Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0009960 | sp|Q700C7|SPCH_ARATH | 44.109 | 331 | 114 | 7 | 19 | 278 | 14 | 344 | 1.72e-70 | 224 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0009960 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0009960 | MtrunA17_Chr1g0158941 | 91.367 | 278 | 19 | 1 | 1 | 278 | 1 | 273 | 4.98e-177 | 489 |
| Msa0009960 | MtrunA17_Chr3g0126381 | 60.440 | 182 | 46 | 6 | 121 | 278 | 1 | 180 | 5.63e-58 | 184 |
| Msa0009960 | MtrunA17_Chr2g0287761 | 49.198 | 187 | 74 | 2 | 92 | 278 | 1 | 166 | 5.85e-54 | 173 |
| Msa0009960 | MtrunA17_Chr0c01g0489461 | 38.655 | 238 | 123 | 4 | 43 | 279 | 156 | 371 | 1.41e-45 | 158 |
| Msa0009960 | MtrunA17_Chr3g0132471 | 36.123 | 227 | 127 | 3 | 54 | 278 | 79 | 289 | 1.39e-36 | 132 |
| Msa0009960 | MtrunA17_Chr7g0273081 | 38.318 | 214 | 108 | 4 | 66 | 278 | 93 | 283 | 2.69e-35 | 129 |
| Msa0009960 | MtrunA17_Chr1g0191571 | 39.487 | 195 | 89 | 4 | 91 | 278 | 135 | 307 | 7.62e-34 | 125 |
| Msa0009960 | MtrunA17_Chr8g0366551 | 36.410 | 195 | 90 | 5 | 91 | 278 | 123 | 290 | 1.22e-32 | 122 |
| Msa0009960 | MtrunA17_Chr3g0126361 | 53.846 | 130 | 37 | 7 | 15 | 123 | 5 | 132 | 4.57e-30 | 110 |
| Msa0009960 | MtrunA17_Chr5g0426851 | 32.117 | 274 | 137 | 8 | 27 | 278 | 23 | 269 | 9.37e-29 | 111 |
| Msa0009960 | MtrunA17_Chr8g0345871 | 30.435 | 253 | 133 | 4 | 40 | 278 | 115 | 338 | 1.03e-24 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0009960 | AT5G53210.2 | 44.411 | 331 | 113 | 7 | 19 | 278 | 14 | 344 | 5.84e-72 | 225 |
| Msa0009960 | AT5G53210.1 | 44.109 | 331 | 114 | 7 | 19 | 278 | 14 | 344 | 1.74e-71 | 224 |
| Msa0009960 | AT3G06120.1 | 45.213 | 188 | 87 | 3 | 92 | 278 | 1 | 173 | 4.73e-45 | 151 |
| Msa0009960 | AT3G24140.2 | 40.758 | 211 | 113 | 2 | 69 | 279 | 177 | 375 | 2.79e-44 | 155 |
| Msa0009960 | AT3G24140.1 | 40.758 | 211 | 113 | 2 | 69 | 279 | 177 | 375 | 2.87e-44 | 155 |
| Msa0009960 | AT1G72210.2 | 35.500 | 200 | 84 | 5 | 91 | 278 | 124 | 290 | 1.14e-29 | 114 |
| Msa0009960 | AT1G72210.1 | 35.500 | 200 | 84 | 5 | 91 | 278 | 124 | 290 | 1.20e-29 | 114 |
| Msa0009960 | AT1G22490.1 | 35.638 | 188 | 97 | 3 | 91 | 278 | 114 | 277 | 4.31e-26 | 104 |
| Msa0009960 | AT1G22490.2 | 35.638 | 188 | 97 | 3 | 91 | 278 | 114 | 277 | 1.61e-25 | 103 |
| Msa0009960 | AT4G01460.1 | 35.450 | 189 | 101 | 2 | 90 | 278 | 113 | 280 | 3.14e-24 | 99.8 |
| Msa0009960 | AT4G01460.2 | 35.450 | 189 | 101 | 2 | 90 | 278 | 113 | 280 | 3.14e-24 | 99.8 |
| Msa0009960 | AT2G46810.4 | 32.804 | 189 | 95 | 2 | 91 | 278 | 120 | 277 | 7.61e-21 | 90.9 |
| Msa0009960 | AT2G46810.2 | 32.275 | 189 | 96 | 2 | 91 | 278 | 120 | 277 | 1.27e-20 | 89.7 |
| Msa0009960 | AT5G65320.1 | 34.000 | 200 | 108 | 4 | 79 | 278 | 93 | 268 | 1.79e-20 | 89.4 |
| Msa0009960 | AT5G65320.2 | 34.000 | 200 | 108 | 4 | 79 | 278 | 93 | 268 | 2.11e-20 | 88.6 |
| Msa0009960 | AT2G46810.3 | 32.275 | 189 | 96 | 2 | 91 | 278 | 180 | 337 | 3.63e-20 | 89.4 |
| Msa0009960 | AT2G46810.1 | 32.275 | 189 | 96 | 2 | 91 | 278 | 192 | 349 | 4.09e-20 | 89.4 |
| Msa0009960 | AT3G61950.6 | 31.638 | 177 | 85 | 2 | 91 | 265 | 126 | 268 | 4.41e-19 | 85.5 |
| Msa0009960 | AT3G61950.2 | 31.638 | 177 | 85 | 2 | 91 | 265 | 126 | 268 | 6.23e-19 | 85.1 |
| Msa0009960 | AT3G61950.3 | 31.638 | 177 | 85 | 2 | 91 | 265 | 177 | 319 | 8.27e-19 | 85.5 |
| Msa0009960 | AT3G61950.1 | 31.638 | 177 | 85 | 2 | 91 | 265 | 177 | 319 | 9.98e-19 | 85.1 |
| Msa0009960 | AT5G46690.2 | 56.164 | 73 | 30 | 1 | 91 | 161 | 87 | 159 | 1.53e-18 | 84.0 |
| Msa0009960 | AT5G46690.1 | 56.164 | 73 | 30 | 1 | 91 | 161 | 87 | 159 | 3.16e-18 | 83.6 |
Find 34 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTTGTTTCTTGGATTCT+AGG | 0.149526 | 1_1:+14832748 | None:intergenic |
| GCTATACTTGTTCACTATTA+AGG | 0.194492 | 1_1:-14832376 | Msa0009960:CDS |
| TATGGAGTTCTTGGACTAAT+TGG | 0.233920 | 1_1:+14832666 | None:intergenic |
| AACCGTTTCGTCACGAATTC+CGG | 0.237314 | 1_1:-14832484 | Msa0009960:CDS |
| CTCATTGATGTTATCATTGA+TGG | 0.240583 | 1_1:+14832578 | None:intergenic |
| AGCCATTGATATGGAGTTCT+TGG | 0.282669 | 1_1:+14832657 | None:intergenic |
| CTAATTGGTAAGATTATTCT+AGG | 0.295024 | 1_1:+14832681 | None:intergenic |
| CATTGTTGTAGCCATTGATA+TGG | 0.334687 | 1_1:+14832648 | None:intergenic |
| ATATTCAATGAAACTGAGTT+TGG | 0.348570 | 1_1:-14833423 | Msa0009960:CDS |
| AACAAGGTGTCATGATCTAT+TGG | 0.372909 | 1_1:+14833456 | None:intergenic |
| ACCGTTTCGTCACGAATTCC+GGG | 0.393233 | 1_1:-14832483 | Msa0009960:CDS |
| TGTGACTTCTTCAATTATAG+AGG | 0.399402 | 1_1:-14833250 | Msa0009960:CDS |
| ATGGAAGAAGCTGAAGAAGT+TGG | 0.426375 | 1_1:+14832597 | None:intergenic |
| GGACTTAGTGGTAAAGGTCT+TGG | 0.429539 | 1_1:+14832702 | None:intergenic |
| TTCGTCACGAATTCCGGGGC+AGG | 0.440139 | 1_1:-14832478 | Msa0009960:CDS |
| AAGATTATTCTAGGACTTAG+TGG | 0.440624 | 1_1:+14832690 | None:intergenic |
| ATTCTAGGACTTAGTGGTAA+AGG | 0.492814 | 1_1:+14832696 | None:intergenic |
| CCCCGGAATTCGTGACGAAA+CGG | 0.495669 | 1_1:+14832482 | None:intergenic |
| TGTCGCGAATTCAACATCTT+CGG | 0.496233 | 1_1:-14832553 | Msa0009960:CDS |
| GTACAAAATGGAAACTCAAA+AGG | 0.509601 | 1_1:-14833481 | None:intergenic |
| GTCCAAGAACTCCATATCAA+TGG | 0.523072 | 1_1:-14832659 | Msa0009960:CDS |
| ATCTTCGGTTGCTGATGTTG+AGG | 0.535328 | 1_1:-14832538 | Msa0009960:CDS |
| TGAAACTGAGTTTGGTTCAG+AGG | 0.550414 | 1_1:-14833415 | Msa0009960:CDS |
| TTGGAGATGGCTCAGATGAA+AGG | 0.570619 | 1_1:+14832616 | None:intergenic |
| ACATCGTATGTCGCATATCA+CGG | 0.587471 | 1_1:-14833208 | Msa0009960:CDS |
| GATCAAGCATCAATAGTTGA+AGG | 0.590664 | 1_1:-14832813 | Msa0009960:CDS |
| AATAGTGAACAAGTATAGCA+TGG | 0.592880 | 1_1:+14832380 | None:intergenic |
| GAAGCTGAAGAAGTTGGAGA+TGG | 0.605113 | 1_1:+14832603 | None:intergenic |
| ATTATTCTAAGAGCCTGCCC+CGG | 0.625886 | 1_1:+14832465 | None:intergenic |
| CCGTTTCGTCACGAATTCCG+GGG | 0.670932 | 1_1:-14832482 | Msa0009960:CDS |
| ATAGAGGAACAAAACAACGA+TGG | 0.690625 | 1_1:-14833234 | Msa0009960:CDS |
| CAATGGCTACAACAATGTGG+TGG | 0.701552 | 1_1:-14832642 | Msa0009960:CDS |
| TATCAATGGCTACAACAATG+TGG | 0.711948 | 1_1:-14832645 | Msa0009960:CDS |
| GAATATATCAGATAACAACA+AGG | 0.741545 | 1_1:+14833440 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATTGAAGTTTTCCAAAA+TGG | + | chr1_1:14832462-14832481 | None:intergenic | 20.0% |
| !!! | AGTTTTAAATGAAACTAGTT+AGG | - | chr1_1:14832793-14832812 | Msa0009960:CDS | 20.0% |
| !!! | GTTTTAAATGAAACTAGTTA+GGG | - | chr1_1:14832794-14832813 | Msa0009960:CDS | 20.0% |
| !!! | TTTTAAATGAAACTAGTTAG+GGG | - | chr1_1:14832795-14832814 | Msa0009960:CDS | 20.0% |
| !!! | ATTATTGAAGTTTTCCAAAA+TGG | + | chr1_1:14832462-14832481 | None:intergenic | 20.0% |
| !!! | AGTTTTAAATGAAACTAGTT+AGG | - | chr1_1:14832793-14832812 | Msa0009960:CDS | 20.0% |
| !!! | GTTTTAAATGAAACTAGTTA+GGG | - | chr1_1:14832794-14832813 | Msa0009960:CDS | 20.0% |
| !!! | TTTTAAATGAAACTAGTTAG+GGG | - | chr1_1:14832795-14832814 | Msa0009960:CDS | 20.0% |
| ! | GAATATATCAGATAACAACA+AGG | + | chr1_1:14832405-14832424 | None:intergenic | 25.0% |
| ! | ATATTCAATGAAACTGAGTT+TGG | - | chr1_1:14832419-14832438 | Msa0009960:CDS | 25.0% |
| !!! | AAGATGTTGTTTTTGAGTTT+TGG | + | chr1_1:14832505-14832524 | None:intergenic | 25.0% |
| ! | CAACTAATTACTCTTCTATA+TGG | - | chr1_1:14832998-14833017 | Msa0009960:intron | 25.0% |
| ! | ATTACTCTTCTATATGGTTT+AGG | - | chr1_1:14833004-14833023 | Msa0009960:intron | 25.0% |
| ! | TTACTCTTCTATATGGTTTA+GGG | - | chr1_1:14833005-14833024 | Msa0009960:intron | 25.0% |
| !!! | GTAAACTTTTCTTTGTTTCT+TGG | + | chr1_1:14833105-14833124 | None:intergenic | 25.0% |
| ! | CTAATTGGTAAGATTATTCT+AGG | + | chr1_1:14833164-14833183 | None:intergenic | 25.0% |
| ! | GAATATATCAGATAACAACA+AGG | + | chr1_1:14832405-14832424 | None:intergenic | 25.0% |
| ! | ATATTCAATGAAACTGAGTT+TGG | - | chr1_1:14832419-14832438 | Msa0009960:CDS | 25.0% |
| !!! | AAGATGTTGTTTTTGAGTTT+TGG | + | chr1_1:14832505-14832524 | None:intergenic | 25.0% |
| ! | CAACTAATTACTCTTCTATA+TGG | - | chr1_1:14832998-14833017 | Msa0009960:intron | 25.0% |
| ! | ATTACTCTTCTATATGGTTT+AGG | - | chr1_1:14833004-14833023 | Msa0009960:intron | 25.0% |
| ! | TTACTCTTCTATATGGTTTA+GGG | - | chr1_1:14833005-14833024 | Msa0009960:intron | 25.0% |
| !!! | GTAAACTTTTCTTTGTTTCT+TGG | + | chr1_1:14833105-14833124 | None:intergenic | 25.0% |
| ! | CTAATTGGTAAGATTATTCT+AGG | + | chr1_1:14833164-14833183 | None:intergenic | 25.0% |
| ! | AGAGGATCTATTTTCCATTT+TGG | - | chr1_1:14832445-14832464 | Msa0009960:CDS | 30.0% |
| !! | GAGTTTTGGTCATTGATAAT+GGG | + | chr1_1:14832491-14832510 | None:intergenic | 30.0% |
| !! | TGAGTTTTGGTCATTGATAA+TGG | + | chr1_1:14832492-14832511 | None:intergenic | 30.0% |
| TGTGACTTCTTCAATTATAG+AGG | - | chr1_1:14832592-14832611 | Msa0009960:CDS | 30.0% | |
| ! | ACTCTTTTGACATAAAAGCA+AGG | + | chr1_1:14832719-14832738 | None:intergenic | 30.0% |
| CATAAACCAGACCAAATTTA+TGG | - | chr1_1:14832829-14832848 | Msa0009960:intron | 30.0% | |
| ! | TTCTTTGTTTCTTGGATTCT+AGG | + | chr1_1:14833097-14833116 | None:intergenic | 30.0% |
| !! | AAGATTATTCTAGGACTTAG+TGG | + | chr1_1:14833155-14833174 | None:intergenic | 30.0% |
| CTCATTGATGTTATCATTGA+TGG | + | chr1_1:14833267-14833286 | None:intergenic | 30.0% | |
| AATAGTGAACAAGTATAGCA+TGG | + | chr1_1:14833465-14833484 | None:intergenic | 30.0% | |
| GCTATACTTGTTCACTATTA+AGG | - | chr1_1:14833466-14833485 | Msa0009960:CDS | 30.0% | |
| ! | AGAGGATCTATTTTCCATTT+TGG | - | chr1_1:14832445-14832464 | Msa0009960:CDS | 30.0% |
| !! | GAGTTTTGGTCATTGATAAT+GGG | + | chr1_1:14832491-14832510 | None:intergenic | 30.0% |
| !! | TGAGTTTTGGTCATTGATAA+TGG | + | chr1_1:14832492-14832511 | None:intergenic | 30.0% |
| TGTGACTTCTTCAATTATAG+AGG | - | chr1_1:14832592-14832611 | Msa0009960:CDS | 30.0% | |
| ! | ACTCTTTTGACATAAAAGCA+AGG | + | chr1_1:14832719-14832738 | None:intergenic | 30.0% |
| CATAAACCAGACCAAATTTA+TGG | - | chr1_1:14832829-14832848 | Msa0009960:intron | 30.0% | |
| ! | TTCTTTGTTTCTTGGATTCT+AGG | + | chr1_1:14833097-14833116 | None:intergenic | 30.0% |
| !! | AAGATTATTCTAGGACTTAG+TGG | + | chr1_1:14833155-14833174 | None:intergenic | 30.0% |
| CTCATTGATGTTATCATTGA+TGG | + | chr1_1:14833267-14833286 | None:intergenic | 30.0% | |
| AATAGTGAACAAGTATAGCA+TGG | + | chr1_1:14833465-14833484 | None:intergenic | 30.0% | |
| GCTATACTTGTTCACTATTA+AGG | - | chr1_1:14833466-14833485 | Msa0009960:CDS | 30.0% | |
| ! | AACAAGGTGTCATGATCTAT+TGG | + | chr1_1:14832389-14832408 | None:intergenic | 35.0% |
| ! | TGCTCATTTTCAGAAACTTG+AGG | + | chr1_1:14832536-14832555 | None:intergenic | 35.0% |
| ATAGAGGAACAAAACAACGA+TGG | - | chr1_1:14832608-14832627 | Msa0009960:CDS | 35.0% | |
| GATCAAGCATCAATAGTTGA+AGG | - | chr1_1:14833029-14833048 | Msa0009960:intron | 35.0% | |
| !! | ATTCTAGGACTTAGTGGTAA+AGG | + | chr1_1:14833149-14833168 | None:intergenic | 35.0% |
| TATGGAGTTCTTGGACTAAT+TGG | + | chr1_1:14833179-14833198 | None:intergenic | 35.0% | |
| CATTGTTGTAGCCATTGATA+TGG | + | chr1_1:14833197-14833216 | None:intergenic | 35.0% | |
| TATCAATGGCTACAACAATG+TGG | - | chr1_1:14833197-14833216 | Msa0009960:CDS | 35.0% | |
| ! | GATGTTGAGGTTAAGTTTTG+TGG | - | chr1_1:14833317-14833336 | Msa0009960:CDS | 35.0% |
| ! | AACAAGGTGTCATGATCTAT+TGG | + | chr1_1:14832389-14832408 | None:intergenic | 35.0% |
| ! | TGCTCATTTTCAGAAACTTG+AGG | + | chr1_1:14832536-14832555 | None:intergenic | 35.0% |
| ATAGAGGAACAAAACAACGA+TGG | - | chr1_1:14832608-14832627 | Msa0009960:CDS | 35.0% | |
| GATCAAGCATCAATAGTTGA+AGG | - | chr1_1:14833029-14833048 | Msa0009960:intron | 35.0% | |
| !! | ATTCTAGGACTTAGTGGTAA+AGG | + | chr1_1:14833149-14833168 | None:intergenic | 35.0% |
| TATGGAGTTCTTGGACTAAT+TGG | + | chr1_1:14833179-14833198 | None:intergenic | 35.0% | |
| CATTGTTGTAGCCATTGATA+TGG | + | chr1_1:14833197-14833216 | None:intergenic | 35.0% | |
| TATCAATGGCTACAACAATG+TGG | - | chr1_1:14833197-14833216 | Msa0009960:CDS | 35.0% | |
| ! | GATGTTGAGGTTAAGTTTTG+TGG | - | chr1_1:14833317-14833336 | Msa0009960:CDS | 35.0% |
| ! | TGAAACTGAGTTTGGTTCAG+AGG | - | chr1_1:14832427-14832446 | Msa0009960:CDS | 40.0% |
| ACATCGTATGTCGCATATCA+CGG | - | chr1_1:14832634-14832653 | Msa0009960:CDS | 40.0% | |
| ACCAGACCAAATTTATGGTC+TGG | - | chr1_1:14832834-14832853 | Msa0009960:intron | 40.0% | |
| ACCAGACCATAAATTTGGTC+TGG | + | chr1_1:14832838-14832857 | None:intergenic | 40.0% | |
| ACTGGACCAGACCATAAATT+TGG | + | chr1_1:14832843-14832862 | None:intergenic | 40.0% | |
| TAGACTACGGTTCGTAGTTA+GGG | + | chr1_1:14832878-14832897 | None:intergenic | 40.0% | |
| TAACTACGAACCGTAGTCTA+CGG | - | chr1_1:14832878-14832897 | Msa0009960:intron | 40.0% | |
| ATTGCATCAACCGTAGACTA+CGG | + | chr1_1:14832891-14832910 | None:intergenic | 40.0% | |
| GTCCAAGAACTCCATATCAA+TGG | - | chr1_1:14833183-14833202 | Msa0009960:CDS | 40.0% | |
| AGCCATTGATATGGAGTTCT+TGG | + | chr1_1:14833188-14833207 | None:intergenic | 40.0% | |
| ATGGAAGAAGCTGAAGAAGT+TGG | + | chr1_1:14833248-14833267 | None:intergenic | 40.0% | |
| TGTCGCGAATTCAACATCTT+CGG | - | chr1_1:14833289-14833308 | Msa0009960:CDS | 40.0% | |
| ! | TGAAACTGAGTTTGGTTCAG+AGG | - | chr1_1:14832427-14832446 | Msa0009960:CDS | 40.0% |
| ACATCGTATGTCGCATATCA+CGG | - | chr1_1:14832634-14832653 | Msa0009960:CDS | 40.0% | |
| ACCAGACCAAATTTATGGTC+TGG | - | chr1_1:14832834-14832853 | Msa0009960:intron | 40.0% | |
| ACCAGACCATAAATTTGGTC+TGG | + | chr1_1:14832838-14832857 | None:intergenic | 40.0% | |
| ACTGGACCAGACCATAAATT+TGG | + | chr1_1:14832843-14832862 | None:intergenic | 40.0% | |
| TAGACTACGGTTCGTAGTTA+GGG | + | chr1_1:14832878-14832897 | None:intergenic | 40.0% | |
| TAACTACGAACCGTAGTCTA+CGG | - | chr1_1:14832878-14832897 | Msa0009960:intron | 40.0% | |
| ATTGCATCAACCGTAGACTA+CGG | + | chr1_1:14832891-14832910 | None:intergenic | 40.0% | |
| GTCCAAGAACTCCATATCAA+TGG | - | chr1_1:14833183-14833202 | Msa0009960:CDS | 40.0% | |
| AGCCATTGATATGGAGTTCT+TGG | + | chr1_1:14833188-14833207 | None:intergenic | 40.0% | |
| ATGGAAGAAGCTGAAGAAGT+TGG | + | chr1_1:14833248-14833267 | None:intergenic | 40.0% | |
| TGTCGCGAATTCAACATCTT+CGG | - | chr1_1:14833289-14833308 | Msa0009960:CDS | 40.0% | |
| ! | TTAGGGGTGTGCAAAAGAAC+TGG | + | chr1_1:14832861-14832880 | None:intergenic | 45.0% |
| AGACTACGGTTCGTAGTTAG+GGG | + | chr1_1:14832877-14832896 | None:intergenic | 45.0% | |
| GTAGACTACGGTTCGTAGTT+AGG | + | chr1_1:14832879-14832898 | None:intergenic | 45.0% | |
| GGACTTAGTGGTAAAGGTCT+TGG | + | chr1_1:14833143-14833162 | None:intergenic | 45.0% | |
| CAATGGCTACAACAATGTGG+TGG | - | chr1_1:14833200-14833219 | Msa0009960:CDS | 45.0% | |
| TTGGAGATGGCTCAGATGAA+AGG | + | chr1_1:14833229-14833248 | None:intergenic | 45.0% | |
| GAAGCTGAAGAAGTTGGAGA+TGG | + | chr1_1:14833242-14833261 | None:intergenic | 45.0% | |
| ATCTTCGGTTGCTGATGTTG+AGG | - | chr1_1:14833304-14833323 | Msa0009960:CDS | 45.0% | |
| AACCGTTTCGTCACGAATTC+CGG | - | chr1_1:14833358-14833377 | Msa0009960:CDS | 45.0% | |
| ! | ATTATTCTAAGAGCCTGCCC+CGG | + | chr1_1:14833380-14833399 | None:intergenic | 45.0% |
| ! | TTAGGGGTGTGCAAAAGAAC+TGG | + | chr1_1:14832861-14832880 | None:intergenic | 45.0% |
| AGACTACGGTTCGTAGTTAG+GGG | + | chr1_1:14832877-14832896 | None:intergenic | 45.0% | |
| GTAGACTACGGTTCGTAGTT+AGG | + | chr1_1:14832879-14832898 | None:intergenic | 45.0% | |
| GGACTTAGTGGTAAAGGTCT+TGG | + | chr1_1:14833143-14833162 | None:intergenic | 45.0% | |
| CAATGGCTACAACAATGTGG+TGG | - | chr1_1:14833200-14833219 | Msa0009960:CDS | 45.0% | |
| TTGGAGATGGCTCAGATGAA+AGG | + | chr1_1:14833229-14833248 | None:intergenic | 45.0% | |
| GAAGCTGAAGAAGTTGGAGA+TGG | + | chr1_1:14833242-14833261 | None:intergenic | 45.0% | |
| ATCTTCGGTTGCTGATGTTG+AGG | - | chr1_1:14833304-14833323 | Msa0009960:CDS | 45.0% | |
| AACCGTTTCGTCACGAATTC+CGG | - | chr1_1:14833358-14833377 | Msa0009960:CDS | 45.0% | |
| ! | ATTATTCTAAGAGCCTGCCC+CGG | + | chr1_1:14833380-14833399 | None:intergenic | 45.0% |
| !!! | TAATTTTAATCTTAATAAAA+AGG | + | chr1_1:14832935-14832954 | None:intergenic | 5.0% |
| !!! | TAATTTTAATCTTAATAAAA+AGG | + | chr1_1:14832935-14832954 | None:intergenic | 5.0% |
| ACCGTTTCGTCACGAATTCC+GGG | - | chr1_1:14833359-14833378 | Msa0009960:CDS | 50.0% | |
| ACCGTTTCGTCACGAATTCC+GGG | - | chr1_1:14833359-14833378 | Msa0009960:CDS | 50.0% | |
| CCCCGGAATTCGTGACGAAA+CGG | + | chr1_1:14833363-14833382 | None:intergenic | 55.0% | |
| CCGTTTCGTCACGAATTCCG+GGG | - | chr1_1:14833360-14833379 | Msa0009960:CDS | 55.0% | |
| CCCCGGAATTCGTGACGAAA+CGG | + | chr1_1:14833363-14833382 | None:intergenic | 55.0% | |
| CCGTTTCGTCACGAATTCCG+GGG | - | chr1_1:14833360-14833379 | Msa0009960:CDS | 55.0% | |
| TTCGTCACGAATTCCGGGGC+AGG | - | chr1_1:14833364-14833383 | Msa0009960:CDS | 60.0% | |
| TTCGTCACGAATTCCGGGGC+AGG | - | chr1_1:14833364-14833383 | Msa0009960:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 14832368 | 14833496 | 14832368 | ID=Msa0009960;Name=Msa0009960 |
| chr1_1 | mRNA | 14832368 | 14833496 | 14832368 | ID=Msa0009960-mRNA-1;Parent=Msa0009960;Name=Msa0009960-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|279 |
| chr1_1 | exon | 14833128 | 14833496 | 14833128 | ID=Msa0009960-mRNA-1:exon:5499;Parent=Msa0009960-mRNA-1 |
| chr1_1 | exon | 14832368 | 14832838 | 14832368 | ID=Msa0009960-mRNA-1:exon:5498;Parent=Msa0009960-mRNA-1 |
| chr1_1 | CDS | 14833128 | 14833496 | 14833128 | ID=Msa0009960-mRNA-1:cds;Parent=Msa0009960-mRNA-1 |
| chr1_1 | CDS | 14832368 | 14832838 | 14832368 | ID=Msa0009960-mRNA-1:cds;Parent=Msa0009960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
