AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0009330

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0009330 MtrunA17_Chr1g0186061 96.484 256 9 0 1 256 1 256 0.0 509
Msa0009330 MtrunA17_Chr1g0168661 63.636 264 87 5 2 264 3 258 2.22e-106 308
Msa0009330 MtrunA17_Chr1g0209661 65.455 110 38 0 16 125 23 132 3.34e-52 172
Msa0009330 MtrunA17_Chr7g0228231 68.571 105 33 0 21 125 15 119 5.75e-52 168
Msa0009330 MtrunA17_Chr6g0450101 67.619 105 34 0 21 125 15 119 1.87e-51 167
Msa0009330 MtrunA17_Chr1g0194291 68.571 105 33 0 21 125 22 126 2.27e-50 166
Msa0009330 MtrunA17_Chr1g0194301 65.714 105 36 0 21 125 34 138 1.70e-49 164
Msa0009330 MtrunA17_Chr4g0039971 61.468 109 42 0 16 124 9 117 3.42e-48 163
Msa0009330 MtrunA17_Chr5g0434571 40.639 219 111 5 21 227 49 260 8.88e-48 162
Msa0009330 MtrunA17_Chr3g0115821 61.468 109 42 0 16 124 8 116 1.32e-47 161
Msa0009330 MtrunA17_Chr7g0275911 63.810 105 38 0 22 126 14 118 1.97e-46 155
Msa0009330 MtrunA17_Chr4g0057031 65.385 104 36 0 21 124 13 116 2.56e-46 155
Msa0009330 MtrunA17_Chr8g0346561 65.385 104 36 0 22 125 14 117 3.76e-46 156
Msa0009330 MtrunA17_Chr3g0131121 61.261 111 43 0 14 124 6 116 7.53e-46 155
Msa0009330 MtrunA17_Chr4g0037141 49.660 147 70 2 14 160 6 148 7.63e-46 155
Msa0009330 MtrunA17_Chr2g0327821 58.929 112 46 0 15 126 1 112 8.82e-46 153
Msa0009330 MtrunA17_Chr5g0395281 55.963 109 48 0 16 124 8 116 1.78e-45 154
Msa0009330 MtrunA17_Chr4g0068061 65.385 104 36 0 21 124 13 116 1.81e-45 155
Msa0009330 MtrunA17_Chr4g0030881 60.909 110 36 1 21 123 8 117 4.89e-45 152
Msa0009330 MtrunA17_Chr1g0187761 57.522 113 48 0 21 133 13 125 5.21e-45 152
Msa0009330 MtrunA17_Chr2g0293911 67.619 105 34 0 21 125 25 129 6.22e-45 154
Msa0009330 MtrunA17_Chr7g0217741 63.462 104 38 0 21 124 13 116 7.84e-45 153
Msa0009330 MtrunA17_Chr1g0193371 60.177 113 45 0 13 125 5 117 8.02e-45 154
Msa0009330 MtrunA17_Chr1g0180391 38.565 223 120 6 21 237 20 231 9.91e-45 150
Msa0009330 MtrunA17_Chr4g0070611 61.905 105 40 0 22 126 14 118 1.02e-44 152
Msa0009330 MtrunA17_Chr4g0070641 61.905 105 40 0 22 126 14 118 1.04e-44 148
Msa0009330 MtrunA17_Chr3g0121241 63.208 106 39 0 21 126 43 148 1.05e-44 152
Msa0009330 MtrunA17_Chr8g0385321 60.360 111 44 0 14 124 6 116 1.94e-44 152
Msa0009330 MtrunA17_Chr3g0110351 62.857 105 39 0 21 125 13 117 2.22e-44 152
Msa0009330 MtrunA17_Chr2g0328771 51.079 139 60 1 21 151 21 159 2.22e-44 152
Msa0009330 MtrunA17_Chr5g0410961 56.780 118 51 0 21 138 13 130 2.45e-44 152
Msa0009330 MtrunA17_Chr7g0274581 58.095 105 44 0 21 125 13 117 2.52e-44 149
Msa0009330 MtrunA17_Chr8g0349261 60.952 105 40 1 21 124 14 118 4.57e-44 150
Msa0009330 MtrunA17_Chr1g0203411 58.095 105 44 0 21 125 13 117 6.25e-44 150
Msa0009330 MtrunA17_Chr2g0281071 59.615 104 42 0 21 124 14 117 6.59e-44 151
Msa0009330 MtrunA17_Chr4g0068921 65.714 105 36 0 21 125 25 129 8.13e-44 147
Msa0009330 MtrunA17_Chr7g0261281 54.400 125 53 2 21 145 13 133 2.52e-43 148
Msa0009330 MtrunA17_Chr5g0435101 59.223 103 42 0 22 124 13 115 4.45e-43 145
Msa0009330 MtrunA17_Chr1g0167691 50.388 129 62 1 21 149 13 139 6.53e-43 146
Msa0009330 MtrunA17_Chr2g0323411 59.615 104 42 0 21 124 13 116 7.04e-43 148
Msa0009330 MtrunA17_Chr4g0048511 58.654 104 43 0 21 124 14 117 8.23e-43 149
Msa0009330 MtrunA17_Chr3g0117091 48.551 138 69 1 19 156 11 146 8.62e-43 149
Msa0009330 MtrunA17_Chr3g0099131 61.165 103 40 0 21 123 42 144 1.13e-42 152
Msa0009330 MtrunA17_Chr8g0342541 56.250 112 49 0 13 124 5 116 1.24e-42 148
Msa0009330 MtrunA17_Chr1g0167661 50.781 128 61 1 21 148 13 138 1.30e-42 145
Msa0009330 MtrunA17_Chr4g0022931 48.592 142 72 1 21 161 14 155 2.27e-42 145
Msa0009330 MtrunA17_Chr4g0042671 61.538 104 40 0 21 124 13 116 2.51e-42 149
Msa0009330 MtrunA17_Chr3g0080861 57.391 115 49 0 11 125 28 142 2.56e-42 151
Msa0009330 MtrunA17_Chr7g0228891 47.403 154 75 2 21 171 13 163 2.56e-42 145
Msa0009330 MtrunA17_Chr2g0330041 55.357 112 50 0 13 124 5 116 3.47e-42 148
Msa0009330 MtrunA17_Chr1g0211161 59.434 106 43 0 19 124 12 117 3.55e-42 144
Msa0009330 MtrunA17_Chr4g0044421 59.223 103 42 0 22 124 14 116 3.58e-42 142
Msa0009330 MtrunA17_Chr6g0453471 60.577 104 41 0 21 124 13 116 4.15e-42 147
Msa0009330 MtrunA17_Chr8g0342521 57.143 112 48 0 13 124 5 116 4.79e-42 147
Msa0009330 MtrunA17_Chr1g0203441 54.918 122 52 1 19 140 12 130 4.81e-42 145
Msa0009330 MtrunA17_Chr8g0354661 62.136 103 39 0 21 123 38 140 7.32e-42 150
Msa0009330 MtrunA17_Chr3g0092401 43.671 158 87 1 21 176 14 171 7.45e-42 145
Msa0009330 MtrunA17_Chr7g0271241 62.500 104 39 0 13 116 5 108 1.07e-41 147
Msa0009330 MtrunA17_Chr2g0323351 47.651 149 72 3 21 165 13 159 1.90e-41 142
Msa0009330 MtrunA17_Chr7g0270891 56.637 113 49 0 13 125 5 117 1.98e-41 145
Msa0009330 MtrunA17_Chr1g0193801 56.637 113 49 0 13 125 5 117 2.21e-41 146
Msa0009330 MtrunA17_Chr6g0470971 56.881 109 47 0 15 123 9 117 3.43e-41 143
Msa0009330 MtrunA17_Chr4g0060721 45.695 151 79 1 21 168 14 164 3.89e-41 144
Msa0009330 MtrunA17_Chr1g0154031 60.194 103 41 0 21 123 77 179 5.29e-41 145
Msa0009330 MtrunA17_Chr2g0309911 53.509 114 53 0 11 124 2 115 5.46e-41 143
Msa0009330 MtrunA17_Chr4g0032401 58.559 111 46 0 18 128 15 125 6.19e-41 143
Msa0009330 MtrunA17_Chr7g0217221 58.095 105 44 0 21 125 13 117 9.03e-41 141
Msa0009330 MtrunA17_Chr4g0022881 58.824 102 42 0 21 122 13 114 1.26e-40 140
Msa0009330 MtrunA17_Chr4g0022901 59.223 103 42 0 21 123 14 116 1.32e-40 141
Msa0009330 MtrunA17_Chr1g0194951 59.615 104 42 0 21 124 13 116 1.75e-40 143
Msa0009330 MtrunA17_Chr4g0058631 58.491 106 44 0 19 124 11 116 4.18e-40 142
Msa0009330 MtrunA17_Chr3g0088461 54.955 111 50 0 15 125 17 127 5.01e-40 141
Msa0009330 MtrunA17_Chr7g0254411 50.400 125 56 1 21 139 13 137 5.93e-40 141
Msa0009330 MtrunA17_Chr8g0387421 54.867 113 51 0 13 125 5 117 6.98e-40 140
Msa0009330 MtrunA17_Chr1g0151941 52.727 110 51 1 16 124 8 117 1.26e-39 138
Msa0009330 MtrunA17_Chr8g0343831 58.333 108 44 1 22 128 10 117 1.38e-39 138
Msa0009330 MtrunA17_Chr8g0342481 53.982 113 51 1 13 124 5 117 2.61e-39 140
Msa0009330 MtrunA17_Chr3g0103281 54.955 111 50 0 14 124 6 116 6.08e-39 138
Msa0009330 MtrunA17_Chr4g0022911 56.311 103 45 0 21 123 14 116 7.74e-39 137
Msa0009330 MtrunA17_Chr5g0417821 57.692 104 44 0 21 124 8 111 1.88e-38 136
Msa0009330 MtrunA17_Chr6g0452271 55.769 104 46 0 21 124 13 116 5.90e-38 135
Msa0009330 MtrunA17_Chr4g0022891 40.645 155 87 2 21 170 13 167 6.18e-38 133
Msa0009330 MtrunA17_Chr4g0055981 52.212 113 54 0 22 134 57 169 6.62e-38 133
Msa0009330 MtrunA17_Chr1g0152011 53.333 120 53 2 21 137 13 132 7.92e-38 135
Msa0009330 MtrunA17_Chr5g0397231 54.717 106 48 0 13 118 5 110 9.58e-38 135
Msa0009330 MtrunA17_Chr7g0269831 63.462 104 38 0 21 124 13 116 1.37e-37 135
Msa0009330 MtrunA17_Chr2g0322521 61.165 103 40 0 21 123 30 132 1.88e-37 135
Msa0009330 MtrunA17_Chr6g0453211 57.576 99 42 0 21 119 13 111 3.05e-37 133
Msa0009330 MtrunA17_Chr7g0240821 47.692 130 64 1 25 154 6 131 3.42e-37 131
Msa0009330 MtrunA17_Chr2g0327351 59.596 99 39 1 21 118 13 111 5.57e-37 133
Msa0009330 MtrunA17_Chr4g0028311 55.238 105 46 1 21 124 13 117 1.67e-36 132
Msa0009330 MtrunA17_Chr7g0264641 52.212 113 53 1 21 132 13 125 3.07e-36 129
Msa0009330 MtrunA17_Chr1g0192411 54.206 107 49 0 19 125 11 117 3.49e-36 132
Msa0009330 MtrunA17_Chr2g0311221 56.566 99 43 0 21 119 15 113 4.03e-36 130
Msa0009330 MtrunA17_Chr3g0135311 55.238 105 46 1 21 124 13 117 4.95e-36 131
Msa0009330 MtrunA17_Chr5g0400821 45.985 137 70 2 21 156 13 146 7.11e-36 129
Msa0009330 MtrunA17_Chr5g0434931 54.808 104 47 0 21 124 36 139 4.48e-35 127
Msa0009330 MtrunA17_Chr5g0434911 41.290 155 89 1 21 173 22 176 5.71e-35 126
Msa0009330 MtrunA17_Chr7g0220341 35.185 216 126 6 21 232 26 231 1.75e-34 125
Msa0009330 MtrunA17_Chr5g0434831 53.153 111 51 1 15 124 1 111 4.06e-34 122
Msa0009330 MtrunA17_Chr4g0054391 55.670 97 42 1 21 116 13 109 4.58e-34 124
Msa0009330 MtrunA17_Chr7g0228991 54.808 104 47 0 21 124 30 133 1.24e-33 123
Msa0009330 MtrunA17_Chr3g0099141 58.140 86 36 0 16 101 36 121 2.22e-33 118
Msa0009330 MtrunA17_Chr8g0334881 50.962 104 50 1 16 118 6 109 3.98e-33 122
Msa0009330 MtrunA17_Chr5g0440781 50.485 103 50 1 21 122 13 115 5.37e-33 119
Msa0009330 MtrunA17_Chr5g0441141 33.898 236 136 6 21 238 13 246 7.36e-33 121
Msa0009330 MtrunA17_Chr8g0360111 54.000 100 46 0 21 120 26 125 8.36e-33 120
Msa0009330 MtrunA17_Chr5g0440761 36.316 190 113 4 21 204 13 200 1.06e-32 120
Msa0009330 MtrunA17_Chr4g0072751 54.545 99 44 1 21 118 13 111 1.38e-32 122
Msa0009330 MtrunA17_Chr6g0487491 47.059 119 54 2 14 123 6 124 1.79e-32 119
Msa0009330 MtrunA17_Chr4g0013361 42.537 134 72 2 21 149 11 144 2.63e-32 120
Msa0009330 MtrunA17_Chr7g0247131 64.474 76 27 0 51 126 9 84 3.03e-32 119
Msa0009330 MtrunA17_Chr5g0434841 50.450 111 54 1 15 124 14 124 2.07e-31 118
Msa0009330 MtrunA17_Chr3g0133601 50.485 103 48 2 22 123 37 137 6.90e-31 114
Msa0009330 MtrunA17_Chr5g0441131 48.113 106 54 1 21 125 10 115 8.75e-31 113
Msa0009330 MtrunA17_Chr5g0401731 48.276 116 56 3 9 123 3 115 3.29e-29 112
Msa0009330 MtrunA17_Chr6g0454921 40.268 149 78 4 22 162 15 160 4.18e-29 109
Msa0009330 MtrunA17_Chr8g0342511 54.217 83 38 0 13 95 5 87 1.71e-28 104
Msa0009330 MtrunA17_Chr8g0342531 54.118 85 39 0 13 97 5 89 1.82e-28 106
Msa0009330 MtrunA17_Chr4g0008551 49.515 103 49 2 22 123 38 138 1.85e-28 111
Msa0009330 MtrunA17_Chr4g0042611 58.025 81 34 0 16 96 8 88 3.50e-28 103
Msa0009330 MtrunA17_Chr4g0053431 49.020 102 51 1 22 123 5 105 3.98e-28 108
Msa0009330 MtrunA17_Chr5g0395221 55.263 76 34 0 21 96 13 88 5.08e-28 102
Msa0009330 MtrunA17_Chr2g0294811 56.250 80 35 0 21 100 13 92 6.14e-28 103
Msa0009330 MtrunA17_Chr5g0429661 53.125 96 42 2 22 116 122 215 7.52e-28 109
Msa0009330 MtrunA17_Chr2g0323321 58.750 80 33 0 21 100 12 91 7.54e-28 103
Msa0009330 MtrunA17_Chr8g0342461 51.163 86 41 1 13 97 5 90 9.58e-27 101
Msa0009330 MtrunA17_Chr8g0342471 51.163 86 41 1 13 97 5 90 2.08e-26 100
Msa0009330 MtrunA17_Chr5g0437321 49.000 100 48 2 22 120 19 116 9.02e-26 102
Msa0009330 MtrunA17_Chr7g0238631 48.077 104 51 2 22 124 113 214 1.45e-25 105
Msa0009330 MtrunA17_Chr7g0238631 37.963 108 65 2 19 125 58 164 4.83e-14 71.6
Msa0009330 MtrunA17_Chr4g0058991 50.000 96 45 2 22 116 209 302 5.98e-25 102
Msa0009330 MtrunA17_Chr3g0139671 44.231 104 55 2 22 124 85 186 6.49e-25 103
Msa0009330 MtrunA17_Chr3g0139671 33.645 107 69 2 19 124 30 135 4.61e-12 65.9
Msa0009330 MtrunA17_Chr1g0157731 45.192 104 54 2 22 124 91 192 9.61e-25 103
Msa0009330 MtrunA17_Chr1g0157731 33.645 107 69 2 19 124 36 141 3.37e-12 66.2
Msa0009330 MtrunA17_Chr3g0117511 46.939 98 49 2 20 116 181 276 9.98e-25 102
Msa0009330 MtrunA17_Chr5g0425591 48.780 82 41 1 21 101 10 91 4.11e-23 90.5
Msa0009330 MtrunA17_Chr5g0397841 50.000 96 45 2 22 116 110 203 8.95e-23 97.1
Msa0009330 MtrunA17_Chr6g0480581 44.898 98 51 2 22 118 4 99 9.36e-23 93.6
Msa0009330 MtrunA17_Chr5g0417621 41.818 110 61 2 22 130 134 241 3.90e-22 94.7
Msa0009330 MtrunA17_Chr7g0228531 45.361 97 51 2 22 118 220 314 7.46e-22 94.0
Msa0009330 MtrunA17_Chr7g0238651 45.545 101 52 2 25 123 10 109 9.64e-22 92.8
Msa0009330 MtrunA17_Chr6g0453751 48.889 90 37 2 21 101 21 110 1.23e-21 87.8
Msa0009330 MtrunA17_Chr4g0042501 38.095 126 74 3 22 145 105 228 1.33e-21 93.2
Msa0009330 MtrunA17_Chr6g0460661 39.796 98 56 2 22 118 16 111 1.43e-21 88.6
Msa0009330 MtrunA17_Chr7g0229101 56.338 71 31 0 51 121 3 73 1.58e-21 89.7
Msa0009330 MtrunA17_Chr3g0093811 54.054 74 34 0 51 124 13 86 2.33e-21 90.5
Msa0009330 MtrunA17_Chr7g0229131 51.351 74 36 0 51 124 3 76 9.95e-21 86.3
Msa0009330 MtrunA17_Chr3g0125801 44.660 103 54 2 22 123 16 116 3.24e-20 87.8
Msa0009330 MtrunA17_Chr5g0434901 52.113 71 34 0 51 121 4 74 1.36e-19 82.0
Msa0009330 MtrunA17_Chr7g0254261 44.898 98 51 2 22 118 89 184 2.60e-19 86.3
Msa0009330 MtrunA17_Chr6g0460671 37.607 117 63 3 8 123 92 199 3.41e-19 85.9
Msa0009330 MtrunA17_Chr7g0228481 42.105 95 53 2 22 116 220 312 1.09e-17 82.0
Msa0009330 MtrunA17_Chr1g0177901 41.379 87 50 1 32 118 4 89 1.75e-17 78.6
Msa0009330 MtrunA17_Chr7g0233061 38.000 100 53 3 22 118 180 273 3.08e-17 80.1
Msa0009330 MtrunA17_Chr8g0362231 38.532 109 66 1 25 133 25 132 7.25e-17 79.7
Msa0009330 MtrunA17_Chr7g0228401 41.379 87 48 2 33 118 290 374 4.93e-16 77.4
Msa0009330 MtrunA17_Chr5g0416341 37.037 108 67 1 25 132 29 135 8.71e-16 76.6
Msa0009330 MtrunA17_Chr1g0193901 47.059 85 43 2 19 101 10 94 8.38e-15 68.9
Msa0009330 MtrunA17_Chr1g0193891 47.059 85 43 2 19 101 10 94 8.38e-15 68.9
Msa0009330 MtrunA17_Chr1g0193871 47.059 85 43 2 19 101 10 94 8.38e-15 68.9
Msa0009330 MtrunA17_Chr1g0193881 47.059 85 43 2 19 101 10 94 8.38e-15 68.9
Msa0009330 MtrunA17_Chr5g0434871 58.140 43 18 0 82 124 2 44 1.13e-11 59.3
Msa0009330 MtrunA17_Chr5g0395231 32.609 138 76 4 96 233 15 135 1.89e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0009330 AT3G24310.1 55.253 257 104 5 17 264 15 269 2.95e-83 250
Msa0009330 AT4G13480.1 52.416 269 101 6 15 264 1 261 5.00e-81 244
Msa0009330 AT3G30210.1 51.802 222 82 6 21 239 28 227 7.64e-63 199
Msa0009330 AT3G27810.1 67.619 105 34 0 21 125 21 125 1.62e-51 168
Msa0009330 AT1G48000.1 70.476 105 31 0 21 125 33 137 1.43e-50 166
Msa0009330 AT5G40350.1 67.308 104 34 0 21 124 18 121 2.26e-50 165
Msa0009330 AT3G01530.1 60.526 114 45 0 16 129 21 134 3.16e-49 161
Msa0009330 AT5G59780.3 64.220 109 39 0 15 123 3 111 3.62e-49 162
Msa0009330 AT3G46130.1 64.545 110 39 0 14 123 3 112 5.85e-49 162
Msa0009330 AT1G68320.1 64.762 105 37 0 21 125 20 124 2.08e-48 162
Msa0009330 AT2G47190.1 61.261 111 43 0 16 126 16 126 1.56e-47 159
Msa0009330 AT2G16720.1 52.482 141 65 1 14 154 6 144 2.58e-47 159
Msa0009330 AT1G25340.1 62.857 105 39 0 21 125 19 123 4.32e-47 158
Msa0009330 AT4G09460.1 39.320 206 109 3 14 219 6 195 5.20e-46 154
Msa0009330 AT1G22640.1 64.078 103 37 0 22 124 14 116 6.53e-46 154
Msa0009330 AT4G34990.1 62.162 111 42 0 14 124 6 116 1.98e-45 154
Msa0009330 AT1G35515.1 60.177 113 45 0 14 126 6 118 1.98e-45 152
Msa0009330 AT5G26660.1 61.062 113 44 0 13 125 5 117 2.12e-45 156
Msa0009330 AT5G16770.4 58.716 109 45 0 16 124 8 116 3.36e-45 155
Msa0009330 AT5G16770.3 58.716 109 45 0 16 124 8 116 3.36e-45 155
Msa0009330 AT5G10280.1 57.658 111 47 0 14 124 6 116 3.52e-45 155
Msa0009330 AT5G16770.1 58.716 109 45 0 16 124 8 116 5.89e-45 154
Msa0009330 AT5G16770.2 58.716 109 45 0 16 124 8 116 5.89e-45 154
Msa0009330 AT5G65230.1 59.633 109 44 0 16 124 8 116 7.79e-45 153
Msa0009330 AT3G53200.1 61.682 107 41 0 17 123 6 112 7.84e-45 151
Msa0009330 AT4G38620.1 58.407 113 47 0 14 126 6 118 9.33e-45 152
Msa0009330 AT5G49620.1 66.964 112 37 0 14 125 20 131 9.86e-45 153
Msa0009330 AT5G14750.1 57.944 107 45 0 18 124 14 120 1.05e-44 150
Msa0009330 AT3G13540.1 62.500 104 39 0 21 124 24 127 1.27e-44 151
Msa0009330 AT4G21440.1 57.798 109 46 0 16 124 8 116 1.57e-44 154
Msa0009330 AT1G06180.1 58.716 109 45 0 21 129 13 121 2.14e-44 150
Msa0009330 AT5G54230.1 61.538 104 40 0 21 124 13 116 2.76e-44 152
Msa0009330 AT2G32460.1 58.772 114 47 0 10 123 8 121 3.07e-44 156
Msa0009330 AT5G07690.1 63.725 102 37 0 21 122 13 114 3.20e-44 152
Msa0009330 AT3G02940.2 58.716 109 45 0 16 124 8 116 3.74e-44 152
Msa0009330 AT5G15310.4 62.500 104 39 0 21 124 13 116 4.17e-44 149
Msa0009330 AT3G61250.1 59.615 104 42 0 21 124 13 116 4.23e-44 151
Msa0009330 AT3G01140.2 63.462 104 38 0 21 124 13 116 4.47e-44 152
Msa0009330 AT3G06490.1 67.619 105 34 0 21 125 20 124 4.85e-44 152
Msa0009330 AT5G07700.1 61.538 104 40 0 21 124 13 116 5.76e-44 152
Msa0009330 AT5G07700.2 61.538 104 40 0 21 124 13 116 5.76e-44 152
Msa0009330 AT1G18570.1 50.704 142 69 1 21 161 14 155 6.33e-44 152
Msa0009330 AT5G40330.1 55.963 109 48 0 16 124 8 116 6.48e-44 148
Msa0009330 AT3G02940.1 58.716 109 45 0 16 124 8 116 6.58e-44 151
Msa0009330 AT3G02940.3 58.716 109 45 0 16 124 8 116 6.58e-44 151
Msa0009330 AT1G34670.1 58.716 109 45 0 16 124 8 116 7.92e-44 152
Msa0009330 AT4G12350.1 62.500 104 39 0 21 124 13 116 8.15e-44 150
Msa0009330 AT5G61420.2 61.538 104 40 0 21 124 13 116 8.18e-44 152
Msa0009330 AT3G01140.1 63.462 104 38 0 21 124 56 159 8.99e-44 152
Msa0009330 AT5G15310.1 62.500 104 39 0 21 124 13 116 1.12e-43 151
Msa0009330 AT4G28110.1 58.654 104 43 0 21 124 13 116 1.28e-43 149
Msa0009330 AT3G47600.1 55.462 119 53 0 21 139 13 131 1.36e-43 150
Msa0009330 AT5G15310.2 62.500 104 39 0 21 124 13 116 1.45e-43 150
Msa0009330 AT3G11440.2 62.136 103 39 0 21 123 42 144 2.10e-43 153
Msa0009330 AT1G57560.2 58.929 112 46 0 13 124 5 116 2.84e-43 148
Msa0009330 AT4G22680.1 61.538 104 40 0 21 124 13 116 3.52e-43 148
Msa0009330 AT3G27920.1 53.782 119 55 0 16 134 10 128 3.76e-43 147
Msa0009330 AT1G57560.1 58.929 112 46 0 13 124 5 116 4.21e-43 149
Msa0009330 AT1G66230.1 48.252 143 73 1 21 162 13 155 4.39e-43 148
Msa0009330 AT2G32460.2 62.136 103 39 0 21 123 7 109 4.56e-43 152
Msa0009330 AT1G09540.1 59.292 113 46 0 13 125 5 117 4.99e-43 150
Msa0009330 AT3G23250.1 52.991 117 55 0 21 137 13 129 5.86e-43 148
Msa0009330 AT5G16600.1 44.970 169 73 2 21 169 13 181 6.16e-43 149
Msa0009330 AT4G05100.1 59.615 104 42 0 21 124 14 117 6.32e-43 149
Msa0009330 AT5G62470.2 48.026 152 68 2 21 161 13 164 7.89e-43 149
Msa0009330 AT5G06100.1 62.136 103 39 0 21 123 33 135 8.52e-43 151
Msa0009330 AT3G11440.3 62.136 103 39 0 21 123 42 144 1.03e-42 153
Msa0009330 AT3G11440.4 62.136 103 39 0 21 123 42 144 1.03e-42 153
Msa0009330 AT3G11440.1 62.136 103 39 0 21 123 42 144 1.03e-42 153
Msa0009330 AT1G25340.2 60.000 105 37 1 21 125 19 118 2.05e-42 146
Msa0009330 AT4G01680.3 58.407 113 47 0 13 125 5 117 2.50e-42 145
Msa0009330 AT2G31180.1 59.615 104 42 0 21 124 13 116 2.66e-42 145
Msa0009330 AT5G06100.5 62.136 103 39 0 21 123 33 135 2.93e-42 151
Msa0009330 AT5G06100.2 62.136 103 39 0 21 123 33 135 2.93e-42 151
Msa0009330 AT5G06100.3 62.136 103 39 0 21 123 33 135 2.93e-42 151
Msa0009330 AT5G06100.4 62.136 103 39 0 21 123 33 135 2.93e-42 151
Msa0009330 AT1G25340.3 60.000 105 37 1 21 125 19 118 4.36e-42 146
Msa0009330 AT3G62610.1 59.615 104 42 0 21 124 13 116 5.50e-42 147
Msa0009330 AT4G17785.2 60.577 104 41 0 21 124 14 117 7.76e-42 147
Msa0009330 AT4G01680.1 58.407 113 47 0 13 125 5 117 8.16e-42 146
Msa0009330 AT5G60890.1 57.273 110 47 0 16 125 8 117 8.21e-42 145
Msa0009330 AT4G17785.1 60.577 104 41 0 21 124 14 117 8.84e-42 147
Msa0009330 AT1G74080.1 62.745 102 38 0 21 122 13 114 1.08e-41 146
Msa0009330 AT5G49330.1 61.538 104 40 0 21 124 13 116 1.32e-41 146
Msa0009330 AT2G26960.1 62.136 103 39 0 20 122 20 122 1.53e-41 147
Msa0009330 AT3G13890.2 54.464 112 51 0 13 124 5 116 1.56e-41 146
Msa0009330 AT1G08810.1 53.279 122 56 1 21 142 13 133 1.77e-41 144
Msa0009330 AT5G62320.1 58.559 111 39 1 21 124 14 124 1.81e-41 143
Msa0009330 AT2G47460.1 58.491 106 44 0 21 126 13 118 3.20e-41 145
Msa0009330 AT1G74650.1 60.577 104 41 0 21 124 13 116 4.42e-41 144
Msa0009330 AT5G49620.2 59.524 126 37 1 14 125 20 145 5.33e-41 144
Msa0009330 AT1G79180.1 53.509 114 53 0 21 134 15 128 1.48e-40 142
Msa0009330 AT5G62470.1 47.368 152 68 3 21 161 13 163 2.51e-40 142
Msa0009330 AT1G56160.1 52.252 111 53 0 14 124 8 118 3.07e-40 141
Msa0009330 AT5G55020.1 58.095 105 44 0 21 125 27 131 3.84e-40 145
Msa0009330 AT1G63910.1 53.913 115 53 0 13 127 5 119 4.45e-40 142
Msa0009330 AT5G12870.1 53.390 118 55 0 13 130 11 128 4.83e-40 140
Msa0009330 AT5G52600.1 58.252 103 43 0 21 123 13 115 4.89e-40 138
Msa0009330 AT3G12720.1 54.808 104 47 0 21 124 23 126 6.71e-40 140
Msa0009330 AT3G48920.1 57.407 108 46 0 17 124 15 122 8.63e-40 139
Msa0009330 AT3G08500.1 57.944 107 45 0 19 125 29 135 8.64e-40 141
Msa0009330 AT1G74430.1 52.991 117 53 1 8 124 2 116 1.22e-39 139
Msa0009330 AT1G16490.1 47.656 128 65 1 21 146 15 142 2.90e-39 138
Msa0009330 AT3G28910.1 57.692 104 44 0 21 124 13 116 3.13e-39 139
Msa0009330 AT4G25560.1 57.547 106 45 0 18 123 8 113 7.77e-39 137
Msa0009330 AT4G26930.1 48.227 141 66 2 21 159 20 155 7.90e-39 139
Msa0009330 AT5G56110.1 56.881 109 47 0 16 124 8 116 9.58e-39 138
Msa0009330 AT5G35550.1 36.574 216 118 5 22 227 16 222 1.02e-38 136
Msa0009330 AT4G01680.2 52.800 125 47 1 13 125 5 129 1.04e-38 138
Msa0009330 AT3G13890.1 50.413 121 51 1 13 124 5 125 1.51e-38 138
Msa0009330 AT5G14340.1 58.491 106 44 0 21 126 25 130 1.85e-38 136
Msa0009330 AT3G12820.1 50.427 117 58 0 8 124 2 118 2.24e-38 134
Msa0009330 AT4G37780.1 44.218 147 74 2 21 166 13 152 1.05e-37 135
Msa0009330 AT5G52260.1 58.095 105 44 0 19 123 11 115 2.48e-37 133
Msa0009330 AT3G28470.1 58.163 98 41 0 21 118 13 110 1.39e-36 132
Msa0009330 AT5G23000.1 51.786 112 53 1 14 124 6 117 6.45e-36 130
Msa0009330 AT5G65790.1 45.324 139 63 2 21 158 13 139 1.29e-35 130
Msa0009330 AT3G46130.3 76.389 72 17 0 52 123 9 80 1.68e-35 127
Msa0009330 AT5G59780.2 77.465 71 16 0 53 123 20 90 2.25e-35 126
Msa0009330 AT3G46130.4 77.465 71 16 0 53 123 20 90 4.20e-35 126
Msa0009330 AT3G49690.1 54.206 107 48 1 21 126 13 119 4.53e-35 128
Msa0009330 AT3G27810.2 71.233 73 21 0 53 125 4 76 4.93e-35 124
Msa0009330 AT1G66370.1 54.369 103 47 0 21 123 9 111 6.26e-35 126
Msa0009330 AT5G57620.1 54.286 105 47 1 21 124 13 117 7.51e-35 128
Msa0009330 AT2G36890.1 54.286 105 47 1 21 124 13 117 1.13e-34 127
Msa0009330 AT1G18710.1 48.718 117 58 1 8 124 2 116 1.92e-34 125
Msa0009330 AT2G36890.2 54.286 105 47 1 21 124 54 158 2.46e-34 127
Msa0009330 AT1G79180.2 41.497 147 53 1 21 134 15 161 3.96e-34 126
Msa0009330 AT3G53200.2 73.239 71 19 0 53 123 9 79 7.26e-34 122
Msa0009330 AT5G40350.2 69.444 72 22 0 53 124 5 76 2.67e-33 119
Msa0009330 AT1G66380.1 55.340 103 46 0 21 123 9 111 4.87e-32 115
Msa0009330 AT1G56650.1 55.340 103 46 0 21 123 9 111 5.89e-32 118
Msa0009330 AT2G26950.1 52.577 97 46 0 20 116 16 112 1.23e-31 120
Msa0009330 AT3G60460.1 50.485 103 50 1 21 122 12 114 1.94e-31 118
Msa0009330 AT1G66390.1 55.340 103 46 0 21 123 9 111 2.36e-31 117
Msa0009330 AT5G26660.2 69.863 73 22 0 53 125 14 86 2.59e-31 118
Msa0009330 AT3G47600.2 59.524 84 34 0 53 136 39 122 4.52e-29 112
Msa0009330 AT5G58850.1 34.008 247 140 8 22 260 105 336 2.66e-28 112
Msa0009330 AT2G23290.1 48.696 115 55 3 10 123 2 113 3.42e-28 110
Msa0009330 AT4G37260.1 41.985 131 71 3 22 149 13 141 4.66e-28 109
Msa0009330 AT5G14750.3 62.319 69 26 0 56 124 18 86 1.69e-27 104
Msa0009330 AT3G12820.2 63.768 69 25 0 56 124 2 70 2.66e-27 104
Msa0009330 AT3G09230.1 46.552 116 55 3 22 136 55 164 4.43e-27 108
Msa0009330 AT3G27785.1 53.125 96 42 2 22 116 189 282 8.25e-27 108
Msa0009330 AT5G02320.1 48.077 104 51 2 22 124 127 228 1.46e-26 108
Msa0009330 AT5G02320.1 37.037 108 66 2 19 125 72 178 7.55e-14 71.2
Msa0009330 AT5G02320.2 48.077 104 51 2 22 124 127 228 1.46e-26 108
Msa0009330 AT5G02320.2 37.037 108 66 2 19 125 72 178 7.55e-14 71.2
Msa0009330 AT5G35550.2 34.211 190 106 5 48 227 45 225 1.82e-26 104
Msa0009330 AT5G02320.3 48.077 104 51 2 22 124 67 168 1.86e-26 107
Msa0009330 AT5G02320.3 37.037 108 66 2 19 125 12 118 9.92e-14 70.9
Msa0009330 AT2G39880.1 49.515 103 49 2 22 123 50 150 2.47e-26 105
Msa0009330 AT5G11510.5 34.868 152 90 3 22 172 81 224 4.97e-26 107
Msa0009330 AT5G11510.5 34.579 107 68 2 19 124 26 131 1.02e-12 68.2
Msa0009330 AT5G11510.3 34.868 152 90 3 22 172 81 224 5.50e-26 107
Msa0009330 AT5G11510.3 34.579 107 68 2 19 124 26 131 1.27e-12 68.2
Msa0009330 AT5G11510.1 34.868 152 90 3 22 172 81 224 5.50e-26 107
Msa0009330 AT5G11510.1 34.579 107 68 2 19 124 26 131 1.27e-12 68.2
Msa0009330 AT5G11510.4 34.868 152 90 3 22 172 81 224 5.50e-26 107
Msa0009330 AT5G11510.4 34.579 107 68 2 19 124 26 131 1.27e-12 68.2
Msa0009330 AT5G11510.2 34.868 152 90 3 22 172 81 224 5.79e-26 107
Msa0009330 AT5G11510.2 34.579 107 68 2 19 124 26 131 1.13e-12 68.2
Msa0009330 AT5G11050.1 51.042 96 44 2 22 116 105 198 1.08e-25 105
Msa0009330 AT3G09370.2 47.573 103 51 2 22 123 135 235 1.49e-25 105
Msa0009330 AT3G09370.2 36.449 107 66 2 19 124 80 185 4.67e-12 65.9
Msa0009330 AT3G09370.1 47.573 103 51 2 22 123 130 230 1.78e-25 105
Msa0009330 AT3G09370.1 36.449 107 66 2 19 124 75 180 5.96e-12 65.9
Msa0009330 AT4G18770.1 42.735 117 60 3 12 123 207 321 1.99e-25 104
Msa0009330 AT3G09370.3 47.573 103 51 2 22 123 143 243 2.03e-25 105
Msa0009330 AT3G09370.3 36.449 107 66 2 19 124 88 193 4.33e-12 66.2
Msa0009330 AT3G55730.1 45.631 103 53 2 22 123 56 156 2.87e-25 103
Msa0009330 AT3G50060.1 44.660 103 54 2 22 123 6 106 1.32e-24 100
Msa0009330 AT4G32730.5 44.231 104 55 2 22 124 87 188 4.75e-24 101
Msa0009330 AT4G32730.5 31.148 122 82 2 4 124 17 137 6.76e-13 68.9
Msa0009330 AT4G32730.4 44.231 104 55 2 22 124 87 188 4.75e-24 101
Msa0009330 AT4G32730.4 31.148 122 82 2 4 124 17 137 6.76e-13 68.9
Msa0009330 AT4G32730.3 44.231 104 55 2 22 124 87 188 4.75e-24 101
Msa0009330 AT4G32730.3 31.148 122 82 2 4 124 17 137 6.76e-13 68.9
Msa0009330 AT4G32730.2 44.231 104 55 2 22 124 87 188 4.75e-24 101
Msa0009330 AT4G32730.2 31.148 122 82 2 4 124 17 137 6.76e-13 68.9
Msa0009330 AT5G67300.1 45.631 103 53 2 22 123 6 106 4.97e-24 98.6
Msa0009330 AT4G32730.1 44.231 104 55 2 22 124 87 188 5.11e-24 101
Msa0009330 AT4G32730.1 31.148 122 82 2 4 124 17 137 6.01e-13 68.9
Msa0009330 AT1G17950.1 48.958 96 46 2 22 116 5 98 9.13e-24 96.7
Msa0009330 AT5G40360.1 45.263 95 51 1 22 116 158 251 4.03e-23 97.1
Msa0009330 AT1G69560.1 40.000 115 66 2 22 135 107 219 1.69e-22 95.1
Msa0009330 AT1G69560.2 40.000 115 66 2 22 135 123 235 1.73e-22 95.1
Msa0009330 AT1G26780.1 40.870 115 65 2 22 135 98 210 3.12e-22 93.2
Msa0009330 AT1G26780.2 40.870 115 65 2 22 135 98 210 5.52e-22 94.0
Msa0009330 AT1G73410.1 46.939 98 49 2 22 118 6 101 7.54e-22 91.7
Msa0009330 AT3G23250.2 54.167 72 33 0 66 137 1 72 7.98e-22 91.3
Msa0009330 AT1G73410.2 46.939 98 49 2 22 118 6 101 1.04e-21 90.1
Msa0009330 AT5G17800.1 43.269 104 58 1 22 125 93 195 1.13e-21 92.4
Msa0009330 AT1G22640.3 62.712 59 22 0 66 124 1 59 1.23e-21 90.1
Msa0009330 AT4G33450.1 42.017 119 65 3 22 138 19 135 3.08e-21 90.1
Msa0009330 AT1G66380.3 54.545 77 35 0 47 123 2 78 9.87e-21 84.7
Msa0009330 AT5G14750.4 57.627 59 25 0 66 124 1 59 2.53e-20 84.7
Msa0009330 AT5G14750.2 57.627 59 25 0 66 124 1 59 2.53e-20 84.7
Msa0009330 AT3G29020.1 39.091 110 64 2 22 130 65 172 3.22e-20 87.0
Msa0009330 AT5G59780.1 78.261 46 10 0 78 123 1 46 3.75e-20 85.1
Msa0009330 AT3G46130.2 78.261 46 10 0 78 123 1 46 8.34e-20 84.7
Msa0009330 AT3G29020.2 39.091 110 64 2 22 130 67 174 1.07e-19 87.0
Msa0009330 AT2G37630.1 42.574 101 55 2 25 123 7 106 1.34e-19 87.4
Msa0009330 AT1G71030.1 46.914 81 42 1 44 124 5 84 5.21e-19 82.8
Msa0009330 AT1G71030.2 53.030 66 31 0 59 124 5 70 6.19e-19 82.4
Msa0009330 AT4G00540.2 44.444 108 54 3 22 125 103 208 6.66e-19 85.9
Msa0009330 AT4G00540.1 44.444 108 54 3 22 125 101 206 1.25e-18 85.1
Msa0009330 AT2G25230.1 40.777 103 57 3 25 126 29 128 2.46e-18 82.0
Msa0009330 AT1G66380.2 48.750 80 41 0 21 100 9 88 2.55e-18 78.6
Msa0009330 AT1G18960.1 38.679 106 56 3 22 124 10 109 8.55e-18 81.6
Msa0009330 AT1G14350.2 35.897 117 72 2 25 141 28 141 1.14e-15 76.6
Msa0009330 AT1G14350.1 35.897 117 72 2 25 141 28 141 1.14e-15 76.6
Msa0009330 AT2G02820.3 34.259 108 70 1 25 132 33 139 5.97e-15 73.9
Msa0009330 AT2G02820.1 36.036 111 64 2 25 132 33 139 8.82e-15 73.9
Msa0009330 AT2G02820.2 36.036 111 64 2 25 132 33 139 1.01e-14 73.9
Msa0009330 AT5G39700.1 36.364 110 69 1 21 130 55 163 1.10e-14 70.9
Msa0009330 AT5G40430.1 35.156 128 77 5 2 128 35 157 3.86e-14 70.9
Msa0009330 AT4G25560.2 63.043 46 17 0 78 123 2 47 4.96e-14 69.7
Msa0009330 AT5G61420.1 72.222 36 10 0 89 124 2 37 1.46e-11 63.5
Msa0009330 AT3G18100.4 30.769 130 80 3 2 124 360 486 1.56e-11 64.7
Msa0009330 AT3G18100.2 30.769 130 80 3 2 124 308 434 1.69e-11 64.3
Msa0009330 AT3G18100.3 30.769 130 80 3 2 124 473 599 1.76e-11 64.7
Msa0009330 AT3G18100.1 30.769 130 80 3 2 124 521 647 1.90e-11 64.3

Find 56 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTCTTTCATTATGTATTC+AGG 0.237061 1_1:-13616585 None:intergenic
CCTTCTTAAGGTCTGGTCTT+AGG 0.259563 1_1:+13616234 None:intergenic
AACTCTGTCTCTAGGCTTGC+AGG 0.297134 1_1:-13616438 Msa0009330:intron
GTGTTATCTGACCCTTCTTA+AGG 0.320325 1_1:+13616222 None:intergenic
ATCTCATTGTCAGTTCTTCC+CGG 0.346112 1_1:+13615997 None:intergenic
TTTGCAGGACTGAGAAGAAA+TGG 0.356634 1_1:-13616287 Msa0009330:intron
TGCTGATACACAAGTACAAC+AGG 0.369003 1_1:-13615716 Msa0009330:CDS
GTGTAATGGAAGAAGATAGA+TGG 0.371974 1_1:-13616536 Msa0009330:CDS
ATCTGACCCTTCTTAAGGTC+TGG 0.379207 1_1:+13616227 None:intergenic
AACAATTGCGAGAAGCTTGC+CGG 0.379879 1_1:-13616016 Msa0009330:CDS
CCCCTCTGATGCTGCTGAAA+AGG 0.386654 1_1:-13615932 Msa0009330:CDS
AGAATTTGTGGGATGGACTT+TGG 0.395443 1_1:-13615627 Msa0009330:CDS
TGGAACTTGGATGATGCTCT+TGG 0.418349 1_1:-13615607 Msa0009330:CDS
ACAATGAGATAAAGAACTAT+TGG 0.425896 1_1:-13615984 Msa0009330:CDS
TACATGCTAGGTGGGGAAAC+AGG 0.437338 1_1:-13616172 Msa0009330:intron
TTCTCAAGAGACACAAGAAA+TGG 0.446329 1_1:-13615749 Msa0009330:CDS
ACTACATTGTGCACATTGGC+TGG 0.456615 1_1:+13615553 None:intergenic
TTGCAGGACTGAGAAGAAAT+GGG 0.458286 1_1:-13616286 Msa0009330:intron
CTTCAAATGAAGAGAATTTG+TGG 0.464547 1_1:-13615639 Msa0009330:CDS
CATTATGTATTCAGGAATGA+TGG 0.464772 1_1:-13616577 None:intergenic
GTGGGATGGACTTTGGAACT+TGG 0.492651 1_1:-13615620 Msa0009330:CDS
TGTGTCTCTTGAGAAGTAGA+AGG 0.496024 1_1:+13615757 None:intergenic
CCTAGAGCTACATGCTAGGT+GGG 0.498599 1_1:-13616180 Msa0009330:CDS
ACAATTGCGAGAAGCTTGCC+GGG 0.500170 1_1:-13616015 Msa0009330:CDS
AATACAACATGGACATGAAA+GGG 0.511886 1_1:-13615825 Msa0009330:CDS
ATGAGATAAAGAACTATTGG+AGG 0.513857 1_1:-13615981 Msa0009330:CDS
TTCAAATGAAGAGAATTTGT+GGG 0.514100 1_1:-13615638 Msa0009330:CDS
TACTTGTGTATCAGCATACA+TGG 0.517091 1_1:+13615723 None:intergenic
AGCAGCATGGTGAAGGCAGA+TGG 0.518000 1_1:-13616461 Msa0009330:CDS
CCCACCTAGCATGTAGCTCT+AGG 0.519377 1_1:+13616180 None:intergenic
CAATACAACATGGACATGAA+AGG 0.522848 1_1:-13615826 Msa0009330:CDS
CCTAAGACCAGACCTTAAGA+AGG 0.523078 1_1:-13616234 Msa0009330:CDS
TCTATGCTCAATGATAATAG+TGG 0.536144 1_1:-13615682 Msa0009330:CDS
GGAAAAGTTGTAGATTGAGA+TGG 0.549086 1_1:-13616265 Msa0009330:CDS
TATGTCAAGCAGCATGGTGA+AGG 0.550639 1_1:-13616468 Msa0009330:CDS
GCAGATGGAACTCTGTCTCT+AGG 0.556467 1_1:-13616446 Msa0009330:CDS
GAAAAGTTGTAGATTGAGAT+GGG 0.559168 1_1:-13616264 Msa0009330:CDS
ATAGATGGAGGAAAGGACCT+TGG 0.564310 1_1:-13616521 Msa0009330:CDS
GAAGAAGATAGATGGAGGAA+AGG 0.569212 1_1:-13616528 Msa0009330:CDS
GGAATGATGGAAGGAAACAC+TGG 0.575742 1_1:-13616564 Msa0009330:CDS
AATGAAGAGAATTTGTGGGA+TGG 0.584872 1_1:-13615634 Msa0009330:CDS
AAACACTGGATGGAGTGTAA+TGG 0.585481 1_1:-13616550 Msa0009330:CDS
GAAAGGACCTTGGACTTCTG+AGG 0.594052 1_1:-13616511 Msa0009330:CDS
GATCATAGACTTGTTGCTTG+AGG 0.595685 1_1:-13615803 Msa0009330:CDS
TAATGGAAGAAGATAGATGG+AGG 0.601607 1_1:-13616533 Msa0009330:CDS
TTGTCTTCCTCAGAAGTCCA+AGG 0.607855 1_1:+13616504 None:intergenic
ATGTATTCAGGAATGATGGA+AGG 0.614007 1_1:-13616573 Msa0009330:CDS
TGATGGAAGGAAACACTGGA+TGG 0.616620 1_1:-13616560 Msa0009330:CDS
ATTGAGTATGTCAAGCAGCA+TGG 0.618335 1_1:-13616474 Msa0009330:CDS
TCCTAGAGCTACATGCTAGG+TGG 0.619467 1_1:-13616181 Msa0009330:CDS
TAATCCTAGAGCTACATGCT+AGG 0.625705 1_1:-13616184 Msa0009330:CDS
CTAAGACCAGACCTTAAGAA+GGG 0.632926 1_1:-13616233 Msa0009330:CDS
AGTAACTACATTGTGCACAT+TGG 0.642977 1_1:+13615549 None:intergenic
CTAGAGCTACATGCTAGGTG+GGG 0.652296 1_1:-13616179 Msa0009330:CDS
ACAACAACTACAATACAACA+TGG 0.686703 1_1:-13615836 Msa0009330:CDS
GCTGATACACAAGTACAACA+GGG 0.770070 1_1:-13615715 Msa0009330:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAATATATGATCAATA+AGG + chr1_1:13615805-13615824 None:intergenic 10.0%
!! AAAATAATATATGATCAATA+AGG + chr1_1:13615805-13615824 None:intergenic 10.0%
!! AATTGGTATTAATTAAACTA+AGG + chr1_1:13615770-13615789 None:intergenic 15.0%
!! TACTAAATAAAAAACATTTC+AGG - chr1_1:13616066-13616085 Msa0009330:intron 15.0%
!! AATTGGTATTAATTAAACTA+AGG + chr1_1:13615770-13615789 None:intergenic 15.0%
!! TACTAAATAAAAAACATTTC+AGG - chr1_1:13616066-13616085 Msa0009330:intron 15.0%
!! CAAAAAATGTGTATAAAGTT+TGG + chr1_1:13615718-13615737 None:intergenic 20.0%
!!! TGATCATATATTATTTTTGC+AGG - chr1_1:13615808-13615827 Msa0009330:CDS 20.0%
!! TAAATAAAAAACATTTCAGG+TGG - chr1_1:13616069-13616088 Msa0009330:intron 20.0%
!! CAAAAAATGTGTATAAAGTT+TGG + chr1_1:13615718-13615737 None:intergenic 20.0%
!!! TGATCATATATTATTTTTGC+AGG - chr1_1:13615808-13615827 Msa0009330:CDS 20.0%
!! TAAATAAAAAACATTTCAGG+TGG - chr1_1:13616069-13616088 Msa0009330:intron 20.0%
! TAAGGAGTTAAGAATTCAAT+TGG + chr1_1:13615787-13615806 None:intergenic 25.0%
! ACAATGAGATAAAGAACTAT+TGG - chr1_1:13616126-13616145 Msa0009330:intron 25.0%
! TTCAAATGAAGAGAATTTGT+GGG - chr1_1:13616472-13616491 Msa0009330:CDS 25.0%
! TAAGGAGTTAAGAATTCAAT+TGG + chr1_1:13615787-13615806 None:intergenic 25.0%
! ACAATGAGATAAAGAACTAT+TGG - chr1_1:13616126-13616145 Msa0009330:intron 25.0%
! TTCAAATGAAGAGAATTTGT+GGG - chr1_1:13616472-13616491 Msa0009330:CDS 25.0%
! AAGGTACAAAGTACTATGTT+AGG + chr1_1:13615751-13615770 None:intergenic 30.0%
GAAAAGTTGTAGATTGAGAT+GGG - chr1_1:13615846-13615865 Msa0009330:CDS 30.0%
! CTTGATAAAGTGTCTAATAC+TGG + chr1_1:13616001-13616020 None:intergenic 30.0%
ATGAGATAAAGAACTATTGG+AGG - chr1_1:13616129-13616148 Msa0009330:intron 30.0%
ACAACAACTACAATACAACA+TGG - chr1_1:13616274-13616293 Msa0009330:CDS 30.0%
AATACAACATGGACATGAAA+GGG - chr1_1:13616285-13616304 Msa0009330:intron 30.0%
TCTATGCTCAATGATAATAG+TGG - chr1_1:13616428-13616447 Msa0009330:intron 30.0%
CTTCAAATGAAGAGAATTTG+TGG - chr1_1:13616471-13616490 Msa0009330:CDS 30.0%
! AAGGTACAAAGTACTATGTT+AGG + chr1_1:13615751-13615770 None:intergenic 30.0%
GAAAAGTTGTAGATTGAGAT+GGG - chr1_1:13615846-13615865 Msa0009330:CDS 30.0%
! CTTGATAAAGTGTCTAATAC+TGG + chr1_1:13616001-13616020 None:intergenic 30.0%
ATGAGATAAAGAACTATTGG+AGG - chr1_1:13616129-13616148 Msa0009330:intron 30.0%
ACAACAACTACAATACAACA+TGG - chr1_1:13616274-13616293 Msa0009330:CDS 30.0%
AATACAACATGGACATGAAA+GGG - chr1_1:13616285-13616304 Msa0009330:intron 30.0%
TCTATGCTCAATGATAATAG+TGG - chr1_1:13616428-13616447 Msa0009330:intron 30.0%
CTTCAAATGAAGAGAATTTG+TGG - chr1_1:13616471-13616490 Msa0009330:CDS 30.0%
! ATGTATTCAGGAATGATGGA+AGG - chr1_1:13615537-13615556 Msa0009330:CDS 35.0%
! GTGTAATGGAAGAAGATAGA+TGG - chr1_1:13615574-13615593 Msa0009330:CDS 35.0%
TAATGGAAGAAGATAGATGG+AGG - chr1_1:13615577-13615596 Msa0009330:CDS 35.0%
GGAAAAGTTGTAGATTGAGA+TGG - chr1_1:13615845-13615864 Msa0009330:CDS 35.0%
CGAAAAATCGTTCTTTCAAG+AGG - chr1_1:13616201-13616220 Msa0009330:CDS 35.0%
CAATACAACATGGACATGAA+AGG - chr1_1:13616284-13616303 Msa0009330:intron 35.0%
TTCTCAAGAGACACAAGAAA+TGG - chr1_1:13616361-13616380 Msa0009330:intron 35.0%
TACTTGTGTATCAGCATACA+TGG + chr1_1:13616390-13616409 None:intergenic 35.0%
AATGAAGAGAATTTGTGGGA+TGG - chr1_1:13616476-13616495 Msa0009330:CDS 35.0%
AGTAACTACATTGTGCACAT+TGG + chr1_1:13616564-13616583 None:intergenic 35.0%
! ATGTATTCAGGAATGATGGA+AGG - chr1_1:13615537-13615556 Msa0009330:CDS 35.0%
! GTGTAATGGAAGAAGATAGA+TGG - chr1_1:13615574-13615593 Msa0009330:CDS 35.0%
TAATGGAAGAAGATAGATGG+AGG - chr1_1:13615577-13615596 Msa0009330:CDS 35.0%
GGAAAAGTTGTAGATTGAGA+TGG - chr1_1:13615845-13615864 Msa0009330:CDS 35.0%
CGAAAAATCGTTCTTTCAAG+AGG - chr1_1:13616201-13616220 Msa0009330:CDS 35.0%
CAATACAACATGGACATGAA+AGG - chr1_1:13616284-13616303 Msa0009330:intron 35.0%
TTCTCAAGAGACACAAGAAA+TGG - chr1_1:13616361-13616380 Msa0009330:intron 35.0%
TACTTGTGTATCAGCATACA+TGG + chr1_1:13616390-13616409 None:intergenic 35.0%
AATGAAGAGAATTTGTGGGA+TGG - chr1_1:13616476-13616495 Msa0009330:CDS 35.0%
AGTAACTACATTGTGCACAT+TGG + chr1_1:13616564-13616583 None:intergenic 35.0%
AAACACTGGATGGAGTGTAA+TGG - chr1_1:13615560-13615579 Msa0009330:CDS 40.0%
GAAGAAGATAGATGGAGGAA+AGG - chr1_1:13615582-13615601 Msa0009330:CDS 40.0%
ATTGAGTATGTCAAGCAGCA+TGG - chr1_1:13615636-13615655 Msa0009330:CDS 40.0%
TTTGCAGGACTGAGAAGAAA+TGG - chr1_1:13615823-13615842 Msa0009330:CDS 40.0%
TTGCAGGACTGAGAAGAAAT+GGG - chr1_1:13615824-13615843 Msa0009330:CDS 40.0%
CTAAGACCAGACCTTAAGAA+GGG - chr1_1:13615877-13615896 Msa0009330:CDS 40.0%
GTGTTATCTGACCCTTCTTA+AGG + chr1_1:13615891-13615910 None:intergenic 40.0%
TAATCCTAGAGCTACATGCT+AGG - chr1_1:13615926-13615945 Msa0009330:CDS 40.0%
CTGGAAACGCGTAATTTCAA+CGG + chr1_1:13615982-13616001 None:intergenic 40.0%
ATCTCATTGTCAGTTCTTCC+CGG + chr1_1:13616116-13616135 None:intergenic 40.0%
!! GATCATAGACTTGTTGCTTG+AGG - chr1_1:13616307-13616326 Msa0009330:intron 40.0%
TGTGTCTCTTGAGAAGTAGA+AGG + chr1_1:13616356-13616375 None:intergenic 40.0%
TGCTGATACACAAGTACAAC+AGG - chr1_1:13616394-13616413 Msa0009330:intron 40.0%
GCTGATACACAAGTACAACA+GGG - chr1_1:13616395-13616414 Msa0009330:intron 40.0%
! AGAATTTGTGGGATGGACTT+TGG - chr1_1:13616483-13616502 Msa0009330:CDS 40.0%
AAACACTGGATGGAGTGTAA+TGG - chr1_1:13615560-13615579 Msa0009330:CDS 40.0%
GAAGAAGATAGATGGAGGAA+AGG - chr1_1:13615582-13615601 Msa0009330:CDS 40.0%
ATTGAGTATGTCAAGCAGCA+TGG - chr1_1:13615636-13615655 Msa0009330:CDS 40.0%
TTTGCAGGACTGAGAAGAAA+TGG - chr1_1:13615823-13615842 Msa0009330:CDS 40.0%
TTGCAGGACTGAGAAGAAAT+GGG - chr1_1:13615824-13615843 Msa0009330:CDS 40.0%
CTAAGACCAGACCTTAAGAA+GGG - chr1_1:13615877-13615896 Msa0009330:CDS 40.0%
GTGTTATCTGACCCTTCTTA+AGG + chr1_1:13615891-13615910 None:intergenic 40.0%
TAATCCTAGAGCTACATGCT+AGG - chr1_1:13615926-13615945 Msa0009330:CDS 40.0%
CTGGAAACGCGTAATTTCAA+CGG + chr1_1:13615982-13616001 None:intergenic 40.0%
ATCTCATTGTCAGTTCTTCC+CGG + chr1_1:13616116-13616135 None:intergenic 40.0%
!! GATCATAGACTTGTTGCTTG+AGG - chr1_1:13616307-13616326 Msa0009330:intron 40.0%
TGTGTCTCTTGAGAAGTAGA+AGG + chr1_1:13616356-13616375 None:intergenic 40.0%
TGCTGATACACAAGTACAAC+AGG - chr1_1:13616394-13616413 Msa0009330:intron 40.0%
GCTGATACACAAGTACAACA+GGG - chr1_1:13616395-13616414 Msa0009330:intron 40.0%
! AGAATTTGTGGGATGGACTT+TGG - chr1_1:13616483-13616502 Msa0009330:CDS 40.0%
! GGAATGATGGAAGGAAACAC+TGG - chr1_1:13615546-13615565 Msa0009330:CDS 45.0%
TGATGGAAGGAAACACTGGA+TGG - chr1_1:13615550-13615569 Msa0009330:CDS 45.0%
ATAGATGGAGGAAAGGACCT+TGG - chr1_1:13615589-13615608 Msa0009330:CDS 45.0%
TTGTCTTCCTCAGAAGTCCA+AGG + chr1_1:13615609-13615628 None:intergenic 45.0%
TATGTCAAGCAGCATGGTGA+AGG - chr1_1:13615642-13615661 Msa0009330:CDS 45.0%
! CCTTCTTAAGGTCTGGTCTT+AGG + chr1_1:13615879-13615898 None:intergenic 45.0%
CCTAAGACCAGACCTTAAGA+AGG - chr1_1:13615876-13615895 Msa0009330:CDS 45.0%
ATCTGACCCTTCTTAAGGTC+TGG + chr1_1:13615886-13615905 None:intergenic 45.0%
AACAATTGCGAGAAGCTTGC+CGG - chr1_1:13616094-13616113 Msa0009330:intron 45.0%
TGGAACTTGGATGATGCTCT+TGG - chr1_1:13616503-13616522 Msa0009330:CDS 45.0%
ACTACATTGTGCACATTGGC+TGG + chr1_1:13616560-13616579 None:intergenic 45.0%
! GGAATGATGGAAGGAAACAC+TGG - chr1_1:13615546-13615565 Msa0009330:CDS 45.0%
TGATGGAAGGAAACACTGGA+TGG - chr1_1:13615550-13615569 Msa0009330:CDS 45.0%
ATAGATGGAGGAAAGGACCT+TGG - chr1_1:13615589-13615608 Msa0009330:CDS 45.0%
TTGTCTTCCTCAGAAGTCCA+AGG + chr1_1:13615609-13615628 None:intergenic 45.0%
TATGTCAAGCAGCATGGTGA+AGG - chr1_1:13615642-13615661 Msa0009330:CDS 45.0%
! CCTTCTTAAGGTCTGGTCTT+AGG + chr1_1:13615879-13615898 None:intergenic 45.0%
CCTAAGACCAGACCTTAAGA+AGG - chr1_1:13615876-13615895 Msa0009330:CDS 45.0%
ATCTGACCCTTCTTAAGGTC+TGG + chr1_1:13615886-13615905 None:intergenic 45.0%
AACAATTGCGAGAAGCTTGC+CGG - chr1_1:13616094-13616113 Msa0009330:intron 45.0%
TGGAACTTGGATGATGCTCT+TGG - chr1_1:13616503-13616522 Msa0009330:CDS 45.0%
ACTACATTGTGCACATTGGC+TGG + chr1_1:13616560-13616579 None:intergenic 45.0%
GAAAGGACCTTGGACTTCTG+AGG - chr1_1:13615599-13615618 Msa0009330:CDS 50.0%
GCAGATGGAACTCTGTCTCT+AGG - chr1_1:13615664-13615683 Msa0009330:CDS 50.0%
AACTCTGTCTCTAGGCTTGC+AGG - chr1_1:13615672-13615691 Msa0009330:CDS 50.0%
TCCTAGAGCTACATGCTAGG+TGG - chr1_1:13615929-13615948 Msa0009330:CDS 50.0%
CCTAGAGCTACATGCTAGGT+GGG - chr1_1:13615930-13615949 Msa0009330:CDS 50.0%
CTAGAGCTACATGCTAGGTG+GGG - chr1_1:13615931-13615950 Msa0009330:CDS 50.0%
TACATGCTAGGTGGGGAAAC+AGG - chr1_1:13615938-13615957 Msa0009330:CDS 50.0%
ACAATTGCGAGAAGCTTGCC+GGG - chr1_1:13616095-13616114 Msa0009330:intron 50.0%
! CCTTTTCAGCAGCATCAGAG+GGG + chr1_1:13616181-13616200 None:intergenic 50.0%
! GCCTTTTCAGCAGCATCAGA+GGG + chr1_1:13616182-13616201 None:intergenic 50.0%
!! GTGGGATGGACTTTGGAACT+TGG - chr1_1:13616490-13616509 Msa0009330:CDS 50.0%
GAAAGGACCTTGGACTTCTG+AGG - chr1_1:13615599-13615618 Msa0009330:CDS 50.0%
GCAGATGGAACTCTGTCTCT+AGG - chr1_1:13615664-13615683 Msa0009330:CDS 50.0%
AACTCTGTCTCTAGGCTTGC+AGG - chr1_1:13615672-13615691 Msa0009330:CDS 50.0%
TCCTAGAGCTACATGCTAGG+TGG - chr1_1:13615929-13615948 Msa0009330:CDS 50.0%
CCTAGAGCTACATGCTAGGT+GGG - chr1_1:13615930-13615949 Msa0009330:CDS 50.0%
CTAGAGCTACATGCTAGGTG+GGG - chr1_1:13615931-13615950 Msa0009330:CDS 50.0%
TACATGCTAGGTGGGGAAAC+AGG - chr1_1:13615938-13615957 Msa0009330:CDS 50.0%
ACAATTGCGAGAAGCTTGCC+GGG - chr1_1:13616095-13616114 Msa0009330:intron 50.0%
! CCTTTTCAGCAGCATCAGAG+GGG + chr1_1:13616181-13616200 None:intergenic 50.0%
! GCCTTTTCAGCAGCATCAGA+GGG + chr1_1:13616182-13616201 None:intergenic 50.0%
!! GTGGGATGGACTTTGGAACT+TGG - chr1_1:13616490-13616509 Msa0009330:CDS 50.0%
AGCAGCATGGTGAAGGCAGA+TGG - chr1_1:13615649-13615668 Msa0009330:CDS 55.0%
CCCACCTAGCATGTAGCTCT+AGG + chr1_1:13615933-13615952 None:intergenic 55.0%
ACCCGAGTTGCGTTGTGACA+CGG - chr1_1:13616021-13616040 Msa0009330:CDS 55.0%
ACCCGTGTCACAACGCAACT+CGG + chr1_1:13616026-13616045 None:intergenic 55.0%
CCCCTCTGATGCTGCTGAAA+AGG - chr1_1:13616178-13616197 Msa0009330:CDS 55.0%
! CGCCTTTTCAGCAGCATCAG+AGG + chr1_1:13616183-13616202 None:intergenic 55.0%
AGCAGCATGGTGAAGGCAGA+TGG - chr1_1:13615649-13615668 Msa0009330:CDS 55.0%
CCCACCTAGCATGTAGCTCT+AGG + chr1_1:13615933-13615952 None:intergenic 55.0%
ACCCGAGTTGCGTTGTGACA+CGG - chr1_1:13616021-13616040 Msa0009330:CDS 55.0%
ACCCGTGTCACAACGCAACT+CGG + chr1_1:13616026-13616045 None:intergenic 55.0%
CCCCTCTGATGCTGCTGAAA+AGG - chr1_1:13616178-13616197 Msa0009330:CDS 55.0%
! CGCCTTTTCAGCAGCATCAG+AGG + chr1_1:13616183-13616202 None:intergenic 55.0%
CCCGTGTCACAACGCAACTC+GGG + chr1_1:13616025-13616044 None:intergenic 60.0%
CCCGAGTTGCGTTGTGACAC+GGG - chr1_1:13616022-13616041 Msa0009330:CDS 60.0%
CCCGTGTCACAACGCAACTC+GGG + chr1_1:13616025-13616044 None:intergenic 60.0%
CCCGAGTTGCGTTGTGACAC+GGG - chr1_1:13616022-13616041 Msa0009330:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 13615537 13616595 13615537 ID=Msa0009330;Name=Msa0009330
chr1_1 mRNA 13615537 13616595 13615537 ID=Msa0009330-mRNA-1;Parent=Msa0009330;Name=Msa0009330-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|1|1|3|0|264
chr1_1 exon 13616439 13616595 13616439 ID=Msa0009330-mRNA-1:exon:5194;Parent=Msa0009330-mRNA-1
chr1_1 exon 13616173 13616302 13616173 ID=Msa0009330-mRNA-1:exon:5193;Parent=Msa0009330-mRNA-1
chr1_1 exon 13615537 13616044 13615537 ID=Msa0009330-mRNA-1:exon:5192;Parent=Msa0009330-mRNA-1
chr1_1 CDS 13616439 13616595 13616439 ID=Msa0009330-mRNA-1:cds;Parent=Msa0009330-mRNA-1
chr1_1 CDS 13616173 13616302 13616173 ID=Msa0009330-mRNA-1:cds;Parent=Msa0009330-mRNA-1
chr1_1 CDS 13615537 13616044 13615537 ID=Msa0009330-mRNA-1:cds;Parent=Msa0009330-mRNA-1
Gene Sequence

>Msa0009330

ATGTATTCAGGAATGATGGAAGGAAACACTGGATGGAGTGTAATGGAAGAAGATAGATGGAGGAAAGGACCTTGGACTTCTGAGGAAGACAAATTACTCATTGAGTATGTCAAGCAGCATGGTGAAGGCAGATGGAACTCTGTCTCTAGGCTTGCAGGACTGAGAAGAAATGGGAAAAGTTGTAGATTGAGATGGGTGAACTACCTAAGACCAGACCTTAAGAAGGGTCAGATAACACAACAAGAAGAAAGCATAATCCTAGAGCTACATGCTAGGTGGGGAAACAGGTGGTCAACAATTGCGAGAAGCTTGCCGGGAAGAACTGACAATGAGATAAAGAACTATTGGAGGACTCATTTCAAGAAAAAGATCAAAAACCCCTCTGATGCTGCTGAAAAGGCGAAAAATCGTTCTTTCAAGAGGCAGCAACAACAACAATTGAAGAAACAACAGCAACAAGTTCAGATGCAGCAACAACAACTACAATACAACATGGACATGAAAGGGATCATAGACTTGTTGCTTGAGGAAAATGACTACTGTACTAGTGTGCCTTCTACTTCTCAAGAGACACAAGAAATGGTTTCCATGTATGCTGATACACAAGTACAACAGGGTTGCTTTTATTCTATGCTCAATGATAATAGTGGTAATGTCTATGCACAAGAGTCTTCAAATGAAGAGAATTTGTGGGATGGACTTTGGAACTTGGATGATGCTCTTGGAAATTCAATGCAGCTAATGCTACAAGCAAAGCCAGCCAATGTGCACAATGTAGTTACTCCCTTTTGTTAA
Protein sequence

>Msa0009330

MYSGMMEGNTGWSVMEEDRWRKGPWTSEEDKLLIEYVKQHGEGRWNSVSRLAGLRRNGKSCRLRWVNYLRPDLKKGQITQQEESIILELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKIKNPSDAAEKAKNRSFKRQQQQQLKKQQQQVQMQQQQLQYNMDMKGIIDLLLEENDYCTSVPSTSQETQEMVSMYADTQVQQGCFYSMLNDNSGNVYAQESSNEENLWDGLWNLDDALGNSMQLMLQAKPANVHNVVTPFC*