Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0011260 | sp|Q9XHZ8|Y1178_ARATH | 71.646 | 328 | 89 | 1 | 1 | 328 | 1 | 324 | 0.0 | 507 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0011260 | TR | TRAF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0011260 | MtrunA17_Chr1g0159831 | 98.182 | 330 | 4 | 1 | 1 | 328 | 1 | 330 | 0.0 | 671 |
| Msa0011260 | MtrunA17_Chr3g0124921 | 72.866 | 328 | 82 | 4 | 1 | 326 | 1 | 323 | 1.69e-176 | 491 |
| Msa0011260 | MtrunA17_Chr3g0103031 | 50.755 | 331 | 157 | 3 | 1 | 328 | 1 | 328 | 1.99e-119 | 347 |
| Msa0011260 | MtrunA17_Chr5g0447111 | 44.615 | 325 | 175 | 3 | 5 | 328 | 9 | 329 | 1.47e-98 | 294 |
| Msa0011260 | MtrunA17_Chr5g0447191 | 39.572 | 187 | 109 | 2 | 140 | 324 | 3 | 187 | 1.36e-41 | 143 |
| Msa0011260 | MtrunA17_Chr4g0029841 | 30.723 | 166 | 107 | 2 | 160 | 325 | 122 | 279 | 8.25e-21 | 90.5 |
| Msa0011260 | MtrunA17_Chr7g0259501 | 29.448 | 163 | 102 | 3 | 142 | 291 | 182 | 344 | 4.82e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0011260 | AT1G21780.2 | 71.646 | 328 | 89 | 1 | 1 | 328 | 1 | 324 | 0.0 | 507 |
| Msa0011260 | AT1G21780.1 | 71.646 | 328 | 89 | 1 | 1 | 328 | 1 | 324 | 0.0 | 507 |
| Msa0011260 | AT1G55760.1 | 47.892 | 332 | 164 | 5 | 1 | 328 | 1 | 327 | 1.80e-109 | 322 |
| Msa0011260 | AT2G39760.4 | 30.719 | 153 | 95 | 1 | 150 | 291 | 179 | 331 | 2.85e-13 | 70.1 |
| Msa0011260 | AT2G39760.3 | 30.719 | 153 | 95 | 1 | 150 | 291 | 179 | 331 | 2.85e-13 | 70.1 |
| Msa0011260 | AT2G39760.2 | 30.719 | 153 | 95 | 1 | 150 | 291 | 179 | 331 | 3.02e-13 | 70.1 |
| Msa0011260 | AT2G39760.1 | 30.719 | 153 | 95 | 1 | 150 | 291 | 179 | 331 | 6.20e-13 | 69.3 |
Find 83 sgRNAs with CRISPR-Local
Find 319 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCCTTTCAAACTTGGTATT+TGG | 0.128764 | 1_1:+16986079 | Msa0011260:CDS |
| CGCAACCTCTCCTGTGTTTC+AGG | 0.153472 | 1_1:+16989367 | Msa0011260:CDS |
| CAATAAAACCCGAAGATTTC+TGG | 0.200729 | 1_1:+16989492 | Msa0011260:CDS |
| CAATGGAAAATCGACAATTT+TGG | 0.203214 | 1_1:+16986033 | Msa0011260:CDS |
| TTCAAGAAGTGCTTACAATT+TGG | 0.210270 | 1_1:+16989774 | Msa0011260:CDS |
| AGTGCTTACAATTTGGAAAT+AGG | 0.211006 | 1_1:+16989781 | Msa0011260:CDS |
| TTGTATCTTGTAGTATGATA+TGG | 0.246533 | 1_1:+16989833 | Msa0011260:three_prime_UTR |
| TTCGCATTCTTATTTGATTT+CGG | 0.290853 | 1_1:+16989677 | Msa0011260:CDS |
| TGAACCTTCGCGTGTTTCTA+AGG | 0.294946 | 1_1:+16986237 | Msa0011260:CDS |
| CTGTGCTTCCAGAAATCTTC+GGG | 0.311859 | 1_1:-16989500 | None:intergenic |
| CCAGACAGATACATGTTTGT+TGG | 0.357022 | 1_1:-16985878 | None:intergenic |
| GGTCTAGTGCGTTAGGTTGT+TGG | 0.358179 | 1_1:+16985899 | Msa0011260:five_prime_UTR |
| TTAGAAACACGCGAAGGTTC+AGG | 0.373550 | 1_1:-16986235 | None:intergenic |
| AGAAGAAGAAGAAGCAGTAT+TGG | 0.384918 | 1_1:-16986296 | None:intergenic |
| GTCTAGTGCGTTAGGTTGTT+GGG | 0.387326 | 1_1:+16985900 | Msa0011260:five_prime_UTR |
| AAGCACAGGCTGGCTTTGCT+TGG | 0.389834 | 1_1:+16989515 | Msa0011260:CDS |
| TCAAACTTGGTATTTGGAAC+TGG | 0.400132 | 1_1:+16986085 | Msa0011260:CDS |
| CAATTTCCCGATTAGCTCAA+TGG | 0.401221 | 1_1:+16986016 | Msa0011260:CDS |
| AAATCAGACCCTTTCAAACT+TGG | 0.408826 | 1_1:+16986072 | Msa0011260:CDS |
| CGAAGAATGAAACGAGCAAT+AGG | 0.409761 | 1_1:-16986268 | None:intergenic |
| CCTGTGCTTCCAGAAATCTT+CGG | 0.410951 | 1_1:-16989501 | None:intergenic |
| CTTTCTTCAACTTGTGCAGC+TGG | 0.413291 | 1_1:-16989649 | None:intergenic |
| TTTACTTTGTATTATAGTAC+TGG | 0.422917 | 1_1:+16989877 | Msa0011260:three_prime_UTR |
| ATTTGTCGATAGAGAGAAAC+AGG | 0.424241 | 1_1:+16986191 | Msa0011260:CDS |
| GAACCTGTGATGACTTTGTC+TGG | 0.430022 | 1_1:+16988834 | Msa0011260:CDS |
| AGGGGAAATGTAAAATTTGC+GGG | 0.434591 | 1_1:-16986323 | None:intergenic |
| CTGTTATTTAGTTATATAAG+TGG | 0.449259 | 1_1:+16989967 | Msa0011260:three_prime_UTR |
| GTTATGTCATTGAACTATAT+AGG | 0.452790 | 1_1:+16989803 | Msa0011260:three_prime_UTR |
| TCGAGAGGCTTAATGAGGCT+TGG | 0.458763 | 1_1:+16989621 | Msa0011260:CDS |
| AACCGCAGATGGCACACTTA+AGG | 0.459877 | 1_1:+16989325 | Msa0011260:CDS |
| TTCCAAATACCAAGTTTGAA+AGG | 0.463827 | 1_1:-16986081 | None:intergenic |
| TGATACGAGGCCTGAAACAC+AGG | 0.466490 | 1_1:-16989377 | None:intergenic |
| TCCAAATACCAAGTTTGAAA+GGG | 0.471833 | 1_1:-16986080 | None:intergenic |
| ATCAGATGGCCATATGGAAC+TGG | 0.472723 | 1_1:-16989213 | None:intergenic |
| CCTGTGGATACTACATTCCT+TGG | 0.490016 | 1_1:+16988857 | Msa0011260:CDS |
| GTATCTCAGAAGGGCCGTGC+AGG | 0.498716 | 1_1:-16989459 | None:intergenic |
| CCGAGTTAAGATCTTCAAGT+AGG | 0.498960 | 1_1:-16989589 | None:intergenic |
| TCTGTCTGGTCTAGTGCGTT+AGG | 0.502496 | 1_1:+16985892 | Msa0011260:five_prime_UTR |
| CATTTGACATCTTAACAGAA+AGG | 0.510023 | 1_1:-16989942 | None:intergenic |
| AGATTTCTGGAAGCACAGGC+TGG | 0.511646 | 1_1:+16989505 | Msa0011260:CDS |
| CTTGTGACATGTCTTCTATG+TGG | 0.517852 | 1_1:-16989433 | None:intergenic |
| CCAACAAACATGTATCTGTC+TGG | 0.518769 | 1_1:+16985878 | Msa0011260:five_prime_UTR |
| CAGGGGAAATGTAAAATTTG+CGG | 0.522009 | 1_1:-16986324 | None:intergenic |
| CCTACTTGAAGATCTTAACT+CGG | 0.524632 | 1_1:+16989589 | Msa0011260:CDS |
| CCGAAGATTTCTGGAAGCAC+AGG | 0.532000 | 1_1:+16989501 | Msa0011260:CDS |
| TTCCATACATGTATCTCAGA+AGG | 0.534119 | 1_1:-16989469 | None:intergenic |
| GTAATGCTACAGTTCATGAA+AGG | 0.537922 | 1_1:+16988804 | Msa0011260:intron |
| GTGGAGAAGCCAGTTCCATA+TGG | 0.542653 | 1_1:+16989204 | Msa0011260:CDS |
| CTGAAACACAGGAGAGGTTG+CGG | 0.553064 | 1_1:-16989366 | None:intergenic |
| TGTTCTCGAGAGGCTTAATG+AGG | 0.554216 | 1_1:+16989616 | Msa0011260:CDS |
| CAGCTGCACAAGTTGAAGAA+AGG | 0.554405 | 1_1:+16989650 | Msa0011260:CDS |
| GCCCTTCTGAGATACATGTA+TGG | 0.555410 | 1_1:+16989467 | Msa0011260:CDS |
| ACAAAACATGGGAGATTCGA+AGG | 0.560639 | 1_1:+16985987 | Msa0011260:exon |
| TAATGCTACAGTTCATGAAA+GGG | 0.560737 | 1_1:+16988805 | Msa0011260:intron |
| AGTTCCATATGGCCATCTGA+TGG | 0.561027 | 1_1:+16989215 | Msa0011260:CDS |
| CAAGCATACGAGAGAGGCAT+CGG | 0.563620 | 1_1:-16989271 | None:intergenic |
| AAACAAAACAAAACAAAACA+TGG | 0.565821 | 1_1:+16985975 | Msa0011260:exon |
| TGATGACTTTGTCTGGCCTG+TGG | 0.574666 | 1_1:+16988841 | Msa0011260:CDS |
| AATTAGAGACTCACATTCAG+AGG | 0.576553 | 1_1:-16988923 | None:intergenic |
| AGAGACTCACATTCAGAGGA+TGG | 0.576688 | 1_1:-16988919 | None:intergenic |
| CTCACTATTATAACCGCAGA+TGG | 0.582345 | 1_1:+16989314 | Msa0011260:CDS |
| CATTCAGAGGATGGATCTTG+AGG | 0.589078 | 1_1:-16988910 | None:intergenic |
| CATCAATAATCAAGCGACCA+AGG | 0.591316 | 1_1:-16988874 | None:intergenic |
| GTGAACGGTGCATACCAGCT+TGG | 0.595643 | 1_1:+16985813 | Msa0011260:five_prime_UTR |
| CTACTTGAAGATCTTAACTC+GGG | 0.596940 | 1_1:+16989590 | Msa0011260:CDS |
| CCAAGGAATGTAGTATCCAC+AGG | 0.598731 | 1_1:-16988857 | None:intergenic |
| TGATCTCAAAGACGCATGCG+AGG | 0.608738 | 1_1:+16989562 | Msa0011260:CDS |
| TCTGATTTCTTGTAAGAACA+TGG | 0.619813 | 1_1:-16986057 | None:intergenic |
| TTCACTGCTGCTGTGATACG+AGG | 0.620310 | 1_1:-16989390 | None:intergenic |
| AGGCCAGACAAAGTCATCAC+AGG | 0.625083 | 1_1:-16988837 | None:intergenic |
| ATGGACTTAACTTGAGTGAA+CGG | 0.627013 | 1_1:+16985798 | None:intergenic |
| AGCCTTAAGTGTGCCATCTG+CGG | 0.628227 | 1_1:-16989327 | None:intergenic |
| CTTTGTCAAGCATACGAGAG+AGG | 0.628419 | 1_1:-16989277 | None:intergenic |
| AGAATGAAACGAGCAATAGG+AGG | 0.635724 | 1_1:-16986265 | None:intergenic |
| AACAAAACAAAACAAAACAT+GGG | 0.638409 | 1_1:+16985976 | Msa0011260:exon |
| TCCATACATGTATCTCAGAA+GGG | 0.640688 | 1_1:-16989468 | None:intergenic |
| ACTCGGGAAATGTTCTCGAG+AGG | 0.641157 | 1_1:+16989606 | Msa0011260:CDS |
| GCAGCTAATAAGTACGACAT+CGG | 0.686940 | 1_1:+16989539 | Msa0011260:CDS |
| CATCTGCGGTTATAATAGTG+AGG | 0.691773 | 1_1:-16989313 | None:intergenic |
| CGAGGCCTGAAACACAGGAG+AGG | 0.710966 | 1_1:-16989372 | None:intergenic |
| CATGTCACAAGAATCCTGCA+CGG | 0.721067 | 1_1:+16989445 | Msa0011260:CDS |
| GGAAATGTAAAATTTGCGGG+AGG | 0.721522 | 1_1:-16986320 | None:intergenic |
| TGTTCCTTAGAAACACGCGA+AGG | 0.729696 | 1_1:-16986241 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCTTTATAATGTAAAAAAA+TGG | + | chr1_1:16988039-16988058 | Msa0011260:intron | 10.0% |
| !! | TCTTTATAATGTAAAAAAAT+GGG | + | chr1_1:16988040-16988059 | Msa0011260:intron | 10.0% |
| !!! | ATTATACTATGTTGAATTTT+TGG | + | chr1_1:16986136-16986155 | Msa0011260:intron | 15.0% |
| !!! | TTATACTATGTTGAATTTTT+GGG | + | chr1_1:16986137-16986156 | Msa0011260:intron | 15.0% |
| !! | ATGAAAATTATTTGTCAATT+TGG | + | chr1_1:16986725-16986744 | Msa0011260:intron | 15.0% |
| !! | TTTATATTTAAATAGAGAAC+TGG | + | chr1_1:16988404-16988423 | Msa0011260:intron | 15.0% |
| !! | ATAAAAAAAACTACAATGTT+GGG | - | chr1_1:16988481-16988500 | None:intergenic | 15.0% |
| !!! | ACTTATTTTTTGCAAATTTA+AGG | - | chr1_1:16988709-16988728 | None:intergenic | 15.0% |
| !!! | TTAACATTTGATCTTTTTTT+TGG | + | chr1_1:16989168-16989187 | Msa0011260:intron | 15.0% |
| !! | AAACAAAACAAAACAAAACA+TGG | + | chr1_1:16985975-16985994 | Msa0011260:exon | 20.0% |
| !! | AACAAAACAAAACAAAACAT+GGG | + | chr1_1:16985976-16985995 | Msa0011260:exon | 20.0% |
| !!! | ATTTGAAATACTAATAGAGT+CGG | + | chr1_1:16986584-16986603 | Msa0011260:intron | 20.0% |
| !!! | CTTTTGTTAATAAGAAGTTT+AGG | + | chr1_1:16986784-16986803 | Msa0011260:intron | 20.0% |
| !!! | ATAAATTTTGTGAACTAGAT+TGG | + | chr1_1:16987508-16987527 | Msa0011260:intron | 20.0% |
| !! | TAATTAAAGGTTCTTATTGT+AGG | + | chr1_1:16987700-16987719 | Msa0011260:intron | 20.0% |
| !! | AATTAAAGGTTCTTATTGTA+GGG | + | chr1_1:16987701-16987720 | Msa0011260:intron | 20.0% |
| !! | TTTGTTAACAATCTAAATGA+TGG | + | chr1_1:16987962-16987981 | Msa0011260:intron | 20.0% |
| !! | GTAAGATCTAAACAATATTA+TGG | - | chr1_1:16988300-16988319 | None:intergenic | 20.0% |
| !! | GATAAAAAAAACTACAATGT+TGG | - | chr1_1:16988482-16988501 | None:intergenic | 20.0% |
| !! | CAAAAAAAAAAAAGTTTCTG+CGG | + | chr1_1:16988504-16988523 | Msa0011260:intron | 20.0% |
| !! | TATAGATATATGCTACTATA+CGG | + | chr1_1:16988612-16988631 | Msa0011260:intron | 20.0% |
| !! | TTAGTAAACAAAAGTAAAGA+GGG | - | chr1_1:16988639-16988658 | None:intergenic | 20.0% |
| !! | TTTAGTAAACAAAAGTAAAG+AGG | - | chr1_1:16988640-16988659 | None:intergenic | 20.0% |
| !! | TGATCTAACTAGATATAATA+TGG | + | chr1_1:16988982-16989001 | Msa0011260:intron | 20.0% |
| !! | ACAAATAGATAGTTATAGAA+CGG | - | chr1_1:16989035-16989054 | None:intergenic | 20.0% |
| !!! | ATTGTTTTGAGTTACTTAAT+AGG | + | chr1_1:16989070-16989089 | Msa0011260:intron | 20.0% |
| !! | TTTACTTTGTATTATAGTAC+TGG | + | chr1_1:16989877-16989896 | Msa0011260:three_prime_UTR | 20.0% |
| !!! | CTGTTATTTAGTTATATAAG+TGG | + | chr1_1:16989967-16989986 | Msa0011260:three_prime_UTR | 20.0% |
| !!! | GTTTTGTTTTGTTTTGTTTC+AGG | - | chr1_1:16985974-16985993 | None:intergenic | 25.0% |
| !!! | TTTACTATGTTGTTGTTTTC+AGG | + | chr1_1:16986167-16986186 | Msa0011260:intron | 25.0% |
| !! | AGTGTCTCATTAGTTTATAA+AGG | + | chr1_1:16986499-16986518 | Msa0011260:intron | 25.0% |
| ! | TTGTCAAAAGTTTCTCAATT+AGG | - | chr1_1:16986552-16986571 | None:intergenic | 25.0% |
| !! | TTTGAAATACTAATAGAGTC+GGG | + | chr1_1:16986585-16986604 | Msa0011260:intron | 25.0% |
| ! | TAACTCATCTTTACAAAAAC+CGG | - | chr1_1:16986697-16986716 | None:intergenic | 25.0% |
| ! | TACTAATAGCTAATAAAGGT+TGG | - | chr1_1:16987061-16987080 | None:intergenic | 25.0% |
| ! | AACCTTTATTAGCTATTAGT+AGG | + | chr1_1:16987060-16987079 | Msa0011260:intron | 25.0% |
| ! | ATCCTACTAATAGCTAATAA+AGG | - | chr1_1:16987065-16987084 | None:intergenic | 25.0% |
| ! | ATTCTCTAAACTATCAATAG+TGG | - | chr1_1:16987318-16987337 | None:intergenic | 25.0% |
| !! | ATTGATAGTTTAGAGAATGA+AGG | + | chr1_1:16987320-16987339 | Msa0011260:intron | 25.0% |
| !!! | AGAATGAAGGTTTTTTATGA+CGG | + | chr1_1:16987333-16987352 | Msa0011260:intron | 25.0% |
| !! | ACTCACGATTTTCAATTTAT+GGG | + | chr1_1:16987469-16987488 | Msa0011260:intron | 25.0% |
| ! | GAGTAAAGTGTGATAATTAA+AGG | + | chr1_1:16987687-16987706 | Msa0011260:intron | 25.0% |
| !!! | TTTAGATTATTTTTCCCCAT+TGG | + | chr1_1:16987736-16987755 | Msa0011260:intron | 25.0% |
| !! | TATTGAATGGAATGCATTTT+AGG | + | chr1_1:16987910-16987929 | Msa0011260:intron | 25.0% |
| ! | GATTGTTAACAAACAACAAT+AGG | - | chr1_1:16987955-16987974 | None:intergenic | 25.0% |
| ! | TGTACATACACTACAAAATT+AGG | + | chr1_1:16988378-16988397 | Msa0011260:intron | 25.0% |
| !!! | CGCAGAAACTTTTTTTTTTT+TGG | - | chr1_1:16988506-16988525 | None:intergenic | 25.0% |
| !!! | ATTAGCTCTGTATTTATTGT+CGG | - | chr1_1:16988674-16988693 | None:intergenic | 25.0% |
| ! | CAATAAATACAGAGCTAATT+TGG | + | chr1_1:16988675-16988694 | Msa0011260:intron | 25.0% |
| !! | TTCGCATTCTTATTTGATTT+CGG | + | chr1_1:16989677-16989696 | Msa0011260:CDS | 25.0% |
| ! | GTTATGTCATTGAACTATAT+AGG | + | chr1_1:16989803-16989822 | Msa0011260:three_prime_UTR | 25.0% |
| ! | TTGTATCTTGTAGTATGATA+TGG | + | chr1_1:16989833-16989852 | Msa0011260:three_prime_UTR | 25.0% |
| ! | CAATGGAAAATCGACAATTT+TGG | + | chr1_1:16986033-16986052 | Msa0011260:CDS | 30.0% |
| TCTGATTTCTTGTAAGAACA+TGG | - | chr1_1:16986060-16986079 | None:intergenic | 30.0% | |
| TCCAAATACCAAGTTTGAAA+GGG | - | chr1_1:16986083-16986102 | None:intergenic | 30.0% | |
| TTCCAAATACCAAGTTTGAA+AGG | - | chr1_1:16986084-16986103 | None:intergenic | 30.0% | |
| AAGAGATAACATACTAACCA+GGG | - | chr1_1:16986345-16986364 | None:intergenic | 30.0% | |
| TAAGAGATAACATACTAACC+AGG | - | chr1_1:16986346-16986365 | None:intergenic | 30.0% | |
| AGACACTCTTTAATCAATGT+GGG | - | chr1_1:16986486-16986505 | None:intergenic | 30.0% | |
| AAAGGAGTAAACCATCAAAT+TGG | + | chr1_1:16986517-16986536 | Msa0011260:intron | 30.0% | |
| !! | TAAACCATCAAATTGGTCTT+TGG | + | chr1_1:16986524-16986543 | Msa0011260:intron | 30.0% |
| !! | AAACCATCAAATTGGTCTTT+GGG | + | chr1_1:16986525-16986544 | Msa0011260:intron | 30.0% |
| ! | GGTTTTTGTAAAGATGAGTT+AGG | + | chr1_1:16986696-16986715 | Msa0011260:intron | 30.0% |
| AATCCTACTAGTAAAACTCA+AGG | - | chr1_1:16986755-16986774 | None:intergenic | 30.0% | |
| AATAAGAAGTTTAGGTGAGT+TGG | + | chr1_1:16986792-16986811 | Msa0011260:intron | 30.0% | |
| ATAAGAAGTTTAGGTGAGTT+GGG | + | chr1_1:16986793-16986812 | Msa0011260:intron | 30.0% | |
| TTAGTAGGATTATTAGCAGT+AGG | + | chr1_1:16987075-16987094 | Msa0011260:intron | 30.0% | |
| TAGTAGGATTATTAGCAGTA+GGG | + | chr1_1:16987076-16987095 | Msa0011260:intron | 30.0% | |
| TAGTAGGATTATTAGCAGTA+GGG | + | chr1_1:16987076-16987095 | Msa0011260:intron | 30.0% | |
| ! | GACTCACGATTTTCAATTTA+TGG | + | chr1_1:16987468-16987487 | Msa0011260:intron | 30.0% |
| AAAGGGAAAGACAATAAAAC+AGG | - | chr1_1:16987556-16987575 | None:intergenic | 30.0% | |
| AACATTATCCCTTTCAAACA+TGG | - | chr1_1:16987636-16987655 | None:intergenic | 30.0% | |
| TGTTTGAAAGGGATAATGTT+TGG | + | chr1_1:16987636-16987655 | Msa0011260:intron | 30.0% | |
| GTTTGAAAGGGATAATGTTT+GGG | + | chr1_1:16987637-16987656 | Msa0011260:intron | 30.0% | |
| TTTGAAAGGGATAATGTTTG+GGG | + | chr1_1:16987638-16987657 | Msa0011260:intron | 30.0% | |
| TAAGGATTAAAGAACCAATG+GGG | - | chr1_1:16987753-16987772 | None:intergenic | 30.0% | |
| GTAAGGATTAAAGAACCAAT+GGG | - | chr1_1:16987754-16987773 | None:intergenic | 30.0% | |
| AGTAAGGATTAAAGAACCAA+TGG | - | chr1_1:16987755-16987774 | None:intergenic | 30.0% | |
| TAATCCTTACTACGATACTA+AGG | + | chr1_1:16987764-16987783 | Msa0011260:intron | 30.0% | |
| ATTTCCTTAGTATCGTAGTA+AGG | - | chr1_1:16987771-16987790 | None:intergenic | 30.0% | |
| GATACTAAGGAAATACTCAA+GGG | + | chr1_1:16987777-16987796 | Msa0011260:intron | 30.0% | |
| CGTAAAATACACTAAATGGT+GGG | - | chr1_1:16988114-16988133 | None:intergenic | 30.0% | |
| GTATAAAAAACAGGGTAAGA+CGG | - | chr1_1:16988137-16988156 | None:intergenic | 30.0% | |
| !!! | TACCCTGTTTTTTATACAAG+AGG | + | chr1_1:16988140-16988159 | Msa0011260:intron | 30.0% |
| AGCCTCTTGTATAAAAAACA+GGG | - | chr1_1:16988145-16988164 | None:intergenic | 30.0% | |
| TCTTGTAATACATTAAGTCC+TGG | - | chr1_1:16988172-16988191 | None:intergenic | 30.0% | |
| GTATTACAAGAAAATGCTTC+TGG | + | chr1_1:16988181-16988200 | Msa0011260:intron | 30.0% | |
| TAATGCTACAGTTCATGAAA+GGG | + | chr1_1:16988805-16988824 | Msa0011260:intron | 30.0% | |
| ACAATTTAACACTAGTTCAG+AGG | - | chr1_1:16989142-16989161 | None:intergenic | 30.0% | |
| !! | TTCAAGAAGTGCTTACAATT+TGG | + | chr1_1:16989774-16989793 | Msa0011260:CDS | 30.0% |
| AGTGCTTACAATTTGGAAAT+AGG | + | chr1_1:16989781-16989800 | Msa0011260:CDS | 30.0% | |
| CATTTGACATCTTAACAGAA+AGG | - | chr1_1:16989945-16989964 | None:intergenic | 30.0% | |
| ! | GATTTTCCATTGAGCTAATC+GGG | - | chr1_1:16986025-16986044 | None:intergenic | 35.0% |
| ! | CGATTTTCCATTGAGCTAAT+CGG | - | chr1_1:16986026-16986045 | None:intergenic | 35.0% |
| AAATCAGACCCTTTCAAACT+TGG | + | chr1_1:16986072-16986091 | Msa0011260:CDS | 35.0% | |
| ACCCTTTCAAACTTGGTATT+TGG | + | chr1_1:16986079-16986098 | Msa0011260:CDS | 35.0% | |
| ! | TCAAACTTGGTATTTGGAAC+TGG | + | chr1_1:16986085-16986104 | Msa0011260:CDS | 35.0% |
| ATTTGTCGATAGAGAGAAAC+AGG | + | chr1_1:16986191-16986210 | Msa0011260:CDS | 35.0% | |
| AGAAGAAGAAGAAGCAGTAT+TGG | - | chr1_1:16986299-16986318 | None:intergenic | 35.0% | |
| AGGGGAAATGTAAAATTTGC+GGG | - | chr1_1:16986326-16986345 | None:intergenic | 35.0% | |
| CAGGGGAAATGTAAAATTTG+CGG | - | chr1_1:16986327-16986346 | None:intergenic | 35.0% | |
| AGAGATAACATACTAACCAG+GGG | - | chr1_1:16986344-16986363 | None:intergenic | 35.0% | |
| ACTATAATATCAGCTCGTAC+TGG | + | chr1_1:16986449-16986468 | Msa0011260:intron | 35.0% | |
| TCTTTAATCAATGTGGGACT+TGG | - | chr1_1:16986480-16986499 | None:intergenic | 35.0% | |
| GAGACACTCTTTAATCAATG+TGG | - | chr1_1:16986487-16986506 | None:intergenic | 35.0% | |
| TGAGAATGACTTACAAAGAC+AGG | + | chr1_1:16986615-16986634 | Msa0011260:intron | 35.0% | |
| GAGAATGACTTACAAAGACA+GGG | + | chr1_1:16986616-16986635 | Msa0011260:intron | 35.0% | |
| AGAATGACTTACAAAGACAG+GGG | + | chr1_1:16986617-16986636 | Msa0011260:intron | 35.0% | |
| AACCGAGTAAACCACAAAAT+TGG | - | chr1_1:16986643-16986662 | None:intergenic | 35.0% | |
| ATCTTTCACCTTACAAAAGC+CGG | + | chr1_1:16986675-16986694 | Msa0011260:intron | 35.0% | |
| !! | TACAAAAACCGGCTTTTGTA+AGG | - | chr1_1:16986686-16986705 | None:intergenic | 35.0% |
| ! | TCTCCTTGAGTTTTACTAGT+AGG | + | chr1_1:16986749-16986768 | Msa0011260:intron | 35.0% |
| !! | CTAATAAAGGTTGGCTTAGT+TGG | - | chr1_1:16987052-16987071 | None:intergenic | 35.0% |
| TGGAATGCAAACAAGAACTA+AGG | + | chr1_1:16987100-16987119 | Msa0011260:intron | 35.0% | |
| TACTAGTAGCCAATAAAGGT+TGG | - | chr1_1:16987223-16987242 | None:intergenic | 35.0% | |
| ! | AACCTTTATTGGCTACTAGT+AGG | + | chr1_1:16987222-16987241 | Msa0011260:intron | 35.0% |
| ATCCTACTAGTAGCCAATAA+AGG | - | chr1_1:16987227-16987246 | None:intergenic | 35.0% | |
| CTAGTAGGATTATTAGCAGT+AGG | + | chr1_1:16987237-16987256 | Msa0011260:intron | 35.0% | |
| AGGAATCCATATCAATCAAC+GGG | - | chr1_1:16987295-16987314 | None:intergenic | 35.0% | |
| GAGGAATCCATATCAATCAA+CGG | - | chr1_1:16987296-16987315 | None:intergenic | 35.0% | |
| CTCTAAACTATCAATAGTGG+AGG | - | chr1_1:16987315-16987334 | None:intergenic | 35.0% | |
| AAGTCTCAGTATCAAGCAAA+GGG | - | chr1_1:16987573-16987592 | None:intergenic | 35.0% | |
| AAAGTCTCAGTATCAAGCAA+AGG | - | chr1_1:16987574-16987593 | None:intergenic | 35.0% | |
| TTGAAAGGGATAATGTTTGG+GGG | + | chr1_1:16987639-16987658 | Msa0011260:intron | 35.0% | |
| CGATACTAAGGAAATACTCA+AGG | + | chr1_1:16987776-16987795 | Msa0011260:intron | 35.0% | |
| AGTAAACAGTAGACAGTAAG+AGG | - | chr1_1:16987838-16987857 | None:intergenic | 35.0% | |
| TCATACCTCTTAAACTTCTG+CGG | + | chr1_1:16987873-16987892 | Msa0011260:intron | 35.0% | |
| CATAATGTCCGTAATTTACC+AGG | - | chr1_1:16987990-16988009 | None:intergenic | 35.0% | |
| GCGTAAAATACACTAAATGG+TGG | - | chr1_1:16988115-16988134 | None:intergenic | 35.0% | |
| ACGGCGTAAAATACACTAAA+TGG | - | chr1_1:16988118-16988137 | None:intergenic | 35.0% | |
| CAGCCTCTTGTATAAAAAAC+AGG | - | chr1_1:16988146-16988165 | None:intergenic | 35.0% | |
| CAAGGGATACAATAATAAGC+AGG | - | chr1_1:16988257-16988276 | None:intergenic | 35.0% | |
| TTCCTGATACGAAACTTAAG+TGG | - | chr1_1:16988324-16988343 | None:intergenic | 35.0% | |
| !! | ACTTTGAGATTATTAGCTCG+TGG | - | chr1_1:16988445-16988464 | None:intergenic | 35.0% |
| CAGATCACTAGATCTACAAT+TGG | - | chr1_1:16988583-16988602 | None:intergenic | 35.0% | |
| TTCACCATACAATCTTGAAC+TGG | - | chr1_1:16988753-16988772 | None:intergenic | 35.0% | |
| TCATGAACTGTAGCATTACA+GGG | - | chr1_1:16988803-16988822 | None:intergenic | 35.0% | |
| TTCATGAACTGTAGCATTAC+AGG | - | chr1_1:16988804-16988823 | None:intergenic | 35.0% | |
| GTAATGCTACAGTTCATGAA+AGG | + | chr1_1:16988804-16988823 | Msa0011260:intron | 35.0% | |
| AATTAGAGACTCACATTCAG+AGG | - | chr1_1:16988926-16988945 | None:intergenic | 35.0% | |
| TCCATACATGTATCTCAGAA+GGG | - | chr1_1:16989471-16989490 | None:intergenic | 35.0% | |
| TTCCATACATGTATCTCAGA+AGG | - | chr1_1:16989472-16989491 | None:intergenic | 35.0% | |
| CAATAAAACCCGAAGATTTC+TGG | + | chr1_1:16989492-16989511 | Msa0011260:CDS | 35.0% | |
| CCTACTTGAAGATCTTAACT+CGG | + | chr1_1:16989589-16989608 | Msa0011260:CDS | 35.0% | |
| CTACTTGAAGATCTTAACTC+GGG | + | chr1_1:16989590-16989609 | Msa0011260:CDS | 35.0% | |
| ! | TTTTCAATAAGCTGCCAAGC+TGG | - | chr1_1:16985830-16985849 | None:intergenic | 40.0% |
| CCAGACAGATACATGTTTGT+TGG | - | chr1_1:16985881-16985900 | None:intergenic | 40.0% | |
| CCAACAAACATGTATCTGTC+TGG | + | chr1_1:16985878-16985897 | Msa0011260:five_prime_UTR | 40.0% | |
| ACAAAACATGGGAGATTCGA+AGG | + | chr1_1:16985987-16986006 | Msa0011260:exon | 40.0% | |
| ! | CAATTTCCCGATTAGCTCAA+TGG | + | chr1_1:16986016-16986035 | Msa0011260:CDS | 40.0% |
| AGAATGAAACGAGCAATAGG+AGG | - | chr1_1:16986268-16986287 | None:intergenic | 40.0% | |
| CGAAGAATGAAACGAGCAAT+AGG | - | chr1_1:16986271-16986290 | None:intergenic | 40.0% | |
| GGAAATGTAAAATTTGCGGG+AGG | - | chr1_1:16986323-16986342 | None:intergenic | 40.0% | |
| ! | CGCAAATTTTACATTTCCCC+TGG | + | chr1_1:16986325-16986344 | Msa0011260:CDS | 40.0% |
| ! | GGCCAATTTTGTGGTTTACT+CGG | + | chr1_1:16986638-16986657 | Msa0011260:intron | 40.0% |
| CGCATAAGAATCTCTTTGGT+GGG | - | chr1_1:16986855-16986874 | None:intergenic | 40.0% | |
| CCACCAAAGAGATTCTTATG+CGG | + | chr1_1:16986853-16986872 | Msa0011260:intron | 40.0% | |
| CACCAAAGAGATTCTTATGC+GGG | + | chr1_1:16986854-16986873 | Msa0011260:intron | 40.0% | |
| AACTCCTTACCAACTGAGTT+GGG | + | chr1_1:16986917-16986936 | Msa0011260:intron | 40.0% | |
| AACGTGAGAATCTCTTTGGT+GGG | - | chr1_1:16986990-16987009 | None:intergenic | 40.0% | |
| TGTCAACGTGAGAATCTCTT+TGG | - | chr1_1:16986994-16987013 | None:intergenic | 40.0% | |
| AGGATTATTAGCAGTAGGGT+TGG | + | chr1_1:16987080-16987099 | Msa0011260:intron | 40.0% | |
| TTGCGGGATATGAATCAACA+GGG | - | chr1_1:16987132-16987151 | None:intergenic | 40.0% | |
| !! | TGTTGATTCATATCCCGCAA+GGG | + | chr1_1:16987132-16987151 | Msa0011260:intron | 40.0% |
| AGGATTATTAGCAGTAGGGT+TGG | + | chr1_1:16987080-16987099 | Msa0011260:intron | 40.0% | |
| TGGACTGCAAACAAGAACTA+AGG | + | chr1_1:16987262-16987281 | Msa0011260:intron | 40.0% | |
| ! | AATGTCCCCGTTGATTGATA+TGG | + | chr1_1:16987286-16987305 | Msa0011260:intron | 40.0% |
| GGAATCCATATCAATCAACG+GGG | - | chr1_1:16987294-16987313 | None:intergenic | 40.0% | |
| ATCGAGCATAAGAGGAAATG+AGG | - | chr1_1:16987613-16987632 | None:intergenic | 40.0% | |
| AAACATGGATCGAGCATAAG+AGG | - | chr1_1:16987621-16987640 | None:intergenic | 40.0% | |
| ATGCTCGATCCATGTTTGAA+AGG | + | chr1_1:16987624-16987643 | Msa0011260:intron | 40.0% | |
| TGCTCGATCCATGTTTGAAA+GGG | + | chr1_1:16987625-16987644 | Msa0011260:intron | 40.0% | |
| TTACTCTCTACTCACTTCAG+AGG | - | chr1_1:16987673-16987692 | None:intergenic | 40.0% | |
| !! | TCCAGAAGAGGCTGATTTTT+GGG | + | chr1_1:16987802-16987821 | Msa0011260:intron | 40.0% |
| !! | GGGAAAAGAGAGGTATTGAA+TGG | + | chr1_1:16987897-16987916 | Msa0011260:intron | 40.0% |
| ! | ACAATCTAAATGATGGAGCC+TGG | + | chr1_1:16987969-16987988 | Msa0011260:intron | 40.0% |
| TGATGGAGCCTGGTAAATTA+CGG | + | chr1_1:16987979-16987998 | Msa0011260:intron | 40.0% | |
| ! | TTATACAAGAGGCTGTTTCC+AGG | + | chr1_1:16988151-16988170 | Msa0011260:intron | 40.0% |
| CAAGAAAATGCTTCTGGATC+TGG | + | chr1_1:16988187-16988206 | Msa0011260:intron | 40.0% | |
| CACCACTTAAGTTTCGTATC+AGG | + | chr1_1:16988319-16988338 | Msa0011260:intron | 40.0% | |
| GTTTCTGCGGTAAACTCATA+TGG | + | chr1_1:16988517-16988536 | Msa0011260:intron | 40.0% | |
| GTAGATCTAGTGATCTGTCT+TGG | + | chr1_1:16988586-16988605 | Msa0011260:intron | 40.0% | |
| TGTGCCAGTTCAAGATTGTA+TGG | + | chr1_1:16988746-16988765 | Msa0011260:intron | 40.0% | |
| GTATGGTGAAATGCTGATAG+AGG | + | chr1_1:16988763-16988782 | Msa0011260:intron | 40.0% | |
| CATCAATAATCAAGCGACCA+AGG | - | chr1_1:16988877-16988896 | None:intergenic | 40.0% | |
| !!! | TTTTTTTTGGCCTGAGAGTC+AGG | + | chr1_1:16989181-16989200 | Msa0011260:intron | 40.0% |
| !!! | TTTTTTTGGCCTGAGAGTCA+GGG | + | chr1_1:16989182-16989201 | Msa0011260:intron | 40.0% |
| ! | TTTTCCATCAGATGGCCATA+TGG | - | chr1_1:16989222-16989241 | None:intergenic | 40.0% |
| ! | GAATGCAGTTTTCCATCAGA+TGG | - | chr1_1:16989230-16989249 | None:intergenic | 40.0% |
| CATCTGCGGTTATAATAGTG+AGG | - | chr1_1:16989316-16989335 | None:intergenic | 40.0% | |
| CTCACTATTATAACCGCAGA+TGG | + | chr1_1:16989314-16989333 | Msa0011260:CDS | 40.0% | |
| CTTGTGACATGTCTTCTATG+TGG | - | chr1_1:16989436-16989455 | None:intergenic | 40.0% | |
| GCAGCTAATAAGTACGACAT+CGG | + | chr1_1:16989539-16989558 | Msa0011260:CDS | 40.0% | |
| CCGAGTTAAGATCTTCAAGT+AGG | - | chr1_1:16989592-16989611 | None:intergenic | 40.0% | |
| !!! | GTTTTTTCGTCATGCAGACA+GGG | + | chr1_1:16989733-16989752 | Msa0011260:CDS | 40.0% |
| !! | AGTGGCAAGTCGATTTTGTT+TGG | + | chr1_1:16989985-16990004 | Msa0011260:three_prime_UTR | 40.0% |
| ! | GTCTAGTGCGTTAGGTTGTT+GGG | + | chr1_1:16985900-16985919 | Msa0011260:five_prime_UTR | 45.0% |
| TTAGAAACACGCGAAGGTTC+AGG | - | chr1_1:16986238-16986257 | None:intergenic | 45.0% | |
| ! | TGAACCTTCGCGTGTTTCTA+AGG | + | chr1_1:16986237-16986256 | Msa0011260:CDS | 45.0% |
| TGTTCCTTAGAAACACGCGA+AGG | - | chr1_1:16986244-16986263 | None:intergenic | 45.0% | |
| GGTCCCAAAGACCAATTTGA+TGG | - | chr1_1:16986531-16986550 | None:intergenic | 45.0% | |
| ! | AAAGACAGGGGCCAATTTTG+TGG | + | chr1_1:16986629-16986648 | Msa0011260:intron | 45.0% |
| ! | AGTTTAGGTGAGTTGGGTTC+CGG | + | chr1_1:16986799-16986818 | Msa0011260:intron | 45.0% |
| ! | GAATCTCTTTGGTGGGTGAT+CGG | - | chr1_1:16986848-16986867 | None:intergenic | 45.0% |
| CCGCATAAGAATCTCTTTGG+TGG | - | chr1_1:16986856-16986875 | None:intergenic | 45.0% | |
| GTTGGATTCATATCCCGCAA+GGG | - | chr1_1:16986900-16986919 | None:intergenic | 45.0% | |
| AGTTGGATTCATATCCCGCA+AGG | - | chr1_1:16986901-16986920 | None:intergenic | 45.0% | |
| !! | CAACTCAGTTGGTAAGGAGT+TGG | - | chr1_1:16986918-16986937 | None:intergenic | 45.0% |
| CAACTCCTTACCAACTGAGT+TGG | + | chr1_1:16986916-16986935 | Msa0011260:intron | 45.0% | |
| TTGGGCTTCAAGGTTGACTA+GGG | + | chr1_1:16986935-16986954 | Msa0011260:intron | 45.0% | |
| TTCAAGGTTGACTAGGGTCA+AGG | + | chr1_1:16986941-16986960 | Msa0011260:intron | 45.0% | |
| CAACGTGAGAATCTCTTTGG+TGG | - | chr1_1:16986991-16987010 | None:intergenic | 45.0% | |
| ! | ACGCATATCCACAAAGGTGT+GGG | - | chr1_1:16987029-16987048 | None:intergenic | 45.0% |
| AGTTGGACGCATATCCACAA+AGG | - | chr1_1:16987035-16987054 | None:intergenic | 45.0% | |
| CTTGCGGGATATGAATCAAC+AGG | - | chr1_1:16987133-16987152 | None:intergenic | 45.0% | |
| !! | CTGTTGATTCATATCCCGCA+AGG | + | chr1_1:16987131-16987150 | Msa0011260:intron | 45.0% |
| AGTTGGACTCATATCCGCAA+GGG | - | chr1_1:16987186-16987205 | None:intergenic | 45.0% | |
| ! | AAAGGTTGGCTCAGTTGGTA+AGG | - | chr1_1:16987209-16987228 | None:intergenic | 45.0% |
| ! | CCAATAAAGGTTGGCTCAGT+TGG | - | chr1_1:16987214-16987233 | None:intergenic | 45.0% |
| CCAACTGAGCCAACCTTTAT+TGG | + | chr1_1:16987211-16987230 | Msa0011260:intron | 45.0% | |
| !! | GTCCAGAAGAGGCTGATTTT+TGG | + | chr1_1:16987801-16987820 | Msa0011260:intron | 45.0% |
| ACCCAAAAATCAGCCTCTTC+TGG | - | chr1_1:16987806-16987825 | None:intergenic | 45.0% | |
| !! | AGAAGAGGCTGATTTTTGGG+TGG | + | chr1_1:16987805-16987824 | Msa0011260:intron | 45.0% |
| !!! | GAAGAGGCTGATTTTTGGGT+GGG | + | chr1_1:16987806-16987825 | Msa0011260:intron | 45.0% |
| !!! | AAGAGGCTGATTTTTGGGTG+GGG | + | chr1_1:16987807-16987826 | Msa0011260:intron | 45.0% |
| TACCTCTTAAACTTCTGCGG+AGG | + | chr1_1:16987876-16987895 | Msa0011260:intron | 45.0% | |
| ACCTCTTAAACTTCTGCGGA+GGG | + | chr1_1:16987877-16987896 | Msa0011260:intron | 45.0% | |
| ATGACAGTGAATGCAGATGC+AGG | - | chr1_1:16988018-16988037 | None:intergenic | 45.0% | |
| AGGATTCGTCAGATGATGCA+AGG | - | chr1_1:16988237-16988256 | None:intergenic | 45.0% | |
| ATTATTGTATCCCTTGCCCC+AGG | + | chr1_1:16988261-16988280 | Msa0011260:intron | 45.0% | |
| GAACCTGTGATGACTTTGTC+TGG | + | chr1_1:16988834-16988853 | Msa0011260:CDS | 45.0% | |
| CCAAGGAATGTAGTATCCAC+AGG | - | chr1_1:16988860-16988879 | None:intergenic | 45.0% | |
| CCTGTGGATACTACATTCCT+TGG | + | chr1_1:16988857-16988876 | Msa0011260:CDS | 45.0% | |
| CATTCAGAGGATGGATCTTG+AGG | - | chr1_1:16988913-16988932 | None:intergenic | 45.0% | |
| AGAGACTCACATTCAGAGGA+TGG | - | chr1_1:16988922-16988941 | None:intergenic | 45.0% | |
| CTAGTTCAGAGGTTCTCTGA+GGG | - | chr1_1:16989131-16989150 | None:intergenic | 45.0% | |
| ACTAGTTCAGAGGTTCTCTG+AGG | - | chr1_1:16989132-16989151 | None:intergenic | 45.0% | |
| ATCAGATGGCCATATGGAAC+TGG | - | chr1_1:16989216-16989235 | None:intergenic | 45.0% | |
| AGTTCCATATGGCCATCTGA+TGG | + | chr1_1:16989215-16989234 | Msa0011260:CDS | 45.0% | |
| CTTTGTCAAGCATACGAGAG+AGG | - | chr1_1:16989280-16989299 | None:intergenic | 45.0% | |
| CATGTCACAAGAATCCTGCA+CGG | + | chr1_1:16989445-16989464 | Msa0011260:CDS | 45.0% | |
| !! | GCCCTTCTGAGATACATGTA+TGG | + | chr1_1:16989467-16989486 | Msa0011260:CDS | 45.0% |
| CTGTGCTTCCAGAAATCTTC+GGG | - | chr1_1:16989503-16989522 | None:intergenic | 45.0% | |
| CCTGTGCTTCCAGAAATCTT+CGG | - | chr1_1:16989504-16989523 | None:intergenic | 45.0% | |
| TGTTCTCGAGAGGCTTAATG+AGG | + | chr1_1:16989616-16989635 | Msa0011260:CDS | 45.0% | |
| CTTTCTTCAACTTGTGCAGC+TGG | - | chr1_1:16989652-16989671 | None:intergenic | 45.0% | |
| ! | CAGCTGCACAAGTTGAAGAA+AGG | + | chr1_1:16989650-16989669 | Msa0011260:CDS | 45.0% |
| !!! | CGTTTTTTCGTCATGCAGAC+AGG | + | chr1_1:16989732-16989751 | Msa0011260:CDS | 45.0% |
| TCTGTCTGGTCTAGTGCGTT+AGG | + | chr1_1:16985892-16985911 | Msa0011260:five_prime_UTR | 50.0% | |
| ! | GGTCTAGTGCGTTAGGTTGT+TGG | + | chr1_1:16985899-16985918 | Msa0011260:five_prime_UTR | 50.0% |
| ! | GTTTAGGTGAGTTGGGTTCC+GGG | + | chr1_1:16986800-16986819 | Msa0011260:intron | 50.0% |
| ! | TTTAGGTGAGTTGGGTTCCG+GGG | + | chr1_1:16986801-16986820 | Msa0011260:intron | 50.0% |
| CGCCCGCATAAGAATCTCTT+TGG | - | chr1_1:16986859-16986878 | None:intergenic | 50.0% | |
| ! | TTCATATCCCGCAAGGGCAT+GGG | - | chr1_1:16987138-16987157 | None:intergenic | 50.0% |
| ATTCATATCCCGCAAGGGCA+TGG | - | chr1_1:16987137-16987156 | None:intergenic | 50.0% | |
| ! | GAAGCCCAACTCAGTTGGTA+AGG | - | chr1_1:16986924-16986943 | None:intergenic | 50.0% |
| ! | ACCAACTGAGTTGGGCTTCA+AGG | + | chr1_1:16986925-16986944 | Msa0011260:intron | 50.0% |
| ACCTTGAAGCCCAACTCAGT+TGG | - | chr1_1:16986929-16986948 | None:intergenic | 50.0% | |
| GTTGGGCTTCAAGGTTGACT+AGG | + | chr1_1:16986934-16986953 | Msa0011260:intron | 50.0% | |
| GACGCATATCCACAAAGGTG+TGG | - | chr1_1:16987030-16987049 | None:intergenic | 50.0% | |
| ATTCATATCCCGCAAGGGCA+TGG | + | chr1_1:16987137-16987156 | Msa0011260:intron | 50.0% | |
| ! | TTCATATCCCGCAAGGGCAT+GGG | + | chr1_1:16987138-16987157 | Msa0011260:intron | 50.0% |
| ! | ACTCATATCCGCAAGGGCAT+GGG | - | chr1_1:16987180-16987199 | None:intergenic | 50.0% |
| GAGTTGGACTCATATCCGCA+AGG | - | chr1_1:16987187-16987206 | None:intergenic | 50.0% | |
| !! | TGGCTCAGTTGGTAAGGAGT+TGG | - | chr1_1:16987203-16987222 | None:intergenic | 50.0% |
| !! | TACTCAAGGGTGTCCAGAAG+AGG | + | chr1_1:16987790-16987809 | Msa0011260:intron | 50.0% |
| TCCCTCCGCAGAAGTTTAAG+AGG | - | chr1_1:16987881-16987900 | None:intergenic | 50.0% | |
| ! | TGCGAGAGCTTTAGTGCACT+GGG | - | chr1_1:16988069-16988088 | None:intergenic | 50.0% |
| ! | ATGCGAGAGCTTTAGTGCAC+TGG | - | chr1_1:16988070-16988089 | None:intergenic | 50.0% |
| ACTAAAGCTCTCGCATACGC+AGG | + | chr1_1:16988074-16988093 | Msa0011260:intron | 50.0% | |
| CTAAAGCTCTCGCATACGCA+GGG | + | chr1_1:16988075-16988094 | Msa0011260:intron | 50.0% | |
| TAAAGCTCTCGCATACGCAG+GGG | + | chr1_1:16988076-16988095 | Msa0011260:intron | 50.0% | |
| ATGGCTATCCCTTGATGCCT+GGG | - | chr1_1:16988281-16988300 | None:intergenic | 50.0% | |
| TATGGCTATCCCTTGATGCC+TGG | - | chr1_1:16988282-16988301 | None:intergenic | 50.0% | |
| AGGCCAGACAAAGTCATCAC+AGG | - | chr1_1:16988840-16988859 | None:intergenic | 50.0% | |
| TGATGACTTTGTCTGGCCTG+TGG | + | chr1_1:16988841-16988860 | Msa0011260:CDS | 50.0% | |
| GTGGAGAAGCCAGTTCCATA+TGG | + | chr1_1:16989204-16989223 | Msa0011260:CDS | 50.0% | |
| ! | CAAGCATACGAGAGAGGCAT+CGG | - | chr1_1:16989274-16989293 | None:intergenic | 50.0% |
| AACCGCAGATGGCACACTTA+AGG | + | chr1_1:16989325-16989344 | Msa0011260:CDS | 50.0% | |
| AGCCTTAAGTGTGCCATCTG+CGG | - | chr1_1:16989330-16989349 | None:intergenic | 50.0% | |
| CTGAAACACAGGAGAGGTTG+CGG | - | chr1_1:16989369-16989388 | None:intergenic | 50.0% | |
| TGATACGAGGCCTGAAACAC+AGG | - | chr1_1:16989380-16989399 | None:intergenic | 50.0% | |
| TTCACTGCTGCTGTGATACG+AGG | - | chr1_1:16989393-16989412 | None:intergenic | 50.0% | |
| ! | CCGAAGATTTCTGGAAGCAC+AGG | + | chr1_1:16989501-16989520 | Msa0011260:CDS | 50.0% |
| ! | AGATTTCTGGAAGCACAGGC+TGG | + | chr1_1:16989505-16989524 | Msa0011260:CDS | 50.0% |
| TGATCTCAAAGACGCATGCG+AGG | + | chr1_1:16989562-16989581 | Msa0011260:CDS | 50.0% | |
| ACTCGGGAAATGTTCTCGAG+AGG | + | chr1_1:16989606-16989625 | Msa0011260:CDS | 50.0% | |
| TCGAGAGGCTTAATGAGGCT+TGG | + | chr1_1:16989621-16989640 | Msa0011260:CDS | 50.0% | |
| GTGAACGGTGCATACCAGCT+TGG | + | chr1_1:16985813-16985832 | Msa0011260:five_prime_UTR | 55.0% | |
| ! | TTGGGTTCCGGGGTTGACTT+GGG | + | chr1_1:16986811-16986830 | Msa0011260:intron | 55.0% |
| GAGTTGTACCCATGCCCTTG+CGG | + | chr1_1:16986883-16986902 | Msa0011260:intron | 55.0% | |
| AGTTGTACCCATGCCCTTGC+GGG | + | chr1_1:16986884-16986903 | Msa0011260:intron | 55.0% | |
| AGGTTGACTAGGGTCAAGGC+AGG | + | chr1_1:16986945-16986964 | Msa0011260:intron | 55.0% | |
| GAGCTGTACCCACACCTTTG+TGG | + | chr1_1:16987018-16987037 | Msa0011260:intron | 55.0% | |
| AGTTGTACCCATGCCCTTGC+GGG | - | chr1_1:16986884-16986903 | None:intergenic | 55.0% | |
| GAGTTGTACCCATGCCCTTG+CGG | - | chr1_1:16986883-16986902 | None:intergenic | 55.0% | |
| GTGTTGTACCCATGCCCTTG+CGG | + | chr1_1:16987169-16987188 | Msa0011260:intron | 55.0% | |
| GACTCATATCCGCAAGGGCA+TGG | - | chr1_1:16987181-16987200 | None:intergenic | 55.0% | |
| CTTCTGCGGAGGGAAAAGAG+AGG | + | chr1_1:16987887-16987906 | Msa0011260:intron | 55.0% | |
| TGGCTATCCCTTGATGCCTG+GGG | - | chr1_1:16988280-16988299 | None:intergenic | 55.0% | |
| ! | TTTTGGCCTGAGAGTCAGGG+TGG | + | chr1_1:16989185-16989204 | Msa0011260:intron | 55.0% |
| CGCAACCTCTCCTGTGTTTC+AGG | + | chr1_1:16989367-16989386 | Msa0011260:CDS | 55.0% | |
| !! | AAGCACAGGCTGGCTTTGCT+TGG | + | chr1_1:16989515-16989534 | Msa0011260:CDS | 55.0% |
| GTTGGGTTCCGGGGTTGACT+TGG | + | chr1_1:16986810-16986829 | Msa0011260:intron | 60.0% | |
| !! | TGGGTTCCGGGGTTGACTTG+GGG | + | chr1_1:16986812-16986831 | Msa0011260:intron | 60.0% |
| CCTTGACCCCAAGTCAACCC+CGG | - | chr1_1:16986821-16986840 | None:intergenic | 60.0% | |
| ATCCCTTGCCCCAGGCATCA+AGG | + | chr1_1:16988269-16988288 | Msa0011260:intron | 60.0% | |
| TCCCTTGCCCCAGGCATCAA+GGG | + | chr1_1:16988270-16988289 | Msa0011260:intron | 60.0% | |
| TCCCTTGATGCCTGGGGCAA+GGG | - | chr1_1:16988274-16988293 | None:intergenic | 60.0% | |
| ATCCCTTGATGCCTGGGGCA+AGG | - | chr1_1:16988275-16988294 | None:intergenic | 60.0% | |
| GCTTCTCCACCCTGACTCTC+AGG | - | chr1_1:16989194-16989213 | None:intergenic | 60.0% | |
| CGAGGCCTGAAACACAGGAG+AGG | - | chr1_1:16989375-16989394 | None:intergenic | 60.0% | |
| GTATCTCAGAAGGGCCGTGC+AGG | - | chr1_1:16989462-16989481 | None:intergenic | 60.0% | |
| !! | CCGGGGTTGACTTGGGGTCA+AGG | + | chr1_1:16986818-16986837 | Msa0011260:intron | 65.0% |
| CTCTCGCATACGCAGGGGCT+GGG | + | chr1_1:16988081-16988100 | Msa0011260:intron | 65.0% | |
| GCATACGCAGGGGCTGGGAA+GGG | + | chr1_1:16988086-16988105 | Msa0011260:intron | 65.0% | |
| CATACGCAGGGGCTGGGAAG+GGG | + | chr1_1:16988087-16988106 | Msa0011260:intron | 65.0% | |
| GCTCTCGCATACGCAGGGGC+TGG | + | chr1_1:16988080-16988099 | Msa0011260:intron | 70.0% | |
| CGCATACGCAGGGGCTGGGA+AGG | + | chr1_1:16988085-16988104 | Msa0011260:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 16985808 | 16990015 | 16985808 | ID=Msa0011260;Name=Msa0011260 |
| chr1_1 | mRNA | 16985808 | 16990015 | 16985808 | ID=Msa0011260-mRNA-1;Parent=Msa0011260;Name=Msa0011260-mRNA-1;_AED=0.11;_eAED=0.11;_QI=186|1|1|1|1|1|4|213|328 |
| chr1_1 | exon | 16985808 | 16986106 | 16985808 | ID=Msa0011260-mRNA-1:exon:6207;Parent=Msa0011260-mRNA-1 |
| chr1_1 | exon | 16986189 | 16986346 | 16986189 | ID=Msa0011260-mRNA-1:exon:6208;Parent=Msa0011260-mRNA-1 |
| chr1_1 | exon | 16988816 | 16988931 | 16988816 | ID=Msa0011260-mRNA-1:exon:6209;Parent=Msa0011260-mRNA-1 |
| chr1_1 | exon | 16989203 | 16990015 | 16989203 | ID=Msa0011260-mRNA-1:exon:6210;Parent=Msa0011260-mRNA-1 |
| chr1_1 | five_prime_UTR | 16985808 | 16985993 | 16985808 | ID=Msa0011260-mRNA-1:five_prime_utr;Parent=Msa0011260-mRNA-1 |
| chr1_1 | CDS | 16985994 | 16986106 | 16985994 | ID=Msa0011260-mRNA-1:cds;Parent=Msa0011260-mRNA-1 |
| chr1_1 | CDS | 16986189 | 16986346 | 16986189 | ID=Msa0011260-mRNA-1:cds;Parent=Msa0011260-mRNA-1 |
| chr1_1 | CDS | 16988816 | 16988931 | 16988816 | ID=Msa0011260-mRNA-1:cds;Parent=Msa0011260-mRNA-1 |
| chr1_1 | CDS | 16989203 | 16989802 | 16989203 | ID=Msa0011260-mRNA-1:cds;Parent=Msa0011260-mRNA-1 |
| chr1_1 | three_prime_UTR | 16989803 | 16990015 | 16989803 | ID=Msa0011260-mRNA-1:three_prime_utr;Parent=Msa0011260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
