AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0010750

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0010750 MtrunA17_Chr3g0117091 81.605 299 31 9 1 282 1 292 8.82e-165 461
Msa0010750 MtrunA17_Chr1g0211161 69.149 282 21 5 3 283 4 220 1.61e-124 354
Msa0010750 MtrunA17_Chr4g0058631 55.197 279 90 8 1 263 1 260 4.83e-91 274
Msa0010750 MtrunA17_Chr7g0270891 74.820 139 35 0 1 139 1 139 2.68e-73 229
Msa0010750 MtrunA17_Chr1g0193371 79.845 129 26 0 1 129 1 129 4.51e-73 228
Msa0010750 MtrunA17_Chr1g0193801 69.536 151 42 1 1 147 1 151 5.38e-71 224
Msa0010750 MtrunA17_Chr7g0271241 78.030 132 29 0 1 132 1 132 7.51e-66 210
Msa0010750 MtrunA17_Chr8g0342521 73.387 124 33 0 1 124 1 124 3.58e-63 202
Msa0010750 MtrunA17_Chr2g0330041 72.800 125 34 0 1 125 1 125 3.83e-63 204
Msa0010750 MtrunA17_Chr8g0342541 72.581 124 34 0 1 124 1 124 7.68e-63 201
Msa0010750 MtrunA17_Chr2g0309911 68.217 129 40 1 1 129 1 128 3.95e-61 196
Msa0010750 MtrunA17_Chr8g0342481 74.576 118 29 1 1 117 1 118 6.49e-58 190
Msa0010750 MtrunA17_Chr3g0131121 62.016 129 49 0 1 129 1 129 1.14e-57 186
Msa0010750 MtrunA17_Chr5g0435101 64.706 119 42 0 9 127 8 126 2.00e-57 183
Msa0010750 MtrunA17_Chr5g0395281 61.029 136 53 0 1 136 1 136 4.73e-57 185
Msa0010750 MtrunA17_Chr5g0434571 53.757 173 76 2 1 169 37 209 8.78e-57 186
Msa0010750 MtrunA17_Chr8g0385321 62.791 129 48 0 1 129 1 129 1.36e-56 184
Msa0010750 MtrunA17_Chr4g0037141 50.000 176 79 2 1 167 1 176 1.38e-56 183
Msa0010750 MtrunA17_Chr4g0057031 62.791 129 48 0 1 129 1 129 1.76e-56 182
Msa0010750 MtrunA17_Chr8g0387421 67.227 119 39 0 1 119 1 119 2.03e-56 184
Msa0010750 MtrunA17_Chr4g0039971 58.824 136 56 0 1 136 2 137 4.28e-56 184
Msa0010750 MtrunA17_Chr4g0032401 58.278 151 60 1 11 161 16 163 4.96e-56 183
Msa0010750 MtrunA17_Chr3g0110351 64.122 131 47 0 1 131 1 131 5.08e-56 182
Msa0010750 MtrunA17_Chr6g0470971 42.373 295 113 12 9 281 11 270 6.62e-56 181
Msa0010750 MtrunA17_Chr3g0088461 74.074 108 28 0 9 116 19 126 1.47e-54 180
Msa0010750 MtrunA17_Chr2g0328771 74.286 105 27 0 12 116 20 124 1.58e-54 179
Msa0010750 MtrunA17_Chr3g0115821 58.824 136 56 0 1 136 1 136 2.38e-54 179
Msa0010750 MtrunA17_Chr7g0217741 59.859 142 55 1 1 142 1 140 2.62e-54 178
Msa0010750 MtrunA17_Chr7g0228891 45.918 196 95 3 1 185 1 196 3.80e-54 177
Msa0010750 MtrunA17_Chr6g0452271 58.140 129 54 0 1 129 1 129 4.01e-54 179
Msa0010750 MtrunA17_Chr1g0203441 70.588 119 34 1 9 127 10 127 4.87e-54 176
Msa0010750 MtrunA17_Chr5g0397231 69.091 110 34 0 1 110 1 110 8.34e-54 178
Msa0010750 MtrunA17_Chr8g0349261 51.667 180 72 3 9 185 10 177 1.15e-53 176
Msa0010750 MtrunA17_Chr4g0042671 63.281 128 47 0 1 128 1 128 1.33e-53 179
Msa0010750 MtrunA17_Chr6g0453471 60.294 136 52 1 1 136 1 134 2.81e-53 177
Msa0010750 MtrunA17_Chr2g0281071 63.248 117 43 0 12 128 13 129 4.79e-53 176
Msa0010750 MtrunA17_Chr4g0048511 39.179 268 126 5 12 247 13 275 2.08e-52 175
Msa0010750 MtrunA17_Chr5g0410961 58.594 128 53 0 1 128 1 128 2.59e-52 174
Msa0010750 MtrunA17_Chr2g0323411 58.015 131 55 0 1 131 1 131 3.96e-52 173
Msa0010750 MtrunA17_Chr2g0323351 61.864 118 45 0 1 118 1 118 1.13e-51 169
Msa0010750 MtrunA17_Chr4g0044421 59.524 126 51 0 1 126 1 126 1.54e-51 167
Msa0010750 MtrunA17_Chr3g0103281 60.465 129 51 0 1 129 1 129 3.08e-51 171
Msa0010750 MtrunA17_Chr3g0121241 62.810 121 45 0 9 129 39 159 5.72e-51 169
Msa0010750 MtrunA17_Chr1g0203411 64.815 108 38 0 9 116 9 116 1.68e-49 165
Msa0010750 MtrunA17_Chr7g0274581 58.678 121 50 0 1 121 1 121 1.23e-48 160
Msa0010750 MtrunA17_Chr4g0022931 60.185 108 43 0 9 116 10 117 2.74e-48 162
Msa0010750 MtrunA17_Chr4g0022901 59.633 109 44 0 9 117 10 118 2.84e-47 159
Msa0010750 MtrunA17_Chr7g0261281 45.109 184 88 3 1 184 1 171 3.88e-47 159
Msa0010750 MtrunA17_Chr4g0070641 46.857 175 83 3 1 172 1 168 6.64e-47 155
Msa0010750 MtrunA17_Chr5g0417821 59.829 117 47 0 12 128 7 123 8.95e-47 158
Msa0010750 MtrunA17_Chr4g0070611 47.531 162 70 2 1 147 1 162 1.31e-46 158
Msa0010750 MtrunA17_Chr7g0217221 48.276 174 81 2 1 174 1 165 2.54e-46 156
Msa0010750 MtrunA17_Chr1g0187761 62.069 116 44 0 1 116 1 116 3.47e-46 155
Msa0010750 MtrunA17_Chr4g0022911 59.434 106 43 0 12 117 13 118 5.05e-46 156
Msa0010750 MtrunA17_Chr1g0151941 50.365 137 64 3 1 136 1 134 2.12e-44 151
Msa0010750 MtrunA17_Chr1g0167691 57.265 117 50 0 1 117 1 117 2.76e-44 150
Msa0010750 MtrunA17_Chr1g0152011 34.420 276 141 6 1 252 1 260 4.70e-44 152
Msa0010750 MtrunA17_Chr4g0068061 61.207 116 45 0 1 116 1 116 5.55e-44 152
Msa0010750 MtrunA17_Chr8g0343831 60.000 110 44 0 10 119 6 115 5.56e-44 150
Msa0010750 MtrunA17_Chr1g0167661 58.120 117 49 0 1 117 1 117 1.09e-43 149
Msa0010750 MtrunA17_Chr5g0400821 47.682 151 78 1 1 150 1 151 4.09e-43 149
Msa0010750 MtrunA17_Chr1g0194951 62.069 116 44 0 1 116 1 116 4.96e-43 150
Msa0010750 MtrunA17_Chr8g0346561 56.780 118 51 0 1 118 1 118 5.13e-43 149
Msa0010750 MtrunA17_Chr4g0060721 53.285 137 58 1 1 131 2 138 7.30e-43 149
Msa0010750 MtrunA17_Chr7g0275911 56.303 119 52 0 1 119 1 119 1.42e-42 146
Msa0010750 MtrunA17_Chr3g0092401 58.475 118 49 0 1 118 2 119 1.71e-42 147
Msa0010750 MtrunA17_Chr8g0342531 68.750 96 30 0 1 96 1 96 1.96e-42 143
Msa0010750 MtrunA17_Chr4g0028311 57.627 118 49 1 1 117 1 118 2.20e-42 148
Msa0010750 MtrunA17_Chr7g0247131 55.118 127 56 1 43 168 9 135 4.94e-42 145
Msa0010750 MtrunA17_Chr8g0342511 73.563 87 23 0 1 87 1 87 5.94e-42 139
Msa0010750 MtrunA17_Chr7g0254411 55.556 126 54 1 1 124 1 126 6.57e-42 147
Msa0010750 MtrunA17_Chr4g0055981 57.522 113 48 0 3 115 46 158 6.79e-42 144
Msa0010750 MtrunA17_Chr2g0311221 61.765 102 39 0 9 110 11 112 7.13e-42 146
Msa0010750 MtrunA17_Chr3g0135311 55.085 118 52 1 1 117 1 118 3.20e-41 145
Msa0010750 MtrunA17_Chr1g0186061 58.879 107 44 0 9 115 17 123 4.03e-41 142
Msa0010750 MtrunA17_Chr7g0264641 55.085 118 52 1 1 117 1 118 6.33e-41 142
Msa0010750 MtrunA17_Chr1g0168661 56.250 112 49 0 4 115 13 124 1.19e-40 141
Msa0010750 MtrunA17_Chr4g0022891 54.867 113 51 0 1 113 1 113 2.34e-40 140
Msa0010750 MtrunA17_Chr4g0022881 47.518 141 67 1 1 134 1 141 3.35e-40 139
Msa0010750 MtrunA17_Chr6g0453211 46.552 174 83 2 1 174 1 164 9.49e-40 140
Msa0010750 MtrunA17_Chr3g0099131 57.273 110 46 1 12 121 41 149 1.19e-39 145
Msa0010750 MtrunA17_Chr2g0327351 56.757 111 47 1 1 110 1 111 2.54e-39 139
Msa0010750 MtrunA17_Chr1g0180391 38.725 204 112 5 12 209 19 215 2.80e-39 137
Msa0010750 MtrunA17_Chr8g0342471 67.391 92 29 1 1 91 1 92 4.57e-39 134
Msa0010750 MtrunA17_Chr1g0194301 53.153 111 52 0 12 122 33 143 6.88e-39 137
Msa0010750 MtrunA17_Chr6g0450101 56.604 106 46 0 11 116 13 118 7.24e-39 135
Msa0010750 MtrunA17_Chr7g0228231 54.464 112 51 0 5 116 7 118 1.16e-38 135
Msa0010750 MtrunA17_Chr2g0327821 46.512 129 67 1 8 134 2 130 1.30e-38 135
Msa0010750 MtrunA17_Chr4g0054391 56.364 110 47 1 1 109 1 110 1.36e-38 137
Msa0010750 MtrunA17_Chr8g0342461 66.304 92 30 1 1 91 1 92 1.54e-38 132
Msa0010750 MtrunA17_Chr8g0354661 57.692 104 44 0 12 115 37 140 2.95e-38 141
Msa0010750 MtrunA17_Chr1g0154031 55.769 104 46 0 12 115 76 179 5.00e-38 138
Msa0010750 MtrunA17_Chr3g0080861 56.731 104 45 0 12 115 37 140 5.41e-38 140
Msa0010750 MtrunA17_Chr5g0434831 55.660 106 47 0 12 117 7 112 1.51e-37 131
Msa0010750 MtrunA17_Chr1g0194291 56.731 104 45 0 12 115 21 124 1.96e-37 133
Msa0010750 MtrunA17_Chr7g0240821 59.000 100 41 0 17 116 6 105 2.11e-37 132
Msa0010750 MtrunA17_Chr4g0072751 53.153 111 51 1 1 110 1 111 3.04e-37 135
Msa0010750 MtrunA17_Chr1g0209661 49.580 119 60 0 9 127 24 142 3.06e-37 134
Msa0010750 MtrunA17_Chr7g0269831 58.621 116 48 0 1 116 1 116 6.16e-37 134
Msa0010750 MtrunA17_Chr2g0322521 54.386 114 52 0 2 115 19 132 1.03e-36 134
Msa0010750 MtrunA17_Chr5g0434931 50.000 114 57 0 8 121 31 144 1.12e-36 132
Msa0010750 MtrunA17_Chr6g0487491 50.794 126 53 2 1 117 1 126 5.86e-36 129
Msa0010750 MtrunA17_Chr5g0434911 52.778 108 51 0 12 119 21 128 1.64e-35 129
Msa0010750 MtrunA17_Chr7g0220341 44.156 154 68 2 12 163 25 162 1.82e-35 128
Msa0010750 MtrunA17_Chr4g0030881 50.000 114 50 1 13 119 8 121 5.36e-35 127
Msa0010750 MtrunA17_Chr8g0360111 55.446 101 45 0 12 112 25 125 5.86e-35 127
Msa0010750 MtrunA17_Chr1g0192411 44.218 147 76 1 1 141 1 147 9.87e-35 129
Msa0010750 MtrunA17_Chr7g0228991 50.893 112 55 0 8 119 25 136 1.09e-34 126
Msa0010750 MtrunA17_Chr5g0434841 52.830 106 50 0 12 117 20 125 1.11e-34 127
Msa0010750 MtrunA17_Chr4g0068921 54.630 108 48 1 12 119 24 130 1.06e-32 119
Msa0010750 MtrunA17_Chr2g0323321 62.963 81 30 0 12 92 11 91 1.06e-32 116
Msa0010750 MtrunA17_Chr8g0334881 50.000 112 55 1 4 114 2 113 1.48e-32 122
Msa0010750 MtrunA17_Chr5g0441141 33.188 229 128 7 13 234 13 223 2.86e-32 120
Msa0010750 MtrunA17_Chr5g0440781 49.107 112 55 2 13 123 13 123 9.65e-32 116
Msa0010750 MtrunA17_Chr2g0293911 54.369 103 47 0 12 114 24 126 1.05e-31 120
Msa0010750 MtrunA17_Chr3g0093811 60.920 87 34 0 43 129 13 99 1.89e-31 117
Msa0010750 MtrunA17_Chr5g0440761 32.895 228 128 7 13 233 13 222 2.15e-31 117
Msa0010750 MtrunA17_Chr5g0441131 50.000 112 54 2 13 123 10 120 2.28e-31 115
Msa0010750 MtrunA17_Chr4g0042611 59.091 88 36 0 1 88 1 88 3.15e-31 112
Msa0010750 MtrunA17_Chr5g0395221 61.250 80 31 0 9 88 9 88 6.45e-30 108
Msa0010750 MtrunA17_Chr4g0013361 50.000 104 51 1 12 114 10 113 1.73e-29 113
Msa0010750 MtrunA17_Chr4g0008551 52.427 103 46 2 14 115 38 138 1.45e-28 112
Msa0010750 MtrunA17_Chr3g0099141 55.422 83 37 0 12 94 40 122 3.45e-28 105
Msa0010750 MtrunA17_Chr5g0401731 47.863 117 58 2 14 129 15 129 1.28e-27 108
Msa0010750 MtrunA17_Chr2g0294811 55.435 92 41 0 1 92 1 92 2.98e-27 102
Msa0010750 MtrunA17_Chr7g0238631 43.448 145 74 4 8 146 107 249 3.84e-27 110
Msa0010750 MtrunA17_Chr5g0429661 45.714 105 54 2 12 115 120 222 4.56e-27 108
Msa0010750 MtrunA17_Chr4g0053431 50.000 102 50 1 14 115 5 105 1.05e-26 105
Msa0010750 MtrunA17_Chr4g0058991 39.669 121 68 3 2 119 195 313 2.13e-26 107
Msa0010750 MtrunA17_Chr7g0229131 38.732 142 81 2 43 181 3 141 2.23e-26 102
Msa0010750 MtrunA17_Chr7g0229101 61.972 71 27 0 43 113 3 73 3.83e-26 102
Msa0010750 MtrunA17_Chr3g0133601 49.020 102 51 1 14 115 37 137 1.17e-25 101
Msa0010750 MtrunA17_Chr6g0454921 48.544 103 50 2 14 115 15 115 2.18e-25 100
Msa0010750 MtrunA17_Chr3g0117511 40.496 121 67 3 2 119 169 287 2.21e-25 104
Msa0010750 MtrunA17_Chr3g0139671 45.455 110 57 2 8 116 79 186 4.03e-25 105
Msa0010750 MtrunA17_Chr3g0139671 32.407 108 71 2 14 120 33 139 7.69e-11 62.8
Msa0010750 MtrunA17_Chr5g0434901 56.338 71 31 0 43 113 4 74 1.08e-24 95.9
Msa0010750 MtrunA17_Chr4g0042501 35.948 153 84 4 14 165 105 244 4.13e-24 100
Msa0010750 MtrunA17_Chr1g0157731 44.545 110 58 2 8 116 85 192 4.66e-24 102
Msa0010750 MtrunA17_Chr6g0480581 43.137 102 55 2 14 114 4 103 7.32e-24 97.1
Msa0010750 MtrunA17_Chr5g0417621 42.727 110 60 2 11 119 131 238 9.19e-24 100
Msa0010750 MtrunA17_Chr6g0460661 44.330 97 51 2 14 109 16 110 1.42e-22 91.7
Msa0010750 MtrunA17_Chr7g0228531 38.679 106 63 2 14 119 220 323 7.22e-22 94.7
Msa0010750 MtrunA17_Chr6g0453751 50.538 93 37 2 12 95 20 112 8.06e-22 88.6
Msa0010750 MtrunA17_Chr5g0437321 46.000 100 51 2 14 112 19 116 2.46e-21 91.3
Msa0010750 MtrunA17_Chr3g0125801 43.925 107 57 2 14 119 16 120 5.09e-21 90.5
Msa0010750 MtrunA17_Chr7g0228401 45.977 87 46 1 25 111 290 375 1.67e-20 90.9
Msa0010750 MtrunA17_Chr5g0425591 45.238 84 45 1 13 95 10 93 8.89e-20 82.0
Msa0010750 MtrunA17_Chr6g0460671 40.777 103 58 2 14 115 99 199 9.06e-20 87.8
Msa0010750 MtrunA17_Chr7g0254261 32.338 201 120 6 14 208 89 279 1.37e-19 87.4
Msa0010750 MtrunA17_Chr1g0177901 45.455 88 44 2 24 111 7 90 2.83e-19 84.0
Msa0010750 MtrunA17_Chr5g0397841 42.000 100 55 2 12 110 108 205 3.69e-19 87.0
Msa0010750 MtrunA17_Chr7g0238651 32.886 149 86 5 17 152 10 157 1.79e-18 84.3
Msa0010750 MtrunA17_Chr7g0228481 38.182 110 63 3 14 120 220 327 2.68e-18 84.3
Msa0010750 MtrunA17_Chr7g0233061 31.973 147 73 4 14 145 180 314 4.06e-17 80.5
Msa0010750 MtrunA17_Chr5g0395231 66.667 51 17 0 78 128 5 55 5.28e-17 78.6
Msa0010750 MtrunA17_Chr3g0145551 71.053 38 11 0 92 129 2 39 9.96e-14 65.5
Msa0010750 MtrunA17_Chr5g0416341 34.343 99 64 1 17 115 29 126 1.02e-13 70.9
Msa0010750 MtrunA17_Chr8g0362231 35.849 106 66 2 17 122 25 128 1.66e-13 70.1
Msa0010750 MtrunA17_Chr1g0193901 51.667 60 28 1 10 68 9 68 2.50e-13 65.1
Msa0010750 MtrunA17_Chr1g0193891 51.667 60 28 1 10 68 9 68 2.50e-13 65.1
Msa0010750 MtrunA17_Chr1g0193871 51.667 60 28 1 10 68 9 68 2.50e-13 65.1
Msa0010750 MtrunA17_Chr1g0193881 51.667 60 28 1 10 68 9 68 2.50e-13 65.1
Msa0010750 MtrunA17_Chr4g0042621 70.000 40 12 0 89 128 15 54 4.06e-13 68.6
Msa0010750 MtrunA17_Chr5g0434871 56.818 44 19 0 74 117 2 45 9.53e-13 62.4
Msa0010750 MtrunA17_Chr2g0322831 58.537 41 17 0 70 110 34 74 1.96e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0010750 AT5G26660.1 80.451 133 26 0 1 133 1 133 1.90e-76 237
Msa0010750 AT1G57560.1 51.653 242 109 3 1 234 1 242 1.03e-73 229
Msa0010750 AT1G57560.2 77.444 133 30 0 1 133 1 133 5.45e-73 225
Msa0010750 AT1G09540.1 60.638 188 63 3 1 185 1 180 1.46e-71 225
Msa0010750 AT4G01680.3 72.727 143 38 1 1 143 1 142 3.44e-71 219
Msa0010750 AT4G01680.1 72.727 143 38 1 1 143 1 142 5.14e-70 220
Msa0010750 AT4G01680.2 67.097 155 38 2 1 143 1 154 2.02e-66 211
Msa0010750 AT3G13890.2 76.068 117 28 0 1 117 1 117 3.39e-61 198
Msa0010750 AT3G12720.1 68.293 123 39 0 4 126 14 136 6.49e-61 196
Msa0010750 AT5G16600.1 54.023 174 78 2 1 174 1 172 2.13e-58 190
Msa0010750 AT3G13890.1 70.635 126 28 1 1 117 1 126 3.95e-58 190
Msa0010750 AT1G66230.1 60.140 143 53 1 1 143 1 139 1.96e-57 186
Msa0010750 AT1G63910.1 62.222 135 51 0 1 135 1 135 2.24e-57 188
Msa0010750 AT4G22680.1 59.722 144 58 0 1 144 1 144 2.74e-57 185
Msa0010750 AT4G34990.1 62.016 129 49 0 1 129 1 129 4.06e-57 185
Msa0010750 AT4G38620.1 48.521 169 84 1 1 169 1 166 1.25e-56 184
Msa0010750 AT5G65230.1 62.879 132 49 0 1 132 1 132 1.38e-56 184
Msa0010750 AT5G10280.1 62.500 128 48 0 1 128 1 128 7.70e-56 183
Msa0010750 AT4G12350.1 62.016 129 49 0 1 129 1 129 1.20e-55 181
Msa0010750 AT2G16720.1 55.102 147 64 1 1 147 1 145 1.90e-55 180
Msa0010750 AT1G74430.1 63.281 128 47 0 1 128 1 128 2.84e-55 180
Msa0010750 AT4G05100.1 62.500 120 45 0 9 128 10 129 8.54e-55 180
Msa0010750 AT4G21440.1 59.542 131 53 0 1 131 1 131 1.37e-54 181
Msa0010750 AT3G02940.2 59.375 128 52 0 1 128 1 128 2.45e-54 179
Msa0010750 AT5G12870.1 73.394 109 29 0 10 118 16 124 3.20e-54 177
Msa0010750 AT5G61420.2 60.465 129 51 0 1 129 1 129 4.58e-54 179
Msa0010750 AT3G02940.1 59.375 128 52 0 1 128 1 128 4.58e-54 178
Msa0010750 AT3G02940.3 59.375 128 52 0 1 128 1 128 4.58e-54 178
Msa0010750 AT5G15310.4 62.500 128 48 0 1 128 1 128 5.44e-54 176
Msa0010750 AT1G22640.1 56.618 136 57 1 1 136 1 134 9.00e-54 176
Msa0010750 AT5G54230.1 61.069 131 51 0 1 131 1 131 1.33e-53 177
Msa0010750 AT3G61250.1 61.240 129 50 0 1 129 1 129 1.61e-53 176
Msa0010750 AT5G15310.1 62.500 128 48 0 1 128 1 128 1.65e-53 177
Msa0010750 AT5G15310.2 62.500 128 48 0 1 128 1 128 1.68e-53 177
Msa0010750 AT3G01140.2 51.685 178 74 2 1 178 1 166 1.70e-53 177
Msa0010750 AT5G14340.1 49.444 180 86 3 1 178 13 189 2.17e-53 175
Msa0010750 AT5G07700.1 58.140 129 54 0 1 129 1 129 4.10e-53 176
Msa0010750 AT5G07700.2 58.140 129 54 0 1 129 1 129 4.10e-53 176
Msa0010750 AT3G08500.1 74.074 108 28 0 9 116 27 134 4.96e-53 176
Msa0010750 AT1G34670.1 60.938 128 50 0 1 128 1 128 5.38e-53 177
Msa0010750 AT5G16770.4 58.594 128 53 0 1 128 1 128 9.71e-53 175
Msa0010750 AT5G16770.3 58.594 128 53 0 1 128 1 128 9.71e-53 175
Msa0010750 AT4G09460.1 58.209 134 54 1 1 134 1 132 1.23e-52 172
Msa0010750 AT3G01140.1 52.941 170 68 2 9 178 52 209 1.52e-52 176
Msa0010750 AT5G16770.1 58.594 128 53 0 1 128 1 128 1.72e-52 175
Msa0010750 AT5G16770.2 58.594 128 53 0 1 128 1 128 1.72e-52 175
Msa0010750 AT4G28110.1 57.031 128 55 0 1 128 1 128 2.13e-52 173
Msa0010750 AT4G17785.2 61.417 127 49 0 10 136 11 137 2.13e-52 175
Msa0010750 AT4G17785.1 61.417 127 49 0 10 136 11 137 2.86e-52 175
Msa0010750 AT5G56110.1 60.465 129 51 0 1 129 1 129 2.89e-52 174
Msa0010750 AT5G07690.1 58.915 129 53 0 1 129 1 129 4.42e-52 174
Msa0010750 AT5G60890.1 56.589 129 56 0 1 129 1 129 4.77e-52 172
Msa0010750 AT3G13540.1 56.738 141 61 0 9 149 20 160 6.89e-52 171
Msa0010750 AT1G18710.1 57.692 130 55 0 1 130 1 130 1.49e-51 170
Msa0010750 AT1G35515.1 57.692 130 55 0 1 130 1 130 3.47e-51 167
Msa0010750 AT3G48920.1 61.111 126 47 2 9 132 15 140 4.67e-50 166
Msa0010750 AT1G74080.1 56.489 131 57 0 1 131 1 131 5.53e-50 168
Msa0010750 AT5G62320.1 50.000 158 71 2 12 162 13 169 5.54e-50 166
Msa0010750 AT3G28470.1 61.240 129 50 0 1 129 1 129 7.14e-50 167
Msa0010750 AT1G18570.1 60.169 118 47 0 12 129 13 130 7.62e-50 168
Msa0010750 AT4G25560.1 66.055 109 37 0 10 118 8 116 1.41e-48 163
Msa0010750 AT5G26660.2 80.899 89 17 0 45 133 14 102 1.59e-48 164
Msa0010750 AT2G31180.1 61.017 118 46 0 1 118 1 118 1.74e-48 162
Msa0010750 AT5G52260.1 64.407 118 42 0 1 118 1 118 3.22e-48 162
Msa0010750 AT1G06180.1 62.069 116 44 0 1 116 1 116 2.13e-47 159
Msa0010750 AT3G12820.1 63.063 111 41 0 9 119 11 121 3.08e-46 155
Msa0010750 AT5G35550.1 38.800 250 112 5 9 254 11 223 3.67e-46 156
Msa0010750 AT1G56160.1 64.815 108 38 0 9 116 11 118 4.55e-46 157
Msa0010750 AT1G79180.1 62.727 110 41 0 9 118 11 120 1.43e-45 155
Msa0010750 AT1G16490.1 41.150 226 114 4 9 230 11 221 2.87e-45 154
Msa0010750 AT3G23250.1 57.759 116 49 0 1 116 1 116 1.06e-44 153
Msa0010750 AT5G14750.1 60.577 104 41 0 13 116 17 120 1.83e-44 150
Msa0010750 AT3G62610.1 60.345 116 46 0 1 116 1 116 7.97e-44 152
Msa0010750 AT5G40330.1 57.407 108 46 0 9 116 9 116 3.46e-43 147
Msa0010750 AT2G47460.1 60.345 116 46 0 1 116 1 116 4.88e-43 151
Msa0010750 AT5G49330.1 53.623 138 63 1 1 137 1 138 8.53e-43 150
Msa0010750 AT3G47600.1 59.322 118 48 0 1 118 1 118 9.15e-43 149
Msa0010750 AT3G27920.1 55.556 108 48 0 10 117 12 119 1.25e-42 146
Msa0010750 AT5G62470.2 60.169 118 47 0 1 118 1 118 1.37e-42 149
Msa0010750 AT5G65790.1 55.833 120 52 1 1 119 1 120 1.43e-42 150
Msa0010750 AT1G74650.1 58.974 117 48 0 1 117 1 117 1.79e-42 149
Msa0010750 AT5G57620.1 55.932 118 51 1 1 117 1 118 2.50e-42 148
Msa0010750 AT1G08810.1 57.377 122 52 0 1 122 1 122 3.73e-42 146
Msa0010750 AT3G49690.1 55.833 120 52 1 1 119 1 120 5.00e-42 147
Msa0010750 AT5G23000.1 56.780 118 50 1 1 117 1 118 5.05e-42 147
Msa0010750 AT5G52600.1 50.000 134 58 1 9 133 9 142 9.16e-42 143
Msa0010750 AT3G28910.1 55.814 129 55 1 1 129 1 127 9.43e-42 146
Msa0010750 AT3G01530.1 58.095 105 44 0 12 116 25 129 1.91e-41 142
Msa0010750 AT5G62470.1 60.169 118 46 1 1 118 1 117 7.82e-41 145
Msa0010750 AT4G13480.1 53.077 130 51 1 8 137 2 121 1.79e-40 141
Msa0010750 AT3G30210.1 47.337 169 68 3 13 181 28 175 1.83e-40 142
Msa0010750 AT5G40350.1 55.455 110 49 0 11 120 16 125 2.52e-40 139
Msa0010750 AT4G37780.1 54.198 131 56 3 1 129 1 129 2.84e-40 142
Msa0010750 AT3G24310.1 57.407 108 46 0 8 115 14 121 4.30e-40 140
Msa0010750 AT2G36890.1 50.394 127 62 1 1 126 1 127 7.32e-40 141
Msa0010750 AT2G36890.2 50.394 127 62 1 1 126 42 168 8.51e-40 142
Msa0010750 AT5G55020.1 58.182 110 45 1 12 121 26 134 1.28e-39 145
Msa0010750 AT3G27810.1 47.328 131 64 1 9 134 17 147 4.01e-39 137
Msa0010750 AT5G06100.1 57.547 106 45 0 10 115 30 135 4.48e-39 142
Msa0010750 AT4G26930.1 56.364 110 47 1 12 121 19 127 4.54e-39 141
Msa0010750 AT5G59780.3 54.630 108 49 0 8 115 4 111 5.93e-39 137
Msa0010750 AT3G11440.2 56.731 104 45 0 12 115 41 144 9.51e-39 142
Msa0010750 AT2G32460.2 50.794 126 51 1 8 122 2 127 1.07e-38 142
Msa0010750 AT1G48000.1 43.791 153 77 2 11 161 31 176 1.09e-38 136
Msa0010750 AT2G32460.1 51.613 124 49 1 10 122 16 139 1.18e-38 142
Msa0010750 AT1G79180.2 48.252 143 41 1 9 118 11 153 1.44e-38 138
Msa0010750 AT5G06100.5 57.547 106 45 0 10 115 30 135 1.69e-38 142
Msa0010750 AT5G06100.2 57.547 106 45 0 10 115 30 135 1.69e-38 142
Msa0010750 AT5G06100.3 57.547 106 45 0 10 115 30 135 1.69e-38 142
Msa0010750 AT5G06100.4 57.547 106 45 0 10 115 30 135 1.69e-38 142
Msa0010750 AT2G26960.1 35.983 239 121 5 7 231 15 235 1.81e-38 140
Msa0010750 AT3G46130.1 54.206 107 49 0 13 119 10 116 3.59e-38 135
Msa0010750 AT3G11440.3 56.731 104 45 0 12 115 41 144 5.92e-38 140
Msa0010750 AT3G11440.4 56.731 104 45 0 12 115 41 144 5.92e-38 140
Msa0010750 AT3G11440.1 56.731 104 45 0 12 115 41 144 5.92e-38 140
Msa0010750 AT1G68320.1 51.695 118 57 0 10 127 17 134 3.24e-37 134
Msa0010750 AT1G25340.1 52.174 115 55 0 13 127 19 133 1.02e-36 132
Msa0010750 AT1G66370.1 55.769 104 46 0 12 115 8 111 8.21e-36 129
Msa0010750 AT3G53200.1 50.000 114 57 0 6 119 3 116 6.70e-35 126
Msa0010750 AT3G12820.2 73.611 72 19 0 48 119 2 73 7.31e-35 125
Msa0010750 AT2G47190.1 40.645 155 84 1 12 166 20 166 2.77e-34 125
Msa0010750 AT1G66380.1 58.654 104 43 0 12 115 8 111 8.01e-34 120
Msa0010750 AT2G26950.1 46.087 115 61 1 7 121 11 124 1.49e-33 126
Msa0010750 AT5G35550.2 37.500 216 94 5 43 254 48 226 2.13e-33 123
Msa0010750 AT3G06490.1 57.282 103 44 0 12 114 19 121 2.14e-33 124
Msa0010750 AT1G56650.1 50.388 129 56 1 12 132 8 136 3.53e-33 122
Msa0010750 AT3G60460.1 51.402 107 51 1 9 114 8 114 2.78e-32 121
Msa0010750 AT1G66390.1 56.604 106 46 0 10 115 6 111 5.91e-32 119
Msa0010750 AT1G25340.2 49.565 115 53 1 13 127 19 128 6.77e-32 119
Msa0010750 AT1G25340.3 49.565 115 53 1 13 127 19 128 1.08e-31 119
Msa0010750 AT5G49620.1 54.369 103 47 0 12 114 26 128 2.51e-31 119
Msa0010750 AT5G14750.3 68.116 69 22 0 48 116 18 86 4.75e-31 114
Msa0010750 AT3G47600.2 45.324 139 70 2 24 160 22 156 1.68e-30 117
Msa0010750 AT1G18960.1 46.154 117 58 3 14 129 10 122 2.41e-29 113
Msa0010750 AT3G46130.3 60.526 76 30 0 44 119 9 84 7.91e-29 110
Msa0010750 AT3G46130.4 61.333 75 29 0 45 119 20 94 2.27e-28 109
Msa0010750 AT5G59780.2 61.333 75 29 0 45 119 20 94 3.22e-28 108
Msa0010750 AT5G40350.2 57.895 76 32 0 45 120 5 80 4.91e-28 106
Msa0010750 AT5G02320.1 50.000 110 52 2 8 116 121 228 9.37e-28 112
Msa0010750 AT5G02320.2 50.000 110 52 2 8 116 121 228 9.37e-28 112
Msa0010750 AT5G02320.3 50.000 110 52 2 8 116 61 168 1.02e-27 112
Msa0010750 AT5G49620.2 47.863 117 47 1 12 114 26 142 1.06e-27 109
Msa0010750 AT1G22640.3 56.962 79 32 1 58 136 1 77 1.20e-27 106
Msa0010750 AT3G27810.2 47.368 95 45 1 45 134 4 98 4.05e-27 104
Msa0010750 AT3G27785.1 44.444 108 57 2 9 115 184 289 5.36e-27 109
Msa0010750 AT1G71030.2 58.442 77 32 0 51 127 5 81 2.20e-26 102
Msa0010750 AT2G39880.1 42.466 146 75 4 14 158 50 187 2.60e-26 106
Msa0010750 AT1G71030.1 58.442 77 32 0 51 127 19 95 3.06e-26 102
Msa0010750 AT4G18770.1 36.242 149 87 3 9 156 212 353 3.34e-26 107
Msa0010750 AT3G53200.2 60.000 75 30 0 45 119 9 83 8.92e-26 101
Msa0010750 AT3G09370.2 47.706 109 54 2 8 115 129 235 1.24e-25 106
Msa0010750 AT3G09370.1 47.706 109 54 2 8 115 124 230 1.29e-25 106
Msa0010750 AT3G09370.3 47.706 109 54 2 8 115 137 243 2.24e-25 105
Msa0010750 AT1G69560.1 38.636 132 78 2 6 136 99 228 2.74e-25 103
Msa0010750 AT5G67300.1 48.544 103 50 2 14 115 6 106 3.09e-25 102
Msa0010750 AT1G69560.2 38.636 132 78 2 6 136 115 244 3.79e-25 103
Msa0010750 AT5G58850.1 43.243 111 60 2 10 119 101 209 1.64e-24 102
Msa0010750 AT1G66380.3 59.740 77 31 0 39 115 2 78 2.23e-24 95.1
Msa0010750 AT3G55730.1 50.485 103 48 2 14 115 56 156 2.57e-24 101
Msa0010750 AT4G32730.1 44.545 110 58 2 8 116 81 188 2.59e-24 102
Msa0010750 AT4G32730.5 44.545 110 58 2 8 116 81 188 2.86e-24 102
Msa0010750 AT4G32730.4 44.545 110 58 2 8 116 81 188 2.86e-24 102
Msa0010750 AT4G32730.3 44.545 110 58 2 8 116 81 188 2.86e-24 102
Msa0010750 AT4G32730.2 44.545 110 58 2 8 116 81 188 2.86e-24 102
Msa0010750 AT5G11510.3 44.545 110 58 2 8 116 75 182 3.35e-24 102
Msa0010750 AT5G11510.1 44.545 110 58 2 8 116 75 182 3.35e-24 102
Msa0010750 AT5G11510.4 44.545 110 58 2 8 116 75 182 3.35e-24 102
Msa0010750 AT1G17950.1 33.333 174 97 6 14 185 5 161 4.32e-24 98.2
Msa0010750 AT5G11510.2 44.545 110 58 2 8 116 75 182 4.36e-24 102
Msa0010750 AT5G11510.5 44.545 110 58 2 8 116 75 182 5.02e-24 102
Msa0010750 AT5G40360.1 36.842 114 71 1 1 114 145 257 5.07e-24 100
Msa0010750 AT4G37260.1 48.148 108 53 2 14 120 13 118 6.34e-24 99.4
Msa0010750 AT3G09230.1 47.619 105 52 2 14 117 55 157 6.67e-24 100
Msa0010750 AT5G11050.1 43.689 103 55 2 14 115 105 205 1.26e-23 99.8
Msa0010750 AT3G50060.1 48.544 103 50 2 14 115 6 106 1.39e-23 97.8
Msa0010750 AT2G23290.1 50.485 103 48 2 14 115 13 113 1.41e-23 98.2
Msa0010750 AT2G25230.1 35.811 148 82 4 1 137 13 158 1.59e-23 96.3
Msa0010750 AT1G26780.1 43.810 105 56 2 12 115 96 198 1.85e-23 97.4
Msa0010750 AT1G26780.2 43.810 105 56 2 12 115 96 198 4.43e-23 97.4
Msa0010750 AT3G23250.2 64.407 59 21 0 58 116 1 59 2.22e-22 93.2
Msa0010750 AT5G14750.4 62.712 59 22 0 58 116 1 59 8.50e-22 89.4
Msa0010750 AT5G14750.2 62.712 59 22 0 58 116 1 59 8.50e-22 89.4
Msa0010750 AT3G29020.1 37.719 114 68 2 7 119 58 169 1.94e-21 90.9
Msa0010750 AT3G29020.2 37.719 114 68 2 7 119 60 171 2.24e-21 92.0
Msa0010750 AT5G17800.1 41.176 102 59 1 14 115 93 193 7.65e-21 90.9
Msa0010750 AT1G73410.1 42.718 103 56 2 14 115 6 106 9.64e-21 89.0
Msa0010750 AT1G66380.2 56.250 80 35 0 10 89 6 85 1.95e-20 84.7
Msa0010750 AT1G73410.2 42.718 103 56 2 14 115 6 106 2.69e-20 87.0
Msa0010750 AT4G33450.1 39.496 119 66 3 1 115 3 119 3.26e-20 87.8
Msa0010750 AT4G00540.2 42.478 113 59 3 8 116 97 207 4.73e-19 86.7
Msa0010750 AT4G00540.1 42.478 113 59 3 8 116 95 205 8.69e-19 86.3
Msa0010750 AT2G37630.1 32.877 146 76 2 17 160 7 132 1.34e-18 85.1
Msa0010750 AT5G40430.1 35.000 120 74 3 2 120 42 158 4.33e-18 82.0
Msa0010750 AT5G61420.1 69.388 49 15 0 81 129 2 50 6.07e-18 82.4
Msa0010750 AT2G02820.3 35.294 119 75 2 4 121 19 136 1.93e-16 78.6
Msa0010750 AT2G02820.1 35.294 119 75 2 4 121 19 136 2.32e-16 79.3
Msa0010750 AT2G02820.2 35.294 119 75 2 4 121 19 136 3.16e-16 79.0
Msa0010750 AT5G39700.1 34.483 116 75 1 4 119 46 160 8.12e-16 74.3
Msa0010750 AT4G25560.2 62.000 50 19 0 69 118 1 50 7.97e-15 72.4
Msa0010750 AT1G14350.2 35.238 105 67 1 17 121 28 131 1.02e-14 74.3
Msa0010750 AT1G14350.1 35.238 105 67 1 17 121 28 131 1.02e-14 74.3
Msa0010750 AT1G74430.2 59.615 52 21 0 77 128 8 59 1.59e-14 71.2
Msa0010750 AT5G15310.3 70.732 41 12 0 88 128 9 49 2.38e-14 71.6
Msa0010750 AT4G28110.2 63.415 41 15 0 88 128 4 44 6.56e-14 69.3
Msa0010750 AT1G22640.2 57.143 49 19 1 88 136 16 62 1.09e-13 68.6
Msa0010750 AT5G14340.2 39.785 93 51 3 88 178 10 99 1.94e-13 67.8
Msa0010750 AT3G18100.1 34.375 96 62 1 13 108 545 639 1.52e-12 68.2
Msa0010750 AT3G18100.3 34.375 96 62 1 13 108 497 591 1.73e-12 68.2
Msa0010750 AT3G18100.4 34.375 96 62 1 13 108 384 478 1.74e-12 67.8
Msa0010750 AT3G18100.2 34.375 96 62 1 13 108 332 426 2.30e-12 67.4
Msa0010750 AT5G59780.1 52.000 50 24 0 70 119 1 50 2.57e-12 64.3
Msa0010750 AT3G46130.2 55.319 47 21 0 73 119 4 50 2.59e-12 64.7
Msa0010750 AT3G28910.2 58.491 53 20 1 77 129 1 51 9.14e-12 64.3
Msa0010750 AT1G74650.3 65.854 41 14 0 77 117 1 41 2.95e-11 62.8

Find 49 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCAAAGGAGAACTAAATT+TGG 0.229289 1_1:+16240596 None:intergenic
AAAAGCTTCTTATCTTCTTC+AGG 0.239901 1_1:+16241747 None:intergenic
TTAATTAATCACTATAATAT+TGG 0.271272 1_1:-16240825 Msa0010750:CDS
TTCAATTACATAACCATGTT+TGG 0.314366 1_1:-16241726 Msa0010750:CDS
GACAGTGGCATTATCATTGA+TGG 0.336941 1_1:+16240933 None:intergenic
TTAAGATTACCAGCTAGTTT+AGG 0.344561 1_1:+16241681 None:intergenic
TTCCAAATTTAGTTCTCCTT+TGG 0.366592 1_1:-16240598 Msa0010750:CDS
CAATAATGAATCACTTATAA+AGG 0.375777 1_1:-16240970 Msa0010750:CDS
TTCATGAAGCACTTGGAAAT+AGG 0.380038 1_1:-16241208 Msa0010750:intron
AAGGCATTGAAGAGAAGAAT+TGG 0.404191 1_1:+16240658 None:intergenic
AAGTGATTCATTATTGATCA+AGG 0.424353 1_1:+16240977 None:intergenic
TGAGATGGATAAACTATTTG+AGG 0.450225 1_1:-16241286 Msa0010750:CDS
ATCAAGGGTTTATGTGTAGC+TGG 0.461421 1_1:+16240993 None:intergenic
ATTAATCACTATAATATTGG+TGG 0.467980 1_1:-16240822 Msa0010750:CDS
ATCTCATTATCTGTTCTCCC+TGG 0.474483 1_1:+16241071 None:intergenic
TACATAACCATGTTTGGTGT+TGG 0.474556 1_1:-16241720 Msa0010750:CDS
AAAGCTTCTTATCTTCTTCA+GGG 0.482620 1_1:+16241748 None:intergenic
TGGATAAACTATTTGAGGCC+TGG 0.498244 1_1:-16241281 Msa0010750:CDS
CAAATTGCATCACAATTACC+AGG 0.502920 1_1:-16241089 Msa0010750:CDS
AGTGATTCATTATTGATCAA+GGG 0.510521 1_1:+16240978 None:intergenic
CCATGTTTGGTGTTGGATGT+TGG 0.512330 1_1:-16241713 Msa0010750:CDS
AGTTCAGTTCCTAAACTAGC+TGG 0.517760 1_1:-16241690 Msa0010750:intron
TGTGTAGCTAAAGTCCTTTG+AGG 0.519345 1_1:+16240900 None:intergenic
TGTTCAAATTGTAATTGACT+TGG 0.522549 1_1:+16240684 None:intergenic
TTGAGGCCTGGTTTGAAGAG+AGG 0.523450 1_1:-16241269 Msa0010750:CDS
CCAACATCCAACACCAAACA+TGG 0.541756 1_1:+16241713 None:intergenic
GTCAATCTTCATGAAGCACT+TGG 0.545016 1_1:-16241215 Msa0010750:CDS
AATGGATCAAAATCAAATGT+TGG 0.545963 1_1:+16240753 None:intergenic
TATGAGTTGCAGGGTTGCAA+AGG 0.546405 1_1:-16241328 Msa0010750:intron
AATTGTAATTGACTTGGCTG+AGG 0.553273 1_1:+16240690 None:intergenic
ATCACTTATAAAGGAAGAGA+AGG 0.553443 1_1:-16240961 Msa0010750:CDS
ATACTTAAATTGTAGTGCAA+TGG 0.557404 1_1:+16240735 None:intergenic
GGATCATCATCTTTAACAGA+AGG 0.562744 1_1:-16240801 Msa0010750:CDS
GAAAGAGCTGTAGATTGAGA+TGG 0.574964 1_1:-16241301 Msa0010750:CDS
TGATTAATGAAAATGCCTCA+TGG 0.578303 1_1:-16240530 Msa0010750:CDS
AACATTCCTCTCTTCAAACC+AGG 0.578887 1_1:+16241263 None:intergenic
AGGAATGTTCTCAAAACAAG+AGG 0.587388 1_1:-16241249 Msa0010750:CDS
TGAGGTTGAGATTGAGACAG+TGG 0.588035 1_1:+16240918 None:intergenic
AAGCTTCTTATCTTCTTCAG+GGG 0.610649 1_1:+16241749 None:intergenic
TGCTTCTGAATATTCATGTG+AGG 0.611193 1_1:+16240863 None:intergenic
TGTCTCAATCTCAACCTCAA+AGG 0.619555 1_1:-16240914 Msa0010750:CDS
TCACTTTCAATATTCACCAA+AGG 0.621840 1_1:+16240582 None:intergenic
AAGAAGAAACTAATGAAACA+AGG 0.624080 1_1:-16241023 Msa0010750:CDS
AGAAGAAACTAATGAAACAA+GGG 0.641105 1_1:-16241022 Msa0010750:CDS
GTTGCAGGGTTGCAAAGGTG+CGG 0.652909 1_1:-16241323 Msa0010750:intron
TTGTCTGAACTATTTAGACA+AGG 0.673798 1_1:+16240639 None:intergenic
TCACGATCACTTTCTCCATG+AGG 0.696107 1_1:+16240515 None:intergenic
AAATTGCATCACAATTACCA+GGG 0.713478 1_1:-16241088 Msa0010750:CDS
ACTCATGTTTGTGACTTGTG+AGG 0.732197 1_1:+16241818 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATTAATCACTATAATAT+TGG - chr1_1:16241488-16241507 Msa0010750:intron 10.0%
!! TTAATTAATCACTATAATAT+TGG - chr1_1:16241488-16241507 Msa0010750:intron 10.0%
!! TCATAAAAATTATATATGCA+TGG + chr1_1:16240970-16240989 None:intergenic 15.0%
!!! TTAATTAATAATCACTTTTG+AGG + chr1_1:16241179-16241198 None:intergenic 15.0%
!!! ATAATGAGATAAAAAACTTT+TGG - chr1_1:16241255-16241274 Msa0010750:CDS 15.0%
!! TCATAAAAATTATATATGCA+TGG + chr1_1:16240970-16240989 None:intergenic 15.0%
!!! TTAATTAATAATCACTTTTG+AGG + chr1_1:16241179-16241198 None:intergenic 15.0%
!!! ATAATGAGATAAAAAACTTT+TGG - chr1_1:16241255-16241274 Msa0010750:CDS 15.0%
!!! TAGTTTTTGCTTTAAAGAAT+AGG + chr1_1:16240528-16240547 None:intergenic 20.0%
!! TTAAAGCAAAAACTAAGAAA+AGG - chr1_1:16240533-16240552 Msa0010750:CDS 20.0%
!! AAAAACTAAGAAAAGGTTTA+TGG - chr1_1:16240540-16240559 Msa0010750:CDS 20.0%
!!! TAGTTGCTATATATTTTGTT+GGG + chr1_1:16240707-16240726 None:intergenic 20.0%
!!! ATAGTTGCTATATATTTTGT+TGG + chr1_1:16240708-16240727 None:intergenic 20.0%
!! ATGGTAAAGGAAAAAATTTA+AGG + chr1_1:16240951-16240970 None:intergenic 20.0%
!! AAATTATATATGCATGGTAA+AGG + chr1_1:16240964-16240983 None:intergenic 20.0%
!!! ATATAATTTTTATGAGTTGC+AGG - chr1_1:16240975-16240994 Msa0010750:CDS 20.0%
!!! TATAATTTTTATGAGTTGCA+GGG - chr1_1:16240976-16240995 Msa0010750:CDS 20.0%
!! CAATAATGAATCACTTATAA+AGG - chr1_1:16241343-16241362 Msa0010750:intron 20.0%
!! ATTAATCACTATAATATTGG+TGG - chr1_1:16241491-16241510 Msa0010750:intron 20.0%
!!! TAGTTTTTGCTTTAAAGAAT+AGG + chr1_1:16240528-16240547 None:intergenic 20.0%
!! TTAAAGCAAAAACTAAGAAA+AGG - chr1_1:16240533-16240552 Msa0010750:CDS 20.0%
!! AAAAACTAAGAAAAGGTTTA+TGG - chr1_1:16240540-16240559 Msa0010750:CDS 20.0%
!!! TAGTTGCTATATATTTTGTT+GGG + chr1_1:16240707-16240726 None:intergenic 20.0%
!!! ATAGTTGCTATATATTTTGT+TGG + chr1_1:16240708-16240727 None:intergenic 20.0%
!! ATGGTAAAGGAAAAAATTTA+AGG + chr1_1:16240951-16240970 None:intergenic 20.0%
!! AAATTATATATGCATGGTAA+AGG + chr1_1:16240964-16240983 None:intergenic 20.0%
!!! ATATAATTTTTATGAGTTGC+AGG - chr1_1:16240975-16240994 Msa0010750:CDS 20.0%
!!! TATAATTTTTATGAGTTGCA+GGG - chr1_1:16240976-16240995 Msa0010750:CDS 20.0%
!! CAATAATGAATCACTTATAA+AGG - chr1_1:16241343-16241362 Msa0010750:intron 20.0%
!! ATTAATCACTATAATATTGG+TGG - chr1_1:16241491-16241510 Msa0010750:intron 20.0%
! TTCAATTACATAACCATGTT+TGG - chr1_1:16240587-16240606 Msa0010750:CDS 25.0%
!! TTGGGTTGTATAAGTATATA+TGG + chr1_1:16240689-16240708 None:intergenic 25.0%
! CATATCAAGTTATCAACATA+TGG - chr1_1:16240890-16240909 Msa0010750:CDS 25.0%
! ATTATGTTCAAACATGTTGA+TGG - chr1_1:16241140-16241159 Msa0010750:intron 25.0%
! AAGAAGAAACTAATGAAACA+AGG - chr1_1:16241290-16241309 Msa0010750:CDS 25.0%
! AGAAGAAACTAATGAAACAA+GGG - chr1_1:16241291-16241310 Msa0010750:CDS 25.0%
! AGTGATTCATTATTGATCAA+GGG + chr1_1:16241338-16241357 None:intergenic 25.0%
! AAGTGATTCATTATTGATCA+AGG + chr1_1:16241339-16241358 None:intergenic 25.0%
! AATGGATCAAAATCAAATGT+TGG + chr1_1:16241563-16241582 None:intergenic 25.0%
! ATACTTAAATTGTAGTGCAA+TGG + chr1_1:16241581-16241600 None:intergenic 25.0%
! TGTTCAAATTGTAATTGACT+TGG + chr1_1:16241632-16241651 None:intergenic 25.0%
! TTCAATTACATAACCATGTT+TGG - chr1_1:16240587-16240606 Msa0010750:CDS 25.0%
!! TTGGGTTGTATAAGTATATA+TGG + chr1_1:16240689-16240708 None:intergenic 25.0%
! CATATCAAGTTATCAACATA+TGG - chr1_1:16240890-16240909 Msa0010750:CDS 25.0%
! ATTATGTTCAAACATGTTGA+TGG - chr1_1:16241140-16241159 Msa0010750:intron 25.0%
! AAGAAGAAACTAATGAAACA+AGG - chr1_1:16241290-16241309 Msa0010750:CDS 25.0%
! AGAAGAAACTAATGAAACAA+GGG - chr1_1:16241291-16241310 Msa0010750:CDS 25.0%
! AGTGATTCATTATTGATCAA+GGG + chr1_1:16241338-16241357 None:intergenic 25.0%
! AAGTGATTCATTATTGATCA+AGG + chr1_1:16241339-16241358 None:intergenic 25.0%
! AATGGATCAAAATCAAATGT+TGG + chr1_1:16241563-16241582 None:intergenic 25.0%
! ATACTTAAATTGTAGTGCAA+TGG + chr1_1:16241581-16241600 None:intergenic 25.0%
! TGTTCAAATTGTAATTGACT+TGG + chr1_1:16241632-16241651 None:intergenic 25.0%
TGTGAGGACAATAGAAAAAA+AGG + chr1_1:16240482-16240501 None:intergenic 30.0%
AAAGCTTCTTATCTTCTTCA+GGG + chr1_1:16240568-16240587 None:intergenic 30.0%
AAAAGCTTCTTATCTTCTTC+AGG + chr1_1:16240569-16240588 None:intergenic 30.0%
! TTAAGATTACCAGCTAGTTT+AGG + chr1_1:16240635-16240654 None:intergenic 30.0%
TGAGATGGATAAACTATTTG+AGG - chr1_1:16241027-16241046 Msa0010750:CDS 30.0%
TTAATTTCAAATGATGCCTC+AGG - chr1_1:16241195-16241214 Msa0010750:intron 30.0%
AAATTGCATCACAATTACCA+GGG - chr1_1:16241225-16241244 Msa0010750:CDS 30.0%
ATCACTTATAAAGGAAGAGA+AGG - chr1_1:16241352-16241371 Msa0010750:intron 30.0%
TTGTCTGAACTATTTAGACA+AGG + chr1_1:16241677-16241696 None:intergenic 30.0%
!! TTCCAAATTTAGTTCTCCTT+TGG - chr1_1:16241715-16241734 Msa0010750:CDS 30.0%
TCACTTTCAATATTCACCAA+AGG + chr1_1:16241734-16241753 None:intergenic 30.0%
TGATTAATGAAAATGCCTCA+TGG - chr1_1:16241783-16241802 Msa0010750:CDS 30.0%
TGTGAGGACAATAGAAAAAA+AGG + chr1_1:16240482-16240501 None:intergenic 30.0%
AAAGCTTCTTATCTTCTTCA+GGG + chr1_1:16240568-16240587 None:intergenic 30.0%
AAAAGCTTCTTATCTTCTTC+AGG + chr1_1:16240569-16240588 None:intergenic 30.0%
! TTAAGATTACCAGCTAGTTT+AGG + chr1_1:16240635-16240654 None:intergenic 30.0%
TGAGATGGATAAACTATTTG+AGG - chr1_1:16241027-16241046 Msa0010750:CDS 30.0%
TTAATTTCAAATGATGCCTC+AGG - chr1_1:16241195-16241214 Msa0010750:intron 30.0%
AAATTGCATCACAATTACCA+GGG - chr1_1:16241225-16241244 Msa0010750:CDS 30.0%
ATCACTTATAAAGGAAGAGA+AGG - chr1_1:16241352-16241371 Msa0010750:intron 30.0%
TTGTCTGAACTATTTAGACA+AGG + chr1_1:16241677-16241696 None:intergenic 30.0%
!! TTCCAAATTTAGTTCTCCTT+TGG - chr1_1:16241715-16241734 Msa0010750:CDS 30.0%
TCACTTTCAATATTCACCAA+AGG + chr1_1:16241734-16241753 None:intergenic 30.0%
TGATTAATGAAAATGCCTCA+TGG - chr1_1:16241783-16241802 Msa0010750:CDS 30.0%
AAGCTTCTTATCTTCTTCAG+GGG + chr1_1:16240567-16240586 None:intergenic 35.0%
!! TACATAACCATGTTTGGTGT+TGG - chr1_1:16240593-16240612 Msa0010750:CDS 35.0%
ATGGCATTCATGCATGTTTA+TGG + chr1_1:16240670-16240689 None:intergenic 35.0%
GAGAGAATGAAAGTGAGAAT+AGG + chr1_1:16240807-16240826 None:intergenic 35.0%
AGGAATGTTCTCAAAACAAG+AGG - chr1_1:16241064-16241083 Msa0010750:CDS 35.0%
! TTCATGAAGCACTTGGAAAT+AGG - chr1_1:16241105-16241124 Msa0010750:intron 35.0%
CAAATTGCATCACAATTACC+AGG - chr1_1:16241224-16241243 Msa0010750:CDS 35.0%
TGCTTCTGAATATTCATGTG+AGG + chr1_1:16241453-16241472 None:intergenic 35.0%
GGATCATCATCTTTAACAGA+AGG - chr1_1:16241512-16241531 Msa0010750:intron 35.0%
!! AATTGTAATTGACTTGGCTG+AGG + chr1_1:16241626-16241645 None:intergenic 35.0%
!! AAGGCATTGAAGAGAAGAAT+TGG + chr1_1:16241658-16241677 None:intergenic 35.0%
CACCAAAGGAGAACTAAATT+TGG + chr1_1:16241720-16241739 None:intergenic 35.0%
AAGCTTCTTATCTTCTTCAG+GGG + chr1_1:16240567-16240586 None:intergenic 35.0%
!! TACATAACCATGTTTGGTGT+TGG - chr1_1:16240593-16240612 Msa0010750:CDS 35.0%
ATGGCATTCATGCATGTTTA+TGG + chr1_1:16240670-16240689 None:intergenic 35.0%
GAGAGAATGAAAGTGAGAAT+AGG + chr1_1:16240807-16240826 None:intergenic 35.0%
AGGAATGTTCTCAAAACAAG+AGG - chr1_1:16241064-16241083 Msa0010750:CDS 35.0%
! TTCATGAAGCACTTGGAAAT+AGG - chr1_1:16241105-16241124 Msa0010750:intron 35.0%
CAAATTGCATCACAATTACC+AGG - chr1_1:16241224-16241243 Msa0010750:CDS 35.0%
TGCTTCTGAATATTCATGTG+AGG + chr1_1:16241453-16241472 None:intergenic 35.0%
GGATCATCATCTTTAACAGA+AGG - chr1_1:16241512-16241531 Msa0010750:intron 35.0%
!! AATTGTAATTGACTTGGCTG+AGG + chr1_1:16241626-16241645 None:intergenic 35.0%
!! AAGGCATTGAAGAGAAGAAT+TGG + chr1_1:16241658-16241677 None:intergenic 35.0%
CACCAAAGGAGAACTAAATT+TGG + chr1_1:16241720-16241739 None:intergenic 35.0%
! ACTCATGTTTGTGACTTGTG+AGG + chr1_1:16240498-16240517 None:intergenic 40.0%
AGTTCAGTTCCTAAACTAGC+TGG - chr1_1:16240623-16240642 Msa0010750:CDS 40.0%
GAAAGAGCTGTAGATTGAGA+TGG - chr1_1:16241012-16241031 Msa0010750:CDS 40.0%
! TGGATAAACTATTTGAGGCC+TGG - chr1_1:16241032-16241051 Msa0010750:CDS 40.0%
AACATTCCTCTCTTCAAACC+AGG + chr1_1:16241053-16241072 None:intergenic 40.0%
! GTCAATCTTCATGAAGCACT+TGG - chr1_1:16241098-16241117 Msa0010750:CDS 40.0%
ATTTCAAATGATGCCTCAGG+TGG - chr1_1:16241198-16241217 Msa0010750:intron 40.0%
TTTCAAATGATGCCTCAGGT+GGG - chr1_1:16241199-16241218 Msa0010750:intron 40.0%
ATCTCATTATCTGTTCTCCC+TGG + chr1_1:16241245-16241264 None:intergenic 40.0%
ATCAAGGGTTTATGTGTAGC+TGG + chr1_1:16241323-16241342 None:intergenic 40.0%
GACAGTGGCATTATCATTGA+TGG + chr1_1:16241383-16241402 None:intergenic 40.0%
TGTCTCAATCTCAACCTCAA+AGG - chr1_1:16241399-16241418 Msa0010750:intron 40.0%
TGTGTAGCTAAAGTCCTTTG+AGG + chr1_1:16241416-16241435 None:intergenic 40.0%
! ACTCATGTTTGTGACTTGTG+AGG + chr1_1:16240498-16240517 None:intergenic 40.0%
AGTTCAGTTCCTAAACTAGC+TGG - chr1_1:16240623-16240642 Msa0010750:CDS 40.0%
GAAAGAGCTGTAGATTGAGA+TGG - chr1_1:16241012-16241031 Msa0010750:CDS 40.0%
! TGGATAAACTATTTGAGGCC+TGG - chr1_1:16241032-16241051 Msa0010750:CDS 40.0%
AACATTCCTCTCTTCAAACC+AGG + chr1_1:16241053-16241072 None:intergenic 40.0%
! GTCAATCTTCATGAAGCACT+TGG - chr1_1:16241098-16241117 Msa0010750:CDS 40.0%
ATTTCAAATGATGCCTCAGG+TGG - chr1_1:16241198-16241217 Msa0010750:intron 40.0%
TTTCAAATGATGCCTCAGGT+GGG - chr1_1:16241199-16241218 Msa0010750:intron 40.0%
ATCTCATTATCTGTTCTCCC+TGG + chr1_1:16241245-16241264 None:intergenic 40.0%
ATCAAGGGTTTATGTGTAGC+TGG + chr1_1:16241323-16241342 None:intergenic 40.0%
GACAGTGGCATTATCATTGA+TGG + chr1_1:16241383-16241402 None:intergenic 40.0%
TGTCTCAATCTCAACCTCAA+AGG - chr1_1:16241399-16241418 Msa0010750:intron 40.0%
TGTGTAGCTAAAGTCCTTTG+AGG + chr1_1:16241416-16241435 None:intergenic 40.0%
CCAACATCCAACACCAAACA+TGG + chr1_1:16240603-16240622 None:intergenic 45.0%
!! CCATGTTTGGTGTTGGATGT+TGG - chr1_1:16240600-16240619 Msa0010750:CDS 45.0%
TATGAGTTGCAGGGTTGCAA+AGG - chr1_1:16240985-16241004 Msa0010750:CDS 45.0%
TGAGGTTGAGATTGAGACAG+TGG + chr1_1:16241398-16241417 None:intergenic 45.0%
TCACGATCACTTTCTCCATG+AGG + chr1_1:16241801-16241820 None:intergenic 45.0%
CCAACATCCAACACCAAACA+TGG + chr1_1:16240603-16240622 None:intergenic 45.0%
!! CCATGTTTGGTGTTGGATGT+TGG - chr1_1:16240600-16240619 Msa0010750:CDS 45.0%
TATGAGTTGCAGGGTTGCAA+AGG - chr1_1:16240985-16241004 Msa0010750:CDS 45.0%
TGAGGTTGAGATTGAGACAG+TGG + chr1_1:16241398-16241417 None:intergenic 45.0%
TCACGATCACTTTCTCCATG+AGG + chr1_1:16241801-16241820 None:intergenic 45.0%
! TTGAGGCCTGGTTTGAAGAG+AGG - chr1_1:16241044-16241063 Msa0010750:CDS 50.0%
ATGCAATTTGAGCCCACCTG+AGG + chr1_1:16241214-16241233 None:intergenic 50.0%
! TTGAGGCCTGGTTTGAAGAG+AGG - chr1_1:16241044-16241063 Msa0010750:CDS 50.0%
ATGCAATTTGAGCCCACCTG+AGG + chr1_1:16241214-16241233 None:intergenic 50.0%
GTTGCAGGGTTGCAAAGGTG+CGG - chr1_1:16240990-16241009 Msa0010750:CDS 55.0%
GTTGCAGGGTTGCAAAGGTG+CGG - chr1_1:16240990-16241009 Msa0010750:CDS 55.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 16240457 16241878 16240457 ID=Msa0010750;Name=Msa0010750
chr1_1 mRNA 16240457 16241878 16240457 ID=Msa0010750-mRNA-1;Parent=Msa0010750;Name=Msa0010750-mRNA-1;_AED=0.05;_eAED=0.05;_QI=55|1|1|1|1|1|3|64|286
chr1_1 exon 16240457 16241118 16240457 ID=Msa0010750-mRNA-1:exon:5934;Parent=Msa0010750-mRNA-1
chr1_1 exon 16241209 16241338 16241209 ID=Msa0010750-mRNA-1:exon:5933;Parent=Msa0010750-mRNA-1
chr1_1 exon 16241691 16241878 16241691 ID=Msa0010750-mRNA-1:exon:5932;Parent=Msa0010750-mRNA-1
chr1_1 five_prime_UTR 16241824 16241878 16241824 ID=Msa0010750-mRNA-1:five_prime_utr;Parent=Msa0010750-mRNA-1
chr1_1 CDS 16241691 16241823 16241691 ID=Msa0010750-mRNA-1:cds;Parent=Msa0010750-mRNA-1
chr1_1 CDS 16241209 16241338 16241209 ID=Msa0010750-mRNA-1:cds;Parent=Msa0010750-mRNA-1
chr1_1 CDS 16240521 16241118 16240521 ID=Msa0010750-mRNA-1:cds;Parent=Msa0010750-mRNA-1
chr1_1 three_prime_UTR 16240457 16240520 16240457 ID=Msa0010750-mRNA-1:three_prime_utr;Parent=Msa0010750-mRNA-1
Gene Sequence

>Msa0010750

ATGAGTCGTCATTCCTATTCTTTAAAGCAAAAACTAAGAAAAGGTTTATGGTCCCCTGAAGAAGATAAGAAGCTTTTCAATTACATAACCATGTTTGGTGTTGGATGTTGGAGTTCAGTTCCTAAACTAGCTGGGTTGCAAAGGTGCGGAAAGAGCTGTAGATTGAGATGGATAAACTATTTGAGGCCTGGTTTGAAGAGAGGAATGTTCTCAAAACAAGAGGAAGATCTTATCGTCAATCTTCATGAAGCACTTGGAAATAGGTGGGCTCAAATTGCATCACAATTACCAGGGAGAACAGATAATGAGATAAAAAACTTTTGGAATTCAAGTTTGAAGAAGAAACTAATGAAACAAGGGATTGATCCAGCTACACATAAACCCTTGATCAATAATGAATCACTTATAAAGGAAGAGAAGGAAAAACCATCAATGATAATGCCACTGTCTCAATCTCAACCTCAAAGGACTTTAGCTACACACACAAAGCTAGAATCCTCACATGAATATTCAGAAGCACTTCTAATGAGTGATTTAATTAATCACTATAATATTGGTGGATCATCATCTTTAACAGAAGGTTCAAGAAAATTTGTTATGAATAAGCCAACATTTGATTTTGATCCATTGCACTACAATTTAAGTATGACTATGAGTAATTATTATCAGCCTCAGCCAAGTCAATTACAATTTGAACAGAACCAATTCTTCTCTTCAATGCCTTGTCTAAATAGTTCAGACAACATCAACGAGAACTCATTTTCCAAATTTAGTTCTCCTTTGGTGAATATTGAAAGTGATCGTGATTATTATCAAATAATGAGCAACATGATTAATGAAAATGCCTCATGGAGAAAGTGA
Protein sequence

>Msa0010750

MSRHSYSLKQKLRKGLWSPEEDKKLFNYITMFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPGLKRGMFSKQEEDLIVNLHEALGNRWAQIASQLPGRTDNEIKNFWNSSLKKKLMKQGIDPATHKPLINNESLIKEEKEKPSMIMPLSQSQPQRTLATHTKLESSHEYSEALLMSDLINHYNIGGSSSLTEGSRKFVMNKPTFDFDPLHYNLSMTMSNYYQPQPSQLQFEQNQFFSSMPCLNSSDNINENSFSKFSSPLVNIESDRDYYQIMSNMINENASWRK*