Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0010170 | sp|O23310|NFYB3_ARATH | 52.381 | 105 | 50 | 0 | 50 | 154 | 19 | 123 | 9.67e-34 | 120 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0010170 | TF | NF-YB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0010170 | MtrunA17_Chr1g0159271 | 95.327 | 107 | 5 | 0 | 66 | 172 | 1 | 107 | 1.25e-61 | 186 |
| Msa0010170 | MtrunA17_Chr1g0185911 | 50.000 | 120 | 50 | 2 | 57 | 172 | 34 | 147 | 6.88e-35 | 120 |
| Msa0010170 | MtrunA17_Chr1g0165041 | 57.303 | 89 | 38 | 0 | 57 | 145 | 11 | 99 | 2.09e-34 | 119 |
| Msa0010170 | MtrunA17_Chr8g0382931 | 47.541 | 122 | 58 | 1 | 32 | 153 | 14 | 129 | 2.28e-34 | 120 |
| Msa0010170 | MtrunA17_Chr7g0263601 | 47.788 | 113 | 48 | 1 | 57 | 169 | 31 | 132 | 1.16e-33 | 117 |
| Msa0010170 | MtrunA17_Chr2g0290491 | 56.044 | 91 | 40 | 0 | 57 | 147 | 22 | 112 | 1.50e-32 | 114 |
| Msa0010170 | MtrunA17_Chr5g0446491 | 46.094 | 128 | 58 | 2 | 39 | 159 | 3 | 126 | 4.07e-32 | 113 |
| Msa0010170 | MtrunA17_Chr3g0102351 | 56.180 | 89 | 39 | 0 | 57 | 145 | 32 | 120 | 1.19e-31 | 112 |
| Msa0010170 | MtrunA17_Chr4g0076381 | 40.441 | 136 | 80 | 1 | 9 | 144 | 16 | 150 | 5.61e-31 | 112 |
| Msa0010170 | MtrunA17_Chr4g0076321 | 54.945 | 91 | 41 | 0 | 53 | 143 | 20 | 110 | 1.68e-30 | 108 |
| Msa0010170 | MtrunA17_Chr1g0195851 | 44.954 | 109 | 60 | 0 | 37 | 145 | 21 | 129 | 2.80e-30 | 109 |
| Msa0010170 | MtrunA17_Chr8g0384451 | 53.933 | 89 | 41 | 0 | 57 | 145 | 45 | 133 | 7.46e-30 | 108 |
| Msa0010170 | MtrunA17_Chr1g0158951 | 56.098 | 82 | 36 | 0 | 87 | 168 | 24 | 105 | 2.07e-27 | 99.4 |
| Msa0010170 | MtrunA17_Chr4g0067091 | 43.810 | 105 | 59 | 0 | 53 | 157 | 23 | 127 | 4.21e-27 | 101 |
| Msa0010170 | MtrunA17_Chr2g0296321 | 47.826 | 92 | 48 | 0 | 53 | 144 | 67 | 158 | 1.82e-26 | 100 |
| Msa0010170 | MtrunA17_Chr1g0159291 | 45.000 | 80 | 44 | 0 | 53 | 132 | 3 | 82 | 2.99e-22 | 85.5 |
| Msa0010170 | MtrunA17_Chr1g0191981 | 42.529 | 87 | 50 | 0 | 57 | 143 | 9 | 95 | 3.86e-22 | 86.3 |
| Msa0010170 | MtrunA17_Chr5g0446601 | 33.721 | 86 | 57 | 0 | 56 | 141 | 28 | 113 | 5.62e-14 | 66.6 |
| Msa0010170 | MtrunA17_Chr2g0307551 | 26.415 | 106 | 78 | 0 | 42 | 147 | 1 | 106 | 1.38e-12 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0010170 | AT4G14540.1 | 52.381 | 105 | 50 | 0 | 50 | 154 | 19 | 123 | 9.83e-35 | 120 |
| Msa0010170 | AT2G38880.7 | 50.893 | 112 | 51 | 2 | 57 | 168 | 26 | 133 | 2.26e-33 | 115 |
| Msa0010170 | AT3G53340.5 | 42.029 | 138 | 57 | 2 | 30 | 167 | 19 | 133 | 3.14e-33 | 116 |
| Msa0010170 | AT3G53340.1 | 42.029 | 138 | 57 | 2 | 30 | 167 | 19 | 133 | 3.14e-33 | 116 |
| Msa0010170 | AT2G38880.3 | 49.558 | 113 | 53 | 2 | 57 | 168 | 26 | 135 | 4.82e-33 | 115 |
| Msa0010170 | AT2G38880.2 | 49.558 | 113 | 53 | 2 | 57 | 168 | 26 | 135 | 5.35e-33 | 114 |
| Msa0010170 | AT2G38880.1 | 49.558 | 113 | 53 | 2 | 57 | 168 | 26 | 135 | 5.35e-33 | 114 |
| Msa0010170 | AT2G38880.5 | 49.558 | 113 | 53 | 2 | 57 | 168 | 26 | 135 | 5.35e-33 | 114 |
| Msa0010170 | AT2G37060.2 | 46.552 | 116 | 59 | 1 | 57 | 172 | 35 | 147 | 6.57e-33 | 115 |
| Msa0010170 | AT2G37060.3 | 46.552 | 116 | 59 | 1 | 57 | 172 | 35 | 147 | 6.57e-33 | 115 |
| Msa0010170 | AT2G37060.1 | 46.552 | 116 | 59 | 1 | 57 | 172 | 35 | 147 | 6.57e-33 | 115 |
| Msa0010170 | AT5G47640.1 | 55.435 | 92 | 41 | 0 | 57 | 148 | 32 | 123 | 1.12e-32 | 115 |
| Msa0010170 | AT1G21970.1 | 41.176 | 153 | 77 | 3 | 1 | 143 | 1 | 150 | 8.50e-32 | 114 |
| Msa0010170 | AT5G47670.2 | 52.041 | 98 | 46 | 1 | 57 | 154 | 34 | 130 | 9.51e-32 | 113 |
| Msa0010170 | AT5G47670.1 | 52.041 | 98 | 46 | 1 | 57 | 154 | 63 | 159 | 1.94e-31 | 113 |
| Msa0010170 | AT5G47670.3 | 52.041 | 98 | 46 | 1 | 57 | 154 | 63 | 159 | 1.94e-31 | 113 |
| Msa0010170 | AT3G53340.4 | 45.045 | 111 | 49 | 1 | 30 | 140 | 19 | 117 | 6.62e-31 | 108 |
| Msa0010170 | AT2G38880.4 | 54.762 | 84 | 38 | 0 | 57 | 140 | 26 | 109 | 9.08e-31 | 108 |
| Msa0010170 | AT2G13570.1 | 55.056 | 89 | 40 | 0 | 57 | 145 | 41 | 129 | 1.08e-30 | 111 |
| Msa0010170 | AT3G53340.3 | 43.966 | 116 | 53 | 1 | 30 | 145 | 19 | 122 | 1.29e-30 | 108 |
| Msa0010170 | AT3G53340.2 | 43.966 | 116 | 53 | 1 | 30 | 145 | 19 | 122 | 1.29e-30 | 108 |
| Msa0010170 | AT2G38880.11 | 54.762 | 84 | 38 | 0 | 57 | 140 | 26 | 109 | 2.22e-30 | 108 |
| Msa0010170 | AT2G38880.8 | 54.762 | 84 | 38 | 0 | 57 | 140 | 26 | 109 | 2.22e-30 | 108 |
| Msa0010170 | AT2G38880.9 | 54.762 | 84 | 38 | 0 | 57 | 140 | 26 | 109 | 6.69e-30 | 107 |
| Msa0010170 | AT2G38880.10 | 54.762 | 84 | 38 | 0 | 57 | 140 | 26 | 109 | 6.69e-30 | 107 |
| Msa0010170 | AT2G38880.6 | 54.762 | 84 | 38 | 0 | 57 | 140 | 26 | 109 | 6.69e-30 | 107 |
| Msa0010170 | AT2G47810.1 | 51.190 | 84 | 41 | 0 | 57 | 140 | 56 | 139 | 1.70e-27 | 101 |
| Msa0010170 | AT1G09030.1 | 43.119 | 109 | 60 | 1 | 51 | 159 | 2 | 108 | 1.22e-26 | 98.6 |
| Msa0010170 | AT5G08190.1 | 27.358 | 106 | 77 | 0 | 46 | 151 | 5 | 110 | 1.04e-11 | 60.5 |
| Msa0010170 | AT5G08190.2 | 30.952 | 84 | 58 | 0 | 46 | 129 | 5 | 88 | 1.20e-11 | 60.1 |
Find 47 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTAATTTCATATCAATAT+TGG | 0.244898 | 1_1:-15233737 | None:intergenic |
| GCATGATTCTTGTCAAATTT+CGG | 0.290312 | 1_1:-15233404 | None:intergenic |
| CCTCATGGTTGCGATAGTTT+TGG | 0.293177 | 1_1:-15233635 | None:intergenic |
| TTAGTGGTGAAGATATAATA+TGG | 0.337402 | 1_1:+15233559 | Msa0010170:CDS |
| CATGGGTAGGTTAGGGTTTG+AGG | 0.343933 | 1_1:+15233584 | Msa0010170:CDS |
| ATATGGGCCATGGGTAGGTT+AGG | 0.348171 | 1_1:+15233576 | Msa0010170:CDS |
| ATTGTGTGTGTCTGATTTCA+TGG | 0.410886 | 1_1:+15233482 | Msa0010170:CDS |
| AACATGGATGGGTCGGGTGC+TGG | 0.425049 | 1_1:+15233693 | Msa0010170:CDS |
| CACAGTTCCTCATTTGTTGT+TGG | 0.457296 | 1_1:-15233372 | None:intergenic |
| ACACAATTGTGTTGTTGCCT+TGG | 0.463454 | 1_1:-15233466 | None:intergenic |
| ATGGATGGGTCGGGTGCTGG+TGG | 0.486211 | 1_1:+15233696 | Msa0010170:CDS |
| GAGAGTCGAAAGATCATTAG+TGG | 0.486411 | 1_1:+15233543 | Msa0010170:CDS |
| TATGGGCCATGGGTAGGTTA+GGG | 0.487469 | 1_1:+15233577 | Msa0010170:CDS |
| GATTTAGTCCGTTTGCAAGC+AGG | 0.497822 | 1_1:+15233276 | Msa0010170:intron |
| TGGATTCAACATGGATGGGT+CGG | 0.500255 | 1_1:+15233686 | Msa0010170:CDS |
| AGTTCCTCATTTGTTGTTGG+AGG | 0.507953 | 1_1:-15233369 | None:intergenic |
| GGATTCAACATGGATGGGTC+GGG | 0.516213 | 1_1:+15233687 | Msa0010170:CDS |
| ATTTAGTCCGTTTGCAAGCA+GGG | 0.519142 | 1_1:+15233277 | Msa0010170:intron |
| GATTCTTGTCAAATTTCGGA+TGG | 0.519326 | 1_1:-15233400 | None:intergenic |
| TTAGGGTTTGAGGACTATGT+TGG | 0.522305 | 1_1:+15233594 | Msa0010170:CDS |
| TGAAGATATAATATGGGCCA+TGG | 0.523399 | 1_1:+15233566 | Msa0010170:CDS |
| ATGGACTCCCTGCTTGCAAA+CGG | 0.525534 | 1_1:-15233284 | None:intergenic |
| GCTCGTGGATTCAACATGGA+TGG | 0.528087 | 1_1:+15233681 | Msa0010170:CDS |
| GGTGCTGGTGGCTCGAGCAG+TGG | 0.541755 | 1_1:+15233708 | Msa0010170:CDS |
| CGTTCAGCACAATCAAGCTC+TGG | 0.543458 | 1_1:+15232059 | Msa0010170:CDS |
| TAGTGGTGAAGATATAATAT+GGG | 0.544148 | 1_1:+15233560 | Msa0010170:CDS |
| GGTGGCTCGAGCAGTGGTAA+TGG | 0.549299 | 1_1:+15233714 | Msa0010170:CDS |
| TGAACGGTTGTTGTTAAATG+AGG | 0.552826 | 1_1:-15232042 | None:intergenic |
| TCCTAAAGTAGCATGGAGCA+TGG | 0.582752 | 1_1:+15232014 | None:intergenic |
| AGTGGCACGTCAACTGCTCG+TGG | 0.583180 | 1_1:+15233666 | Msa0010170:CDS |
| CTCGTGGATTCAACATGGAT+GGG | 0.584715 | 1_1:+15233682 | Msa0010170:CDS |
| TTTACCTCCAACAACAAATG+AGG | 0.591369 | 1_1:+15233365 | Msa0010170:CDS |
| AACCATGAGGCTCAATTCAG+TGG | 0.593599 | 1_1:+15233648 | Msa0010170:CDS |
| ATTCTTGTCAAATTTCGGAT+GGG | 0.595454 | 1_1:-15233399 | None:intergenic |
| ATGAAAACAATGAATCTCCA+AGG | 0.596844 | 1_1:+15233307 | Msa0010170:CDS |
| TTGTGTGTGTCTGATTTCAT+GGG | 0.598205 | 1_1:+15233483 | Msa0010170:CDS |
| ATATAATATGGGCCATGGGT+AGG | 0.601954 | 1_1:+15233571 | Msa0010170:CDS |
| AACTGCTCGTGGATTCAACA+TGG | 0.604751 | 1_1:+15233677 | Msa0010170:CDS |
| CTCAAACCCTAACCTACCCA+TGG | 0.607706 | 1_1:-15233583 | None:intergenic |
| GAAGATATAATATGGGCCAT+GGG | 0.615040 | 1_1:+15233567 | Msa0010170:CDS |
| GCATTTCTCAACAGCCTCAG+TGG | 0.623536 | 1_1:-15233514 | None:intergenic |
| CAGAGCTTGATTGTGCTGAA+CGG | 0.629066 | 1_1:-15232058 | None:intergenic |
| TGCCACTGAATTGAGCCTCA+TGG | 0.650553 | 1_1:-15233650 | None:intergenic |
| GAACGGTTGTTGTTAAATGA+GGG | 0.692444 | 1_1:-15232041 | None:intergenic |
| GAAATTTGACAAGAATCATG+CGG | 0.699293 | 1_1:+15233406 | Msa0010170:CDS |
| CCAAAACTATCGCAACCATG+AGG | 0.711644 | 1_1:+15233635 | Msa0010170:CDS |
| CATGGGCATCATCACCACTG+AGG | 0.758004 | 1_1:+15233500 | Msa0010170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCTAATAAAATCAATTAA+GGG | - | chr1_1:15232326-15232345 | None:intergenic | 10.0% |
| !!! | TTTAATGAAATTTTGATTTA+AGG | + | chr1_1:15232470-15232489 | Msa0010170:intron | 10.0% |
| !!! | TTAATGAAATTTTGATTTAA+GGG | + | chr1_1:15232471-15232490 | Msa0010170:intron | 10.0% |
| !!! | ATTATTGTATTTAAAACTAA+TGG | + | chr1_1:15232739-15232758 | Msa0010170:intron | 10.0% |
| !!! | TTATTGTATTTAAAACTAAT+GGG | + | chr1_1:15232740-15232759 | Msa0010170:intron | 10.0% |
| !! | AATCTAATAAAATCAATTAA+GGG | - | chr1_1:15232326-15232345 | None:intergenic | 10.0% |
| !!! | TTTAATGAAATTTTGATTTA+AGG | + | chr1_1:15232470-15232489 | Msa0010170:intron | 10.0% |
| !!! | TTAATGAAATTTTGATTTAA+GGG | + | chr1_1:15232471-15232490 | Msa0010170:intron | 10.0% |
| !!! | ATTATTGTATTTAAAACTAA+TGG | + | chr1_1:15232739-15232758 | Msa0010170:intron | 10.0% |
| !!! | TTATTGTATTTAAAACTAAT+GGG | + | chr1_1:15232740-15232759 | Msa0010170:intron | 10.0% |
| !! | ATCTAATAAAATCAATTAAG+GGG | - | chr1_1:15232325-15232344 | None:intergenic | 15.0% |
| !! | GAATCTAATAAAATCAATTA+AGG | - | chr1_1:15232327-15232346 | None:intergenic | 15.0% |
| !!! | TAATGAAATTTTGATTTAAG+GGG | + | chr1_1:15232472-15232491 | Msa0010170:intron | 15.0% |
| !!! | TTATTATTTTAATATGTCTG+AGG | + | chr1_1:15232576-15232595 | Msa0010170:intron | 15.0% |
| !!! | TATTATTTTAATATGTCTGA+GGG | + | chr1_1:15232577-15232596 | Msa0010170:intron | 15.0% |
| !!! | TTTTTCTACTTTTAAATCTA+AGG | - | chr1_1:15233069-15233088 | None:intergenic | 15.0% |
| !! | ATCTAATAAAATCAATTAAG+GGG | - | chr1_1:15232325-15232344 | None:intergenic | 15.0% |
| !! | GAATCTAATAAAATCAATTA+AGG | - | chr1_1:15232327-15232346 | None:intergenic | 15.0% |
| !!! | TAATGAAATTTTGATTTAAG+GGG | + | chr1_1:15232472-15232491 | Msa0010170:intron | 15.0% |
| !!! | TTATTATTTTAATATGTCTG+AGG | + | chr1_1:15232576-15232595 | Msa0010170:intron | 15.0% |
| !!! | TATTATTTTAATATGTCTGA+GGG | + | chr1_1:15232577-15232596 | Msa0010170:intron | 15.0% |
| !!! | TTTTTCTACTTTTAAATCTA+AGG | - | chr1_1:15233069-15233088 | None:intergenic | 15.0% |
| !!! | TATTATTTTAGAGAAATACG+AGG | - | chr1_1:15232148-15232167 | None:intergenic | 20.0% |
| !!! | ATCAAAATCAATCTTTTACA+AGG | - | chr1_1:15232231-15232250 | None:intergenic | 20.0% |
| !! | TCTAATAAAATCAATTAAGG+GGG | - | chr1_1:15232324-15232343 | None:intergenic | 20.0% |
| !!! | TTGATTTTATTAGATTCTCA+AGG | + | chr1_1:15232330-15232349 | Msa0010170:intron | 20.0% |
| !!! | TATTATTTTAGAGAAATACG+AGG | - | chr1_1:15232148-15232167 | None:intergenic | 20.0% |
| !!! | ATCAAAATCAATCTTTTACA+AGG | - | chr1_1:15232231-15232250 | None:intergenic | 20.0% |
| !! | TCTAATAAAATCAATTAAGG+GGG | - | chr1_1:15232324-15232343 | None:intergenic | 20.0% |
| !!! | TTGATTTTATTAGATTCTCA+AGG | + | chr1_1:15232330-15232349 | Msa0010170:intron | 20.0% |
| ! | GGGATGACAAAAAAAAAATA+TGG | + | chr1_1:15232492-15232511 | Msa0010170:intron | 25.0% |
| !!! | TTTTTAGTGTGAATCGAATT+CGG | - | chr1_1:15232620-15232639 | None:intergenic | 25.0% |
| !! | CTAAAAAAGATTTGAGATCT+TGG | + | chr1_1:15232633-15232652 | Msa0010170:intron | 25.0% |
| ! | TAGAAATAAAGTGAGAGAAA+AGG | + | chr1_1:15232830-15232849 | Msa0010170:intron | 25.0% |
| ! | AGCAAAATTGACGTATTTAA+GGG | - | chr1_1:15232879-15232898 | None:intergenic | 25.0% |
| ! | TAGCAAAATTGACGTATTTA+AGG | - | chr1_1:15232880-15232899 | None:intergenic | 25.0% |
| ! | TTCATTGTTGATCTATCTAA+TGG | + | chr1_1:15232905-15232924 | Msa0010170:intron | 25.0% |
| !!! | TTCTACTTTTAAATCTAAGG+TGG | - | chr1_1:15233066-15233085 | None:intergenic | 25.0% |
| ! | ACTCTGTGTAATAAAAAAGA+AGG | + | chr1_1:15233141-15233160 | Msa0010170:intron | 25.0% |
| !! | AATTTCAGCATCAATGTTTT+TGG | - | chr1_1:15233334-15233353 | None:intergenic | 25.0% |
| ! | TTAGTGGTGAAGATATAATA+TGG | + | chr1_1:15233559-15233578 | Msa0010170:CDS | 25.0% |
| ! | TAGTGGTGAAGATATAATAT+GGG | + | chr1_1:15233560-15233579 | Msa0010170:CDS | 25.0% |
| ! | GGGATGACAAAAAAAAAATA+TGG | + | chr1_1:15232492-15232511 | Msa0010170:intron | 25.0% |
| !!! | TTTTTAGTGTGAATCGAATT+CGG | - | chr1_1:15232620-15232639 | None:intergenic | 25.0% |
| !! | CTAAAAAAGATTTGAGATCT+TGG | + | chr1_1:15232633-15232652 | Msa0010170:intron | 25.0% |
| ! | TAGAAATAAAGTGAGAGAAA+AGG | + | chr1_1:15232830-15232849 | Msa0010170:intron | 25.0% |
| ! | AGCAAAATTGACGTATTTAA+GGG | - | chr1_1:15232879-15232898 | None:intergenic | 25.0% |
| ! | TAGCAAAATTGACGTATTTA+AGG | - | chr1_1:15232880-15232899 | None:intergenic | 25.0% |
| ! | TTCATTGTTGATCTATCTAA+TGG | + | chr1_1:15232905-15232924 | Msa0010170:intron | 25.0% |
| !!! | TTCTACTTTTAAATCTAAGG+TGG | - | chr1_1:15233066-15233085 | None:intergenic | 25.0% |
| ! | ACTCTGTGTAATAAAAAAGA+AGG | + | chr1_1:15233141-15233160 | Msa0010170:intron | 25.0% |
| !! | AATTTCAGCATCAATGTTTT+TGG | - | chr1_1:15233334-15233353 | None:intergenic | 25.0% |
| ! | TTAGTGGTGAAGATATAATA+TGG | + | chr1_1:15233559-15233578 | Msa0010170:CDS | 25.0% |
| ! | TAGTGGTGAAGATATAATAT+GGG | + | chr1_1:15233560-15233579 | Msa0010170:CDS | 25.0% |
| !!! | GTGCATCACTTTTTTTTTGA+AGG | + | chr1_1:15232396-15232415 | Msa0010170:intron | 30.0% |
| !!! | TTGTTAGCGATTTTTTACAC+TGG | + | chr1_1:15232433-15232452 | Msa0010170:intron | 30.0% |
| ! | TGTCTGAGGGTTATAAATTT+TGG | + | chr1_1:15232590-15232609 | Msa0010170:intron | 30.0% |
| ! | GTCTGAGGGTTATAAATTTT+GGG | + | chr1_1:15232591-15232610 | Msa0010170:intron | 30.0% |
| ! | TCTGAGGGTTATAAATTTTG+GGG | + | chr1_1:15232592-15232611 | Msa0010170:intron | 30.0% |
| AAATAAAGTGAGAGAAAAGG+TGG | + | chr1_1:15232833-15232852 | Msa0010170:intron | 30.0% | |
| AATAAAGTGAGAGAAAAGGT+GGG | + | chr1_1:15232834-15232853 | Msa0010170:intron | 30.0% | |
| GCAAAATTGACGTATTTAAG+GGG | - | chr1_1:15232878-15232897 | None:intergenic | 30.0% | |
| TGTCAATTATACGTTACGTT+CGG | + | chr1_1:15233110-15233129 | Msa0010170:intron | 30.0% | |
| ! | GGAGATTCATTGTTTTCATA+TGG | - | chr1_1:15233306-15233325 | None:intergenic | 30.0% |
| ATGAAAACAATGAATCTCCA+AGG | + | chr1_1:15233307-15233326 | Msa0010170:CDS | 30.0% | |
| ATTCTTGTCAAATTTCGGAT+GGG | - | chr1_1:15233402-15233421 | None:intergenic | 30.0% | |
| GCATGATTCTTGTCAAATTT+CGG | - | chr1_1:15233407-15233426 | None:intergenic | 30.0% | |
| GAAATTTGACAAGAATCATG+CGG | + | chr1_1:15233406-15233425 | Msa0010170:CDS | 30.0% | |
| AAAAATATCTCAAGATGCCA+AGG | + | chr1_1:15233449-15233468 | Msa0010170:CDS | 30.0% | |
| !!! | GTGCATCACTTTTTTTTTGA+AGG | + | chr1_1:15232396-15232415 | Msa0010170:intron | 30.0% |
| !!! | TTGTTAGCGATTTTTTACAC+TGG | + | chr1_1:15232433-15232452 | Msa0010170:intron | 30.0% |
| ! | TGTCTGAGGGTTATAAATTT+TGG | + | chr1_1:15232590-15232609 | Msa0010170:intron | 30.0% |
| ! | GTCTGAGGGTTATAAATTTT+GGG | + | chr1_1:15232591-15232610 | Msa0010170:intron | 30.0% |
| ! | TCTGAGGGTTATAAATTTTG+GGG | + | chr1_1:15232592-15232611 | Msa0010170:intron | 30.0% |
| AAATAAAGTGAGAGAAAAGG+TGG | + | chr1_1:15232833-15232852 | Msa0010170:intron | 30.0% | |
| AATAAAGTGAGAGAAAAGGT+GGG | + | chr1_1:15232834-15232853 | Msa0010170:intron | 30.0% | |
| GCAAAATTGACGTATTTAAG+GGG | - | chr1_1:15232878-15232897 | None:intergenic | 30.0% | |
| TGTCAATTATACGTTACGTT+CGG | + | chr1_1:15233110-15233129 | Msa0010170:intron | 30.0% | |
| ! | GGAGATTCATTGTTTTCATA+TGG | - | chr1_1:15233306-15233325 | None:intergenic | 30.0% |
| ATGAAAACAATGAATCTCCA+AGG | + | chr1_1:15233307-15233326 | Msa0010170:CDS | 30.0% | |
| ATTCTTGTCAAATTTCGGAT+GGG | - | chr1_1:15233402-15233421 | None:intergenic | 30.0% | |
| GCATGATTCTTGTCAAATTT+CGG | - | chr1_1:15233407-15233426 | None:intergenic | 30.0% | |
| GAAATTTGACAAGAATCATG+CGG | + | chr1_1:15233406-15233425 | Msa0010170:CDS | 30.0% | |
| AAAAATATCTCAAGATGCCA+AGG | + | chr1_1:15233449-15233468 | Msa0010170:CDS | 30.0% | |
| ! | GAACGGTTGTTGTTAAATGA+GGG | - | chr1_1:15232044-15232063 | None:intergenic | 35.0% |
| ! | TGAACGGTTGTTGTTAAATG+AGG | - | chr1_1:15232045-15232064 | None:intergenic | 35.0% |
| ! | TCTCAAGGCATTATTTGCTT+CGG | + | chr1_1:15232345-15232364 | Msa0010170:intron | 35.0% |
| TCGGAAAGAAAGATCTAACT+TGG | + | chr1_1:15232364-15232383 | Msa0010170:intron | 35.0% | |
| CGGAAAGAAAGATCTAACTT+GGG | + | chr1_1:15232365-15232384 | Msa0010170:intron | 35.0% | |
| CTTAACTACGTGCTTATGTT+TGG | + | chr1_1:15233254-15233273 | Msa0010170:intron | 35.0% | |
| TTTACCTCCAACAACAAATG+AGG | + | chr1_1:15233365-15233384 | Msa0010170:CDS | 35.0% | |
| GATTCTTGTCAAATTTCGGA+TGG | - | chr1_1:15233403-15233422 | None:intergenic | 35.0% | |
| !! | TGAGATATTTTTGCGTACGA+TGG | - | chr1_1:15233441-15233460 | None:intergenic | 35.0% |
| ATTGTGTGTGTCTGATTTCA+TGG | + | chr1_1:15233482-15233501 | Msa0010170:CDS | 35.0% | |
| TTGTGTGTGTCTGATTTCAT+GGG | + | chr1_1:15233483-15233502 | Msa0010170:CDS | 35.0% | |
| TGAAGATATAATATGGGCCA+TGG | + | chr1_1:15233566-15233585 | Msa0010170:CDS | 35.0% | |
| GAAGATATAATATGGGCCAT+GGG | + | chr1_1:15233567-15233586 | Msa0010170:CDS | 35.0% | |
| ! | GAACGGTTGTTGTTAAATGA+GGG | - | chr1_1:15232044-15232063 | None:intergenic | 35.0% |
| ! | TGAACGGTTGTTGTTAAATG+AGG | - | chr1_1:15232045-15232064 | None:intergenic | 35.0% |
| ! | TCTCAAGGCATTATTTGCTT+CGG | + | chr1_1:15232345-15232364 | Msa0010170:intron | 35.0% |
| TCGGAAAGAAAGATCTAACT+TGG | + | chr1_1:15232364-15232383 | Msa0010170:intron | 35.0% | |
| CGGAAAGAAAGATCTAACTT+GGG | + | chr1_1:15232365-15232384 | Msa0010170:intron | 35.0% | |
| CTTAACTACGTGCTTATGTT+TGG | + | chr1_1:15233254-15233273 | Msa0010170:intron | 35.0% | |
| TTTACCTCCAACAACAAATG+AGG | + | chr1_1:15233365-15233384 | Msa0010170:CDS | 35.0% | |
| GATTCTTGTCAAATTTCGGA+TGG | - | chr1_1:15233403-15233422 | None:intergenic | 35.0% | |
| !! | TGAGATATTTTTGCGTACGA+TGG | - | chr1_1:15233441-15233460 | None:intergenic | 35.0% |
| ATTGTGTGTGTCTGATTTCA+TGG | + | chr1_1:15233482-15233501 | Msa0010170:CDS | 35.0% | |
| TTGTGTGTGTCTGATTTCAT+GGG | + | chr1_1:15233483-15233502 | Msa0010170:CDS | 35.0% | |
| TGAAGATATAATATGGGCCA+TGG | + | chr1_1:15233566-15233585 | Msa0010170:CDS | 35.0% | |
| GAAGATATAATATGGGCCAT+GGG | + | chr1_1:15233567-15233586 | Msa0010170:CDS | 35.0% | |
| GGTGGGTGACAAAATAAACA+AGG | + | chr1_1:15232851-15232870 | Msa0010170:intron | 40.0% | |
| TCTAATGGTGTGAAGCTAAC+TGG | + | chr1_1:15232920-15232939 | Msa0010170:intron | 40.0% | |
| ACATCATCACTTGACGTTAG+TGG | - | chr1_1:15233017-15233036 | None:intergenic | 40.0% | |
| ! | TGTAGTCACCTTTTACATGC+TGG | + | chr1_1:15233036-15233055 | Msa0010170:intron | 40.0% |
| ATTTAGTCCGTTTGCAAGCA+GGG | + | chr1_1:15233277-15233296 | Msa0010170:intron | 40.0% | |
| !!! | GCATCAATGTTTTTGGTCCT+TGG | - | chr1_1:15233327-15233346 | None:intergenic | 40.0% |
| !! | AGTTCCTCATTTGTTGTTGG+AGG | - | chr1_1:15233372-15233391 | None:intergenic | 40.0% |
| !! | CACAGTTCCTCATTTGTTGT+TGG | - | chr1_1:15233375-15233394 | None:intergenic | 40.0% |
| ! | ACACAATTGTGTTGTTGCCT+TGG | - | chr1_1:15233469-15233488 | None:intergenic | 40.0% |
| GAGAGTCGAAAGATCATTAG+TGG | + | chr1_1:15233543-15233562 | Msa0010170:CDS | 40.0% | |
| ATATAATATGGGCCATGGGT+AGG | + | chr1_1:15233571-15233590 | Msa0010170:CDS | 40.0% | |
| TTAGGGTTTGAGGACTATGT+TGG | + | chr1_1:15233594-15233613 | Msa0010170:CDS | 40.0% | |
| !! | TTTTGGAGGAGAAGAGATAG+AGG | - | chr1_1:15233621-15233640 | None:intergenic | 40.0% |
| GGTGGGTGACAAAATAAACA+AGG | + | chr1_1:15232851-15232870 | Msa0010170:intron | 40.0% | |
| TCTAATGGTGTGAAGCTAAC+TGG | + | chr1_1:15232920-15232939 | Msa0010170:intron | 40.0% | |
| ACATCATCACTTGACGTTAG+TGG | - | chr1_1:15233017-15233036 | None:intergenic | 40.0% | |
| ! | TGTAGTCACCTTTTACATGC+TGG | + | chr1_1:15233036-15233055 | Msa0010170:intron | 40.0% |
| ATTTAGTCCGTTTGCAAGCA+GGG | + | chr1_1:15233277-15233296 | Msa0010170:intron | 40.0% | |
| !!! | GCATCAATGTTTTTGGTCCT+TGG | - | chr1_1:15233327-15233346 | None:intergenic | 40.0% |
| !! | AGTTCCTCATTTGTTGTTGG+AGG | - | chr1_1:15233372-15233391 | None:intergenic | 40.0% |
| !! | CACAGTTCCTCATTTGTTGT+TGG | - | chr1_1:15233375-15233394 | None:intergenic | 40.0% |
| ! | ACACAATTGTGTTGTTGCCT+TGG | - | chr1_1:15233469-15233488 | None:intergenic | 40.0% |
| GAGAGTCGAAAGATCATTAG+TGG | + | chr1_1:15233543-15233562 | Msa0010170:CDS | 40.0% | |
| ATATAATATGGGCCATGGGT+AGG | + | chr1_1:15233571-15233590 | Msa0010170:CDS | 40.0% | |
| TTAGGGTTTGAGGACTATGT+TGG | + | chr1_1:15233594-15233613 | Msa0010170:CDS | 40.0% | |
| !! | TTTTGGAGGAGAAGAGATAG+AGG | - | chr1_1:15233621-15233640 | None:intergenic | 40.0% |
| CAGAGCTTGATTGTGCTGAA+CGG | - | chr1_1:15232061-15232080 | None:intergenic | 45.0% | |
| GAGCAGATCTGCGTATACAA+TGG | + | chr1_1:15232671-15232690 | Msa0010170:intron | 45.0% | |
| GTGGCAAACCAGCATGTAAA+AGG | - | chr1_1:15233047-15233066 | None:intergenic | 45.0% | |
| GATTTAGTCCGTTTGCAAGC+AGG | + | chr1_1:15233276-15233295 | Msa0010170:intron | 45.0% | |
| !!! | CATGGTTGCGATAGTTTTGG+AGG | - | chr1_1:15233635-15233654 | None:intergenic | 45.0% |
| ! | CCTCATGGTTGCGATAGTTT+TGG | - | chr1_1:15233638-15233657 | None:intergenic | 45.0% |
| CCAAAACTATCGCAACCATG+AGG | + | chr1_1:15233635-15233654 | Msa0010170:CDS | 45.0% | |
| AACCATGAGGCTCAATTCAG+TGG | + | chr1_1:15233648-15233667 | Msa0010170:CDS | 45.0% | |
| AACTGCTCGTGGATTCAACA+TGG | + | chr1_1:15233677-15233696 | Msa0010170:CDS | 45.0% | |
| CTCGTGGATTCAACATGGAT+GGG | + | chr1_1:15233682-15233701 | Msa0010170:CDS | 45.0% | |
| TGGATTCAACATGGATGGGT+CGG | + | chr1_1:15233686-15233705 | Msa0010170:CDS | 45.0% | |
| CAGAGCTTGATTGTGCTGAA+CGG | - | chr1_1:15232061-15232080 | None:intergenic | 45.0% | |
| GAGCAGATCTGCGTATACAA+TGG | + | chr1_1:15232671-15232690 | Msa0010170:intron | 45.0% | |
| GTGGCAAACCAGCATGTAAA+AGG | - | chr1_1:15233047-15233066 | None:intergenic | 45.0% | |
| GATTTAGTCCGTTTGCAAGC+AGG | + | chr1_1:15233276-15233295 | Msa0010170:intron | 45.0% | |
| !!! | CATGGTTGCGATAGTTTTGG+AGG | - | chr1_1:15233635-15233654 | None:intergenic | 45.0% |
| ! | CCTCATGGTTGCGATAGTTT+TGG | - | chr1_1:15233638-15233657 | None:intergenic | 45.0% |
| CCAAAACTATCGCAACCATG+AGG | + | chr1_1:15233635-15233654 | Msa0010170:CDS | 45.0% | |
| AACCATGAGGCTCAATTCAG+TGG | + | chr1_1:15233648-15233667 | Msa0010170:CDS | 45.0% | |
| AACTGCTCGTGGATTCAACA+TGG | + | chr1_1:15233677-15233696 | Msa0010170:CDS | 45.0% | |
| CTCGTGGATTCAACATGGAT+GGG | + | chr1_1:15233682-15233701 | Msa0010170:CDS | 45.0% | |
| TGGATTCAACATGGATGGGT+CGG | + | chr1_1:15233686-15233705 | Msa0010170:CDS | 45.0% | |
| !! | AATAATAAATTAATTATTTG+AGG | + | chr1_1:15232779-15232798 | Msa0010170:intron | 5.0% |
| !! | AATAATAAATTAATTATTTG+AGG | + | chr1_1:15232779-15232798 | Msa0010170:intron | 5.0% |
| CGTTCAGCACAATCAAGCTC+TGG | + | chr1_1:15232059-15232078 | Msa0010170:CDS | 50.0% | |
| ATGGACTCCCTGCTTGCAAA+CGG | - | chr1_1:15233287-15233306 | None:intergenic | 50.0% | |
| GCATTTCTCAACAGCCTCAG+TGG | - | chr1_1:15233517-15233536 | None:intergenic | 50.0% | |
| ATATGGGCCATGGGTAGGTT+AGG | + | chr1_1:15233576-15233595 | Msa0010170:CDS | 50.0% | |
| TATGGGCCATGGGTAGGTTA+GGG | + | chr1_1:15233577-15233596 | Msa0010170:CDS | 50.0% | |
| CTCAAACCCTAACCTACCCA+TGG | - | chr1_1:15233586-15233605 | None:intergenic | 50.0% | |
| CATGGGTAGGTTAGGGTTTG+AGG | + | chr1_1:15233584-15233603 | Msa0010170:CDS | 50.0% | |
| TGCCACTGAATTGAGCCTCA+TGG | - | chr1_1:15233653-15233672 | None:intergenic | 50.0% | |
| GCTCGTGGATTCAACATGGA+TGG | + | chr1_1:15233681-15233700 | Msa0010170:CDS | 50.0% | |
| GGATTCAACATGGATGGGTC+GGG | + | chr1_1:15233687-15233706 | Msa0010170:CDS | 50.0% | |
| CGTTCAGCACAATCAAGCTC+TGG | + | chr1_1:15232059-15232078 | Msa0010170:CDS | 50.0% | |
| ATGGACTCCCTGCTTGCAAA+CGG | - | chr1_1:15233287-15233306 | None:intergenic | 50.0% | |
| GCATTTCTCAACAGCCTCAG+TGG | - | chr1_1:15233517-15233536 | None:intergenic | 50.0% | |
| ATATGGGCCATGGGTAGGTT+AGG | + | chr1_1:15233576-15233595 | Msa0010170:CDS | 50.0% | |
| TATGGGCCATGGGTAGGTTA+GGG | + | chr1_1:15233577-15233596 | Msa0010170:CDS | 50.0% | |
| CTCAAACCCTAACCTACCCA+TGG | - | chr1_1:15233586-15233605 | None:intergenic | 50.0% | |
| CATGGGTAGGTTAGGGTTTG+AGG | + | chr1_1:15233584-15233603 | Msa0010170:CDS | 50.0% | |
| TGCCACTGAATTGAGCCTCA+TGG | - | chr1_1:15233653-15233672 | None:intergenic | 50.0% | |
| GCTCGTGGATTCAACATGGA+TGG | + | chr1_1:15233681-15233700 | Msa0010170:CDS | 50.0% | |
| GGATTCAACATGGATGGGTC+GGG | + | chr1_1:15233687-15233706 | Msa0010170:CDS | 50.0% | |
| CATGGGCATCATCACCACTG+AGG | + | chr1_1:15233500-15233519 | Msa0010170:CDS | 55.0% | |
| CATGGGCATCATCACCACTG+AGG | + | chr1_1:15233500-15233519 | Msa0010170:CDS | 55.0% | |
| AGTGGCACGTCAACTGCTCG+TGG | + | chr1_1:15233666-15233685 | Msa0010170:CDS | 60.0% | |
| AACATGGATGGGTCGGGTGC+TGG | + | chr1_1:15233693-15233712 | Msa0010170:CDS | 60.0% | |
| GGTGGCTCGAGCAGTGGTAA+TGG | + | chr1_1:15233714-15233733 | Msa0010170:CDS | 60.0% | |
| AGTGGCACGTCAACTGCTCG+TGG | + | chr1_1:15233666-15233685 | Msa0010170:CDS | 60.0% | |
| AACATGGATGGGTCGGGTGC+TGG | + | chr1_1:15233693-15233712 | Msa0010170:CDS | 60.0% | |
| GGTGGCTCGAGCAGTGGTAA+TGG | + | chr1_1:15233714-15233733 | Msa0010170:CDS | 60.0% | |
| !! | ATGGATGGGTCGGGTGCTGG+TGG | + | chr1_1:15233696-15233715 | Msa0010170:CDS | 65.0% |
| !! | ATGGATGGGTCGGGTGCTGG+TGG | + | chr1_1:15233696-15233715 | Msa0010170:CDS | 65.0% |
| !! | GGTGCTGGTGGCTCGAGCAG+TGG | + | chr1_1:15233708-15233727 | Msa0010170:CDS | 70.0% |
| !! | GGTGCTGGTGGCTCGAGCAG+TGG | + | chr1_1:15233708-15233727 | Msa0010170:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 15232026 | 15233746 | 15232026 | ID=Msa0010170;Name=Msa0010170 |
| chr1_1 | mRNA | 15232026 | 15233746 | 15232026 | ID=Msa0010170-mRNA-1;Parent=Msa0010170;Name=Msa0010170-mRNA-1;_AED=0.40;_eAED=0.40;_QI=0|0|0|0.5|1|1|2|0|172 |
| chr1_1 | exon | 15232026 | 15232080 | 15232026 | ID=Msa0010170-mRNA-1:exon:5610;Parent=Msa0010170-mRNA-1 |
| chr1_1 | exon | 15233283 | 15233746 | 15233283 | ID=Msa0010170-mRNA-1:exon:5611;Parent=Msa0010170-mRNA-1 |
| chr1_1 | CDS | 15232026 | 15232080 | 15232026 | ID=Msa0010170-mRNA-1:cds;Parent=Msa0010170-mRNA-1 |
| chr1_1 | CDS | 15233283 | 15233746 | 15233283 | ID=Msa0010170-mRNA-1:cds;Parent=Msa0010170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
