1G08000.2 | 70.833 | 72 | 21 | 0 | 234 | 305 | 213 | 284 | 4.37e-31 | 119 |
| Msa0009020 | AT1G08000.1 | 70.833 | 72 | 21 | 0 | 234 | 305 | 213 | 284 | 4.37e-31 | 119 |
| Msa0009020 | AT3G54810.1 | 62.963 | 81 | 30 | 0 | 239 | 319 | 229 | 309 | 8.00e-31 | 119 |
| Msa0009020 | AT3G54810.2 | 62.963 | 81 | 30 | 0 | 239 | 319 | 229 | 309 | 8.00e-31 | 119 |
| Msa0009020 | AT3G51080.1 | 40.444 | 225 | 108 | 8 | 98 | 307 | 76 | 289 | 1.10e-30 | 119 |
| Msa0009020 | AT3G45170.1 | 43.846 | 130 | 62 | 2 | 187 | 307 | 56 | 183 | 9.15e-27 | 105 |
| Msa0009020 | AT2G28340.1 | 69.841 | 63 | 19 | 0 | 241 | 303 | 193 | 255 | 1.28e-26 | 107 |
Find 117 sgRNAs with CRISPR-Local
Find 657 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCGTCACTGTCCTTTCTTCT+TGG | 0.090798 | 1_1:-13138469 | None:intergenic |
| AAACGATTCCTCAACAATAT+TGG | 0.259048 | 1_1:-13130458 | None:intergenic |
| TCAAAAGATGCAACTGATAT+CGG | 0.281999 | 1_1:+13130495 | Msa0009020:CDS |
| TCAAAAGATGCAACTGATAT+CGG | 0.281999 | 1_1:+13138192 | Msa0009020:CDS |
| CCAATATCAGGAACGACATT+AGG | 0.287162 | 1_1:-13137575 | None:intergenic |
| TATATTCAACAAGGAAGTTT+TGG | 0.289032 | 1_1:+13138279 | Msa0009020:CDS |
| GCAGTCTTTGCCTGCTTCCT+TGG | 0.291400 | 1_1:-13138445 | None:intergenic |
| TACTCTGATGTTGTAAAATC+TGG | 0.292416 | 1_1:-13138747 | None:intergenic |
| GCTAGCTGCAGGCCTGTATT+CGG | 0.316365 | 1_1:-13138626 | None:intergenic |
| AAAACTTCCTTGTTGAATAT+AGG | 0.323222 | 1_1:-13138277 | None:intergenic |
| CTCCGGAGACCTGTGTGTTC+CGG | 0.345236 | 1_1:+13137625 | Msa0009020:CDS |
| CTAGCTGCAGGCCTGTATTC+GGG | 0.355199 | 1_1:-13138625 | None:intergenic |
| CCTAATGTCGTTCCTGATAT+TGG | 0.361673 | 1_1:+13137575 | Msa0009020:CDS |
| CAACGTCATTGTTGAGGTTA+AGG | 0.374037 | 1_1:-13137430 | None:intergenic |
| AGGATTGTTTCGGTTGGGTT+GGG | 0.378223 | 1_1:-13138257 | None:intergenic |
| TGTTGAATATAGGATTGTTT+CGG | 0.384257 | 1_1:-13138267 | None:intergenic |
| AAGACACCACAGTGGCGAAC+CGG | 0.386348 | 1_1:+13138538 | Msa0009020:CDS |
| AAATTCTGACAGCCAATATC+AGG | 0.389939 | 1_1:-13137587 | None:intergenic |
| TTACTTGATTCACCAACATA+TGG | 0.405233 | 1_1:+13138798 | Msa0009020:CDS |
| GTTGGGTTGGGAAAGCTCAC+GGG | 0.412320 | 1_1:-13138245 | None:intergenic |
| TAGGATTGTTTCGGTTGGGT+TGG | 0.415796 | 1_1:-13138258 | None:intergenic |
| CACACAGGTCTCCGGAGAAA+TGG | 0.416213 | 1_1:-13137619 | None:intergenic |
| AATATAGGATTGTTTCGGTT+GGG | 0.434907 | 1_1:-13138262 | None:intergenic |
| GTCGATTGGTGCCCGAATAC+AGG | 0.435560 | 1_1:+13138614 | Msa0009020:CDS |
| CAATATCAGGAACGACATTA+GGG | 0.440367 | 1_1:-13137574 | None:intergenic |
| CTCTTGCTACGGGCCTTAGC+TGG | 0.442400 | 1_1:-13138304 | None:intergenic |
| CAGTGGCGAACCGGGCCTAA+TGG | 0.443660 | 1_1:+13138547 | Msa0009020:CDS |
| TGTTTAGTCAACACAAATGT+AGG | 0.444393 | 1_1:-13138649 | None:intergenic |
| CACGGTAACGGTGGAGGAAG+AGG | 0.447762 | 1_1:-13137513 | None:intergenic |
| GGTTGGGTTGGGAAAGCTCA+CGG | 0.448750 | 1_1:-13138246 | None:intergenic |
| TACATCATCTGCCTAAAATC+AGG | 0.450652 | 1_1:-13138823 | None:intergenic |
| GCTCACGGGGTTCTTCGTCC+TGG | 0.451765 | 1_1:-13138231 | None:intergenic |
| AAGGACAGTGACGGAGGGTC+AGG | 0.466229 | 1_1:+13138478 | Msa0009020:CDS |
| AAGGCAGAAGGAAATGTTGC+GGG | 0.466463 | 1_1:+13138705 | Msa0009020:CDS |
| TACTTGATTCACCAACATAT+GGG | 0.466490 | 1_1:+13138799 | Msa0009020:CDS |
| GAATATAGGATTGTTTCGGT+TGG | 0.469952 | 1_1:-13138263 | None:intergenic |
| CAATATTGGAAAGCCATTCC+AGG | 0.471890 | 1_1:-13130444 | None:intergenic |
| GCCCACGAGTCCTCTTGCTA+CGG | 0.473059 | 1_1:-13138315 | None:intergenic |
| CAACATGGGAAATCCATTCC+AGG | 0.477735 | 1_1:-13138141 | None:intergenic |
| GTTAGCTCGTCATCATTGTC+CGG | 0.486841 | 1_1:+13137545 | Msa0009020:CDS |
| ATGATTTAGCATACCTGGAA+TGG | 0.491377 | 1_1:+13138128 | Msa0009020:CDS |
| GGAGGATGATGTAGCGGACC+TGG | 0.493972 | 1_1:+13130426 | Msa0009020:intron |
| CAAAAGATGCAACTGATATC+GGG | 0.494290 | 1_1:+13130496 | Msa0009020:CDS |
| CAAAAGATGCAACTGATATC+GGG | 0.494290 | 1_1:+13138193 | Msa0009020:CDS |
| GACGTGAGCTCCAGTCGCAA+GGG | 0.498267 | 1_1:-13138339 | None:intergenic |
| AATCAAGTAATCATCATTGT+TGG | 0.499207 | 1_1:-13138785 | None:intergenic |
| AAGGTTGGTGTCGGAAATGA+TGG | 0.507635 | 1_1:-13137465 | None:intergenic |
| AAGATATAAGTCGGGTCGAT+TGG | 0.513159 | 1_1:+13138600 | Msa0009020:CDS |
| AGACACCACAGTGGCGAACC+GGG | 0.516495 | 1_1:+13138539 | Msa0009020:CDS |
| GGAGGATGATTTAGCATACC+TGG | 0.517191 | 1_1:+13138123 | Msa0009020:intron |
| TACCGGAACACACAGGTCTC+CGG | 0.525459 | 1_1:-13137627 | None:intergenic |
| ATTGACCACGGTAACGGTGG+AGG | 0.527850 | 1_1:-13137519 | None:intergenic |
| GCCCGTAGCAAGAGGACTCG+TGG | 0.533598 | 1_1:+13138313 | Msa0009020:CDS |
| TTCCGACACCAACCTTGACT+CGG | 0.534554 | 1_1:+13137472 | Msa0009020:CDS |
| ATGATGTAGCGGACCTGGAA+TGG | 0.537464 | 1_1:+13130431 | Msa0009020:CDS |
| CCCACGAGTCCTCTTGCTAC+GGG | 0.537511 | 1_1:-13138314 | None:intergenic |
| GACGGAGGGTCAGGTGGAGA+TGG | 0.539597 | 1_1:+13138487 | Msa0009020:CDS |
| GGGCATGAAGGTGCGAAACC+AGG | 0.541438 | 1_1:+13138213 | Msa0009020:CDS |
| TGGAACAGTGACGGTAGGTA+AGG | 0.543018 | 1_1:-13138425 | None:intergenic |
| AACAGTGACGGTAGGTAAGG+TGG | 0.543787 | 1_1:-13138422 | None:intergenic |
| GAGGGTCAGGTGGAGATGGT+CGG | 0.544742 | 1_1:+13138491 | Msa0009020:CDS |
| CGTCACTGTTCCAAGGAAGC+AGG | 0.545318 | 1_1:+13138435 | Msa0009020:CDS |
| CAACACTTTACGATGCGAGT+TGG | 0.550252 | 1_1:-13138674 | None:intergenic |
| AGTTGACCGTGGCCGAGTCA+AGG | 0.552809 | 1_1:-13137484 | None:intergenic |
| AAAGACTGCTCCAAGAAGAA+AGG | 0.555772 | 1_1:+13138459 | Msa0009020:CDS |
| AACGCTATTGACCACGGTAA+CGG | 0.557909 | 1_1:-13137525 | None:intergenic |
| GACAGTGACGGAGGGTCAGG+TGG | 0.558691 | 1_1:+13138481 | Msa0009020:CDS |
| AGACGTGAGCTCCAGTCGCA+AGG | 0.560751 | 1_1:-13138340 | None:intergenic |
| ACAGTGACGGTAGGTAAGGT+GGG | 0.561238 | 1_1:-13138421 | None:intergenic |
| ATGGCTTTCCAATATTGTTG+AGG | 0.561811 | 1_1:+13130450 | Msa0009020:CDS |
| TTGTGGTGTAAGATATAAGT+CGG | 0.562133 | 1_1:+13138591 | Msa0009020:CDS |
| GCAACTGATATCGGGCATGA+AGG | 0.569194 | 1_1:+13130504 | Msa0009020:CDS |
| GCAACTGATATCGGGCATGA+AGG | 0.569194 | 1_1:+13138201 | Msa0009020:CDS |
| GGCCGAGTCAAGGTTGGTGT+CGG | 0.570739 | 1_1:-13137474 | None:intergenic |
| TAAAATCAGGTCCCATATGT+TGG | 0.573858 | 1_1:-13138810 | None:intergenic |
| CCCGTAGCAAGAGGACTCGT+GGG | 0.574146 | 1_1:+13138314 | Msa0009020:CDS |
| TTGGGTTGGGAAAGCTCACG+GGG | 0.578980 | 1_1:-13138244 | None:intergenic |
| AAAACGATTCCTCACCAACA+TGG | 0.579455 | 1_1:-13138156 | None:intergenic |
| CAGCTAAGGCCCGTAGCAAG+AGG | 0.579929 | 1_1:+13138305 | Msa0009020:CDS |
| CGTCGTCAACGTCATTGTTG+AGG | 0.580282 | 1_1:-13137436 | None:intergenic |
| ACAAATGTAGGGCTAGCTGC+AGG | 0.584123 | 1_1:-13138637 | None:intergenic |
| GACCGTGGCCGAGTCAAGGT+TGG | 0.584878 | 1_1:-13137480 | None:intergenic |
| TTAGCTCGTCATCATTGTCC+GGG | 0.587117 | 1_1:+13137546 | Msa0009020:CDS |
| CTGCTTCCTTGGAACAGTGA+CGG | 0.590093 | 1_1:-13138434 | None:intergenic |
| GGTCAGGTGGAGATGGTCGG+AGG | 0.590443 | 1_1:+13138494 | Msa0009020:CDS |
| TACCTACCGTCACTGTTCCA+AGG | 0.593877 | 1_1:+13138428 | Msa0009020:CDS |
| CACCAACCTTGACTCGGCCA+CGG | 0.595493 | 1_1:+13137478 | Msa0009020:CDS |
| CGTCATTGTTGAGGTTAAGG+AGG | 0.598517 | 1_1:-13137427 | None:intergenic |
| GTTTAGTCAACACAAATGTA+GGG | 0.599375 | 1_1:-13138648 | None:intergenic |
| AACGACATTAGGGTCGCACC+CGG | 0.603894 | 1_1:-13137564 | None:intergenic |
| CTCTTCCTCCACCGTTACCG+TGG | 0.604146 | 1_1:+13137514 | Msa0009020:CDS |
| CAACTCGCATCGTAAAGTGT+TGG | 0.604228 | 1_1:+13138675 | Msa0009020:CDS |
| TGTGGTGTAAGATATAAGTC+GGG | 0.607927 | 1_1:+13138592 | Msa0009020:CDS |
| GTTGGAGCTACGAAGGCAGA+AGG | 0.613955 | 1_1:+13138693 | Msa0009020:CDS |
| CTGGAATGGATTTCCCATGT+TGG | 0.615927 | 1_1:+13138142 | Msa0009020:CDS |
| AAACGATTCCTCACCAACAT+GGG | 0.617274 | 1_1:-13138155 | None:intergenic |
| ACGTGAGCTCCAGTCGCAAG+GGG | 0.619626 | 1_1:-13138338 | None:intergenic |
| GCTATTGACCACGGTAACGG+TGG | 0.631846 | 1_1:-13137522 | None:intergenic |
| GTAAAGTGTTGGAGCTACGA+AGG | 0.637088 | 1_1:+13138686 | Msa0009020:CDS |
| GAAGAAAGGACAGTGACGGA+GGG | 0.637953 | 1_1:+13138473 | Msa0009020:CDS |
| CCAAGAAGAAAGGACAGTGA+CGG | 0.640630 | 1_1:+13138469 | Msa0009020:CDS |
| ATGGATTTCCCATGTTGGTG+AGG | 0.643221 | 1_1:+13138147 | Msa0009020:CDS |
| AGAAGAAAGGACAGTGACGG+AGG | 0.643844 | 1_1:+13138472 | Msa0009020:CDS |
| GAAATAGGAGGATGATGTAG+CGG | 0.646330 | 1_1:+13130420 | Msa0009020:intron |
| CAGTGACGGTAGGTAAGGTG+GGG | 0.651207 | 1_1:-13138420 | None:intergenic |
| GAAGGCAGAAGGAAATGTTG+CGG | 0.675658 | 1_1:+13138704 | Msa0009020:CDS |
| AGTTCTGACTCAGAAGAAGA+CGG | 0.679246 | 1_1:-13138385 | None:intergenic |
| TTCCTTGGAACAGTGACGGT+AGG | 0.684302 | 1_1:-13138430 | None:intergenic |
| AGTGACGGTAGGTAAGGTGG+GGG | 0.685489 | 1_1:-13138419 | None:intergenic |
| TATAATATACCGGAACACAC+AGG | 0.691414 | 1_1:-13137634 | None:intergenic |
| AAAACATTATGCAATGCTTG+TGG | 0.695200 | 1_1:+13138574 | Msa0009020:CDS |
| TTAGGCCCGGTTCGCCACTG+TGG | 0.696512 | 1_1:-13138544 | None:intergenic |
| AAACAATCCTATATTCAACA+AGG | 0.707348 | 1_1:+13138270 | Msa0009020:CDS |
| CGAGCTAACGCTATTGACCA+CGG | 0.719172 | 1_1:-13137531 | None:intergenic |
| CGTGAGCTCCAGTCGCAAGG+GGG | 0.723454 | 1_1:-13138337 | None:intergenic |
| AGAGGCAGTTGAGTTGACCG+TGG | 0.724908 | 1_1:-13137495 | None:intergenic |
| TGACAGACAAGACACCACAG+TGG | 0.810762 | 1_1:+13138530 | Msa0009020:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTTATTTTTTAATTAT+GGG | - | chr1_1:13135152-13135171 | None:intergenic | 0.0% |
| !!! | TTTTATTTATTTTTTAATTA+TGG | - | chr1_1:13135153-13135172 | None:intergenic | 0.0% |
| !! | ATATTTAAATATTAAAAAAA+GGG | - | chr1_1:13137017-13137036 | None:intergenic | 0.0% |
| !! | TATATTTAAATATTAAAAAA+AGG | - | chr1_1:13137018-13137037 | None:intergenic | 0.0% |
| !! | AAAAAAAATAATATTTGAAC+GGG | - | chr1_1:13131545-13131564 | None:intergenic | 10.0% |
| !!! | TATAATTTTTAACTTATTGT+GGG | - | chr1_1:13132153-13132172 | None:intergenic | 10.0% |
| !!! | ATATAATTTTTAACTTATTG+TGG | - | chr1_1:13132154-13132173 | None:intergenic | 10.0% |
| !! | TATTATAATCATATATACAA+TGG | + | chr1_1:13132700-13132719 | Msa0009020:intron | 10.0% |
| !!! | TAAAAACATTTTATTAAGTA+GGG | - | chr1_1:13133612-13133631 | None:intergenic | 10.0% |
| !!! | TTAAAAACATTTTATTAAGT+AGG | - | chr1_1:13133613-13133632 | None:intergenic | 10.0% |
| !!! | TTAATAAAATGTTTTTAAGT+CGG | + | chr1_1:13133615-13133634 | Msa0009020:intron | 10.0% |
| !!! | TATTTTTCAATAATGATATA+TGG | + | chr1_1:13134805-13134824 | Msa0009020:intron | 10.0% |
| !! | ATCAATATTACAATAAATTA+AGG | + | chr1_1:13136048-13136067 | Msa0009020:intron | 10.0% |
| !! | ATCAATATTACAATAAATTA+AGG | + | chr1_1:13136048-13136067 | Msa0009020:intron | 10.0% |
| !! | ATATCATTATTAATTATTTC+AGG | - | chr1_1:13136355-13136374 | None:intergenic | 10.0% |
| !! | TCTTTGTTAAATTAATTAGA+AGG | + | chr1_1:13131050-13131069 | Msa0009020:intron | 15.0% |
| !! | AAAAAAATAATATTTGAACG+GGG | - | chr1_1:13131544-13131563 | None:intergenic | 15.0% |
| !!! | GTGGTTTAATTTAAATTAAA+TGG | - | chr1_1:13131612-13131631 | None:intergenic | 15.0% |
| !!! | AATATGTTTTTATTTTCTTC+AGG | + | chr1_1:13132401-13132420 | Msa0009020:intron | 15.0% |
| !!! | TTTTTTTATCCTTTTTTAGT+AGG | + | chr1_1:13132788-13132807 | Msa0009020:intron | 15.0% |
| !!! | ATTTAGGTTAATTAAGTTTT+TGG | + | chr1_1:13132896-13132915 | Msa0009020:intron | 15.0% |
| !!! | AAAGTGTGATTTATTTTTAT+AGG | - | chr1_1:13132955-13132974 | None:intergenic | 15.0% |
| !!! | CCTTAACATAAAATTTTAAA+GGG | - | chr1_1:13133485-13133504 | None:intergenic | 15.0% |
| !!! | ACCTTAACATAAAATTTTAA+AGG | - | chr1_1:13133484-13133503 | None:intergenic | 15.0% |
| !!! | ACCTTAACATAAAATTTTAA+AGG | + | chr1_1:13133484-13133503 | Msa0009020:intron | 15.0% |
| !!! | CCTTAACATAAAATTTTAAA+GGG | + | chr1_1:13133485-13133504 | Msa0009020:intron | 15.0% |
| !!! | ATTTGAAAGTTTATTTCTAT+TGG | + | chr1_1:13134252-13134271 | Msa0009020:intron | 15.0% |
| !!! | CTAACATGATAATTATTTTT+AGG | + | chr1_1:13134685-13134704 | Msa0009020:intron | 15.0% |
| !!! | TTATTTTTTAATTATGGGTT+AGG | - | chr1_1:13135147-13135166 | None:intergenic | 15.0% |
| !! | TTTATAGTAAAAAGAAAATC+CGG | + | chr1_1:13136077-13136096 | Msa0009020:intron | 15.0% |
| !! | TTTATAGTAAAAAGAAAATC+CGG | + | chr1_1:13136077-13136096 | Msa0009020:intron | 15.0% |
| !! | TTTGTCAAAAAAAAAAAATC+CGG | + | chr1_1:13136184-13136203 | Msa0009020:intron | 15.0% |
| !!! | TTTAATTCATTTTTAACAGA+TGG | + | chr1_1:13136378-13136397 | Msa0009020:intron | 15.0% |
| !!! | CATTTGAAAGTTATTTTTAA+AGG | - | chr1_1:13136577-13136596 | None:intergenic | 15.0% |
| !!! | GTTTTTTTTTATTATGTGTT+GGG | - | chr1_1:13137290-13137309 | None:intergenic | 15.0% |
| !!! | TGTTTTTTTTTATTATGTGT+TGG | - | chr1_1:13137291-13137310 | None:intergenic | 15.0% |
| !!! | TTTTTTTCTCCTGAAATTAT+TGG | - | chr1_1:13130147-13130166 | None:intergenic | 20.0% |
| !!! | TTTTGTGATACTCAATAATT+TGG | - | chr1_1:13130257-13130276 | None:intergenic | 20.0% |
| !!! | TTTGTGTTGAAATTTGAAAT+AGG | + | chr1_1:13130405-13130424 | Msa0009020:intron | 20.0% |
| !! | TCAACTTCATTGTTAAATAT+AGG | - | chr1_1:13130583-13130602 | None:intergenic | 20.0% |
| !! | CATAGTGAAATGAAAAATTT+GGG | - | chr1_1:13131121-13131140 | None:intergenic | 20.0% |
| !! | ACATAGTGAAATGAAAAATT+TGG | - | chr1_1:13131122-13131141 | None:intergenic | 20.0% |
| !! | AAATAGTTTAAACTACAAAG+AGG | - | chr1_1:13131393-13131412 | None:intergenic | 20.0% |
| !! | TGAATTATATGAATGAGATT+TGG | + | chr1_1:13131446-13131465 | Msa0009020:intron | 20.0% |
| !! | TCTTGTAAAAAAATCAAGTT+AGG | - | chr1_1:13132034-13132053 | None:intergenic | 20.0% |
| !!! | TTTTATTTTCTTCAGGTTTT+TGG | + | chr1_1:13132408-13132427 | Msa0009020:intron | 20.0% |
| !!! | CTGATGATATTTTATATTAG+TGG | + | chr1_1:13132640-13132659 | Msa0009020:intron | 20.0% |
| !! | ACTTAATAACCTACTAAAAA+AGG | - | chr1_1:13132800-13132819 | None:intergenic | 20.0% |
| !!! | TTTTTTAGTAGGTTATTAAG+TGG | + | chr1_1:13132799-13132818 | Msa0009020:intron | 20.0% |
| !!! | TTTTTAGTAGGTTATTAAGT+GGG | + | chr1_1:13132800-13132819 | Msa0009020:intron | 20.0% |
| !!! | ATTTTTTGATCCTTTTTAAG+TGG | + | chr1_1:13132851-13132870 | Msa0009020:intron | 20.0% |
| !!! | TTTTTTGATCCTTTTTAAGT+GGG | + | chr1_1:13132852-13132871 | Msa0009020:intron | 20.0% |
| !! | CTAAATATGTTTATTAAGTC+GGG | - | chr1_1:13132882-13132901 | None:intergenic | 20.0% |
| !! | CCTAAATATGTTTATTAAGT+CGG | - | chr1_1:13132883-13132902 | None:intergenic | 20.0% |
| !! | CAAAACTAAAGATATTTGTA+GGG | - | chr1_1:13132923-13132942 | None:intergenic | 20.0% |
| !! | ACAAAACTAAAGATATTTGT+AGG | - | chr1_1:13132924-13132943 | None:intergenic | 20.0% |
| !!! | CCCTTTAAAATTTTATGTTA+AGG | + | chr1_1:13132980-13132999 | Msa0009020:intron | 20.0% |
| !!! | CCCTTTAAAATTTTATGTTA+AGG | - | chr1_1:13132980-13132999 | None:intergenic | 20.0% |
| !!! | AAAGTGTGATTTATTTTTGT+AGG | + | chr1_1:13133513-13133532 | Msa0009020:intron | 20.0% |
| !!! | TGTTGGATTAATTAAGTTTT+TGG | - | chr1_1:13133572-13133591 | None:intergenic | 20.0% |
| !!! | TTAATCCAACATATTTTAAG+TGG | + | chr1_1:13133581-13133600 | Msa0009020:intron | 20.0% |
| !!! | TAATCCAACATATTTTAAGT+GGG | + | chr1_1:13133582-13133601 | Msa0009020:intron | 20.0% |
| !! | AATCCAAATAGTTACTAAAT+CGG | + | chr1_1:13133656-13133675 | Msa0009020:intron | 20.0% |
| !!! | TCAAGACTTTTTTTTTTTGA+AGG | + | chr1_1:13134747-13134766 | Msa0009020:intron | 20.0% |
| !! | AGTTAAAATCCAAATATAGA+GGG | - | chr1_1:13134913-13134932 | None:intergenic | 20.0% |
| !! | TAGTTAAAATCCAAATATAG+AGG | - | chr1_1:13134914-13134933 | None:intergenic | 20.0% |
| !!! | TTATAATCTTTTGTTTCCAT+AGG | - | chr1_1:13135053-13135072 | None:intergenic | 20.0% |
| !! | TGCAAAAGAAAAAAAAAAGA+AGG | - | chr1_1:13135372-13135391 | None:intergenic | 20.0% |
| !! | TTTAAAGAAATTGTCAATTC+CGG | - | chr1_1:13136099-13136118 | None:intergenic | 20.0% |
| !!! | GTACCATTATATACTTTTTT+TGG | + | chr1_1:13136269-13136288 | Msa0009020:intron | 20.0% |
| !!! | GTACCAAAAAAAGTATATAA+TGG | - | chr1_1:13136275-13136294 | None:intergenic | 20.0% |
| !!! | TCATGAATAAATTTTCAATG+AGG | - | chr1_1:13136488-13136507 | None:intergenic | 20.0% |
| !!! | CTTTTTCTTTTGACAAATAT+TGG | - | chr1_1:13136606-13136625 | None:intergenic | 20.0% |
| !! | TTAACTGAAATTCAATTCAA+AGG | - | chr1_1:13136769-13136788 | None:intergenic | 20.0% |
| !! | TCATTTGAAAGCAATAATAT+TGG | + | chr1_1:13136820-13136839 | Msa0009020:intron | 20.0% |
| !! | TGAAGAATTTATACAAGAAA+CGG | + | chr1_1:13136846-13136865 | Msa0009020:intron | 20.0% |
| !! | TAAAATTTATGAAGCAAGAA+GGG | - | chr1_1:13137256-13137275 | None:intergenic | 20.0% |
| !! | CATATACACATATAATATAC+CGG | - | chr1_1:13137647-13137666 | None:intergenic | 20.0% |
| !!! | TTTTGTGATACTCAATAATT+TGG | - | chr1_1:13130257-13130276 | None:intergenic | 20.0% |
| !!! | TTTGTGTTGAAATTTGAAAT+AGG | + | chr1_1:13130405-13130424 | Msa0009020:intron | 20.0% |
| ! | CTGAAATTATTGGCAAAAAA+GGG | - | chr1_1:13130137-13130156 | None:intergenic | 25.0% |
| !!! | CAATGAAGTTGATATTGATA+TGG | + | chr1_1:13130591-13130610 | Msa0009020:intron | 25.0% |
| ! | ATATTGATATGGATGATCAT+CGG | + | chr1_1:13130602-13130621 | Msa0009020:intron | 25.0% |
| ! | GAAATGACTATATATTGTAC+CGG | + | chr1_1:13131863-13131882 | Msa0009020:intron | 25.0% |
| !! | TTATTATTGTAGTGCTATTG+CGG | + | chr1_1:13132073-13132092 | Msa0009020:intron | 25.0% |
| !!! | TTAGCTTACATCTAGTTTTA+TGG | + | chr1_1:13132560-13132579 | Msa0009020:intron | 25.0% |
| !! | ATTTGAATTTGTTTACAGTC+TGG | + | chr1_1:13132604-13132623 | Msa0009020:intron | 25.0% |
| ! | AAAAAAAAATTAAGCAGCAG+TGG | + | chr1_1:13132735-13132754 | Msa0009020:intron | 25.0% |
| ! | AAAAAAAATTAAGCAGCAGT+GGG | + | chr1_1:13132736-13132755 | Msa0009020:intron | 25.0% |
| !!! | TTTTTGATCCTTTTTAAGTG+GGG | + | chr1_1:13132853-13132872 | Msa0009020:intron | 25.0% |
| ! | CCGACTTAATAAACATATTT+AGG | + | chr1_1:13132880-13132899 | Msa0009020:intron | 25.0% |
| !! | ATTCTAGTTGACAATTTACA+GGG | - | chr1_1:13133387-13133406 | None:intergenic | 25.0% |
| !! | AATTCTAGTTGACAATTTAC+AGG | - | chr1_1:13133388-13133407 | None:intergenic | 25.0% |
| !!! | TGTATATTTTTTTGGACATG+TGG | - | chr1_1:13133414-13133433 | None:intergenic | 25.0% |
| ! | TGTCCAAAAAAATATACACA+TGG | + | chr1_1:13133416-13133435 | Msa0009020:intron | 25.0% |
| ! | ACAAAACTAGAGATATTTGT+AGG | + | chr1_1:13133544-13133563 | Msa0009020:intron | 25.0% |
| ! | CAAAACTAGAGATATTTGTA+GGG | + | chr1_1:13133545-13133564 | Msa0009020:intron | 25.0% |
| !!! | AATCCAACATATTTTAAGTG+GGG | + | chr1_1:13133583-13133602 | Msa0009020:intron | 25.0% |
| !!! | CAGAAAACACTTTTTAAGTA+GGG | - | chr1_1:13133727-13133746 | None:intergenic | 25.0% |
| !!! | ACAGAAAACACTTTTTAAGT+AGG | - | chr1_1:13133728-13133747 | None:intergenic | 25.0% |
| ! | GGCATTATTACAAATTATGA+AGG | + | chr1_1:13133790-13133809 | Msa0009020:intron | 25.0% |
| ! | CTCTATGTTAATACTATGTT+TGG | - | chr1_1:13133910-13133929 | None:intergenic | 25.0% |
| !!! | TAGAGAACTGAATTTTTCAA+TGG | + | chr1_1:13133925-13133944 | Msa0009020:intron | 25.0% |
| ! | TGTTAATCACTTGAAGAAAA+TGG | - | chr1_1:13134027-13134046 | None:intergenic | 25.0% |
| ! | GAACTATATTCCTCATTTAT+GGG | + | chr1_1:13134056-13134075 | Msa0009020:intron | 25.0% |
| ! | AGTTAATGGTACTATAAACA+TGG | + | chr1_1:13134467-13134486 | Msa0009020:intron | 25.0% |
| !! | AATGAGGTGTTAAATAGTTA+GGG | - | chr1_1:13134835-13134854 | None:intergenic | 25.0% |
| !! | AAATGAGGTGTTAAATAGTT+AGG | - | chr1_1:13134836-13134855 | None:intergenic | 25.0% |
| ! | CGATAGAAAGAAAATAAATG+AGG | - | chr1_1:13134851-13134870 | None:intergenic | 25.0% |
| ! | GTTAAAATCCAAATATAGAG+GGG | - | chr1_1:13134912-13134931 | None:intergenic | 25.0% |
| ! | ATTACATTGTATCATGATCA+TGG | + | chr1_1:13135080-13135099 | Msa0009020:intron | 25.0% |
| ! | GTAAGTAAAAATGTTTGATG+TGG | - | chr1_1:13135981-13136000 | None:intergenic | 25.0% |
| ! | TTTGACAAAATTGTCAATTC+CGG | - | chr1_1:13136173-13136192 | None:intergenic | 25.0% |
| ! | AAAGTATATAATGGTACATG+TGG | - | chr1_1:13136266-13136285 | None:intergenic | 25.0% |
| ! | ACAATGATTACACTTATTTG+TGG | + | chr1_1:13136293-13136312 | Msa0009020:intron | 25.0% |
| ! | ATATTTCTTAATCATGTTCG+TGG | - | chr1_1:13136517-13136536 | None:intergenic | 25.0% |
| !! | GTCAAAAGAAAAAGTGTAAA+TGG | + | chr1_1:13136612-13136631 | Msa0009020:intron | 25.0% |
| ! | TAATTAGGTTAGGTGTATAA+GGG | - | chr1_1:13136688-13136707 | None:intergenic | 25.0% |
| !!! | TCATTTGTTGTAATTAGGTT+AGG | - | chr1_1:13136698-13136717 | None:intergenic | 25.0% |
| !!! | TGACATCATTTGTTGTAATT+AGG | - | chr1_1:13136703-13136722 | None:intergenic | 25.0% |
| !!! | AGATTTGACTAGTTAGATTT+TGG | + | chr1_1:13136889-13136908 | Msa0009020:intron | 25.0% |
| ! | AACATGTGCAATTTAGAAAA+AGG | + | chr1_1:13137059-13137078 | Msa0009020:intron | 25.0% |
| !!! | AAGTTGTGGTTTTTAGTTAA+AGG | - | chr1_1:13137192-13137211 | None:intergenic | 25.0% |
| ! | CTAAAATTTATGAAGCAAGA+AGG | - | chr1_1:13137257-13137276 | None:intergenic | 25.0% |
| ! | CTGAAATTATTGGCAAAAAA+GGG | - | chr1_1:13130137-13130156 | None:intergenic | 25.0% |
| !!! | GTTTTTTCTCCTGAAATTAT+TGG | - | chr1_1:13137841-13137860 | None:intergenic | 25.0% |
| ! | TGTTGAATATAGGATTGTTT+CGG | - | chr1_1:13138270-13138289 | None:intergenic | 25.0% |
| ! | AAACAATCCTATATTCAACA+AGG | + | chr1_1:13138270-13138289 | Msa0009020:CDS | 25.0% |
| ! | AAAACTTCCTTGTTGAATAT+AGG | - | chr1_1:13138280-13138299 | None:intergenic | 25.0% |
| !! | TATATTCAACAAGGAAGTTT+TGG | + | chr1_1:13138279-13138298 | Msa0009020:CDS | 25.0% |
| ! | AATCAAGTAATCATCATTGT+TGG | - | chr1_1:13138788-13138807 | None:intergenic | 25.0% |
| AAGGGTTCAAAATCTTCAAA+TGG | - | chr1_1:13130119-13130138 | None:intergenic | 30.0% | |
| CCTGAAATTATTGGCAAAAA+AGG | - | chr1_1:13130138-13130157 | None:intergenic | 30.0% | |
| !!! | CCTTTTTTGCCAATAATTTC+AGG | + | chr1_1:13130135-13130154 | Msa0009020:intron | 30.0% |
| GAGAAAAAAAACAACTAGCT+AGG | + | chr1_1:13130157-13130176 | Msa0009020:intron | 30.0% | |
| TAGGCTAAATACAACAGAAT+GGG | + | chr1_1:13130176-13130195 | Msa0009020:intron | 30.0% | |
| ! | TGTTTCAAGAGCATATATAG+AGG | + | chr1_1:13130371-13130390 | Msa0009020:intron | 30.0% |
| ! | GTGTTGAAATTTGAAATAGG+AGG | + | chr1_1:13130408-13130427 | Msa0009020:intron | 30.0% |
| AAACGATTCCTCAACAATAT+TGG | - | chr1_1:13130461-13130480 | None:intergenic | 30.0% | |
| TCAAAAGATGCAACTGATAT+CGG | + | chr1_1:13130495-13130514 | Msa0009020:CDS | 30.0% | |
| TTCAACTTGAAGGAAAGAAA+TGG | + | chr1_1:13130763-13130782 | Msa0009020:intron | 30.0% | |
| TTCTTATACTCCATAACCAT+TGG | - | chr1_1:13130895-13130914 | None:intergenic | 30.0% | |
| ! | CAGATTTTCTTGTAGTGTTT+GGG | - | chr1_1:13130930-13130949 | None:intergenic | 30.0% |
| TTTAGACAGATTGGAGATTT+GGG | - | chr1_1:13131179-13131198 | None:intergenic | 30.0% | |
| AGATGGAGATGAAAAATTTG+GGG | - | chr1_1:13131208-13131227 | None:intergenic | 30.0% | |
| GAGATGGAGATGAAAAATTT+GGG | - | chr1_1:13131209-13131228 | None:intergenic | 30.0% | |
| TGAGATGGAGATGAAAAATT+TGG | - | chr1_1:13131210-13131229 | None:intergenic | 30.0% | |
| TCAACGTTTCAAAATCATTC+CGG | - | chr1_1:13131885-13131904 | None:intergenic | 30.0% | |
| ! | TATTATTGTAGTGCTATTGC+GGG | + | chr1_1:13132074-13132093 | Msa0009020:intron | 30.0% |
| TAGCCACAATCATAATTGAA+CGG | - | chr1_1:13132258-13132277 | None:intergenic | 30.0% | |
| AATTTCATCATCAGTAAACG+AGG | - | chr1_1:13132442-13132461 | None:intergenic | 30.0% | |
| AAGTACATCAAAGTCTTTCA+AGG | - | chr1_1:13132494-13132513 | None:intergenic | 30.0% | |
| ATGTCCAAGAAATATACATG+TGG | - | chr1_1:13133056-13133075 | None:intergenic | 30.0% | |
| ATGTATATTTCTTGGACATG+TGG | + | chr1_1:13133057-13133076 | Msa0009020:intron | 30.0% | |
| !! | ATTCTAGTTGTCAGTTTTAC+AGG | + | chr1_1:13133084-13133103 | Msa0009020:intron | 30.0% |
| ! | TGTTTTGTATCGAAGAATTC+TGG | - | chr1_1:13133162-13133181 | None:intergenic | 30.0% |
| AGGAGAGGGAAAAAAAAATT+AGG | + | chr1_1:13133242-13133261 | Msa0009020:intron | 30.0% | |
| GGAGAGGGAAAAAAAAATTA+GGG | + | chr1_1:13133243-13133262 | Msa0009020:intron | 30.0% | |
| GGAAAAAAAAATTAGGGCTT+AGG | + | chr1_1:13133249-13133268 | Msa0009020:intron | 30.0% | |
| TCTAGAAATTAGCTACTGTT+TGG | + | chr1_1:13133340-13133359 | Msa0009020:intron | 30.0% | |
| !!! | GTGCCATGTGTATATTTTTT+TGG | - | chr1_1:13133422-13133441 | None:intergenic | 30.0% |
| !!! | GTGGAAAAGACTTTTTAAGT+GGG | - | chr1_1:13133705-13133724 | None:intergenic | 30.0% |
| !!! | AAAACACTTTTTAAGTAGGG+TGG | - | chr1_1:13133724-13133743 | None:intergenic | 30.0% |
| TGTAATAATGCCAACATGTA+TGG | - | chr1_1:13133782-13133801 | None:intergenic | 30.0% | |
| TACAAATTATGAAGGCTCTT+TGG | + | chr1_1:13133798-13133817 | Msa0009020:intron | 30.0% | |
| !! | TAAGACTTTTTCCATATCTC+AGG | + | chr1_1:13133876-13133895 | Msa0009020:intron | 30.0% |
| AGAAAATGGAATCACAATTG+AGG | - | chr1_1:13134013-13134032 | None:intergenic | 30.0% | |
| TCTTCAAGTGATTAACAATG+AGG | + | chr1_1:13134030-13134049 | Msa0009020:intron | 30.0% | |
| GGAACTATATTCCTCATTTA+TGG | + | chr1_1:13134055-13134074 | Msa0009020:intron | 30.0% | |
| GCATATGAAAAGCAACATAA+AGG | + | chr1_1:13134147-13134166 | Msa0009020:intron | 30.0% | |
| GTCTTGACAATGTACATAAA+AGG | + | chr1_1:13134224-13134243 | Msa0009020:intron | 30.0% | |
| TTCTATTGGCCAAAATGATA+TGG | + | chr1_1:13134266-13134285 | Msa0009020:intron | 30.0% | |
| ! | CATTGTATGCCATATCATTT+TGG | - | chr1_1:13134278-13134297 | None:intergenic | 30.0% |
| ! | TAATTTTGCGAGTAGTATGT+CGG | + | chr1_1:13134314-13134333 | Msa0009020:intron | 30.0% |
| CAAGGAAATGTTGTAGAATT+AGG | - | chr1_1:13134418-13134437 | None:intergenic | 30.0% | |
| TTATAGTACCATTAACTGCA+AGG | - | chr1_1:13134464-13134483 | None:intergenic | 30.0% | |
| !!! | AAGAATTAGTTTTCCCAACT+TGG | + | chr1_1:13134583-13134602 | Msa0009020:intron | 30.0% |
| ATTATCATGTTAGCCAACAT+CGG | - | chr1_1:13134678-13134697 | None:intergenic | 30.0% | |
| ! | ATGAGGTGTTAAATAGTTAG+GGG | - | chr1_1:13134834-13134853 | None:intergenic | 30.0% |
| ATATGACAGAAAGATAGAGA+TGG | - | chr1_1:13134874-13134893 | None:intergenic | 30.0% | |
| !! | ATCTTTTGTTTCCATAGGAA+AGG | - | chr1_1:13135048-13135067 | None:intergenic | 30.0% |
| !!! | TTTTTAATTATGGGTTAGGC+TGG | - | chr1_1:13135143-13135162 | None:intergenic | 30.0% |
| GCCTGTAATGATTGAAATAT+CGG | + | chr1_1:13135197-13135216 | Msa0009020:intron | 30.0% | |
| ACCGATATTTCAATCATTAC+AGG | - | chr1_1:13135201-13135220 | None:intergenic | 30.0% | |
| ATGTGTTTAGCGAACAAAAT+AGG | + | chr1_1:13135245-13135264 | Msa0009020:intron | 30.0% | |
| TGTGTTTAGCGAACAAAATA+GGG | + | chr1_1:13135246-13135265 | Msa0009020:intron | 30.0% | |
| TCTATTTCAGTCACAAATGT+TGG | + | chr1_1:13135283-13135302 | Msa0009020:intron | 30.0% | |
| AAGCATAAACAAAGTCTAAC+TGG | - | chr1_1:13135334-13135353 | None:intergenic | 30.0% | |
| AAAAAACTAGTCCATTAGGT+GGG | - | chr1_1:13135466-13135485 | None:intergenic | 30.0% | |
| !!! | ACCTAATGGACTAGTTTTTT+GGG | + | chr1_1:13135466-13135485 | Msa0009020:intron | 30.0% |
| TTGAAAGTTTGACCACAAAA+AGG | + | chr1_1:13135538-13135557 | Msa0009020:intron | 30.0% | |
| TGAAAGTTTGACCACAAAAA+GGG | + | chr1_1:13135539-13135558 | Msa0009020:intron | 30.0% | |
| TGAAACCAAAGAAAAGGAAA+GGG | + | chr1_1:13135609-13135628 | Msa0009020:intron | 30.0% | |
| ! | ACATTTTTACTTACTCGATG+TGG | + | chr1_1:13135987-13136006 | Msa0009020:intron | 30.0% |
| ! | CATTTTTACTTACTCGATGT+GGG | + | chr1_1:13135988-13136007 | Msa0009020:intron | 30.0% |
| AAAAAAATCCGGAATTGACA+AGG | + | chr1_1:13136195-13136214 | Msa0009020:intron | 30.0% | |
| ATGTAAAACCTTGTCAATTC+CGG | - | chr1_1:13136206-13136225 | None:intergenic | 30.0% | |
| AATTAGGTTAGGTGTATAAG+GGG | - | chr1_1:13136687-13136706 | None:intergenic | 30.0% | |
| GTAATTAGGTTAGGTGTATA+AGG | - | chr1_1:13136689-13136708 | None:intergenic | 30.0% | |
| ACAACAAATGATGTCATGAT+TGG | + | chr1_1:13136707-13136726 | Msa0009020:intron | 30.0% | |
| TTCAATTCAAAGGCTTCAAA+AGG | - | chr1_1:13136759-13136778 | None:intergenic | 30.0% | |
| ! | AGATTTTGGATGATCATACA+TGG | + | chr1_1:13136903-13136922 | Msa0009020:intron | 30.0% |
| AGTCATATGTGACACTATAA+TGG | - | chr1_1:13136961-13136980 | None:intergenic | 30.0% | |
| TTTATTTACTACCGCTTGAA+GGG | - | chr1_1:13137139-13137158 | None:intergenic | 30.0% | |
| ! | TGAGTAAGTGAGAAAGTATA+GGG | - | chr1_1:13137226-13137245 | None:intergenic | 30.0% |
| ! | ATGAGTAAGTGAGAAAGTAT+AGG | - | chr1_1:13137227-13137246 | None:intergenic | 30.0% |
| ! | GCATGAGTTAGAAATTTTCA+TGG | - | chr1_1:13137766-13137785 | None:intergenic | 30.0% |
| CCTGAAATTATTGGCAAAAA+AGG | - | chr1_1:13130138-13130157 | None:intergenic | 30.0% | |
| !!! | CCTTTTTTGCCAATAATTTC+AGG | + | chr1_1:13130135-13130154 | Msa0009020:intron | 30.0% |
| TAGGCTAAATACAACAGAAT+GGG | + | chr1_1:13130176-13130195 | Msa0009020:intron | 30.0% | |
| ! | TGTTTCAAGAGCATATATAG+AGG | + | chr1_1:13130371-13130390 | Msa0009020:intron | 30.0% |
| ! | GTGTTGAAATTTGAAATAGG+AGG | + | chr1_1:13130408-13130427 | Msa0009020:intron | 30.0% |
| TCAAAAGATGCAACTGATAT+CGG | + | chr1_1:13130495-13130514 | Msa0009020:CDS | 30.0% | |
| AATATAGGATTGTTTCGGTT+GGG | - | chr1_1:13138265-13138284 | None:intergenic | 30.0% | |
| !! | AAGCATTGCATAATGTTTTC+GGG | - | chr1_1:13138573-13138592 | None:intergenic | 30.0% |
| !! | CAAGCATTGCATAATGTTTT+CGG | - | chr1_1:13138574-13138593 | None:intergenic | 30.0% |
| AAAACATTATGCAATGCTTG+TGG | + | chr1_1:13138574-13138593 | Msa0009020:CDS | 30.0% | |
| TTGTGGTGTAAGATATAAGT+CGG | + | chr1_1:13138591-13138610 | Msa0009020:CDS | 30.0% | |
| GTTTAGTCAACACAAATGTA+GGG | - | chr1_1:13138651-13138670 | None:intergenic | 30.0% | |
| TGTTTAGTCAACACAAATGT+AGG | - | chr1_1:13138652-13138671 | None:intergenic | 30.0% | |
| !!! | GTTGTAAAATCTGGTTTTGT+TGG | - | chr1_1:13138741-13138760 | None:intergenic | 30.0% |
| TACTCTGATGTTGTAAAATC+TGG | - | chr1_1:13138750-13138769 | None:intergenic | 30.0% | |
| TTACTTGATTCACCAACATA+TGG | + | chr1_1:13138798-13138817 | Msa0009020:CDS | 30.0% | |
| TACTTGATTCACCAACATAT+GGG | + | chr1_1:13138799-13138818 | Msa0009020:CDS | 30.0% | |
| CTAGGCTAAATACAACAGAA+TGG | + | chr1_1:13130175-13130194 | Msa0009020:intron | 35.0% | |
| AGGCTAAATACAACAGAATG+GGG | + | chr1_1:13130177-13130196 | Msa0009020:intron | 35.0% | |
| ATGGCTTTCCAATATTGTTG+AGG | + | chr1_1:13130450-13130469 | Msa0009020:CDS | 35.0% | |
| CAAAAGATGCAACTGATATC+GGG | + | chr1_1:13130496-13130515 | Msa0009020:CDS | 35.0% | |
| AATATAGGACTGTTTCCGTT+GGG | - | chr1_1:13130568-13130587 | None:intergenic | 35.0% | |
| AAATATAGGACTGTTTCCGT+TGG | - | chr1_1:13130569-13130588 | None:intergenic | 35.0% | |
| ! | TGATAATTTGTGCAGTGACA+AGG | + | chr1_1:13130681-13130700 | Msa0009020:intron | 35.0% |
| ACTTGAAGGAAAGAAATGGA+TGG | + | chr1_1:13130767-13130786 | Msa0009020:intron | 35.0% | |
| GATATTGTGTCCAATGGTTA+TGG | + | chr1_1:13130882-13130901 | Msa0009020:intron | 35.0% | |
| ! | GCAGATTTTCTTGTAGTGTT+TGG | - | chr1_1:13130931-13130950 | None:intergenic | 35.0% |
| TTAGACAGATTGGAGATTTG+GGG | - | chr1_1:13131178-13131197 | None:intergenic | 35.0% | |
| GTTTAGACAGATTGGAGATT+TGG | - | chr1_1:13131180-13131199 | None:intergenic | 35.0% | |
| AGATGAAAAATTTGGGGGTT+AGG | - | chr1_1:13131202-13131221 | None:intergenic | 35.0% | |
| GATGGAGATGAAAAATTTGG+GGG | - | chr1_1:13131207-13131226 | None:intergenic | 35.0% | |
| !! | AACAATTGAGTGGATTGAGA+TGG | - | chr1_1:13131225-13131244 | None:intergenic | 35.0% |
| TTCAGTTTCATACTCCATCT+CGG | + | chr1_1:13131330-13131349 | Msa0009020:intron | 35.0% | |
| GATATAGTATTGCGACTGTT+AGG | + | chr1_1:13131661-13131680 | Msa0009020:intron | 35.0% | |
| GTATCTTCCACTAATTCCAA+GGG | + | chr1_1:13132002-13132021 | Msa0009020:intron | 35.0% | |
| TATCTTCCACTAATTCCAAG+GGG | + | chr1_1:13132003-13132022 | Msa0009020:intron | 35.0% | |
| ! | ATTATTGTAGTGCTATTGCG+GGG | + | chr1_1:13132075-13132094 | Msa0009020:intron | 35.0% |
| CAACCGTTCAATTATGATTG+TGG | + | chr1_1:13132252-13132271 | Msa0009020:intron | 35.0% | |
| ATGATGAACATTGTATCAGC+TGG | + | chr1_1:13132294-13132313 | Msa0009020:intron | 35.0% | |
| ! | GTTAGTCTCATTTAACGGTA+GGG | - | chr1_1:13133014-13133033 | None:intergenic | 35.0% |
| ! | TGTTAGTCTCATTTAACGGT+AGG | - | chr1_1:13133015-13133034 | None:intergenic | 35.0% |
| ! | CCACTGTTAGTCTCATTTAA+CGG | - | chr1_1:13133019-13133038 | None:intergenic | 35.0% |
| CGTTAAATGAGACTAACAGT+GGG | + | chr1_1:13133017-13133036 | Msa0009020:intron | 35.0% | |
| AGTGCCACATGTATATTTCT+TGG | + | chr1_1:13133049-13133068 | Msa0009020:intron | 35.0% | |
| !!! | GTTTTACAGGTTTTTAGCCA+CGG | + | chr1_1:13133097-13133116 | Msa0009020:intron | 35.0% |
| !!! | TTTTAGCCACGGTTTTTTCA+AGG | + | chr1_1:13133108-13133127 | Msa0009020:intron | 35.0% |
| !!! | GGTTTTTTCAAGGTTAGCTA+CGG | + | chr1_1:13133118-13133137 | Msa0009020:intron | 35.0% |
| ! | AGAATTCTGGAAATTAGCCA+CGG | - | chr1_1:13133149-13133168 | None:intergenic | 35.0% |
| ! | TTCAATACTTTTGCTCGATC+TGG | + | chr1_1:13133212-13133231 | Msa0009020:intron | 35.0% |
| AAATTAGGGCTTAGGCTTTA+TGG | + | chr1_1:13133257-13133276 | Msa0009020:intron | 35.0% | |
| ! | AATTAGGGCTTAGGCTTTAT+GGG | + | chr1_1:13133258-13133277 | Msa0009020:intron | 35.0% |
| TCACCCCACTTAAAATATGT+TGG | - | chr1_1:13133589-13133608 | None:intergenic | 35.0% | |
| ! | TGGCCGATTTAGTAACTATT+TGG | - | chr1_1:13133662-13133681 | None:intergenic | 35.0% |
| TTGTGGATCTCACTTATATG+TGG | - | chr1_1:13133682-13133701 | None:intergenic | 35.0% | |
| !!! | AAGACTTTTTAAGTGGGTTG+TGG | - | chr1_1:13133699-13133718 | None:intergenic | 35.0% |
| !! | GGTGGAAAAGACTTTTTAAG+TGG | - | chr1_1:13133706-13133725 | None:intergenic | 35.0% |
| ! | AGTGTTTTCTGTACTAGTTG+TGG | + | chr1_1:13133736-13133755 | Msa0009020:intron | 35.0% |
| CAAAAAAGAGCCATACATGT+TGG | + | chr1_1:13133769-13133788 | Msa0009020:intron | 35.0% | |
| AGGCTCTTTGGTCTATATAT+TGG | + | chr1_1:13133810-13133829 | Msa0009020:intron | 35.0% | |
| ! | TGTATTGTCCCACTTGTTAA+TGG | + | chr1_1:13133955-13133974 | Msa0009020:intron | 35.0% |
| TTCTTGCTCCATTAACAAGT+GGG | - | chr1_1:13133966-13133985 | None:intergenic | 35.0% | |
| ATTCTTGCTCCATTAACAAG+TGG | - | chr1_1:13133967-13133986 | None:intergenic | 35.0% | |
| CAAGTGATTAACAATGAGGA+AGG | + | chr1_1:13134034-13134053 | Msa0009020:intron | 35.0% | |
| AGTTAAGGAACCCATAAATG+AGG | - | chr1_1:13134069-13134088 | None:intergenic | 35.0% | |
| AACAAATTATGCCATGAAGG+AGG | - | chr1_1:13134387-13134406 | None:intergenic | 35.0% | |
| GCAAACAAATTATGCCATGA+AGG | - | chr1_1:13134390-13134409 | None:intergenic | 35.0% | |
| !! | CATGGCATAATTTGTTTGCA+AGG | + | chr1_1:13134391-13134410 | Msa0009020:intron | 35.0% |
| TATTGAGTACATGAGTCTTG+AGG | - | chr1_1:13134550-13134569 | None:intergenic | 35.0% | |
| AAGGCTAAGAAAACCAAGTT+GGG | - | chr1_1:13134599-13134618 | None:intergenic | 35.0% | |
| ATATCACACCCCTCTATATT+TGG | + | chr1_1:13134901-13134920 | Msa0009020:intron | 35.0% | |
| ACTAAGTGATTGAACTCAAG+CGG | + | chr1_1:13134930-13134949 | Msa0009020:intron | 35.0% | |
| ATTGTATCATGATCATGGAC+TGG | + | chr1_1:13135085-13135104 | Msa0009020:intron | 35.0% | |
| TATAATCACACCATGCCTTA+AGG | - | chr1_1:13135114-13135133 | None:intergenic | 35.0% | |
| GGCGAAATTTATAGTAGTGT+TGG | - | chr1_1:13135180-13135199 | None:intergenic | 35.0% | |
| GGTCGCTAAAGCATAAATAT+TGG | + | chr1_1:13135218-13135237 | Msa0009020:intron | 35.0% | |
| TTTGTGACTGAAATAGAGAC+CGG | - | chr1_1:13135280-13135299 | None:intergenic | 35.0% | |
| !! | GTACGTAAAAGTGCTTGATA+TGG | + | chr1_1:13135420-13135439 | Msa0009020:intron | 35.0% |
| CAAAAAACTAGTCCATTAGG+TGG | - | chr1_1:13135467-13135486 | None:intergenic | 35.0% | |
| !!! | CACCTAATGGACTAGTTTTT+TGG | + | chr1_1:13135465-13135484 | Msa0009020:intron | 35.0% |
| ACCCAAAAAACTAGTCCATT+AGG | - | chr1_1:13135470-13135489 | None:intergenic | 35.0% | |
| !!! | AATGGACTAGTTTTTTGGGT+TGG | + | chr1_1:13135470-13135489 | Msa0009020:intron | 35.0% |
| GTTGGACTCTCCTTAATTAT+GGG | + | chr1_1:13135488-13135507 | Msa0009020:intron | 35.0% | |
| AGGATTGAAGCCCATAATTA+AGG | - | chr1_1:13135501-13135520 | None:intergenic | 35.0% | |
| GTGAAACCAAAGAAAAGGAA+AGG | + | chr1_1:13135608-13135627 | Msa0009020:intron | 35.0% | |
| ! | TTAAAGGGTGTGACAATGTT+AGG | + | chr1_1:13135683-13135702 | Msa0009020:intron | 35.0% |
| TTCACTCACCTGTAAGTATT+TGG | + | chr1_1:13135811-13135830 | Msa0009020:intron | 35.0% | |
| GTAATCCACCAAATACTTAC+AGG | - | chr1_1:13135822-13135841 | None:intergenic | 35.0% | |
| GCTATATATAGGCTGGATTA+AGG | - | chr1_1:13135844-13135863 | None:intergenic | 35.0% | |
| CTACAGAAAGGGCTATATAT+AGG | - | chr1_1:13135855-13135874 | None:intergenic | 35.0% | |
| TGAGAGTTAGACTACAGAAA+GGG | - | chr1_1:13135866-13135885 | None:intergenic | 35.0% | |
| TTGAGAGTTAGACTACAGAA+AGG | - | chr1_1:13135867-13135886 | None:intergenic | 35.0% | |
| CAATGAAAGCAACAACTGTT+AGG | + | chr1_1:13135884-13135903 | Msa0009020:intron | 35.0% | |
| !!! | ATGGACTAGTCTTTTAGGTT+GGG | - | chr1_1:13135930-13135949 | None:intergenic | 35.0% |
| !!! | AATGGACTAGTCTTTTAGGT+TGG | - | chr1_1:13135931-13135950 | None:intergenic | 35.0% |
| ! | ACCTAAAAGACTAGTCCATT+AGG | + | chr1_1:13135931-13135950 | Msa0009020:intron | 35.0% |
| !!! | ACCTAATGGACTAGTCTTTT+AGG | - | chr1_1:13135935-13135954 | None:intergenic | 35.0% |
| ! | TAAAAGACTAGTCCATTAGG+TGG | + | chr1_1:13135934-13135953 | Msa0009020:intron | 35.0% |
| ! | AAAAGACTAGTCCATTAGGT+GGG | + | chr1_1:13135935-13135954 | Msa0009020:intron | 35.0% |
| ! | GATGATCATACATGGAGTTT+TGG | + | chr1_1:13136911-13136930 | Msa0009020:intron | 35.0% |
| TTATTTACTACCGCTTGAAG+GGG | - | chr1_1:13137138-13137157 | None:intergenic | 35.0% | |
| GTTTATTTACTACCGCTTGA+AGG | - | chr1_1:13137140-13137159 | None:intergenic | 35.0% | |
| TAAAACTACATTCCCTACGT+AGG | + | chr1_1:13137323-13137342 | Msa0009020:intron | 35.0% | |
| TACCGACAATTTCATTGTTG+AGG | + | chr1_1:13137403-13137422 | Msa0009020:intron | 35.0% | |
| GTCCTCAACAATGAAATTGT+CGG | - | chr1_1:13137408-13137427 | None:intergenic | 35.0% | |
| CAATATCAGGAACGACATTA+GGG | - | chr1_1:13137577-13137596 | None:intergenic | 35.0% | |
| AAATTCTGACAGCCAATATC+AGG | - | chr1_1:13137590-13137609 | None:intergenic | 35.0% | |
| TATAATATACCGGAACACAC+AGG | - | chr1_1:13137637-13137656 | None:intergenic | 35.0% | |
| AGGAGAAAAAACAACTAGCT+AGG | + | chr1_1:13137849-13137868 | Msa0009020:intron | 35.0% | |
| CTAGGCTAAATACAACAGAA+TGG | + | chr1_1:13130175-13130194 | Msa0009020:intron | 35.0% | |
| AGGCTAAATACAACAGAATG+GGG | + | chr1_1:13130177-13130196 | Msa0009020:intron | 35.0% | |
| ATGATTTAGCATACCTGGAA+TGG | + | chr1_1:13138128-13138147 | Msa0009020:CDS | 35.0% | |
| CAAAAGATGCAACTGATATC+GGG | + | chr1_1:13130496-13130515 | Msa0009020:CDS | 35.0% | |
| GAATATAGGATTGTTTCGGT+TGG | - | chr1_1:13138266-13138285 | None:intergenic | 35.0% | |
| TGTGGTGTAAGATATAAGTC+GGG | + | chr1_1:13138592-13138611 | Msa0009020:CDS | 35.0% | |
| !!! | AAATCTGGTTTTGTTGGTGT+TGG | - | chr1_1:13138735-13138754 | None:intergenic | 35.0% |
| TAAAATCAGGTCCCATATGT+TGG | - | chr1_1:13138813-13138832 | None:intergenic | 35.0% | |
| ! | AACATATGGGACCTGATTTT+AGG | + | chr1_1:13138812-13138831 | Msa0009020:CDS | 35.0% |
| TACATCATCTGCCTAAAATC+AGG | - | chr1_1:13138826-13138845 | None:intergenic | 35.0% | |
| GAAATAGGAGGATGATGTAG+CGG | + | chr1_1:13130420-13130439 | Msa0009020:intron | 40.0% | |
| CAATATTGGAAAGCCATTCC+AGG | - | chr1_1:13130447-13130466 | None:intergenic | 40.0% | |
| AAGACTCTTGGCCAATATCA+CGG | - | chr1_1:13130642-13130661 | None:intergenic | 40.0% | |
| GCTGAGATTGTTCAACTTGA+AGG | + | chr1_1:13130753-13130772 | Msa0009020:intron | 40.0% | |
| TGAATTGCTTGAGCTGTTGA+AGG | + | chr1_1:13130807-13130826 | Msa0009020:intron | 40.0% | |
| GAGGAAGATATTGTGTCCAA+TGG | + | chr1_1:13130876-13130895 | Msa0009020:intron | 40.0% | |
| ! | TTTGAGGCAGTTACAAACCA+GGG | - | chr1_1:13130978-13130997 | None:intergenic | 40.0% |
| GAGAAAGCAGGAATGGAATA+TGG | - | chr1_1:13131087-13131106 | None:intergenic | 40.0% | |
| TAAGAGTGAGAAAGCAGGAA+TGG | - | chr1_1:13131094-13131113 | None:intergenic | 40.0% | |
| GAAAGTAAGAGTGAGAAAGC+AGG | - | chr1_1:13131099-13131118 | None:intergenic | 40.0% | |
| GTAAGTAAGATGGAGAAAGC+GGG | - | chr1_1:13131155-13131174 | None:intergenic | 40.0% | |
| GGTAAGTAAGATGGAGAAAG+CGG | - | chr1_1:13131156-13131175 | None:intergenic | 40.0% | |
| AGATTTGGGGGTAAGTAAGA+TGG | - | chr1_1:13131165-13131184 | None:intergenic | 40.0% | |
| TAGACAGATTGGAGATTTGG+GGG | - | chr1_1:13131177-13131196 | None:intergenic | 40.0% | |
| GGTTAGGCATAACAATTGAG+TGG | - | chr1_1:13131235-13131254 | None:intergenic | 40.0% | |
| ATTGAGAGCTAGGTTAGGTT+AGG | - | chr1_1:13131251-13131270 | None:intergenic | 40.0% | |
| GAGTATGAAACTGAACTCGA+CGG | - | chr1_1:13131325-13131344 | None:intergenic | 40.0% | |
| AACATTTGCGACTGTTGTGA+AGG | + | chr1_1:13131577-13131596 | Msa0009020:intron | 40.0% | |
| ACATTTGCGACTGTTGTGAA+GGG | + | chr1_1:13131578-13131597 | Msa0009020:intron | 40.0% | |
| ! | ATACTTTGCGACAGTTCTGA+AGG | + | chr1_1:13131632-13131651 | Msa0009020:intron | 40.0% |
| !! | TACTTTGCGACAGTTCTGAA+GGG | + | chr1_1:13131633-13131652 | Msa0009020:intron | 40.0% |
| !! | AACTGTCGCAAAAGGTATTG+CGG | - | chr1_1:13131692-13131711 | None:intergenic | 40.0% |
| ! | AACTGTCTTTTGCGACAGTT+CGG | - | chr1_1:13131729-13131748 | None:intergenic | 40.0% |
| TTGAAGAAATGTCCTACGTG+TGG | + | chr1_1:13131901-13131920 | Msa0009020:intron | 40.0% | |
| TGAAGAAATGTCCTACGTGT+GGG | + | chr1_1:13131902-13131921 | Msa0009020:intron | 40.0% | |
| AGATACCATAACACCTTTGC+AGG | - | chr1_1:13131988-13132007 | None:intergenic | 40.0% | |
| GGTATCTTCCACTAATTCCA+AGG | + | chr1_1:13132001-13132020 | Msa0009020:intron | 40.0% | |
| GAATAACCCCTTGGAATTAG+TGG | - | chr1_1:13132012-13132031 | None:intergenic | 40.0% | |
| TCAAGTTAGGAATAACCCCT+TGG | - | chr1_1:13132021-13132040 | None:intergenic | 40.0% | |
| TGGTTTGAGAAAGCTGAGAA+AGG | + | chr1_1:13132112-13132131 | Msa0009020:intron | 40.0% | |
| ! | AGCTGGTATGACTGATTCAT+GGG | + | chr1_1:13132311-13132330 | Msa0009020:intron | 40.0% |
| ! | TATGACTGATTCATGGGATC+TGG | + | chr1_1:13132317-13132336 | Msa0009020:intron | 40.0% |
| CCGTTAAATGAGACTAACAG+TGG | + | chr1_1:13133016-13133035 | Msa0009020:intron | 40.0% | |
| AGCTAACCTTGAAAAAACCG+TGG | - | chr1_1:13133117-13133136 | None:intergenic | 40.0% | |
| TTGCTCGATCTGGTTAGAAT+AGG | + | chr1_1:13133222-13133241 | Msa0009020:intron | 40.0% | |
| GATCTGGTTAGAATAGGAGA+GGG | + | chr1_1:13133228-13133247 | Msa0009020:intron | 40.0% | |
| TATGGGTGAACACAAAATCC+AGG | + | chr1_1:13133275-13133294 | Msa0009020:intron | 40.0% | |
| !! | AATCCAGGTTGGTTTGAGAT+CGG | + | chr1_1:13133290-13133309 | Msa0009020:intron | 40.0% |
| !! | GGCTTTTACAGTTTTAGCCA+CGG | - | chr1_1:13133366-13133385 | None:intergenic | 40.0% |
| CGTTAAATGAGACTAACGGA+GGG | - | chr1_1:13133451-13133470 | None:intergenic | 40.0% | |
| ! | CCTCCGTTAGTCTCATTTAA+CGG | + | chr1_1:13133449-13133468 | Msa0009020:intron | 40.0% |
| CCACCGTTAAATGAGACTAA+CGG | - | chr1_1:13133455-13133474 | None:intergenic | 40.0% | |
| ! | CGTTAGTCTCATTTAACGGT+GGG | + | chr1_1:13133453-13133472 | Msa0009020:intron | 40.0% |
| ! | GTTAGTCTCATTTAACGGTG+GGG | + | chr1_1:13133454-13133473 | Msa0009020:intron | 40.0% |
| ! | TATTGGCCTAACCTTCTAGT+TGG | + | chr1_1:13133827-13133846 | Msa0009020:intron | 40.0% |
| TCATCACCAACTAGAAGGTT+AGG | - | chr1_1:13133836-13133855 | None:intergenic | 40.0% | |
| CCTTAACTGCTTCAGTAAAG+CGG | + | chr1_1:13134081-13134100 | Msa0009020:intron | 40.0% | |
| !! | TATGTCGGTTTCCCTTGTTA+AGG | + | chr1_1:13134329-13134348 | Msa0009020:intron | 40.0% |
| !! | ATGTCGGTTTCCCTTGTTAA+GGG | + | chr1_1:13134330-13134349 | Msa0009020:intron | 40.0% |
| TGGTACTATAAACATGGAGC+TGG | + | chr1_1:13134473-13134492 | Msa0009020:intron | 40.0% | |
| GAGTCAAAGCTTGGTAGAAA+TGG | - | chr1_1:13134517-13134536 | None:intergenic | 40.0% | |
| TCTTAGACTGAGTCAAAGCT+TGG | - | chr1_1:13134526-13134545 | None:intergenic | 40.0% | |
| GAAGGCTAAGAAAACCAAGT+TGG | - | chr1_1:13134600-13134619 | None:intergenic | 40.0% | |
| ATCAATGGAAGGTTGTGTGA+AGG | - | chr1_1:13134618-13134637 | None:intergenic | 40.0% | |
| TCACACAACCTTCCATTGAT+TGG | + | chr1_1:13134618-13134637 | Msa0009020:intron | 40.0% | |
| ! | CACACAACCTTCCATTGATT+GGG | + | chr1_1:13134619-13134638 | Msa0009020:intron | 40.0% |
| ACAAAGAACCACCCAATCAA+TGG | - | chr1_1:13134633-13134652 | None:intergenic | 40.0% | |
| ATCGGCATAAAGGCGATTAA+GGG | - | chr1_1:13134660-13134679 | None:intergenic | 40.0% | |
| CCAATAATCGAACTCTTGAG+GGG | - | chr1_1:13134966-13134985 | None:intergenic | 40.0% | |
| CCCAATAATCGAACTCTTGA+GGG | - | chr1_1:13134967-13134986 | None:intergenic | 40.0% | |
| CCCTCAAGAGTTCGATTATT+GGG | + | chr1_1:13134964-13134983 | Msa0009020:intron | 40.0% | |
| ACCCAATAATCGAACTCTTG+AGG | - | chr1_1:13134968-13134987 | None:intergenic | 40.0% | |
| ACAAAATAGGGACCACTAAC+CGG | + | chr1_1:13135258-13135277 | Msa0009020:intron | 40.0% | |
| ! | CTTTTGCAACCAAAACTGTC+AGG | + | chr1_1:13135384-13135403 | Msa0009020:intron | 40.0% |
| GGTTGGACTCTCCTTAATTA+TGG | + | chr1_1:13135487-13135506 | Msa0009020:intron | 40.0% | |
| !! | CAATGAAAGCACCAAGTGTT+AGG | - | chr1_1:13135521-13135540 | None:intergenic | 40.0% |
| ! | CTTATAGGTAGCCCTTTTTG+TGG | - | chr1_1:13135553-13135572 | None:intergenic | 40.0% |
| CAAAAAGGGCTACCTATAAG+TGG | + | chr1_1:13135553-13135572 | Msa0009020:intron | 40.0% | |
| !! | GGCTACCTATAAGTGGATTA+AGG | + | chr1_1:13135560-13135579 | Msa0009020:intron | 40.0% |
| GGTGAGTGAAACCAAAGAAA+AGG | + | chr1_1:13135603-13135622 | Msa0009020:intron | 40.0% | |
| AAAAAGGAAAGGGCTACCAT+CGG | - | chr1_1:13135785-13135804 | None:intergenic | 40.0% | |
| TGAAGCCGCTAAAAAGGAAA+GGG | - | chr1_1:13135795-13135814 | None:intergenic | 40.0% | |
| ACTCACCTGTAAGTATTTGG+TGG | + | chr1_1:13135814-13135833 | Msa0009020:intron | 40.0% | |
| AGAAAGGGCTATATATAGGC+TGG | - | chr1_1:13135851-13135870 | None:intergenic | 40.0% | |
| GATGTGGTAATTAAGCCATG+AGG | - | chr1_1:13135965-13135984 | None:intergenic | 40.0% | |
| TGAAATCTAGCAAAGCACGT+TGG | - | chr1_1:13136655-13136674 | None:intergenic | 40.0% | |
| AAAGGCTTGAGAGAGAGTAA+AGG | - | chr1_1:13137174-13137193 | None:intergenic | 40.0% | |
| GGGTGACTAATATGAAGTTG+TGG | - | chr1_1:13137206-13137225 | None:intergenic | 40.0% | |
| ! | GGTGGTTTGGAAAATGTTGT+TGG | - | chr1_1:13137363-13137382 | None:intergenic | 40.0% |
| ! | ATTGTCGGTAGTGTTGTTGT+CGG | - | chr1_1:13137393-13137412 | None:intergenic | 40.0% |
| CAACGTCATTGTTGAGGTTA+AGG | - | chr1_1:13137433-13137452 | None:intergenic | 40.0% | |
| CCAATATCAGGAACGACATT+AGG | - | chr1_1:13137578-13137597 | None:intergenic | 40.0% | |
| CCTAATGTCGTTCCTGATAT+TGG | + | chr1_1:13137575-13137594 | Msa0009020:CDS | 40.0% | |
| ! | TTTTCTGACAGCCATTTCTC+CGG | + | chr1_1:13137608-13137627 | Msa0009020:CDS | 40.0% |
| AAACGATTCCTCACCAACAT+GGG | - | chr1_1:13138158-13138177 | None:intergenic | 40.0% | |
| AAAACGATTCCTCACCAACA+TGG | - | chr1_1:13138159-13138178 | None:intergenic | 40.0% | |
| ! | AGTTCTGACTCAGAAGAAGA+CGG | - | chr1_1:13138388-13138407 | None:intergenic | 40.0% |
| AAAGACTGCTCCAAGAAGAA+AGG | + | chr1_1:13138459-13138478 | Msa0009020:CDS | 40.0% | |
| !! | CATAATGTTTTCGGGCCATT+AGG | - | chr1_1:13138565-13138584 | None:intergenic | 40.0% |
| AAGATATAAGTCGGGTCGAT+TGG | + | chr1_1:13138600-13138619 | Msa0009020:CDS | 40.0% | |
| ACAGAATGGGGCACATTTCA+CGG | + | chr1_1:13130189-13130208 | Msa0009020:intron | 45.0% | |
| !! | TGAGGAATCGTTTTCAAGCG+AGG | + | chr1_1:13130468-13130487 | Msa0009020:CDS | 45.0% |
| ! | TATGGATGATCATCGGCTAG+AGG | + | chr1_1:13130609-13130628 | Msa0009020:intron | 45.0% |
| GAGGACATGATCCGTGATAT+TGG | + | chr1_1:13130628-13130647 | Msa0009020:intron | 45.0% | |
| CAAGGAAGAGCCTTTGTATC+CGG | + | chr1_1:13130699-13130718 | Msa0009020:intron | 45.0% | |
| AAGGAAGAGCCTTTGTATCC+GGG | + | chr1_1:13130700-13130719 | Msa0009020:intron | 45.0% | |
| GTGCACAAAATTCTCACCGT+TGG | + | chr1_1:13130723-13130742 | Msa0009020:intron | 45.0% | |
| ! | AAAATTCTCACCGTTGGCTG+CGG | + | chr1_1:13130729-13130748 | Msa0009020:intron | 45.0% |
| TTGAAGGAAATGCTCCCACA+AGG | + | chr1_1:13130823-13130842 | Msa0009020:intron | 45.0% | |
| CGGGCAATGTATTACCTTGT+GGG | - | chr1_1:13130840-13130859 | None:intergenic | 45.0% | |
| TCGGGCAATGTATTACCTTG+TGG | - | chr1_1:13130841-13130860 | None:intergenic | 45.0% | |
| ATTGCCCGATCGTAACTATG+AGG | + | chr1_1:13130852-13130871 | Msa0009020:intron | 45.0% | |
| TTGAGGCAGTTACAAACCAG+GGG | - | chr1_1:13130977-13130996 | None:intergenic | 45.0% | |
| !! | CTTTGAGGCAGTTACAAACC+AGG | - | chr1_1:13130979-13130998 | None:intergenic | 45.0% |
| TGTCGCAAAGATGCACTTTG+AGG | - | chr1_1:13130994-13131013 | None:intergenic | 45.0% | |
| GACAGTTGTTGCGACTGTTT+GGG | + | chr1_1:13131010-13131029 | Msa0009020:intron | 45.0% | |
| GGGGTTAGGTTTAGACAGAT+TGG | - | chr1_1:13131188-13131207 | None:intergenic | 45.0% | |
| GAACGATTGAGAGCTAGGTT+AGG | - | chr1_1:13131256-13131275 | None:intergenic | 45.0% | |
| TGACTGAACGATTGAGAGCT+AGG | - | chr1_1:13131261-13131280 | None:intergenic | 45.0% | |
| GTCGTCATTCTACTCATCAG+AGG | + | chr1_1:13131352-13131371 | Msa0009020:intron | 45.0% | |
| CAGAACTGTCGCAAAGTATG+TGG | - | chr1_1:13131631-13131650 | None:intergenic | 45.0% | |
| ! | GCAATACCTTTTGCGACAGT+TGG | + | chr1_1:13131691-13131710 | Msa0009020:intron | 45.0% |
| ! | ACTGATTCCGACTGTTAGAC+GGG | - | chr1_1:13131805-13131824 | None:intergenic | 45.0% |
| ! | GACTGATTCCGACTGTTAGA+CGG | - | chr1_1:13131806-13131825 | None:intergenic | 45.0% |
| GCTATCACGCTACAAAGTGA+AGG | + | chr1_1:13131924-13131943 | Msa0009020:intron | 45.0% | |
| TACCATAACACCTTTGCAGG+AGG | - | chr1_1:13131985-13132004 | None:intergenic | 45.0% | |
| AAGCTGAGAAAGGCAACATG+AGG | + | chr1_1:13132122-13132141 | Msa0009020:intron | 45.0% | |
| ! | CAGCTGGTATGACTGATTCA+TGG | + | chr1_1:13132310-13132329 | Msa0009020:intron | 45.0% |
| CGATCTGGTTAGAATAGGAG+AGG | + | chr1_1:13133227-13133246 | Msa0009020:intron | 45.0% | |
| GGTGAACACAAAATCCAGGT+TGG | + | chr1_1:13133279-13133298 | Msa0009020:intron | 45.0% | |
| !! | GTTGGTTTGAGATCGGATGA+TGG | + | chr1_1:13133297-13133316 | Msa0009020:intron | 45.0% |
| AATTAGCTACTGTTTGGCCG+TGG | + | chr1_1:13133346-13133365 | Msa0009020:intron | 45.0% | |
| AAATGAGACTAACGGAGGGT+TGG | - | chr1_1:13133447-13133466 | None:intergenic | 45.0% | |
| CCGTTAAATGAGACTAACGG+AGG | - | chr1_1:13133452-13133471 | None:intergenic | 45.0% | |
| ! | CCGTTAGTCTCATTTAACGG+TGG | + | chr1_1:13133452-13133471 | Msa0009020:intron | 45.0% |
| CGTCATCATCACCAACTAGA+AGG | - | chr1_1:13133841-13133860 | None:intergenic | 45.0% | |
| TGGTGTATGCACCTGAGATA+TGG | - | chr1_1:13133890-13133909 | None:intergenic | 45.0% | |
| CCGCTTTACTGAAGCAGTTA+AGG | - | chr1_1:13134084-13134103 | None:intergenic | 45.0% | |
| !! | AGCAACATAAAGGCGCTGAT+TGG | + | chr1_1:13134157-13134176 | Msa0009020:intron | 45.0% |
| !! | TGTCGGTTTCCCTTGTTAAG+GGG | + | chr1_1:13134331-13134350 | Msa0009020:intron | 45.0% |
| GAAACTGATAGCCAAATGGC+AGG | - | chr1_1:13134365-13134384 | None:intergenic | 45.0% | |
| GGAGGAAACTGATAGCCAAA+TGG | - | chr1_1:13134369-13134388 | None:intergenic | 45.0% | |
| GCTATCAGTTTCCTCCTTCA+TGG | + | chr1_1:13134373-13134392 | Msa0009020:intron | 45.0% | |
| TCATCGCTCCTTGCAGTTAA+TGG | + | chr1_1:13134453-13134472 | Msa0009020:intron | 45.0% | |
| ! | ACAACCTTCCATTGATTGGG+TGG | + | chr1_1:13134622-13134641 | Msa0009020:intron | 45.0% |
| AGAACCACCCAATCAATGGA+AGG | - | chr1_1:13134629-13134648 | None:intergenic | 45.0% | |
| CATCGGCATAAAGGCGATTA+AGG | - | chr1_1:13134661-13134680 | None:intergenic | 45.0% | |
| AATCGCCTTTATGCCGATGT+TGG | + | chr1_1:13134662-13134681 | Msa0009020:intron | 45.0% | |
| GTTAGCCAACATCGGCATAA+AGG | - | chr1_1:13134670-13134689 | None:intergenic | 45.0% | |
| CCCCTCAAGAGTTCGATTAT+TGG | + | chr1_1:13134963-13134982 | Msa0009020:intron | 45.0% | |
| TGTTTCCATAGGAAAGGTCC+TGG | - | chr1_1:13135042-13135061 | None:intergenic | 45.0% | |
| AATCACACCATGCCTTAAGG+AGG | - | chr1_1:13135111-13135130 | None:intergenic | 45.0% | |
| !! | AATTATGGGTTAGGCTGGTG+TGG | - | chr1_1:13135138-13135157 | None:intergenic | 45.0% |
| CTGAAATAGAGACCGGTTAG+TGG | - | chr1_1:13135273-13135292 | None:intergenic | 45.0% | |
| ! | CACTTTTACGTACCCGATGT+GGG | - | chr1_1:13135413-13135432 | None:intergenic | 45.0% |
| GATATGGTACTTGAGCCATG+AGG | + | chr1_1:13135436-13135455 | Msa0009020:intron | 45.0% | |
| TGGGCTTCAATCCTAACACT+TGG | + | chr1_1:13135507-13135526 | Msa0009020:intron | 45.0% | |
| ! | GGTAGCCCTTTCCTTTTCTT+TGG | - | chr1_1:13135617-13135636 | None:intergenic | 45.0% |
| CTCTATCGACACTGATACGA+TGG | - | chr1_1:13135638-13135657 | None:intergenic | 45.0% | |
| TTAAGATCCGACGTCCACAA+CGG | - | chr1_1:13135667-13135686 | None:intergenic | 45.0% | |
| TTGTGGACGTCGGATCTTAA+AGG | + | chr1_1:13135667-13135686 | Msa0009020:intron | 45.0% | |
| TGTGGACGTCGGATCTTAAA+GGG | + | chr1_1:13135668-13135687 | Msa0009020:intron | 45.0% | |
| !! | CAATGTTAGGAGTGCCACAT+CGG | + | chr1_1:13135696-13135715 | Msa0009020:intron | 45.0% |
| !! | AATGTTAGGAGTGCCACATC+GGG | + | chr1_1:13135697-13135716 | Msa0009020:intron | 45.0% |
| ! | GCACTTTTACTTACCCGATG+TGG | - | chr1_1:13135713-13135732 | None:intergenic | 45.0% |
| AAAAGGAAAGGGCTACCATC+GGG | - | chr1_1:13135620-13135639 | None:intergenic | 45.0% | |
| ! | GGTAGCCCTTTCCTTTTTAG+CGG | + | chr1_1:13135787-13135806 | Msa0009020:intron | 45.0% |
| GTGAAGCCGCTAAAAAGGAA+AGG | - | chr1_1:13135796-13135815 | None:intergenic | 45.0% | |
| AAGCACGTTGGCGTTTGAAT+TGG | - | chr1_1:13136643-13136662 | None:intergenic | 45.0% | |
| TGTATGAAGTCCCCTTCAAG+CGG | + | chr1_1:13137125-13137144 | Msa0009020:intron | 45.0% | |
| GAGAGAGAGTAAAGGAGAAG+AGG | - | chr1_1:13137166-13137185 | None:intergenic | 45.0% | |
| CTACATTCCCTACGTAGGAA+TGG | + | chr1_1:13137328-13137347 | Msa0009020:intron | 45.0% | |
| ATTCCCTACGTAGGAATGGA+AGG | + | chr1_1:13137332-13137351 | Msa0009020:intron | 45.0% | |
| ! | AGTGTTGTTGTCGGAGGAAA+AGG | - | chr1_1:13137384-13137403 | None:intergenic | 45.0% |
| CGTCATTGTTGAGGTTAAGG+AGG | - | chr1_1:13137430-13137449 | None:intergenic | 45.0% | |
| !! | AAGGTTGGTGTCGGAAATGA+TGG | - | chr1_1:13137468-13137487 | None:intergenic | 45.0% |
| AACGCTATTGACCACGGTAA+CGG | - | chr1_1:13137528-13137547 | None:intergenic | 45.0% | |
| GTTAGCTCGTCATCATTGTC+CGG | + | chr1_1:13137545-13137564 | Msa0009020:CDS | 45.0% | |
| TTAGCTCGTCATCATTGTCC+GGG | + | chr1_1:13137546-13137565 | Msa0009020:CDS | 45.0% | |
| ACAGAATGGGGCACATTTCA+CGG | + | chr1_1:13130189-13130208 | Msa0009020:intron | 45.0% | |
| GGAGGATGATTTAGCATACC+TGG | + | chr1_1:13138123-13138142 | Msa0009020:intron | 45.0% | |
| CAACATGGGAAATCCATTCC+AGG | - | chr1_1:13138144-13138163 | None:intergenic | 45.0% | |
| ! | CTGGAATGGATTTCCCATGT+TGG | + | chr1_1:13138142-13138161 | Msa0009020:CDS | 45.0% |
| ATGGATTTCCCATGTTGGTG+AGG | + | chr1_1:13138147-13138166 | Msa0009020:CDS | 45.0% | |
| !! | TGAGGAATCGTTTTCAAGCG+AGG | + | chr1_1:13130468-13130487 | Msa0009020:CDS | 45.0% |
| AGGATTGTTTCGGTTGGGTT+GGG | - | chr1_1:13138260-13138279 | None:intergenic | 45.0% | |
| TAGGATTGTTTCGGTTGGGT+TGG | - | chr1_1:13138261-13138280 | None:intergenic | 45.0% | |
| !!! | GGAAGTTTTGGTTCCAGCTA+AGG | + | chr1_1:13138291-13138310 | Msa0009020:CDS | 45.0% |
| CCAAGAAGAAAGGACAGTGA+CGG | + | chr1_1:13138469-13138488 | Msa0009020:CDS | 45.0% | |
| CAACACTTTACGATGCGAGT+TGG | - | chr1_1:13138677-13138696 | None:intergenic | 45.0% | |
| CAACTCGCATCGTAAAGTGT+TGG | + | chr1_1:13138675-13138694 | Msa0009020:CDS | 45.0% | |
| !! | GTAAAGTGTTGGAGCTACGA+AGG | + | chr1_1:13138686-13138705 | Msa0009020:CDS | 45.0% |
| GAAGGCAGAAGGAAATGTTG+CGG | + | chr1_1:13138704-13138723 | Msa0009020:CDS | 45.0% | |
| AAGGCAGAAGGAAATGTTGC+GGG | + | chr1_1:13138705-13138724 | Msa0009020:CDS | 45.0% | |
| !! | AAAAAAAAATAATATTTGAA+CGG | - | chr1_1:13131546-13131565 | None:intergenic | 5.0% |
| !! | ATGATGTAGCGGACCTGGAA+TGG | + | chr1_1:13130431-13130450 | Msa0009020:CDS | 50.0% |
| GCAACTGATATCGGGCATGA+AGG | + | chr1_1:13130504-13130523 | Msa0009020:CDS | 50.0% | |
| AGGACTGTTTCCGTTGGGTT+GGG | - | chr1_1:13130563-13130582 | None:intergenic | 50.0% | |
| TAGGACTGTTTCCGTTGGGT+TGG | - | chr1_1:13130564-13130583 | None:intergenic | 50.0% | |
| AGGAAGAGCCTTTGTATCCG+GGG | + | chr1_1:13130701-13130720 | Msa0009020:intron | 50.0% | |
| TTTGTGCACCCCGGATACAA+AGG | - | chr1_1:13130712-13130731 | None:intergenic | 50.0% | |
| ! | GGTGAGAATTTTGTGCACCC+CGG | - | chr1_1:13130721-13130740 | None:intergenic | 50.0% |
| CTCGCCTCATAGTTACGATC+GGG | - | chr1_1:13130859-13130878 | None:intergenic | 50.0% | |
| CCTCGCCTCATAGTTACGAT+CGG | - | chr1_1:13130860-13130879 | None:intergenic | 50.0% | |
| CGACAGTTGTTGCGACTGTT+TGG | + | chr1_1:13131009-13131028 | Msa0009020:intron | 50.0% | |
| GAGTAGAATGACGACCGAGA+TGG | - | chr1_1:13131347-13131366 | None:intergenic | 50.0% | |
| GACACACCAACTGTCGCAAA+AGG | - | chr1_1:13131700-13131719 | None:intergenic | 50.0% | |
| TTTGCGACCCGTCTAACAGT+CGG | + | chr1_1:13131795-13131814 | Msa0009020:intron | 50.0% | |
| !! | GTCCTCCTGCAAAGGTGTTA+TGG | + | chr1_1:13131980-13131999 | Msa0009020:intron | 50.0% |
| ! | GCGGGGTGTAATAAGTTGAG+TGG | + | chr1_1:13132092-13132111 | Msa0009020:intron | 50.0% |
| ! | GGTTAGCTACGGTTAAACCG+TGG | + | chr1_1:13133129-13133148 | Msa0009020:intron | 50.0% |
| CATCCGATCTCAAACCAACC+TGG | - | chr1_1:13133296-13133315 | None:intergenic | 50.0% | |
| ! | GGTTTGAGATCGGATGATGG+AGG | + | chr1_1:13133300-13133319 | Msa0009020:intron | 50.0% |
| CTCGCAAAATTAGTCGAGCG+AGG | - | chr1_1:13134306-13134325 | None:intergenic | 50.0% | |
| GCACGTGAACCCCTTAACAA+GGG | - | chr1_1:13134343-13134362 | None:intergenic | 50.0% | |
| ! | TGAGTAAGGAAGCACGGTCA+AGG | - | chr1_1:13134436-13134455 | None:intergenic | 50.0% |
| GAGCGATGAGTAAGGAAGCA+CGG | - | chr1_1:13134442-13134461 | None:intergenic | 50.0% | |
| ACTGCAAGGAGCGATGAGTA+AGG | - | chr1_1:13134450-13134469 | None:intergenic | 50.0% | |
| !! | CAATCTCGAGTTGGACATGG+AGG | - | chr1_1:13135019-13135038 | None:intergenic | 50.0% |
| !! | TGGCAATCTCGAGTTGGACA+TGG | - | chr1_1:13135022-13135041 | None:intergenic | 50.0% |
| ATGTCCAACTCGAGATTGCC+AGG | + | chr1_1:13135021-13135040 | Msa0009020:intron | 50.0% | |
| GATTGCCAGGACCTTTCCTA+TGG | + | chr1_1:13135034-13135053 | Msa0009020:intron | 50.0% | |
| !! | ATCATGGACTGGCCTCCTTA+AGG | + | chr1_1:13135096-13135115 | Msa0009020:intron | 50.0% |
| ! | TGTGGGACTCCTGACAGTTT+TGG | - | chr1_1:13135396-13135415 | None:intergenic | 50.0% |
| AACTGTCAGGAGTCCCACAT+CGG | + | chr1_1:13135397-13135416 | Msa0009020:intron | 50.0% | |
| ! | GCACTTTTACGTACCCGATG+TGG | - | chr1_1:13135414-13135433 | None:intergenic | 50.0% |
| CGATAGAGTGAAAGCCGTTG+TGG | + | chr1_1:13135650-13135669 | Msa0009020:intron | 50.0% | |
| CATGAGACTCTCCCACCTAA+TGG | + | chr1_1:13135751-13135770 | Msa0009020:intron | 50.0% | |
| CGGGTACTAGTCCATTAGGT+GGG | - | chr1_1:13135765-13135784 | None:intergenic | 50.0% | |
| TCGGGTACTAGTCCATTAGG+TGG | - | chr1_1:13135766-13135785 | None:intergenic | 50.0% | |
| CCATCGGGTACTAGTCCATT+AGG | - | chr1_1:13135769-13135788 | None:intergenic | 50.0% | |
| !! | CCTAATGGACTAGTACCCGA+TGG | + | chr1_1:13135766-13135785 | Msa0009020:intron | 50.0% |
| GGTGAGTGAAGCCGCTAAAA+AGG | - | chr1_1:13135801-13135820 | None:intergenic | 50.0% | |
| TGTTAGGACCTAAGCCCATG+AGG | + | chr1_1:13135900-13135919 | Msa0009020:intron | 50.0% | |
| !! | TTAGGTTGGGCTCTCCTCAT+GGG | - | chr1_1:13135917-13135936 | None:intergenic | 50.0% |
| !! | TTTAGGTTGGGCTCTCCTCA+TGG | - | chr1_1:13135918-13135937 | None:intergenic | 50.0% |
| GTGCCTTCCATTCCTACGTA+GGG | - | chr1_1:13137338-13137357 | None:intergenic | 50.0% | |
| TGTGCCTTCCATTCCTACGT+AGG | - | chr1_1:13137339-13137358 | None:intergenic | 50.0% | |
| TGTCGGAGGAAAAGGTGGTT+TGG | - | chr1_1:13137376-13137395 | None:intergenic | 50.0% | |
| GTTGTTGTCGGAGGAAAAGG+TGG | - | chr1_1:13137381-13137400 | None:intergenic | 50.0% | |
| CGTCGTCAACGTCATTGTTG+AGG | - | chr1_1:13137439-13137458 | None:intergenic | 50.0% | |
| TTCCGACACCAACCTTGACT+CGG | + | chr1_1:13137472-13137491 | Msa0009020:CDS | 50.0% | |
| CGAGCTAACGCTATTGACCA+CGG | - | chr1_1:13137534-13137553 | None:intergenic | 50.0% | |
| GCAACTGATATCGGGCATGA+AGG | + | chr1_1:13130504-13130523 | Msa0009020:CDS | 50.0% | |
| ACAGTGACGGTAGGTAAGGT+GGG | - | chr1_1:13138424-13138443 | None:intergenic | 50.0% | |
| AACAGTGACGGTAGGTAAGG+TGG | - | chr1_1:13138425-13138444 | None:intergenic | 50.0% | |
| TGGAACAGTGACGGTAGGTA+AGG | - | chr1_1:13138428-13138447 | None:intergenic | 50.0% | |
| TACCTACCGTCACTGTTCCA+AGG | + | chr1_1:13138428-13138447 | Msa0009020:CDS | 50.0% | |
| TTCCTTGGAACAGTGACGGT+AGG | - | chr1_1:13138433-13138452 | None:intergenic | 50.0% | |
| CTGCTTCCTTGGAACAGTGA+CGG | - | chr1_1:13138437-13138456 | None:intergenic | 50.0% | |
| CCGTCACTGTCCTTTCTTCT+TGG | - | chr1_1:13138472-13138491 | None:intergenic | 50.0% | |
| AGAAGAAAGGACAGTGACGG+AGG | + | chr1_1:13138472-13138491 | Msa0009020:CDS | 50.0% | |
| ! | GAAGAAAGGACAGTGACGGA+GGG | + | chr1_1:13138473-13138492 | Msa0009020:CDS | 50.0% |
| TGACAGACAAGACACCACAG+TGG | + | chr1_1:13138530-13138549 | Msa0009020:CDS | 50.0% | |
| !! | ACAAATGTAGGGCTAGCTGC+AGG | - | chr1_1:13138640-13138659 | None:intergenic | 50.0% |
| !! | TTGGGTTGGGAAAGCTCACG+GGG | - | chr1_1:13130550-13130569 | None:intergenic | 55.0% |
| !! | GTTGGGTTGGGAAAGCTCAC+GGG | - | chr1_1:13130551-13130570 | None:intergenic | 55.0% |
| !! | CGTTGGGTTGGGAAAGCTCA+CGG | - | chr1_1:13130552-13130571 | None:intergenic | 55.0% |
| CGTGAGCTTTCCCAACCCAA+CGG | + | chr1_1:13130550-13130569 | Msa0009020:intron | 55.0% | |
| GCGCTCGCTGAAAAGACTCT+TGG | - | chr1_1:13130654-13130673 | None:intergenic | 55.0% | |
| AATCTCAGCACCGCAGCCAA+CGG | - | chr1_1:13130742-13130761 | None:intergenic | 55.0% | |
| CCGATCGTAACTATGAGGCG+AGG | + | chr1_1:13130857-13130876 | Msa0009020:intron | 55.0% | |
| ACTGAACTCGACGGAGACGT+CGG | - | chr1_1:13131316-13131335 | None:intergenic | 55.0% | |
| ACCCCAACATCCGCGTCTAT+TGG | + | chr1_1:13131752-13131771 | Msa0009020:intron | 55.0% | |
| CCCAATAGACGCGGATGTTG+GGG | - | chr1_1:13131756-13131775 | None:intergenic | 55.0% | |
| CCCCAACATCCGCGTCTATT+GGG | + | chr1_1:13131753-13131772 | Msa0009020:intron | 55.0% | |
| CCCCAATAGACGCGGATGTT+GGG | - | chr1_1:13131757-13131776 | None:intergenic | 55.0% | |
| CCCAACATCCGCGTCTATTG+GGG | + | chr1_1:13131754-13131773 | Msa0009020:intron | 55.0% | |
| TCCCCAATAGACGCGGATGT+TGG | - | chr1_1:13131758-13131777 | None:intergenic | 55.0% | |
| CGACTGTTCCCCAATAGACG+CGG | - | chr1_1:13131765-13131784 | None:intergenic | 55.0% | |
| TAGCGTGATAGCCCACACGT+AGG | - | chr1_1:13131916-13131935 | None:intergenic | 55.0% | |
| ! | CTCAAAGCGTCCTCCTGCAA+AGG | + | chr1_1:13131972-13131991 | Msa0009020:intron | 55.0% |
| TCGGGTCGCCCCACTTAAAA+AGG | - | chr1_1:13132864-13132883 | None:intergenic | 55.0% | |
| GAGACTAACAGTGGGTGACG+TGG | + | chr1_1:13133025-13133044 | Msa0009020:intron | 55.0% | |
| GGCACGTGAACCCCTTAACA+AGG | - | chr1_1:13134344-13134363 | None:intergenic | 55.0% | |
| AGGTCCTGGCAATCTCGAGT+TGG | - | chr1_1:13135028-13135047 | None:intergenic | 55.0% | |
| ACTGTCAGGAGTCCCACATC+GGG | + | chr1_1:13135398-13135417 | Msa0009020:intron | 55.0% | |
| CATTAGGTGGGAGAGCCTCA+TGG | - | chr1_1:13135947-13135966 | None:intergenic | 55.0% | |
| CATGAGGCTCTCCCACCTAA+TGG | + | chr1_1:13135452-13135471 | Msa0009020:intron | 55.0% | |
| GTGAAAGCCGTTGTGGACGT+CGG | + | chr1_1:13135657-13135676 | Msa0009020:intron | 55.0% | |
| CATGAGGCTCTCCCACCTAA+TGG | - | chr1_1:13135452-13135471 | None:intergenic | 55.0% | |
| CATTAGGTGGGAGAGCCTCA+TGG | + | chr1_1:13135947-13135966 | Msa0009020:intron | 55.0% | |
| ! | GTCGGTAGTGTTGTTGTCGG+AGG | - | chr1_1:13137390-13137409 | None:intergenic | 55.0% |
| !! | AGAGGCAGTTGAGTTGACCG+TGG | - | chr1_1:13137498-13137517 | None:intergenic | 55.0% |
| ! | ATTGACCACGGTAACGGTGG+AGG | - | chr1_1:13137522-13137541 | None:intergenic | 55.0% |
| ! | GCTATTGACCACGGTAACGG+TGG | - | chr1_1:13137525-13137544 | None:intergenic | 55.0% |
| AACGACATTAGGGTCGCACC+CGG | - | chr1_1:13137567-13137586 | None:intergenic | 55.0% | |
| CACACAGGTCTCCGGAGAAA+TGG | - | chr1_1:13137622-13137641 | None:intergenic | 55.0% | |
| TACCGGAACACACAGGTCTC+CGG | - | chr1_1:13137630-13137649 | None:intergenic | 55.0% | |
| !! | TTGGGTTGGGAAAGCTCACG+GGG | - | chr1_1:13130550-13130569 | None:intergenic | 55.0% |
| !! | GTTGGGTTGGGAAAGCTCAC+GGG | - | chr1_1:13130551-13130570 | None:intergenic | 55.0% |
| !! | GGTTGGGTTGGGAAAGCTCA+CGG | - | chr1_1:13138249-13138268 | None:intergenic | 55.0% |
| GTAAGGTGGGGGTGGGAATA+AGG | - | chr1_1:13138411-13138430 | None:intergenic | 55.0% | |
| AGTGACGGTAGGTAAGGTGG+GGG | - | chr1_1:13138422-13138441 | None:intergenic | 55.0% | |
| CAGTGACGGTAGGTAAGGTG+GGG | - | chr1_1:13138423-13138442 | None:intergenic | 55.0% | |
| CGTCACTGTTCCAAGGAAGC+AGG | + | chr1_1:13138435-13138454 | Msa0009020:CDS | 55.0% | |
| GCAGTCTTTGCCTGCTTCCT+TGG | - | chr1_1:13138448-13138467 | None:intergenic | 55.0% | |
| AAGACACCACAGTGGCGAAC+CGG | + | chr1_1:13138538-13138557 | Msa0009020:CDS | 55.0% | |
| !! | TGTTTTCGGGCCATTAGGCC+CGG | - | chr1_1:13138560-13138579 | None:intergenic | 55.0% |
| ! | GTCGATTGGTGCCCGAATAC+AGG | + | chr1_1:13138614-13138633 | Msa0009020:CDS | 55.0% |
| CTAGCTGCAGGCCTGTATTC+GGG | - | chr1_1:13138628-13138647 | None:intergenic | 55.0% | |
| GCTAGCTGCAGGCCTGTATT+CGG | - | chr1_1:13138629-13138648 | None:intergenic | 55.0% | |
| GTTGGAGCTACGAAGGCAGA+AGG | + | chr1_1:13138693-13138712 | Msa0009020:CDS | 55.0% | |
| !! | GGAGGATGATGTAGCGGACC+TGG | + | chr1_1:13130426-13130445 | Msa0009020:intron | 60.0% |
| ! | GGGCATGAAGGTGCGAAACC+AGG | + | chr1_1:13130516-13130535 | Msa0009020:intron | 60.0% |
| GACACTTCATCTGCGACCCC+TGG | + | chr1_1:13130958-13130977 | Msa0009020:intron | 60.0% | |
| GGGTTCACGTGCCTGCCATT+TGG | + | chr1_1:13134351-13134370 | Msa0009020:intron | 60.0% | |
| !! | GGACTGGCCTCCTTAAGGCA+TGG | + | chr1_1:13135101-13135120 | Msa0009020:intron | 60.0% |
| TGGGCTCTCCTCATGGGCTT+AGG | - | chr1_1:13135911-13135930 | None:intergenic | 60.0% | |
| !! | GGCCGAGTCAAGGTTGGTGT+CGG | - | chr1_1:13137477-13137496 | None:intergenic | 60.0% |
| !! | CACCAACCTTGACTCGGCCA+CGG | + | chr1_1:13137478-13137497 | Msa0009020:CDS | 60.0% |
| AGTTGACCGTGGCCGAGTCA+AGG | - | chr1_1:13137487-13137506 | None:intergenic | 60.0% | |
| ! | CACGGTAACGGTGGAGGAAG+AGG | - | chr1_1:13137516-13137535 | None:intergenic | 60.0% |
| CTCTTCCTCCACCGTTACCG+TGG | + | chr1_1:13137514-13137533 | Msa0009020:CDS | 60.0% | |
| CTCCGGAGACCTGTGTGTTC+CGG | + | chr1_1:13137625-13137644 | Msa0009020:CDS | 60.0% | |
| ! | GGGCATGAAGGTGCGAAACC+AGG | + | chr1_1:13130516-13130535 | Msa0009020:intron | 60.0% |
| CTCTTGCTACGGGCCTTAGC+TGG | - | chr1_1:13138307-13138326 | None:intergenic | 60.0% | |
| CAGCTAAGGCCCGTAGCAAG+AGG | + | chr1_1:13138305-13138324 | Msa0009020:CDS | 60.0% | |
| CCCACGAGTCCTCTTGCTAC+GGG | - | chr1_1:13138317-13138336 | None:intergenic | 60.0% | |
| CCCGTAGCAAGAGGACTCGT+GGG | + | chr1_1:13138314-13138333 | Msa0009020:CDS | 60.0% | |
| GCCCACGAGTCCTCTTGCTA+CGG | - | chr1_1:13138318-13138337 | None:intergenic | 60.0% | |
| ACGTGAGCTCCAGTCGCAAG+GGG | - | chr1_1:13138341-13138360 | None:intergenic | 60.0% | |
| GACGTGAGCTCCAGTCGCAA+GGG | - | chr1_1:13138342-13138361 | None:intergenic | 60.0% | |
| AGACGTGAGCTCCAGTCGCA+AGG | - | chr1_1:13138343-13138362 | None:intergenic | 60.0% | |
| ACGGTAGGTAAGGTGGGGGT+GGG | - | chr1_1:13138418-13138437 | None:intergenic | 60.0% | |
| ! | AAGGACAGTGACGGAGGGTC+AGG | + | chr1_1:13138478-13138497 | Msa0009020:CDS | 60.0% |
| GAGGGTCAGGTGGAGATGGT+CGG | + | chr1_1:13138491-13138510 | Msa0009020:CDS | 60.0% | |
| AGACACCACAGTGGCGAACC+GGG | + | chr1_1:13138539-13138558 | Msa0009020:CDS | 60.0% | |
| GCTCACGGGGTTCTTCGTCC+TGG | - | chr1_1:13130537-13130556 | None:intergenic | 65.0% | |
| GAACTCGACGGAGACGTCGG+AGG | - | chr1_1:13131313-13131332 | None:intergenic | 65.0% | |
| GACCGTGGCCGAGTCAAGGT+TGG | - | chr1_1:13137483-13137502 | None:intergenic | 65.0% | |
| GCTCACGGGGTTCTTCGTCC+TGG | - | chr1_1:13130537-13130556 | None:intergenic | 65.0% | |
| GCCCGTAGCAAGAGGACTCG+TGG | + | chr1_1:13138313-13138332 | Msa0009020:CDS | 65.0% | |
| CGTGAGCTCCAGTCGCAAGG+GGG | - | chr1_1:13138340-13138359 | None:intergenic | 65.0% | |
| GACGGTAGGTAAGGTGGGGG+TGG | - | chr1_1:13138419-13138438 | None:intergenic | 65.0% | |
| ! | GACAGTGACGGAGGGTCAGG+TGG | + | chr1_1:13138481-13138500 | Msa0009020:CDS | 65.0% |
| GACGGAGGGTCAGGTGGAGA+TGG | + | chr1_1:13138487-13138506 | Msa0009020:CDS | 65.0% | |
| GGTCAGGTGGAGATGGTCGG+AGG | + | chr1_1:13138494-13138513 | Msa0009020:CDS | 65.0% | |
| ! | TTAGGCCCGGTTCGCCACTG+TGG | - | chr1_1:13138547-13138566 | None:intergenic | 65.0% |
| CAGTGGCGAACCGGGCCTAA+TGG | + | chr1_1:13138547-13138566 | Msa0009020:CDS | 65.0% | |
| CTCGACGGAGACGTCGGAGG+AGG | - | chr1_1:13131310-13131329 | None:intergenic | 70.0% | |
| CTCGTGGGCCCCCTTGCGAC+TGG | + | chr1_1:13138329-13138348 | Msa0009020:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 13130085 | 13138846 | 13130085 | ID=Msa0009020;Name=Msa0009020 |
| chr1_1 | mRNA | 13130085 | 13138846 | 13130085 | ID=Msa0009020-mRNA-1;Parent=Msa0009020;Name=Msa0009020-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0|0|0.75|0.33|0.25|4|0|349 |
| chr1_1 | exon | 13130085 | 13130090 | 13130085 | ID=Msa0009020-mRNA-1:exon:4945;Parent=Msa0009020-mRNA-1 |
| chr1_1 | exon | 13130427 | 13130525 | 13130427 | ID=Msa0009020-mRNA-1:exon:4946;Parent=Msa0009020-mRNA-1 |
| chr1_1 | exon | 13137425 | 13137646 | 13137425 | ID=Msa0009020-mRNA-1:exon:4947;Parent=Msa0009020-mRNA-1 |
| chr1_1 | exon | 13138124 | 13138846 | 13138124 | ID=Msa0009020-mRNA-1:exon:4948;Parent=Msa0009020-mRNA-1 |
| chr1_1 | CDS | 13130085 | 13130090 | 13130085 | ID=Msa0009020-mRNA-1:cds;Parent=Msa0009020-mRNA-1 |
| chr1_1 | CDS | 13130427 | 13130525 | 13130427 | ID=Msa0009020-mRNA-1:cds;Parent=Msa0009020-mRNA-1 |
| chr1_1 | CDS | 13137425 | 13137646 | 13137425 | ID=Msa0009020-mRNA-1:cds;Parent=Msa0009020-mRNA-1 |
| chr1_1 | CDS | 13138124 | 13138846 | 13138124 | ID=Msa0009020-mRNA-1:cds;Parent=Msa0009020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
