AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0010790


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0010790 MtrunA17_Chr1g0211081 80.502 518 33 6 1 454 6 519 0.0 806
Msa0010790 MtrunA17_Chr8g0365711 27.468 466 269 15 5 451 4 419 1.14e-40 150
Msa0010790 MtrunA17_Chr3g0131691 35.714 196 114 1 253 448 293 476 1.30e-35 137
Msa0010790 MtrunA17_Chr7g0252041 36.318 201 101 4 257 448 285 467 2.24e-31 125
Msa0010790 MtrunA17_Chr2g0298751 34.426 183 100 5 251 427 45 213 3.04e-21 92.8
Msa0010790 MtrunA17_Chr4g0048851 34.545 165 81 3 257 421 46 183 5.53e-21 90.9
Msa0010790 MtrunA17_Chr2g0320291 31.953 169 81 3 243 408 121 258 3.50e-19 88.2
Msa0010790 MtrunA17_Chr4g0028071 32.704 159 77 5 252 404 143 277 8.77e-18 84.3
Msa0010790 MtrunA17_Chr5g0411541 28.846 208 106 4 246 447 144 315 4.29e-17 82.0
Msa0010790 MtrunA17_Chr3g0141091 29.064 203 107 5 246 447 161 327 1.45e-16 80.9
Msa0010790 MtrunA17_Chr1g0185621 29.534 193 105 6 252 433 464 636 1.54e-15 79.3
Msa0010790 MtrunA17_Chr8g0346161 30.526 190 97 7 237 418 268 430 6.26e-15 76.6
Msa0010790 MtrunA17_Chr5g0411341 30.055 183 108 6 242 417 472 641 8.72e-14 73.6
Msa0010790 MtrunA17_Chr7g0260841 42.045 88 50 1 226 313 324 410 1.00e-13 73.2
Msa0010790 MtrunA17_Chr7g0225901 28.324 173 102 4 244 416 74 224 1.57e-13 70.5
Msa0010790 MtrunA17_Chr8g0386921 30.939 181 113 4 238 410 386 562 3.02e-13 72.0
Msa0010790 MtrunA17_Chr5g0400661 28.866 194 96 7 251 430 142 307 4.10e-13 70.5
Msa0010790 MtrunA17_Chr4g0054581 26.012 173 99 4 250 416 190 339 4.15e-13 70.9
Msa0010790 MtrunA17_Chr8g0366751 30.189 159 94 4 262 417 466 610 1.15e-12 70.1
Msa0010790 MtrunA17_Chr7g0275821 55.556 54 24 0 262 315 256 309 1.15e-12 69.7
Msa0010790 MtrunA17_Chr8g0346151 40.260 77 44 1 237 311 256 332 4.65e-12 67.8
Msa0010790 MtrunA17_Chr5g0400621 28.261 184 85 6 245 416 145 293 5.40e-12 67.0
Msa0010790 MtrunA17_Chr2g0307131 27.976 168 99 5 249 416 170 315 8.20e-12 66.6
Msa0010790 MtrunA17_Chr6g0468491 30.435 184 99 8 236 416 116 273 8.41e-12 66.2
Msa0010790 MtrunA17_Chr5g0400671 33.000 100 60 1 230 322 119 218 1.06e-11 65.9
Msa0010790 MtrunA17_Chr0c01g0489461 25.243 206 125 6 259 449 197 388 1.30e-11 66.2
Msa0010790 MtrunA17_Chr4g0048891 38.000 100 56 2 222 315 3 102 1.71e-11 62.0
Msa0010790 MtrunA17_Chr2g0333621 28.095 210 121 7 213 416 90 275 2.60e-11 64.7
Msa0010790 MtrunA17_Chr4g0049331 49.091 55 28 0 259 313 136 190 2.90e-11 64.3
Msa0010790 MtrunA17_Chr4g0054571 37.143 70 44 0 244 313 136 205 5.00e-11 63.9
Msa0010790 MtrunA17_Chr8g0366551 28.000 175 98 6 259 423 126 282 9.00e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0010790 AT2G16910.1 42.617 535 203 16 1 457 5 513 3.50e-115 350
Msa0010790 AT3G26744.1 35.751 193 111 3 257 448 306 486 5.78e-32 128
Msa0010790 AT3G26744.4 35.751 193 111 3 257 448 306 486 5.78e-32 128
Msa0010790 AT3G26744.2 35.751 193 111 3 257 448 306 486 5.78e-32 128
Msa0010790 AT3G26744.6 38.506 174 95 2 257 430 306 467 1.41e-31 126
Msa0010790 AT1G12860.1 36.269 193 106 3 257 448 266 442 2.65e-31 125
Msa0010790 AT1G12860.2 37.356 174 93 2 257 430 266 423 3.43e-30 122
Msa0010790 AT5G57150.1 33.333 201 115 5 240 435 32 218 4.25e-21 92.8
Msa0010790 AT5G57150.5 33.163 196 112 5 240 430 32 213 7.45e-21 91.3
Msa0010790 AT5G57150.2 33.163 196 112 5 240 430 33 214 1.10e-20 90.9
Msa0010790 AT5G57150.3 33.163 196 112 5 240 430 33 214 1.11e-20 90.9
Msa0010790 AT5G57150.4 33.163 196 112 5 240 430 33 214 1.71e-20 91.3
Msa0010790 AT4G21330.1 29.442 197 118 4 256 452 30 205 1.29e-18 84.7
Msa0010790 AT2G28160.1 31.013 158 89 4 250 407 123 260 1.16e-17 84.0
Msa0010790 AT2G28160.2 31.013 158 89 4 250 407 123 260 1.24e-17 84.0
Msa0010790 AT1G10610.3 25.926 216 141 3 234 449 143 339 2.86e-17 83.2
Msa0010790 AT1G10610.2 27.320 194 122 3 256 449 232 406 3.19e-17 84.0
Msa0010790 AT1G10610.1 27.320 194 122 3 256 449 262 436 3.80e-17 84.0
Msa0010790 AT1G63650.3 28.947 190 123 5 261 446 408 589 5.83e-17 84.0
Msa0010790 AT1G63650.1 28.947 190 123 5 261 446 408 589 5.83e-17 84.0
Msa0010790 AT1G63650.2 28.947 190 123 5 261 446 408 589 5.83e-17 84.0
Msa0010790 AT5G46760.1 30.769 156 90 3 262 417 419 556 1.34e-16 82.8
Msa0010790 AT4G29930.1 29.534 193 119 5 257 440 53 237 2.71e-16 79.0
Msa0010790 AT5G65640.1 29.767 215 119 5 246 457 166 351 2.87e-16 80.5
Msa0010790 AT5G10570.1 31.220 205 99 7 248 447 138 305 5.45e-16 79.0
Msa0010790 AT2G46510.1 44.086 93 47 1 243 330 375 467 8.76e-16 80.1
Msa0010790 AT4G17880.1 30.387 181 99 5 242 417 395 553 3.34e-15 78.6
Msa0010790 AT4G29930.3 29.213 178 111 4 257 427 53 222 3.52e-15 75.9
Msa0010790 AT4G29930.7 29.213 178 111 4 257 427 53 222 3.52e-15 75.9
Msa0010790 AT5G65640.2 57.746 71 30 0 246 316 166 236 5.34e-15 75.9
Msa0010790 AT4G29930.6 29.032 186 103 4 257 440 53 211 2.04e-14 72.8
Msa0010790 AT4G29930.4 55.000 60 27 0 257 316 53 112 4.23e-14 70.9
Msa0010790 AT4G29930.2 29.787 188 96 4 257 440 53 208 4.51e-14 72.0
Msa0010790 AT4G29930.5 55.000 60 27 0 257 316 53 112 5.32e-14 72.0
Msa0010790 AT4G37850.2 28.061 196 115 6 245 436 136 309 6.20e-14 73.2
Msa0010790 AT4G37850.1 28.061 196 115 6 245 436 136 309 6.20e-14 73.2
Msa0010790 AT5G41315.1 26.570 207 111 6 261 446 444 630 1.39e-13 73.6
Msa0010790 AT5G41315.2 26.570 207 111 6 261 446 452 638 1.40e-13 73.6
Msa0010790 AT5G41315.3 26.570 207 111 6 261 446 449 635 1.45e-13 73.6
Msa0010790 AT4G09820.1 28.261 184 88 4 259 440 364 505 1.69e-13 72.8
Msa0010790 AT5G46830.1 28.495 186 108 5 262 447 347 507 1.13e-12 70.5
Msa0010790 AT1G01260.1 42.045 88 49 2 229 315 404 490 1.81e-12 69.7
Msa0010790 AT1G01260.2 42.045 88 49 2 229 315 404 490 1.81e-12 69.7
Msa0010790 AT1G01260.3 42.045 88 49 2 229 315 404 490 1.81e-12 69.7
Msa0010790 AT3G24140.1 27.094 203 125 6 260 449 200 392 2.08e-12 69.3
Msa0010790 AT3G24140.2 26.961 204 126 6 259 449 199 392 2.50e-12 68.9
Msa0010790 AT1G32640.1 29.947 187 107 4 262 447 456 619 4.31e-12 68.9
Msa0010790 AT4G16430.1 43.421 76 38 1 243 313 300 375 5.41e-12 68.2
Msa0010790 AT2G22770.1 28.846 156 104 4 259 414 133 281 8.29e-12 66.6
Msa0010790 AT2G22750.4 29.091 165 100 3 252 416 148 295 1.33e-11 66.2
Msa0010790 AT2G22750.5 29.091 165 100 3 252 416 144 291 1.33e-11 66.2
Msa0010790 AT2G22750.3 29.091 165 100 3 252 416 148 295 1.41e-11 65.9
Msa0010790 AT2G22750.2 29.091 165 100 3 252 416 120 267 1.73e-11 65.5
Msa0010790 AT2G22750.1 29.091 165 100 3 252 416 120 267 1.78e-11 65.5
Msa0010790 AT3G06120.1 27.528 178 115 5 259 430 3 172 3.49e-11 62.8
Msa0010790 AT2G24260.1 32.812 128 72 3 246 362 137 261 5.55e-11 64.3
Msa0010790 AT4G00870.1 40.323 62 37 0 262 323 253 314 6.52e-11 64.7
Msa0010790 AT2G24260.2 32.812 128 72 3 246 362 34 158 6.54e-11 63.2

Find 78 sgRNAs with CRISPR-Local

Find 147 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAACATTGTTATTATTATT+TGG 0.155242 1_1:+16312314 None:intergenic
CTATCAAGCTTTGAGATTCT+TGG 0.205780 1_1:+16312476 None:intergenic
CTCTTGTTGGTTTGAATGGC+TGG 0.239275 1_1:-16314274 Msa0010790:CDS
TGAAATCCATGTTCTGCTTT+TGG 0.239465 1_1:+16312293 None:intergenic
CTTGATAGAGCATCTATTCT+TGG 0.248227 1_1:-16312461 Msa0010790:CDS
CAGCAACAAGGTTCTTTGAT+TGG 0.308174 1_1:+16312555 None:intergenic
GTGGAAGTGGCTCAGATAGA+TGG 0.338551 1_1:-16312061 Msa0010790:CDS
GATGTTCTTCTCCACCATTT+TGG 0.343592 1_1:+16314054 None:intergenic
GTTATATAACCTTCGTTCAT+TGG 0.349149 1_1:-16312501 Msa0010790:CDS
GAAGGAAGAAACTGAATGAT+AGG 0.368436 1_1:-16312523 Msa0010790:CDS
CAAATCTTCATGCTGGAACT+TGG 0.371640 1_1:-16311698 Msa0010790:CDS
AGACCTCTTGTTGGTTTGAA+TGG 0.376737 1_1:-16314278 Msa0010790:CDS
GGTTGGGATGTTGTTGTGGT+GGG 0.420257 1_1:-16314088 Msa0010790:CDS
TGAGCTCTTTGTAACTAAAC+AGG 0.421848 1_1:-16313492 Msa0010790:intron
AAGAGGATGATGGAAAATAT+AGG 0.425274 1_1:-16312598 Msa0010790:CDS
TATAGGAGAAGAAGTGGAAA+AGG 0.445604 1_1:-16312581 Msa0010790:CDS
GAGAGATTAAGACCTCTTGT+TGG 0.450531 1_1:-16314287 Msa0010790:CDS
GAAGGGATGAACCACTCAAT+TGG 0.450600 1_1:-16313019 Msa0010790:CDS
ATGGAGGCTTTGAACACTTT+AGG 0.460171 1_1:-16311980 Msa0010790:CDS
AGTAACTGTGTATATGTTGA+TGG 0.466614 1_1:-16312350 Msa0010790:CDS
TGGTTGGGATGTTGTTGTGG+TGG 0.472495 1_1:-16314089 Msa0010790:CDS
GGAAAATATAGGAGAAGAAG+TGG 0.472548 1_1:-16312587 Msa0010790:CDS
TCTTGTTGGTTTGAATGGCT+GGG 0.473478 1_1:-16314273 Msa0010790:CDS
GATTCAATGTCTCTGATGAA+TGG 0.473958 1_1:+16312918 None:intergenic
AAGAAGCAAGAACATGTTGT+TGG 0.475916 1_1:-16312662 Msa0010790:CDS
GCTGGGATTACTGTGTCTAC+TGG 0.476054 1_1:-16314256 Msa0010790:CDS
GGCTTTGAACACTTTAGGCA+TGG 0.486692 1_1:-16311975 Msa0010790:CDS
ATGAATATTGCAGGCACAAG+TGG 0.489997 1_1:-16312080 Msa0010790:intron
TTATATATAGGTATCTAGAA+TGG 0.490580 1_1:-16314109 Msa0010790:intron
TCATGTTTCAAAACAAAAGC+AGG 0.492292 1_1:-16312273 Msa0010790:CDS
TAATAATCAATATATGTTTG+TGG 0.498103 1_1:-16312702 Msa0010790:CDS
CAGAATGAAGAAGAGGATGA+TGG 0.501916 1_1:-16312608 Msa0010790:CDS
TTCTCTTCCTCTCAGCAACA+AGG 0.506548 1_1:+16312543 None:intergenic
ATATAGGTATCTAGAATGGT+TGG 0.508602 1_1:-16314105 Msa0010790:intron
GGGAGTGAAAGCAACCAAAA+TGG 0.520448 1_1:-16314068 Msa0010790:CDS
TATAGGTATCTAGAATGGTT+GGG 0.521100 1_1:-16314104 Msa0010790:intron
TGGAAGTGGCTCAGATAGAT+GGG 0.522256 1_1:-16312060 Msa0010790:CDS
TGAGACAAGACCCTTGTGAC+TGG 0.522381 1_1:+16311931 None:intergenic
ATTGCAGGCACAAGTGGAAG+TGG 0.525672 1_1:-16312074 Msa0010790:intron
CACGGAACAAATCTTCATGC+TGG 0.531543 1_1:-16311705 Msa0010790:CDS
ACCTTGGTATTCTTCAGAGA+AGG 0.541843 1_1:+16312808 None:intergenic
GGAAATTAAGTGAAGATCAA+AGG 0.546606 1_1:-16314235 Msa0010790:intron
GAATGGTTGGGATGTTGTTG+TGG 0.554900 1_1:-16314092 Msa0010790:CDS
CAGGCACTGGAATCAAAACA+TGG 0.559119 1_1:+16313525 None:intergenic
CAGTGATCAGAATGAAGAAG+AGG 0.559858 1_1:-16312615 Msa0010790:CDS
TCAACGAGTCCACCAGGCAC+TGG 0.561965 1_1:+16313512 None:intergenic
TTGTTGCTGAGAGGAAGAGA+AGG 0.562094 1_1:-16312541 Msa0010790:CDS
ATGCAATCAAATCCAACTGT+AGG 0.573633 1_1:-16312977 Msa0010790:CDS
ATCAATTTCACAAAACCACC+TGG 0.575508 1_1:+16312001 None:intergenic
AAGAGCTCAACGAGTCCACC+AGG 0.577294 1_1:+16313506 None:intergenic
GATCCTGAAGAAAAGAACCT+TGG 0.582504 1_1:+16312792 None:intergenic
AAACAAAAGCAGGAAGATGT+TGG 0.583119 1_1:-16312263 Msa0010790:CDS
ATCTCAATGCATTGTCATGG+TGG 0.583356 1_1:-16313047 Msa0010790:CDS
TGACAAGCAGACACAGCAGA+TGG 0.586592 1_1:-16312231 Msa0010790:CDS
AAAGGAGAGTGAAATAGTTG+AGG 0.586665 1_1:-16311761 Msa0010790:CDS
CACATCTCAATGCATTGTCA+TGG 0.588350 1_1:-16313050 Msa0010790:CDS
TTGAATTGAAGCCAATTGAG+TGG 0.597436 1_1:+16313008 None:intergenic
TTCAATACAGATATGTCATG+TGG 0.598259 1_1:+16312893 None:intergenic
AGAGCTTCAAGATGAACTTG+AGG 0.601650 1_1:-16312396 Msa0010790:CDS
ACTGTAGGTGATGAAAATGA+TGG 0.604572 1_1:-16312962 Msa0010790:CDS
AATGTTCCAAAAGCAGAACA+TGG 0.606756 1_1:-16312299 Msa0010790:CDS
TCTCAAATCACACACAGAAG+AGG 0.606938 1_1:-16312753 Msa0010790:CDS
CAAAGAACCTTGTTGCTGAG+AGG 0.619036 1_1:-16312550 Msa0010790:CDS
CTTGAGGAAAATTCAGACAC+AGG 0.625559 1_1:-16312380 Msa0010790:CDS
TGCCACAGTAACCAGTCACA+AGG 0.625627 1_1:-16311942 Msa0010790:CDS
AGATGCTATTGAATTTGTGA+AGG 0.628469 1_1:-16312438 Msa0010790:CDS
CAGCCATTCAAACCAACAAG+AGG 0.632565 1_1:+16314275 None:intergenic
AGTGAAAGCAACCAAAATGG+TGG 0.646392 1_1:-16314065 Msa0010790:CDS
ATTCACTACTAGAGCTGACA+CGG 0.647595 1_1:-16311723 Msa0010790:CDS
TTCTTGGAACCAATGAACGA+AGG 0.654816 1_1:+16312492 None:intergenic
ACCCTTGTGACTGGTTACTG+TGG 0.657104 1_1:+16311940 None:intergenic
ATTGTCATGGTGGATCATGA+AGG 0.663490 1_1:-16313037 Msa0010790:CDS
TTGTCATGGTGGATCATGAA+GGG 0.669599 1_1:-16313036 Msa0010790:CDS
TGGGAATGAGTACTTTGTGA+AGG 0.678653 1_1:-16312041 Msa0010790:CDS
CAAGCAGACACAGCAGATGG+AGG 0.682677 1_1:-16312228 Msa0010790:intron
ACCTTCTCTGAAGAATACCA+AGG 0.692673 1_1:-16312809 Msa0010790:CDS
GCCACAGTAACCAGTCACAA+GGG 0.696830 1_1:-16311941 Msa0010790:CDS
AGGCACTGGAATCAAAACAT+GGG 0.706180 1_1:+16313526 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTAATAGAACAAAAAATA+TGG + chr1_1:16311815-16311834 None:intergenic 10.0%
!! AGTTATTAGTATATTTATTT+AGG + chr1_1:16312861-16312880 None:intergenic 10.0%
!!! ATGATATTAAATTTTTTTCT+TGG - chr1_1:16314181-16314200 Msa0010790:intron 10.0%
!!! TGATATTAAATTTTTTTCTT+GGG - chr1_1:16314182-16314201 Msa0010790:intron 10.0%
!!! ATTTGTTGGTTTTTATATAT+AGG - chr1_1:16311871-16311890 Msa0010790:intron 15.0%
!! AAGGATTATATATAGATAAA+GGG + chr1_1:16312112-16312131 None:intergenic 15.0%
!! AAAGGATTATATATAGATAA+AGG + chr1_1:16312113-16312132 None:intergenic 15.0%
!! ACTCAATATATCAATATATA+TGG + chr1_1:16312417-16312436 None:intergenic 15.0%
!! TGTGTATAATATAATATAAC+AGG - chr1_1:16312888-16312907 Msa0010790:CDS 15.0%
!! TATAATATAATATAACAGGT+TGG - chr1_1:16312892-16312911 Msa0010790:CDS 15.0%
!! TAATAATCAATATATGTTTG+TGG - chr1_1:16313290-16313309 Msa0010790:intron 15.0%
!!! TGTTATTAGTGTATAAATTT+TGG + chr1_1:16313811-16313830 None:intergenic 15.0%
!! AATTTATACACTAATAACAA+AGG - chr1_1:16313812-16313831 Msa0010790:intron 15.0%
!! ATATAATTATGAACAGAAAA+AGG - chr1_1:16314213-16314232 Msa0010790:intron 15.0%
!!! TAATTGTGATGTTAATTTGT+TGG - chr1_1:16311857-16311876 Msa0010790:intron 20.0%
!! TTATATATAGGTATCTAGAA+TGG - chr1_1:16311883-16311902 Msa0010790:intron 20.0%
!! ATTATATATAGATAAAGGGA+GGG + chr1_1:16312108-16312127 None:intergenic 20.0%
!! AGATGAATTAGTTGAAAAAT+AGG + chr1_1:16312356-16312375 None:intergenic 20.0%
!!! TTTTTCAACTAATTCATCTT+TGG - chr1_1:16312357-16312376 Msa0010790:CDS 20.0%
!! TCATTGAACGATATATTATA+AGG - chr1_1:16312553-16312572 Msa0010790:CDS 20.0%
!!! TAAGATCATGTTAATTTTGA+TGG - chr1_1:16312651-16312670 Msa0010790:CDS 20.0%
!!! CTTTTTTGAATTATCAAGTA+AGG - chr1_1:16312711-16312730 Msa0010790:CDS 20.0%
!!! GGAACATTGTTATTATTATT+TGG + chr1_1:16313681-16313700 None:intergenic 20.0%
!!! TATAAATTTTGGTATAAGCT+AGG + chr1_1:16313800-16313819 None:intergenic 20.0%
!! AAGTTAAGAAAATGATTCTA+AGG + chr1_1:16314112-16314131 None:intergenic 20.0%
!! AGACAAATTCAAATCAAAAT+AGG - chr1_1:16314148-16314167 Msa0010790:intron 20.0%
! TTTATATACCCTGAATCTAT+AGG + chr1_1:16312053-16312072 None:intergenic 25.0%
! GATTATATATAGATAAAGGG+AGG + chr1_1:16312109-16312128 None:intergenic 25.0%
! TATATGGAATTAGCTGAAAA+AGG + chr1_1:16312401-16312420 None:intergenic 25.0%
!!! ATATTGAGTACTATTTTTGC+AGG - chr1_1:16312428-16312447 Msa0010790:CDS 25.0%
!! TTTTTGCAGGAAACAATTAA+TGG - chr1_1:16312441-16312460 Msa0010790:CDS 25.0%
!! TTTTGCAGGAAACAATTAAT+GGG - chr1_1:16312442-16312461 Msa0010790:CDS 25.0%
! GGTCTAATTATGATATTGAA+GGG + chr1_1:16312588-16312607 None:intergenic 25.0%
!! ATTATCTAAGATTGTGATCT+TGG + chr1_1:16312624-16312643 None:intergenic 25.0%
!! GAATTATCAAGTAAGGTTTT+TGG - chr1_1:16312718-16312737 Msa0010790:CDS 25.0%
!!! CTCAAATGTTTTTAAAGTTG+AGG - chr1_1:16314080-16314099 Msa0010790:CDS 25.0%
GGAAATTAAGTGAAGATCAA+AGG - chr1_1:16311757-16311776 Msa0010790:CDS 30.0%
! ATATAGGTATCTAGAATGGT+TGG - chr1_1:16311887-16311906 Msa0010790:intron 30.0%
! TATAGGTATCTAGAATGGTT+GGG - chr1_1:16311888-16311907 Msa0010790:intron 30.0%
CTGTTCAATGAAGAGATTAA+AGG + chr1_1:16312131-16312150 None:intergenic 30.0%
CTTTAATCTCTTCATTGAAC+AGG - chr1_1:16312129-16312148 Msa0010790:intron 30.0%
! GAACTTACATGTAAAGTGTT+TGG + chr1_1:16312318-16312337 None:intergenic 30.0%
CACTTTACATGTAAGTTCAT+TGG - chr1_1:16312320-16312339 Msa0010790:CDS 30.0%
GGGTCTAATTATGATATTGA+AGG + chr1_1:16312589-16312608 None:intergenic 30.0%
!! TAAAAAAGCGTCAAAGATGT+TGG + chr1_1:16312771-16312790 None:intergenic 30.0%
TTCAATACAGATATGTCATG+TGG + chr1_1:16313102-16313121 None:intergenic 30.0%
!!! GCTTCTTTTTTGTGTCTAAT+GGG + chr1_1:16313317-16313336 None:intergenic 30.0%
!!! TGCTTCTTTTTTGTGTCTAA+TGG + chr1_1:16313318-16313337 None:intergenic 30.0%
!! AAGAGGATGATGGAAAATAT+AGG - chr1_1:16313394-16313413 Msa0010790:intron 30.0%
GTTATATAACCTTCGTTCAT+TGG - chr1_1:16313491-16313510 Msa0010790:intron 30.0%
AGATGCTATTGAATTTGTGA+AGG - chr1_1:16313554-16313573 Msa0010790:intron 30.0%
AGTAACTGTGTATATGTTGA+TGG - chr1_1:16313642-16313661 Msa0010790:intron 30.0%
TCATGTTTCAAAACAAAAGC+AGG - chr1_1:16313719-16313738 Msa0010790:intron 30.0%
CACATGAATATGAATATTGC+AGG - chr1_1:16313903-16313922 Msa0010790:intron 30.0%
! GATCACATGAGTTTGTTCTT+GGG + chr1_1:16312004-16312023 None:intergenic 35.0%
! AGATCACATGAGTTTGTTCT+TGG + chr1_1:16312005-16312024 None:intergenic 35.0%
TGAATCTATAGGTATGGAAG+TGG + chr1_1:16312042-16312061 None:intergenic 35.0%
ACTTCCATACCTATAGATTC+AGG - chr1_1:16312041-16312060 Msa0010790:CDS 35.0%
CTTCCATACCTATAGATTCA+GGG - chr1_1:16312042-16312061 Msa0010790:CDS 35.0%
ATACCCTGAATCTATAGGTA+TGG + chr1_1:16312048-16312067 None:intergenic 35.0%
TGAGCTCTTTGTAACTAAAC+AGG - chr1_1:16312500-16312519 Msa0010790:CDS 35.0%
!! GATCTTGGTGTTGTTAACAA+GGG + chr1_1:16312609-16312628 None:intergenic 35.0%
!! TGATCTTGGTGTTGTTAACA+AGG + chr1_1:16312610-16312629 None:intergenic 35.0%
TTGAATTGAAGCCAATTGAG+TGG + chr1_1:16312987-16313006 None:intergenic 35.0%
ATGCAATCAAATCCAACTGT+AGG - chr1_1:16313015-16313034 Msa0010790:CDS 35.0%
! TCATTTTCATCACCTACAGT+TGG + chr1_1:16313030-16313049 None:intergenic 35.0%
ACTGTAGGTGATGAAAATGA+TGG - chr1_1:16313030-16313049 Msa0010790:CDS 35.0%
GATTCAATGTCTCTGATGAA+TGG + chr1_1:16313077-16313096 None:intergenic 35.0%
! ATACCAAGGTTCTTTTCTTC+AGG - chr1_1:16313197-16313216 Msa0010790:intron 35.0%
AAGAAGCAAGAACATGTTGT+TGG - chr1_1:16313330-16313349 Msa0010790:intron 35.0%
GGAAAATATAGGAGAAGAAG+TGG - chr1_1:16313405-16313424 Msa0010790:intron 35.0%
TATAGGAGAAGAAGTGGAAA+AGG - chr1_1:16313411-16313430 Msa0010790:intron 35.0%
GAAGGAAGAAACTGAATGAT+AGG - chr1_1:16313469-16313488 Msa0010790:intron 35.0%
!! CTATCAAGCTTTGAGATTCT+TGG + chr1_1:16313519-16313538 None:intergenic 35.0%
! CTTGATAGAGCATCTATTCT+TGG - chr1_1:16313531-16313550 Msa0010790:CDS 35.0%
AATGTTCCAAAAGCAGAACA+TGG - chr1_1:16313693-16313712 Msa0010790:intron 35.0%
! TGAAATCCATGTTCTGCTTT+TGG + chr1_1:16313702-16313721 None:intergenic 35.0%
AAACAAAAGCAGGAAGATGT+TGG - chr1_1:16313729-16313748 Msa0010790:intron 35.0%
ATCAATTTCACAAAACCACC+TGG + chr1_1:16313994-16314013 None:intergenic 35.0%
!!! AGGTGGTTTTGTGAAATTGA+TGG - chr1_1:16313993-16314012 Msa0010790:intron 35.0%
!!! TGGTTTTGTGAAATTGATGG+AGG - chr1_1:16313996-16314015 Msa0010790:intron 35.0%
AAAGGAGAGTGAAATAGTTG+AGG - chr1_1:16314231-16314250 Msa0010790:intron 35.0%
GAGAGATTAAGACCTCTTGT+TGG - chr1_1:16311705-16311724 Msa0010790:CDS 40.0%
!! AGACCTCTTGTTGGTTTGAA+TGG - chr1_1:16311714-16311733 Msa0010790:CDS 40.0%
!! TCTTGTTGGTTTGAATGGCT+GGG - chr1_1:16311719-16311738 Msa0010790:CDS 40.0%
AGTGAAAGCAACCAAAATGG+TGG - chr1_1:16311927-16311946 Msa0010790:CDS 40.0%
! GATGTTCTTCTCCACCATTT+TGG + chr1_1:16311941-16311960 None:intergenic 40.0%
! TTTTCCCTGTCTCTTCATGT+AGG - chr1_1:16311961-16311980 Msa0010790:CDS 40.0%
TTTCCCTGTCTCTTCATGTA+GGG - chr1_1:16311962-16311981 Msa0010790:CDS 40.0%
TATCCCTACATGAAGAGACA+GGG + chr1_1:16311968-16311987 None:intergenic 40.0%
AGGTATGGAAGTGGAAAGTT+GGG + chr1_1:16312033-16312052 None:intergenic 40.0%
TAGGTATGGAAGTGGAAAGT+TGG + chr1_1:16312034-16312053 None:intergenic 40.0%
ATTGAACAGGATTCATGCAC+AGG - chr1_1:16312142-16312161 Msa0010790:intron 40.0%
GTTGAACTATCCCAATAGCT+TGG - chr1_1:16312290-16312309 Msa0010790:CDS 40.0%
GTGTTTGGATCCAAGCTATT+GGG + chr1_1:16312303-16312322 None:intergenic 40.0%
AGTGTTTGGATCCAAGCTAT+TGG + chr1_1:16312304-16312323 None:intergenic 40.0%
!! AGGCACTGGAATCAAAACAT+GGG + chr1_1:16312469-16312488 None:intergenic 40.0%
CACATCTCAATGCATTGTCA+TGG - chr1_1:16312942-16312961 Msa0010790:CDS 40.0%
ATCTCAATGCATTGTCATGG+TGG - chr1_1:16312945-16312964 Msa0010790:CDS 40.0%
!! ATTGTCATGGTGGATCATGA+AGG - chr1_1:16312955-16312974 Msa0010790:CDS 40.0%
!! TTGTCATGGTGGATCATGAA+GGG - chr1_1:16312956-16312975 Msa0010790:CDS 40.0%
! ACCTTCTCTGAAGAATACCA+AGG - chr1_1:16313183-16313202 Msa0010790:intron 40.0%
ACCTTGGTATTCTTCAGAGA+AGG + chr1_1:16313187-16313206 None:intergenic 40.0%
GATCCTGAAGAAAAGAACCT+TGG + chr1_1:16313203-16313222 None:intergenic 40.0%
TCTCAAATCACACACAGAAG+AGG - chr1_1:16313239-16313258 Msa0010790:intron 40.0%
CAGTGATCAGAATGAAGAAG+AGG - chr1_1:16313377-16313396 Msa0010790:intron 40.0%
CAGAATGAAGAAGAGGATGA+TGG - chr1_1:16313384-16313403 Msa0010790:intron 40.0%
CAGCAACAAGGTTCTTTGAT+TGG + chr1_1:16313440-16313459 None:intergenic 40.0%
TTCTTGGAACCAATGAACGA+AGG + chr1_1:16313503-16313522 None:intergenic 40.0%
AGAGCTTCAAGATGAACTTG+AGG - chr1_1:16313596-16313615 Msa0010790:intron 40.0%
CTTGAGGAAAATTCAGACAC+AGG - chr1_1:16313612-16313631 Msa0010790:intron 40.0%
ATGAATATTGCAGGCACAAG+TGG - chr1_1:16313912-16313931 Msa0010790:intron 40.0%
TGGGAATGAGTACTTTGTGA+AGG - chr1_1:16313951-16313970 Msa0010790:intron 40.0%
!! ATGGAGGCTTTGAACACTTT+AGG - chr1_1:16314012-16314031 Msa0010790:intron 40.0%
ATTCACTACTAGAGCTGACA+CGG - chr1_1:16314269-16314288 Msa0010790:CDS 40.0%
CAAATCTTCATGCTGGAACT+TGG - chr1_1:16314294-16314313 Msa0010790:CDS 40.0%
CAGCCATTCAAACCAACAAG+AGG + chr1_1:16311720-16311739 None:intergenic 45.0%
!! CTCTTGTTGGTTTGAATGGC+TGG - chr1_1:16311718-16311737 Msa0010790:CDS 45.0%
GAATGGTTGGGATGTTGTTG+TGG - chr1_1:16311900-16311919 Msa0010790:intron 45.0%
GGGAGTGAAAGCAACCAAAA+TGG - chr1_1:16311924-16311943 Msa0010790:CDS 45.0%
GTATCCCTACATGAAGAGAC+AGG + chr1_1:16311969-16311988 None:intergenic 45.0%
!! CAGGCACTGGAATCAAAACA+TGG + chr1_1:16312470-16312489 None:intergenic 45.0%
!!! CATGTTTTGATTCCAGTGCC+TGG - chr1_1:16312468-16312487 Msa0010790:CDS 45.0%
GAAGGGATGAACCACTCAAT+TGG - chr1_1:16312973-16312992 Msa0010790:CDS 45.0%
CAAAGAACCTTGTTGCTGAG+AGG - chr1_1:16313442-16313461 Msa0010790:intron 45.0%
TTCTCTTCCTCTCAGCAACA+AGG + chr1_1:16313452-16313471 None:intergenic 45.0%
TTGTTGCTGAGAGGAAGAGA+AGG - chr1_1:16313451-16313470 Msa0010790:intron 45.0%
TGGAAGTGGCTCAGATAGAT+GGG - chr1_1:16313932-16313951 Msa0010790:intron 45.0%
!!! TGAAGGTGTTTTGTGAGCAC+AGG - chr1_1:16313968-16313987 Msa0010790:intron 45.0%
!! GGCTTTGAACACTTTAGGCA+TGG - chr1_1:16314017-16314036 Msa0010790:intron 45.0%
CACGGAACAAATCTTCATGC+TGG - chr1_1:16314287-16314306 Msa0010790:CDS 45.0%
GCTGGGATTACTGTGTCTAC+TGG - chr1_1:16311736-16311755 Msa0010790:CDS 50.0%
TGGTTGGGATGTTGTTGTGG+TGG - chr1_1:16311903-16311922 Msa0010790:intron 50.0%
GGTTGGGATGTTGTTGTGGT+GGG - chr1_1:16311904-16311923 Msa0010790:intron 50.0%
!!! GTTTTGATTCCAGTGCCTGG+TGG - chr1_1:16312471-16312490 Msa0010790:CDS 50.0%
TGACAAGCAGACACAGCAGA+TGG - chr1_1:16313761-16313780 Msa0010790:intron 50.0%
ATTGCAGGCACAAGTGGAAG+TGG - chr1_1:16313918-16313937 Msa0010790:intron 50.0%
GTGGAAGTGGCTCAGATAGA+TGG - chr1_1:16313931-16313950 Msa0010790:intron 50.0%
TGCCACAGTAACCAGTCACA+AGG - chr1_1:16314050-16314069 Msa0010790:CDS 50.0%
GCCACAGTAACCAGTCACAA+GGG - chr1_1:16314051-16314070 Msa0010790:CDS 50.0%
! ACCCTTGTGACTGGTTACTG+TGG + chr1_1:16314055-16314074 None:intergenic 50.0%
TGAGACAAGACCCTTGTGAC+TGG + chr1_1:16314064-16314083 None:intergenic 50.0%
AAGAGCTCAACGAGTCCACC+AGG + chr1_1:16312489-16312508 None:intergenic 55.0%
CAAGCAGACACAGCAGATGG+AGG - chr1_1:16313764-16313783 Msa0010790:intron 55.0%
! GTGTTTTGTGAGCACAGGCC+AGG - chr1_1:16313973-16313992 Msa0010790:intron 55.0%
! TTTTGTGAGCACAGGCCAGG+TGG - chr1_1:16313976-16313995 Msa0010790:intron 55.0%
TCAACGAGTCCACCAGGCAC+TGG + chr1_1:16312483-16312502 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 16311690 16314324 16311690 ID=Msa0010790;Name=Msa0010790
chr1_1 mRNA 16311690 16314324 16311690 ID=Msa0010790-mRNA-1;Parent=Msa0010790;Name=Msa0010790-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0|0|1|1|1|6|0|461
chr1_1 exon 16314236 16314324 16314236 ID=Msa0010790-mRNA-1:exon:5988;Parent=Msa0010790-mRNA-1
chr1_1 exon 16314046 16314121 16314046 ID=Msa0010790-mRNA-1:exon:5987;Parent=Msa0010790-mRNA-1
chr1_1 exon 16313493 16313564 16313493 ID=Msa0010790-mRNA-1:exon:5986;Parent=Msa0010790-mRNA-1
chr1_1 exon 16312229 16313104 16312229 ID=Msa0010790-mRNA-1:exon:5985;Parent=Msa0010790-mRNA-1
chr1_1 exon 16311913 16312089 16311913 ID=Msa0010790-mRNA-1:exon:5984;Parent=Msa0010790-mRNA-1
chr1_1 exon 16311690 16311785 16311690 ID=Msa0010790-mRNA-1:exon:5983;Parent=Msa0010790-mRNA-1
chr1_1 CDS 16314236 16314324 16314236 ID=Msa0010790-mRNA-1:cds;Parent=Msa0010790-mRNA-1
chr1_1 CDS 16314046 16314121 16314046 ID=Msa0010790-mRNA-1:cds;Parent=Msa0010790-mRNA-1
chr1_1 CDS 16313493 16313564 16313493 ID=Msa0010790-mRNA-1:cds;Parent=Msa0010790-mRNA-1
chr1_1 CDS 16312229 16313104 16312229 ID=Msa0010790-mRNA-1:cds;Parent=Msa0010790-mRNA-1
chr1_1 CDS 16311913 16312089 16311913 ID=Msa0010790-mRNA-1:cds;Parent=Msa0010790-mRNA-1
chr1_1 CDS 16311690 16311785 16311690 ID=Msa0010790-mRNA-1:cds;Parent=Msa0010790-mRNA-1
Gene Sequence

>Msa0010790

ATGCAAAACTTTACTGAGAGATTAAGACCTCTTGTTGGTTTGAATGGCTGGGATTACTGTGTCTACTGGAAATTAAGTGAAGATCAAAGGTATCTAGAATGGTTGGGATGTTGTTGTGGTGGGAGTGAAAGCAACCAAAATGGTGGAGAAGAACATCTTTTCCCTGAAACAATTAATGGGACCCATGTTTTGATTCCAGTGCCTGGTGGACTCGTTGAGCTCTTTGTAACTAAACAGGTTGGTGAAGATCAAAATGTAATAGATTTTATCACATCTCAATGCATTGTCATGGTGGATCATGAAGGGATGAACCACTCAATTGGCTTCAATTCAATGAGCAATATGCAATCAAATCCAACTGTAGGTGATGAAAATGATGGAAATAATACAAACAATATTTTCCATTCATCAGAGACATTGAATCTTCCACATGACATATCTGTATTGAACTTCATGCAACAGTTCAATTACAGTTACAATCAACAACAAAACAGAATCAAGAACGACGAAACCTTCTCTGAAGAATACCAAGGTTCTTTTCTTCAGGATCAAGAAAACAACAACACTCTCAAATCACACACAGAAGAGGTGCATGATAACAAAAGCTTGATGACAGATAATAATCAATATATGTTTGTGGACCCATTAGACACAAAAAAGAAGCAAGAACATGTTGTTGGTAGAGCAGATTCTATGTCAGATTGCAGTGATCAGAATGAAGAAGAGGATGATGGAAAATATAGGAGAAGAAGTGGAAAAGGAAACCAATCAAAGAACCTTGTTGCTGAGAGGAAGAGAAGGAAGAAACTGAATGATAGGTTATATAACCTTCGTTCATTGGTTCCAAGAATCTCAAAGCTTGATAGAGCATCTATTCTTGGAGATGCTATTGAATTTGTGAAGGATTTGCAGAAGCAAGTGAAAGAGCTTCAAGATGAACTTGAGGAAAATTCAGACACAGGAACTGAAAGTAACTGTGTATATGTTGATGGTGTTCAAGTTCAACCAAATAATAATAACAATGTTCCAAAAGCAGAACATGGATTTCATGTTTCAAAACAAAAGCAGGAAGATGTTGGTACTGTTACTGACAAGCAGACACAGCAGATGGAGGCACAAGTGGAAGTGGCTCAGATAGATGGGAATGAGTACTTTGTGAAGGTGTTTTGTGAGCACAGGCCAGGTGGTTTTGTGAAATTGATGGAGGCTTTGAACACTTTAGGCATGGATGTAATGCATGCCACAGTAACCAGTCACAAGGGTCTTGTCTCAAATGTTTTTAAAGTTGAGAAAAAGGAGAGTGAAATAGTTGAGGCTGAAGAAGTTAGAGATTCACTACTAGAGCTGACACGGAACAAATCTTCATGCTGGAACTTGGAATCATGA

Protein sequence

>Msa0010790

MQNFTERLRPLVGLNGWDYCVYWKLSEDQRYLEWLGCCCGGSESNQNGGEEHLFPETINGTHVLIPVPGGLVELFVTKQVGEDQNVIDFITSQCIVMVDHEGMNHSIGFNSMSNMQSNPTVGDENDGNNTNNIFHSSETLNLPHDISVLNFMQQFNYSYNQQQNRIKNDETFSEEYQGSFLQDQENNNTLKSHTEEVHDNKSLMTDNNQYMFVDPLDTKKKQEHVVGRADSMSDCSDQNEEEDDGKYRRRSGKGNQSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQKQVKELQDELEENSDTGTESNCVYVDGVQVQPNNNNNVPKAEHGFHVSKQKQEDVGTVTDKQTQQMEAQVEVAQIDGNEYFVKVFCEHRPGGFVKLMEALNTLGMDVMHATVTSHKGLVSNVFKVEKKESEIVEAEEVRDSLLELTRNKSSCWNLES*