Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0012110 | sp|Q9SCK6|NAC62_ARATH | 30.729 | 192 | 91 | 10 | 1 | 158 | 10 | 193 | 2.18e-13 | 72.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0012110 | TF | NAC |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0012110 | MtrunA17_Chr6g0481091 | 30.114 | 176 | 74 | 8 | 4 | 146 | 6 | 165 | 6.60e-13 | 65.9 |
| Msa0012110 | MtrunA17_Chr5g0405211 | 32.051 | 156 | 69 | 6 | 2 | 126 | 6 | 155 | 9.63e-13 | 66.2 |
| Msa0012110 | MtrunA17_Chr8g0384351 | 31.250 | 144 | 63 | 7 | 4 | 127 | 10 | 137 | 6.01e-12 | 62.4 |
| Msa0012110 | MtrunA17_Chr3g0128151 | 29.545 | 176 | 89 | 8 | 4 | 150 | 22 | 191 | 8.14e-12 | 63.9 |
| Msa0012110 | MtrunA17_Chr4g0017921 | 31.214 | 173 | 83 | 8 | 4 | 146 | 8 | 174 | 1.45e-11 | 62.8 |
| Msa0012110 | MtrunA17_Chr1g0197361 | 30.464 | 151 | 73 | 7 | 6 | 127 | 10 | 157 | 1.75e-11 | 63.2 |
| Msa0012110 | MtrunA17_Chr3g0092671 | 29.139 | 151 | 75 | 6 | 6 | 127 | 7 | 154 | 1.89e-11 | 62.8 |
| Msa0012110 | MtrunA17_Chr3g0109821 | 30.719 | 153 | 73 | 8 | 4 | 126 | 6 | 155 | 1.99e-11 | 63.2 |
| Msa0012110 | MtrunA17_Chr3g0130101 | 29.379 | 177 | 92 | 6 | 3 | 149 | 6 | 179 | 2.08e-11 | 62.4 |
| Msa0012110 | MtrunA17_Chr7g0214071 | 30.872 | 149 | 72 | 6 | 4 | 126 | 15 | 158 | 2.89e-11 | 61.2 |
| Msa0012110 | MtrunA17_Chr4g0050701 | 28.387 | 155 | 73 | 7 | 4 | 127 | 11 | 158 | 3.18e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0012110 | AT3G49530.2 | 30.729 | 192 | 91 | 10 | 1 | 158 | 10 | 193 | 2.12e-14 | 71.6 |
| Msa0012110 | AT3G49530.1 | 30.729 | 192 | 91 | 10 | 1 | 158 | 10 | 193 | 2.21e-14 | 72.0 |
| Msa0012110 | AT2G27300.1 | 33.562 | 146 | 73 | 7 | 1 | 125 | 11 | 153 | 3.70e-14 | 70.9 |
| Msa0012110 | AT5G04410.1 | 29.605 | 152 | 75 | 6 | 4 | 126 | 9 | 157 | 3.21e-13 | 68.6 |
| Msa0012110 | AT5G24590.2 | 34.375 | 160 | 64 | 8 | 1 | 126 | 10 | 162 | 5.84e-13 | 67.8 |
| Msa0012110 | AT1G33060.1 | 31.013 | 158 | 77 | 7 | 1 | 129 | 21 | 175 | 3.21e-12 | 65.9 |
| Msa0012110 | AT1G33060.2 | 31.013 | 158 | 77 | 7 | 1 | 129 | 21 | 175 | 3.47e-12 | 65.5 |
| Msa0012110 | AT2G24430.2 | 31.579 | 152 | 71 | 6 | 4 | 126 | 16 | 163 | 3.94e-12 | 64.7 |
| Msa0012110 | AT2G24430.1 | 31.579 | 152 | 71 | 6 | 4 | 126 | 16 | 163 | 3.94e-12 | 64.7 |
| Msa0012110 | AT3G10490.1 | 31.977 | 172 | 74 | 8 | 4 | 138 | 27 | 192 | 5.34e-12 | 63.5 |
| Msa0012110 | AT3G10500.1 | 30.323 | 155 | 76 | 7 | 1 | 126 | 6 | 157 | 7.10e-12 | 64.7 |
| Msa0012110 | AT3G17730.1 | 29.487 | 156 | 70 | 7 | 4 | 126 | 6 | 154 | 1.08e-11 | 62.8 |
| Msa0012110 | AT2G33480.2 | 33.793 | 145 | 71 | 6 | 4 | 126 | 15 | 156 | 1.64e-11 | 62.8 |
| Msa0012110 | AT5G22290.1 | 32.394 | 142 | 71 | 7 | 6 | 125 | 23 | 161 | 2.43e-11 | 62.8 |
| Msa0012110 | AT2G33480.1 | 33.333 | 147 | 71 | 6 | 4 | 126 | 15 | 158 | 2.74e-11 | 62.0 |
| Msa0012110 | AT3G44290.2 | 29.787 | 141 | 75 | 6 | 6 | 125 | 16 | 153 | 2.81e-11 | 61.6 |
| Msa0012110 | AT3G10490.2 | 31.977 | 172 | 74 | 8 | 4 | 138 | 27 | 192 | 3.21e-11 | 62.8 |
| Msa0012110 | AT3G10480.1 | 30.811 | 185 | 82 | 9 | 4 | 151 | 27 | 202 | 4.56e-11 | 62.0 |
| Msa0012110 | AT3G44290.1 | 29.787 | 141 | 75 | 6 | 6 | 125 | 16 | 153 | 8.08e-11 | 61.2 |
Find 58 sgRNAs with CRISPR-Local
Find 224 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAATTTAAGCTTGCAATTA+TGG | 0.141545 | 1_1:-18200903 | Msa0012110:CDS |
| GGCACTGCAGGACTGGATTT+TGG | 0.202792 | 1_1:-18202365 | Msa0012110:CDS |
| TCCCTCTTTATGTTCTATCT+TGG | 0.300819 | 1_1:-18202279 | Msa0012110:CDS |
| CTGGTAGTAGTGATGGTGGT+GGG | 0.303392 | 1_1:-18201922 | Msa0012110:CDS |
| TGGAGATGACAATGTGGTTT+TGG | 0.323180 | 1_1:-18202310 | Msa0012110:CDS |
| ATGGATCTGGGTGCAGAGTT+TGG | 0.323843 | 1_1:-18202028 | Msa0012110:CDS |
| TCCATGGTTCTGACCTCATT+AGG | 0.324328 | 1_1:-18202503 | Msa0012110:CDS |
| GCTATGCTTCCACCTGGTGC+TGG | 0.351315 | 1_1:-18202597 | Msa0012110:CDS |
| CCATGGTTCTGACCTCATTA+GGG | 0.355765 | 1_1:-18202502 | Msa0012110:CDS |
| TTGCCCTCCAGCAATGGATC+TGG | 0.371581 | 1_1:-18202041 | Msa0012110:CDS |
| GGCATTACTCGAGACATTAA+TGG | 0.390991 | 1_1:-18202333 | Msa0012110:CDS |
| TGATGTCACTCGAAAACTTA+AGG | 0.396017 | 1_1:-18201960 | Msa0012110:CDS |
| GAGAGACGGCACTGCAGGAC+TGG | 0.427179 | 1_1:-18202372 | Msa0012110:CDS |
| CCCACTGACGAGATACTTGT+TGG | 0.432459 | 1_1:-18202567 | Msa0012110:CDS |
| AAAACACGGCACACAACAAA+AGG | 0.436311 | 1_1:+18202067 | None:intergenic |
| GCTGGTAGTAGTGATGGTGG+TGG | 0.451886 | 1_1:-18201923 | Msa0012110:CDS |
| GATGTCACTCGAAAACTTAA+GGG | 0.453296 | 1_1:-18201959 | Msa0012110:CDS |
| CTATGCTTCCACCTGGTGCT+GGG | 0.456622 | 1_1:-18202596 | Msa0012110:CDS |
| TCTGCACCCAGATCCATTGC+TGG | 0.460133 | 1_1:+18202034 | None:intergenic |
| GCTGGGGCTGGTAGTAGTGA+TGG | 0.467052 | 1_1:-18201929 | Msa0012110:CDS |
| TACTTGTTGGCTACTACCTT+AGG | 0.477557 | 1_1:-18202554 | Msa0012110:CDS |
| GGTGGTGGGGCTGCTGAGCA+AGG | 0.481889 | 1_1:-18201908 | Msa0012110:CDS |
| TACTGCTTCACTGCCAAAGT+TGG | 0.486292 | 1_1:-18202399 | Msa0012110:CDS |
| CCGTCTCTCACTGCCAACTT+TGG | 0.487719 | 1_1:+18202386 | None:intergenic |
| TTCCAAGATAGAACATAAAG+AGG | 0.498797 | 1_1:+18202277 | None:intergenic |
| AGGACGCTGTCAGAACAAAC+TGG | 0.499874 | 1_1:-18202245 | Msa0012110:CDS |
| TGGTAGTAGTGATGGTGGTG+GGG | 0.505536 | 1_1:-18201921 | Msa0012110:CDS |
| TGCCCTCCAGCAATGGATCT+GGG | 0.507906 | 1_1:-18202040 | Msa0012110:CDS |
| GCAGTGAGAGACGGCACTGC+AGG | 0.521491 | 1_1:-18202377 | Msa0012110:CDS |
| TGCATTGGCTGACAAGCCTC+AGG | 0.522270 | 1_1:-18202208 | Msa0012110:intron |
| GCCAACAAGTATCTCGTCAG+TGG | 0.527034 | 1_1:+18202566 | None:intergenic |
| ATTGCAAGCTTAAATTGCTC+CGG | 0.527174 | 1_1:+18200908 | None:intergenic |
| ACCTTCTTCAACATCAGATA+AGG | 0.528743 | 1_1:+18202003 | None:intergenic |
| GTGGGGAGAAACCCAGCACC+AGG | 0.542796 | 1_1:+18202585 | None:intergenic |
| GAACAGGTTCAGAATTTCCA+TGG | 0.547755 | 1_1:-18202519 | Msa0012110:CDS |
| CCACGTGGAAGCTATAACGC+CGG | 0.563222 | 1_1:-18200927 | Msa0012110:CDS |
| ACAGGTTCAGCTCCCTAATG+AGG | 0.565571 | 1_1:+18202490 | None:intergenic |
| GCAATGGCTATGCTTCCACC+TGG | 0.574224 | 1_1:-18202603 | Msa0012110:CDS |
| CCAACAAGTATCTCGTCAGT+GGG | 0.578284 | 1_1:+18202567 | None:intergenic |
| CTATCTTGGAAATTCTGTGA+AGG | 0.589080 | 1_1:-18202265 | Msa0012110:CDS |
| GCACCCAGATCCATTGCTGG+AGG | 0.602073 | 1_1:+18202037 | None:intergenic |
| GGGGCTGGTAGTAGTGATGG+TGG | 0.602818 | 1_1:-18201926 | Msa0012110:CDS |
| CCCTAATGAGGTCAGAACCA+TGG | 0.604440 | 1_1:+18202502 | None:intergenic |
| ATGTCACTCGAAAACTTAAG+GGG | 0.610861 | 1_1:-18201958 | Msa0012110:CDS |
| CACCCAGATCCATTGCTGGA+GGG | 0.613242 | 1_1:+18202038 | None:intergenic |
| ATTTAAGCTTGCAATTATGG+AGG | 0.617003 | 1_1:-18200900 | Msa0012110:CDS |
| GCCTTATCTGATGTTGAAGA+AGG | 0.619001 | 1_1:-18202004 | Msa0012110:CDS |
| CCAAAGTTGGCAGTGAGAGA+CGG | 0.623168 | 1_1:-18202386 | Msa0012110:CDS |
| TCCAAGATAGAACATAAAGA+GGG | 0.626576 | 1_1:+18202278 | None:intergenic |
| GTTGAAGAAGGTGATGCTGC+TGG | 0.630740 | 1_1:-18201992 | Msa0012110:CDS |
| GGGAGAAACCCAGCACCAGG+TGG | 0.671634 | 1_1:+18202588 | None:intergenic |
| GATTATGTACGAGTATGCAT+TGG | 0.682043 | 1_1:-18202223 | Msa0012110:CDS |
| ATTACTCGAGACATTAATGG+TGG | 0.700868 | 1_1:-18202330 | Msa0012110:CDS |
| TGTCACTCGAAAACTTAAGG+GGG | 0.705876 | 1_1:-18201957 | Msa0012110:CDS |
| CCGGCGTTATAGCTTCCACG+TGG | 0.714144 | 1_1:+18200927 | None:intergenic |
| TGACAATGTTGTCTTCCACG+TGG | 0.721449 | 1_1:-18200942 | Msa0012110:CDS |
| CAACAAGTATCTCGTCAGTG+GGG | 0.741470 | 1_1:+18202568 | None:intergenic |
| TAATGGTGGAGATGACAATG+TGG | 0.781339 | 1_1:-18202316 | Msa0012110:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATATTATTATTGTGC+AGG | - | chr1_1:18201394-18201413 | Msa0012110:intron | 15.0% |
| !! | GATAAAATTTATCAAAACTT+TGG | - | chr1_1:18201985-18202004 | Msa0012110:CDS | 15.0% |
| !!! | ATTAAACCATTTTTTAAACT+CGG | + | chr1_1:18202085-18202104 | None:intergenic | 15.0% |
| !! | CAAATTTAAAGAAGAAAAAA+AGG | + | chr1_1:18202361-18202380 | None:intergenic | 15.0% |
| !!! | TGTTTGTTTTAATGTTTATT+AGG | - | chr1_1:18202502-18202521 | Msa0012110:CDS | 15.0% |
| !!! | TTTTTATATTATTATTGTGC+AGG | - | chr1_1:18201394-18201413 | Msa0012110:intron | 15.0% |
| !! | GATAAAATTTATCAAAACTT+TGG | - | chr1_1:18201985-18202004 | Msa0012110:CDS | 15.0% |
| !!! | ATTAAACCATTTTTTAAACT+CGG | + | chr1_1:18202085-18202104 | None:intergenic | 15.0% |
| !! | CAAATTTAAAGAAGAAAAAA+AGG | + | chr1_1:18202361-18202380 | None:intergenic | 15.0% |
| !!! | TGTTTGTTTTAATGTTTATT+AGG | - | chr1_1:18202502-18202521 | Msa0012110:CDS | 15.0% |
| !! | ATATAAAATCATTGATGTTG+CGG | + | chr1_1:18201814-18201833 | None:intergenic | 20.0% |
| !!! | TCAATGATTTTATGTTTGTA+TGG | - | chr1_1:18201897-18201916 | Msa0012110:CDS | 20.0% |
| !! | AAAATTCCGAGTTTAAAAAA+TGG | - | chr1_1:18202076-18202095 | Msa0012110:intron | 20.0% |
| !! | ATATAAAATCATTGATGTTG+CGG | + | chr1_1:18201814-18201833 | None:intergenic | 20.0% |
| !!! | TCAATGATTTTATGTTTGTA+TGG | - | chr1_1:18201897-18201916 | Msa0012110:CDS | 20.0% |
| !! | AAAATTCCGAGTTTAAAAAA+TGG | - | chr1_1:18202076-18202095 | Msa0012110:intron | 20.0% |
| ! | ATATGTATTTGACTGCTATT+GGG | - | chr1_1:18201752-18201771 | Msa0012110:intron | 25.0% |
| ! | TATATGTATTTGACTGCTAT+TGG | - | chr1_1:18201829-18201848 | Msa0012110:intron | 25.0% |
| ! | ATATGTATTTGACTGCTATT+GGG | - | chr1_1:18201752-18201771 | Msa0012110:intron | 25.0% |
| ! | ACATAAAATCATTGATGTTG+CGG | + | chr1_1:18201892-18201911 | None:intergenic | 25.0% |
| !!! | TGGTTTAATTTCAAGTTTTC+AGG | - | chr1_1:18202005-18202024 | Msa0012110:CDS | 25.0% |
| ! | ATAAGATCAACAACATTAAG+TGG | + | chr1_1:18202133-18202152 | None:intergenic | 25.0% |
| ! | AAAAAATACCATCACATGAA+TGG | + | chr1_1:18202199-18202218 | None:intergenic | 25.0% |
| ! | ATAATCAATAGCAAAGATTG+AGG | + | chr1_1:18202228-18202247 | None:intergenic | 25.0% |
| !!! | CTTCTTTAAATTTGTTACCA+TGG | - | chr1_1:18202367-18202386 | Msa0012110:CDS | 25.0% |
| !! | CAACTTTTCATTTCATTGTA+TGG | - | chr1_1:18202441-18202460 | Msa0012110:intron | 25.0% |
| ! | ATATGTATTTGACTGCTATT+GGG | - | chr1_1:18201752-18201771 | Msa0012110:intron | 25.0% |
| ! | TATATGTATTTGACTGCTAT+TGG | - | chr1_1:18201829-18201848 | Msa0012110:intron | 25.0% |
| ! | ATATGTATTTGACTGCTATT+GGG | - | chr1_1:18201752-18201771 | Msa0012110:intron | 25.0% |
| ! | ACATAAAATCATTGATGTTG+CGG | + | chr1_1:18201892-18201911 | None:intergenic | 25.0% |
| !!! | TGGTTTAATTTCAAGTTTTC+AGG | - | chr1_1:18202005-18202024 | Msa0012110:CDS | 25.0% |
| ! | ATAAGATCAACAACATTAAG+TGG | + | chr1_1:18202133-18202152 | None:intergenic | 25.0% |
| ! | AAAAAATACCATCACATGAA+TGG | + | chr1_1:18202199-18202218 | None:intergenic | 25.0% |
| ! | ATAATCAATAGCAAAGATTG+AGG | + | chr1_1:18202228-18202247 | None:intergenic | 25.0% |
| !!! | CTTCTTTAAATTTGTTACCA+TGG | - | chr1_1:18202367-18202386 | Msa0012110:CDS | 25.0% |
| !! | CAACTTTTCATTTCATTGTA+TGG | - | chr1_1:18202441-18202460 | Msa0012110:intron | 25.0% |
| TCCAAGATAGAACATAAAGA+GGG | + | chr1_1:18201211-18201230 | None:intergenic | 30.0% | |
| TTCCAAGATAGAACATAAAG+AGG | + | chr1_1:18201212-18201231 | None:intergenic | 30.0% | |
| ! | TCACATTTCACAGATTTTCA+AGG | - | chr1_1:18201608-18201627 | Msa0012110:intron | 30.0% |
| ! | TGGAATATATTTTACCTGCA+GGG | + | chr1_1:18201636-18201655 | None:intergenic | 30.0% |
| ! | ATGGAATATATTTTACCTGC+AGG | + | chr1_1:18201637-18201656 | None:intergenic | 30.0% |
| ATACAAAGACAGATCAACAA+TGG | + | chr1_1:18201656-18201675 | None:intergenic | 30.0% | |
| CATATGTATTTGACTGCTAT+TGG | - | chr1_1:18201751-18201770 | Msa0012110:intron | 30.0% | |
| GTTGTCATAGTAACAAAATG+TGG | - | chr1_1:18201934-18201953 | Msa0012110:CDS | 30.0% | |
| ! | TTATTCCCATGTCAATTTTG+TGG | - | chr1_1:18202033-18202052 | Msa0012110:CDS | 30.0% |
| ! | TATTCCCATGTCAATTTTGT+GGG | - | chr1_1:18202034-18202053 | Msa0012110:CDS | 30.0% |
| TTATCCCACAAAATTGACAT+GGG | + | chr1_1:18202041-18202060 | None:intergenic | 30.0% | |
| ATTATCCCACAAAATTGACA+TGG | + | chr1_1:18202042-18202061 | None:intergenic | 30.0% | |
| ! | GTCAATTTTGTGGGATAATT+TGG | - | chr1_1:18202043-18202062 | Msa0012110:CDS | 30.0% |
| ! | TAATGATGATGAATTTGCCA+TGG | + | chr1_1:18202387-18202406 | None:intergenic | 30.0% |
| GCAATTTAAGCTTGCAATTA+TGG | - | chr1_1:18202583-18202602 | Msa0012110:CDS | 30.0% | |
| ATTTAAGCTTGCAATTATGG+AGG | - | chr1_1:18202586-18202605 | Msa0012110:CDS | 30.0% | |
| TCCAAGATAGAACATAAAGA+GGG | + | chr1_1:18201211-18201230 | None:intergenic | 30.0% | |
| TTCCAAGATAGAACATAAAG+AGG | + | chr1_1:18201212-18201231 | None:intergenic | 30.0% | |
| ! | TCACATTTCACAGATTTTCA+AGG | - | chr1_1:18201608-18201627 | Msa0012110:intron | 30.0% |
| ! | TGGAATATATTTTACCTGCA+GGG | + | chr1_1:18201636-18201655 | None:intergenic | 30.0% |
| ! | ATGGAATATATTTTACCTGC+AGG | + | chr1_1:18201637-18201656 | None:intergenic | 30.0% |
| ATACAAAGACAGATCAACAA+TGG | + | chr1_1:18201656-18201675 | None:intergenic | 30.0% | |
| CATATGTATTTGACTGCTAT+TGG | - | chr1_1:18201751-18201770 | Msa0012110:intron | 30.0% | |
| GTTGTCATAGTAACAAAATG+TGG | - | chr1_1:18201934-18201953 | Msa0012110:CDS | 30.0% | |
| ! | TTATTCCCATGTCAATTTTG+TGG | - | chr1_1:18202033-18202052 | Msa0012110:CDS | 30.0% |
| ! | TATTCCCATGTCAATTTTGT+GGG | - | chr1_1:18202034-18202053 | Msa0012110:CDS | 30.0% |
| TTATCCCACAAAATTGACAT+GGG | + | chr1_1:18202041-18202060 | None:intergenic | 30.0% | |
| ATTATCCCACAAAATTGACA+TGG | + | chr1_1:18202042-18202061 | None:intergenic | 30.0% | |
| ! | GTCAATTTTGTGGGATAATT+TGG | - | chr1_1:18202043-18202062 | Msa0012110:CDS | 30.0% |
| ! | TAATGATGATGAATTTGCCA+TGG | + | chr1_1:18202387-18202406 | None:intergenic | 30.0% |
| GCAATTTAAGCTTGCAATTA+TGG | - | chr1_1:18202583-18202602 | Msa0012110:CDS | 30.0% | |
| ATTTAAGCTTGCAATTATGG+AGG | - | chr1_1:18202586-18202605 | Msa0012110:CDS | 30.0% | |
| !!! | GTTCGCTATTTTTGTTCCTA+AGG | + | chr1_1:18200951-18200970 | None:intergenic | 35.0% |
| TAGGAACAAAAATAGCGAAC+AGG | - | chr1_1:18200951-18200970 | Msa0012110:CDS | 35.0% | |
| AGGTATATGACAATTCGATC+GGG | + | chr1_1:18201032-18201051 | None:intergenic | 35.0% | |
| GAGGTATATGACAATTCGAT+CGG | + | chr1_1:18201033-18201052 | None:intergenic | 35.0% | |
| ATTGTCGATGGTATAGTAGA+AGG | + | chr1_1:18201055-18201074 | None:intergenic | 35.0% | |
| ! | ACTGGATTTTGGATGAAGAA+GGG | - | chr1_1:18201132-18201151 | Msa0012110:intron | 35.0% |
| ATTACTCGAGACATTAATGG+TGG | - | chr1_1:18201156-18201175 | Msa0012110:intron | 35.0% | |
| TCCCTCTTTATGTTCTATCT+TGG | - | chr1_1:18201207-18201226 | Msa0012110:intron | 35.0% | |
| CTATCTTGGAAATTCTGTGA+AGG | - | chr1_1:18201221-18201240 | Msa0012110:intron | 35.0% | |
| GATTATGTACGAGTATGCAT+TGG | - | chr1_1:18201263-18201282 | Msa0012110:intron | 35.0% | |
| TTTCACAAATCTCATACCTG+AGG | + | chr1_1:18201297-18201316 | None:intergenic | 35.0% | |
| ACCTTCTTCAACATCAGATA+AGG | + | chr1_1:18201486-18201505 | None:intergenic | 35.0% | |
| TGATGTCACTCGAAAACTTA+AGG | - | chr1_1:18201526-18201545 | Msa0012110:intron | 35.0% | |
| GATGTCACTCGAAAACTTAA+GGG | - | chr1_1:18201527-18201546 | Msa0012110:intron | 35.0% | |
| ATGTCACTCGAAAACTTAAG+GGG | - | chr1_1:18201528-18201547 | Msa0012110:intron | 35.0% | |
| AACTCAATCCATTCATGTGA+TGG | - | chr1_1:18202188-18202207 | Msa0012110:intron | 35.0% | |
| ATTGTATGGTAGAGACAAGA+AGG | - | chr1_1:18202455-18202474 | Msa0012110:intron | 35.0% | |
| ATTGCAAGCTTAAATTGCTC+CGG | + | chr1_1:18202581-18202600 | None:intergenic | 35.0% | |
| !!! | GTTCGCTATTTTTGTTCCTA+AGG | + | chr1_1:18200951-18200970 | None:intergenic | 35.0% |
| TAGGAACAAAAATAGCGAAC+AGG | - | chr1_1:18200951-18200970 | Msa0012110:CDS | 35.0% | |
| AGGTATATGACAATTCGATC+GGG | + | chr1_1:18201032-18201051 | None:intergenic | 35.0% | |
| GAGGTATATGACAATTCGAT+CGG | + | chr1_1:18201033-18201052 | None:intergenic | 35.0% | |
| ATTGTCGATGGTATAGTAGA+AGG | + | chr1_1:18201055-18201074 | None:intergenic | 35.0% | |
| ! | ACTGGATTTTGGATGAAGAA+GGG | - | chr1_1:18201132-18201151 | Msa0012110:intron | 35.0% |
| ATTACTCGAGACATTAATGG+TGG | - | chr1_1:18201156-18201175 | Msa0012110:intron | 35.0% | |
| TCCCTCTTTATGTTCTATCT+TGG | - | chr1_1:18201207-18201226 | Msa0012110:intron | 35.0% | |
| CTATCTTGGAAATTCTGTGA+AGG | - | chr1_1:18201221-18201240 | Msa0012110:intron | 35.0% | |
| GATTATGTACGAGTATGCAT+TGG | - | chr1_1:18201263-18201282 | Msa0012110:intron | 35.0% | |
| TTTCACAAATCTCATACCTG+AGG | + | chr1_1:18201297-18201316 | None:intergenic | 35.0% | |
| ACCTTCTTCAACATCAGATA+AGG | + | chr1_1:18201486-18201505 | None:intergenic | 35.0% | |
| TGATGTCACTCGAAAACTTA+AGG | - | chr1_1:18201526-18201545 | Msa0012110:intron | 35.0% | |
| GATGTCACTCGAAAACTTAA+GGG | - | chr1_1:18201527-18201546 | Msa0012110:intron | 35.0% | |
| ATGTCACTCGAAAACTTAAG+GGG | - | chr1_1:18201528-18201547 | Msa0012110:intron | 35.0% | |
| AACTCAATCCATTCATGTGA+TGG | - | chr1_1:18202188-18202207 | Msa0012110:intron | 35.0% | |
| ATTGTATGGTAGAGACAAGA+AGG | - | chr1_1:18202455-18202474 | Msa0012110:intron | 35.0% | |
| ATTGCAAGCTTAAATTGCTC+CGG | + | chr1_1:18202581-18202600 | None:intergenic | 35.0% | |
| ! | TACTTGTTGGCTACTACCTT+AGG | - | chr1_1:18200932-18200951 | Msa0012110:CDS | 40.0% |
| GAACAGGTTCAGAATTTCCA+TGG | - | chr1_1:18200967-18200986 | Msa0012110:intron | 40.0% | |
| ACTATACCATCGACAATCGT+AGG | - | chr1_1:18201058-18201077 | Msa0012110:intron | 40.0% | |
| ! | GACTGGATTTTGGATGAAGA+AGG | - | chr1_1:18201131-18201150 | Msa0012110:intron | 40.0% |
| GGCATTACTCGAGACATTAA+TGG | - | chr1_1:18201153-18201172 | Msa0012110:intron | 40.0% | |
| ! | TAATGGTGGAGATGACAATG+TGG | - | chr1_1:18201170-18201189 | Msa0012110:intron | 40.0% |
| ! | TGGAGATGACAATGTGGTTT+TGG | - | chr1_1:18201176-18201195 | Msa0012110:intron | 40.0% |
| ! | GGAGATGACAATGTGGTTTT+GGG | - | chr1_1:18201177-18201196 | Msa0012110:intron | 40.0% |
| AAAACACGGCACACAACAAA+AGG | + | chr1_1:18201422-18201441 | None:intergenic | 40.0% | |
| GCCTTATCTGATGTTGAAGA+AGG | - | chr1_1:18201482-18201501 | Msa0012110:intron | 40.0% | |
| TGTCACTCGAAAACTTAAGG+GGG | - | chr1_1:18201529-18201548 | Msa0012110:intron | 40.0% | |
| ! | TACTTGTTGGCTACTACCTT+AGG | - | chr1_1:18200932-18200951 | Msa0012110:CDS | 40.0% |
| GAACAGGTTCAGAATTTCCA+TGG | - | chr1_1:18200967-18200986 | Msa0012110:intron | 40.0% | |
| ACTATACCATCGACAATCGT+AGG | - | chr1_1:18201058-18201077 | Msa0012110:intron | 40.0% | |
| ! | GACTGGATTTTGGATGAAGA+AGG | - | chr1_1:18201131-18201150 | Msa0012110:intron | 40.0% |
| GGCATTACTCGAGACATTAA+TGG | - | chr1_1:18201153-18201172 | Msa0012110:intron | 40.0% | |
| ! | TAATGGTGGAGATGACAATG+TGG | - | chr1_1:18201170-18201189 | Msa0012110:intron | 40.0% |
| ! | TGGAGATGACAATGTGGTTT+TGG | - | chr1_1:18201176-18201195 | Msa0012110:intron | 40.0% |
| ! | GGAGATGACAATGTGGTTTT+GGG | - | chr1_1:18201177-18201196 | Msa0012110:intron | 40.0% |
| AAAACACGGCACACAACAAA+AGG | + | chr1_1:18201422-18201441 | None:intergenic | 40.0% | |
| GCCTTATCTGATGTTGAAGA+AGG | - | chr1_1:18201482-18201501 | Msa0012110:intron | 40.0% | |
| TGTCACTCGAAAACTTAAGG+GGG | - | chr1_1:18201529-18201548 | Msa0012110:intron | 40.0% | |
| CAACAAGTATCTCGTCAGTG+GGG | + | chr1_1:18200921-18200940 | None:intergenic | 45.0% | |
| CCAACAAGTATCTCGTCAGT+GGG | + | chr1_1:18200922-18200941 | None:intergenic | 45.0% | |
| !! | TCCATGGTTCTGACCTCATT+AGG | - | chr1_1:18200983-18201002 | Msa0012110:intron | 45.0% |
| !! | CCATGGTTCTGACCTCATTA+GGG | - | chr1_1:18200984-18201003 | Msa0012110:intron | 45.0% |
| GTCGATGGTATAGTAGAAGG+AGG | + | chr1_1:18201052-18201071 | None:intergenic | 45.0% | |
| GAATTGCCTACGATTGTCGA+TGG | + | chr1_1:18201067-18201086 | None:intergenic | 45.0% | |
| TACTGCTTCACTGCCAAAGT+TGG | - | chr1_1:18201087-18201106 | Msa0012110:intron | 45.0% | |
| CTGGAGGGCAATCAAAAACA+CGG | + | chr1_1:18201436-18201455 | None:intergenic | 45.0% | |
| !! | TTTTGATTGCCCTCCAGCAA+TGG | - | chr1_1:18201439-18201458 | Msa0012110:intron | 45.0% |
| TGACAATGTTGTCTTCCACG+TGG | - | chr1_1:18202544-18202563 | Msa0012110:CDS | 45.0% | |
| CAACAAGTATCTCGTCAGTG+GGG | + | chr1_1:18200921-18200940 | None:intergenic | 45.0% | |
| CCAACAAGTATCTCGTCAGT+GGG | + | chr1_1:18200922-18200941 | None:intergenic | 45.0% | |
| !! | TCCATGGTTCTGACCTCATT+AGG | - | chr1_1:18200983-18201002 | Msa0012110:intron | 45.0% |
| !! | CCATGGTTCTGACCTCATTA+GGG | - | chr1_1:18200984-18201003 | Msa0012110:intron | 45.0% |
| GTCGATGGTATAGTAGAAGG+AGG | + | chr1_1:18201052-18201071 | None:intergenic | 45.0% | |
| GAATTGCCTACGATTGTCGA+TGG | + | chr1_1:18201067-18201086 | None:intergenic | 45.0% | |
| TACTGCTTCACTGCCAAAGT+TGG | - | chr1_1:18201087-18201106 | Msa0012110:intron | 45.0% | |
| CTGGAGGGCAATCAAAAACA+CGG | + | chr1_1:18201436-18201455 | None:intergenic | 45.0% | |
| !! | TTTTGATTGCCCTCCAGCAA+TGG | - | chr1_1:18201439-18201458 | Msa0012110:intron | 45.0% |
| TGACAATGTTGTCTTCCACG+TGG | - | chr1_1:18202544-18202563 | Msa0012110:CDS | 45.0% | |
| CCCACTGACGAGATACTTGT+TGG | - | chr1_1:18200919-18200938 | Msa0012110:CDS | 50.0% | |
| GCCAACAAGTATCTCGTCAG+TGG | + | chr1_1:18200923-18200942 | None:intergenic | 50.0% | |
| CCCTAATGAGGTCAGAACCA+TGG | + | chr1_1:18200987-18201006 | None:intergenic | 50.0% | |
| ACAGGTTCAGCTCCCTAATG+AGG | + | chr1_1:18200999-18201018 | None:intergenic | 50.0% | |
| CGATCGGGTCATACTCATAC+AGG | + | chr1_1:18201017-18201036 | None:intergenic | 50.0% | |
| CCAAAGTTGGCAGTGAGAGA+CGG | - | chr1_1:18201100-18201119 | Msa0012110:intron | 50.0% | |
| AGGACGCTGTCAGAACAAAC+TGG | - | chr1_1:18201241-18201260 | Msa0012110:intron | 50.0% | |
| ATGGATCTGGGTGCAGAGTT+TGG | - | chr1_1:18201458-18201477 | Msa0012110:intron | 50.0% | |
| GTTGAAGAAGGTGATGCTGC+TGG | - | chr1_1:18201494-18201513 | Msa0012110:intron | 50.0% | |
| ACTCGAAAACTTAAGGGGGC+TGG | - | chr1_1:18201533-18201552 | Msa0012110:intron | 50.0% | |
| CTCGAAAACTTAAGGGGGCT+GGG | - | chr1_1:18201534-18201553 | Msa0012110:intron | 50.0% | |
| TCGAAAACTTAAGGGGGCTG+GGG | - | chr1_1:18201535-18201554 | Msa0012110:intron | 50.0% | |
| !! | CTGGTAGTAGTGATGGTGGT+GGG | - | chr1_1:18201564-18201583 | Msa0012110:intron | 50.0% |
| !! | TGGTAGTAGTGATGGTGGTG+GGG | - | chr1_1:18201565-18201584 | Msa0012110:intron | 50.0% |
| !! | AGATTTTCAAGGCTCCCTGC+AGG | - | chr1_1:18201619-18201638 | Msa0012110:intron | 50.0% |
| CCCACTGACGAGATACTTGT+TGG | - | chr1_1:18200919-18200938 | Msa0012110:CDS | 50.0% | |
| GCCAACAAGTATCTCGTCAG+TGG | + | chr1_1:18200923-18200942 | None:intergenic | 50.0% | |
| CCCTAATGAGGTCAGAACCA+TGG | + | chr1_1:18200987-18201006 | None:intergenic | 50.0% | |
| ACAGGTTCAGCTCCCTAATG+AGG | + | chr1_1:18200999-18201018 | None:intergenic | 50.0% | |
| CGATCGGGTCATACTCATAC+AGG | + | chr1_1:18201017-18201036 | None:intergenic | 50.0% | |
| CCAAAGTTGGCAGTGAGAGA+CGG | - | chr1_1:18201100-18201119 | Msa0012110:intron | 50.0% | |
| AGGACGCTGTCAGAACAAAC+TGG | - | chr1_1:18201241-18201260 | Msa0012110:intron | 50.0% | |
| ATGGATCTGGGTGCAGAGTT+TGG | - | chr1_1:18201458-18201477 | Msa0012110:intron | 50.0% | |
| GTTGAAGAAGGTGATGCTGC+TGG | - | chr1_1:18201494-18201513 | Msa0012110:intron | 50.0% | |
| ACTCGAAAACTTAAGGGGGC+TGG | - | chr1_1:18201533-18201552 | Msa0012110:intron | 50.0% | |
| CTCGAAAACTTAAGGGGGCT+GGG | - | chr1_1:18201534-18201553 | Msa0012110:intron | 50.0% | |
| TCGAAAACTTAAGGGGGCTG+GGG | - | chr1_1:18201535-18201554 | Msa0012110:intron | 50.0% | |
| !! | CTGGTAGTAGTGATGGTGGT+GGG | - | chr1_1:18201564-18201583 | Msa0012110:intron | 50.0% |
| !! | TGGTAGTAGTGATGGTGGTG+GGG | - | chr1_1:18201565-18201584 | Msa0012110:intron | 50.0% |
| !! | AGATTTTCAAGGCTCCCTGC+AGG | - | chr1_1:18201619-18201638 | Msa0012110:intron | 50.0% |
| CTATGCTTCCACCTGGTGCT+GGG | - | chr1_1:18200890-18200909 | Msa0012110:CDS | 55.0% | |
| CCGTCTCTCACTGCCAACTT+TGG | + | chr1_1:18201103-18201122 | None:intergenic | 55.0% | |
| ! | GGCACTGCAGGACTGGATTT+TGG | - | chr1_1:18201121-18201140 | Msa0012110:intron | 55.0% |
| !! | TGCATTGGCTGACAAGCCTC+AGG | - | chr1_1:18201278-18201297 | Msa0012110:intron | 55.0% |
| TTGCCCTCCAGCAATGGATC+TGG | - | chr1_1:18201445-18201464 | Msa0012110:intron | 55.0% | |
| TGCCCTCCAGCAATGGATCT+GGG | - | chr1_1:18201446-18201465 | Msa0012110:intron | 55.0% | |
| CACCCAGATCCATTGCTGGA+GGG | + | chr1_1:18201451-18201470 | None:intergenic | 55.0% | |
| TCTGCACCCAGATCCATTGC+TGG | + | chr1_1:18201455-18201474 | None:intergenic | 55.0% | |
| !! | GCTGGTAGTAGTGATGGTGG+TGG | - | chr1_1:18201563-18201582 | Msa0012110:intron | 55.0% |
| CCACGTGGAAGCTATAACGC+CGG | - | chr1_1:18202559-18202578 | Msa0012110:CDS | 55.0% | |
| CTATGCTTCCACCTGGTGCT+GGG | - | chr1_1:18200890-18200909 | Msa0012110:CDS | 55.0% | |
| CCGTCTCTCACTGCCAACTT+TGG | + | chr1_1:18201103-18201122 | None:intergenic | 55.0% | |
| ! | GGCACTGCAGGACTGGATTT+TGG | - | chr1_1:18201121-18201140 | Msa0012110:intron | 55.0% |
| !! | TGCATTGGCTGACAAGCCTC+AGG | - | chr1_1:18201278-18201297 | Msa0012110:intron | 55.0% |
| TTGCCCTCCAGCAATGGATC+TGG | - | chr1_1:18201445-18201464 | Msa0012110:intron | 55.0% | |
| TGCCCTCCAGCAATGGATCT+GGG | - | chr1_1:18201446-18201465 | Msa0012110:intron | 55.0% | |
| CACCCAGATCCATTGCTGGA+GGG | + | chr1_1:18201451-18201470 | None:intergenic | 55.0% | |
| TCTGCACCCAGATCCATTGC+TGG | + | chr1_1:18201455-18201474 | None:intergenic | 55.0% | |
| !! | GCTGGTAGTAGTGATGGTGG+TGG | - | chr1_1:18201563-18201582 | Msa0012110:intron | 55.0% |
| CCACGTGGAAGCTATAACGC+CGG | - | chr1_1:18202559-18202578 | Msa0012110:CDS | 55.0% | |
| GCTATGCTTCCACCTGGTGC+TGG | - | chr1_1:18200889-18200908 | Msa0012110:CDS | 60.0% | |
| GCACCCAGATCCATTGCTGG+AGG | + | chr1_1:18201452-18201471 | None:intergenic | 60.0% | |
| AAACTTAAGGGGGCTGGGGC+TGG | - | chr1_1:18201539-18201558 | Msa0012110:intron | 60.0% | |
| AACTTAAGGGGGCTGGGGCT+GGG | - | chr1_1:18201540-18201559 | Msa0012110:intron | 60.0% | |
| ! | GCTGGGGCTGGTAGTAGTGA+TGG | - | chr1_1:18201557-18201576 | Msa0012110:intron | 60.0% |
| ! | GGGGCTGGTAGTAGTGATGG+TGG | - | chr1_1:18201560-18201579 | Msa0012110:intron | 60.0% |
| CCGGCGTTATAGCTTCCACG+TGG | + | chr1_1:18202562-18202581 | None:intergenic | 60.0% | |
| GCTATGCTTCCACCTGGTGC+TGG | - | chr1_1:18200889-18200908 | Msa0012110:CDS | 60.0% | |
| GCACCCAGATCCATTGCTGG+AGG | + | chr1_1:18201452-18201471 | None:intergenic | 60.0% | |
| AAACTTAAGGGGGCTGGGGC+TGG | - | chr1_1:18201539-18201558 | Msa0012110:intron | 60.0% | |
| AACTTAAGGGGGCTGGGGCT+GGG | - | chr1_1:18201540-18201559 | Msa0012110:intron | 60.0% | |
| ! | GCTGGGGCTGGTAGTAGTGA+TGG | - | chr1_1:18201557-18201576 | Msa0012110:intron | 60.0% |
| ! | GGGGCTGGTAGTAGTGATGG+TGG | - | chr1_1:18201560-18201579 | Msa0012110:intron | 60.0% |
| CCGGCGTTATAGCTTCCACG+TGG | + | chr1_1:18202562-18202581 | None:intergenic | 60.0% | |
| GGGAGAAACCCAGCACCAGG+TGG | + | chr1_1:18200901-18200920 | None:intergenic | 65.0% | |
| GTGGGGAGAAACCCAGCACC+AGG | + | chr1_1:18200904-18200923 | None:intergenic | 65.0% | |
| GCAGTGAGAGACGGCACTGC+AGG | - | chr1_1:18201109-18201128 | Msa0012110:intron | 65.0% | |
| GAGAGACGGCACTGCAGGAC+TGG | - | chr1_1:18201114-18201133 | Msa0012110:intron | 65.0% | |
| ACTTAAGGGGGCTGGGGCTG+GGG | - | chr1_1:18201541-18201560 | Msa0012110:intron | 65.0% | |
| GGGAGAAACCCAGCACCAGG+TGG | + | chr1_1:18200901-18200920 | None:intergenic | 65.0% | |
| GTGGGGAGAAACCCAGCACC+AGG | + | chr1_1:18200904-18200923 | None:intergenic | 65.0% | |
| GCAGTGAGAGACGGCACTGC+AGG | - | chr1_1:18201109-18201128 | Msa0012110:intron | 65.0% | |
| GAGAGACGGCACTGCAGGAC+TGG | - | chr1_1:18201114-18201133 | Msa0012110:intron | 65.0% | |
| ACTTAAGGGGGCTGGGGCTG+GGG | - | chr1_1:18201541-18201560 | Msa0012110:intron | 65.0% | |
| !! | GGTGGTGGGGCTGCTGAGCA+AGG | - | chr1_1:18201578-18201597 | Msa0012110:intron | 70.0% |
| !! | GGTGGTGGGGCTGCTGAGCA+AGG | - | chr1_1:18201578-18201597 | Msa0012110:intron | 70.0% |
| ! | AAGGGGGCTGGGGCTGGGGC+TGG | - | chr1_1:18201545-18201564 | Msa0012110:intron | 80.0% |
| ! | AAGGGGGCTGGGGCTGGGGC+TGG | - | chr1_1:18201545-18201564 | Msa0012110:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 18200886 | 18202622 | 18200886 | ID=Msa0012110;Name=Msa0012110 |
| chr1_1 | mRNA | 18200886 | 18202622 | 18200886 | ID=Msa0012110-mRNA-1;Parent=Msa0012110;Name=Msa0012110-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0|0|0|0.5|1|1|4|0|224 |
| chr1_1 | exon | 18202492 | 18202622 | 18202492 | ID=Msa0012110-mRNA-1:exon:6709;Parent=Msa0012110-mRNA-1 |
| chr1_1 | exon | 18202209 | 18202428 | 18202209 | ID=Msa0012110-mRNA-1:exon:6708;Parent=Msa0012110-mRNA-1 |
| chr1_1 | exon | 18201868 | 18202092 | 18201868 | ID=Msa0012110-mRNA-1:exon:6707;Parent=Msa0012110-mRNA-1 |
| chr1_1 | exon | 18200886 | 18200984 | 18200886 | ID=Msa0012110-mRNA-1:exon:6706;Parent=Msa0012110-mRNA-1 |
| chr1_1 | CDS | 18202492 | 18202622 | 18202492 | ID=Msa0012110-mRNA-1:cds;Parent=Msa0012110-mRNA-1 |
| chr1_1 | CDS | 18202209 | 18202428 | 18202209 | ID=Msa0012110-mRNA-1:cds;Parent=Msa0012110-mRNA-1 |
| chr1_1 | CDS | 18201868 | 18202092 | 18201868 | ID=Msa0012110-mRNA-1:cds;Parent=Msa0012110-mRNA-1 |
| chr1_1 | CDS | 18200886 | 18200984 | 18200886 | ID=Msa0012110-mRNA-1:cds;Parent=Msa0012110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
