Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0012300 | sp|Q8GT74|NIP2_ARATH | 64.667 | 150 | 53 | 0 | 300 | 449 | 89 | 238 | 3.31e-63 | 209 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0012300 | MtrunA17_Chr5g0437131 | 84.667 | 300 | 38 | 1 | 9 | 300 | 239 | 538 | 2.37e-164 | 482 |
| Msa0012300 | MtrunA17_Chr8g0371291 | 78.667 | 150 | 25 | 1 | 300 | 449 | 80 | 222 | 5.43e-80 | 249 |
| Msa0012300 | MtrunA17_Chr6g0480541 | 61.991 | 221 | 62 | 5 | 134 | 342 | 859 | 1069 | 2.38e-74 | 255 |
| Msa0012300 | MtrunA17_Chr5g0406031 | 68.000 | 150 | 47 | 1 | 300 | 449 | 83 | 231 | 4.13e-66 | 213 |
| Msa0012300 | MtrunA17_Chr6g0480481 | 52.174 | 161 | 33 | 2 | 148 | 300 | 9 | 133 | 9.66e-42 | 148 |
| Msa0012300 | MtrunA17_Chr8g0369241 | 38.503 | 187 | 92 | 6 | 131 | 300 | 91 | 271 | 2.93e-24 | 107 |
| Msa0012300 | MtrunA17_Chr4g0060981 | 35.443 | 158 | 86 | 4 | 300 | 449 | 67 | 216 | 7.20e-22 | 94.0 |
| Msa0012300 | MtrunA17_Chr3g0126701 | 77.358 | 53 | 12 | 0 | 449 | 501 | 510 | 562 | 1.37e-20 | 95.9 |
| Msa0012300 | MtrunA17_Chr1g0147121 | 61.224 | 49 | 19 | 0 | 453 | 501 | 483 | 531 | 6.13e-14 | 74.7 |
| Msa0012300 | MtrunA17_Chr5g0444161 | 33.333 | 132 | 66 | 6 | 329 | 449 | 107 | 227 | 9.21e-14 | 70.9 |
| Msa0012300 | MtrunA17_Chr5g0444141 | 33.065 | 124 | 79 | 3 | 329 | 450 | 142 | 263 | 1.18e-12 | 68.2 |
| Msa0012300 | MtrunA17_Chr1g0210061 | 33.562 | 146 | 80 | 4 | 168 | 300 | 605 | 746 | 1.84e-12 | 70.1 |
| Msa0012300 | MtrunA17_Chr8g0388231 | 43.421 | 76 | 42 | 1 | 378 | 453 | 309 | 383 | 3.80e-12 | 68.2 |
| Msa0012300 | MtrunA17_Chr4g0067591 | 35.065 | 77 | 45 | 1 | 373 | 449 | 75 | 146 | 5.04e-12 | 66.6 |
| Msa0012300 | MtrunA17_Chr5g0411081 | 37.209 | 86 | 47 | 1 | 364 | 449 | 112 | 190 | 5.21e-12 | 67.4 |
| Msa0012300 | MtrunA17_Chr6g0451031 | 48.889 | 45 | 23 | 0 | 405 | 449 | 67 | 111 | 5.38e-12 | 63.2 |
| Msa0012300 | MtrunA17_Chr7g0246761 | 32.558 | 129 | 64 | 5 | 327 | 449 | 21 | 132 | 5.90e-12 | 64.7 |
| Msa0012300 | MtrunA17_Chr8g0366561 | 43.243 | 74 | 41 | 1 | 378 | 451 | 114 | 186 | 8.24e-12 | 66.6 |
| Msa0012300 | MtrunA17_Chr3g0128771 | 40.506 | 79 | 40 | 2 | 376 | 451 | 89 | 163 | 1.20e-11 | 63.5 |
| Msa0012300 | MtrunA17_Chr8g0369571 | 48.889 | 45 | 23 | 0 | 405 | 449 | 88 | 132 | 2.50e-11 | 62.8 |
| Msa0012300 | MtrunA17_Chr6g0451051 | 31.915 | 94 | 61 | 1 | 377 | 470 | 39 | 129 | 4.93e-11 | 61.2 |
| Msa0012300 | MtrunA17_Chr8g0383871 | 33.010 | 103 | 64 | 2 | 377 | 479 | 111 | 208 | 6.15e-11 | 62.4 |
| Msa0012300 | MtrunA17_Chr6g0451041 | 42.188 | 64 | 37 | 0 | 407 | 470 | 18 | 81 | 6.43e-11 | 59.3 |
| Msa0012300 | MtrunA17_Chr5g0437361 | 37.209 | 86 | 53 | 1 | 371 | 456 | 68 | 152 | 7.43e-11 | 60.8 |
| Msa0012300 | MtrunA17_Chr8g0383921 | 33.645 | 107 | 60 | 3 | 376 | 479 | 109 | 207 | 7.76e-11 | 62.0 |
| Msa0012300 | MtrunA17_Chr5g0409201 | 42.857 | 56 | 26 | 1 | 402 | 451 | 82 | 137 | 8.26e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0012300 | AT2G40120.1 | 72.941 | 170 | 38 | 1 | 139 | 300 | 227 | 396 | 4.27e-78 | 255 |
| Msa0012300 | AT1G73460.2 | 66.857 | 175 | 50 | 1 | 134 | 300 | 819 | 993 | 2.45e-71 | 246 |
| Msa0012300 | AT1G73460.1 | 66.857 | 175 | 50 | 1 | 134 | 300 | 819 | 993 | 2.45e-71 | 246 |
| Msa0012300 | AT1G73450.1 | 66.857 | 175 | 50 | 1 | 134 | 300 | 802 | 976 | 2.81e-71 | 246 |
| Msa0012300 | AT3G17750.1 | 64.571 | 175 | 54 | 1 | 134 | 300 | 788 | 962 | 2.28e-67 | 235 |
| Msa0012300 | AT2G17730.1 | 64.667 | 150 | 53 | 0 | 300 | 449 | 89 | 238 | 3.37e-64 | 209 |
| Msa0012300 | AT4G35840.1 | 64.667 | 150 | 53 | 0 | 300 | 449 | 84 | 233 | 2.25e-63 | 206 |
| Msa0012300 | AT5G66070.5 | 63.333 | 150 | 50 | 1 | 300 | 449 | 74 | 218 | 6.50e-60 | 197 |
| Msa0012300 | AT5G66070.1 | 63.333 | 150 | 50 | 1 | 300 | 449 | 74 | 218 | 6.50e-60 | 197 |
| Msa0012300 | AT2G17730.2 | 64.336 | 143 | 51 | 0 | 300 | 442 | 89 | 231 | 5.03e-59 | 196 |
| Msa0012300 | AT4G35840.2 | 53.297 | 182 | 53 | 1 | 300 | 449 | 84 | 265 | 1.46e-56 | 190 |
| Msa0012300 | AT5G66070.2 | 54.598 | 174 | 50 | 2 | 300 | 449 | 74 | 242 | 3.03e-54 | 183 |
| Msa0012300 | AT5G66070.4 | 58.407 | 113 | 42 | 1 | 300 | 412 | 74 | 181 | 1.81e-34 | 128 |
| Msa0012300 | AT5G66070.3 | 48.175 | 137 | 42 | 2 | 300 | 412 | 74 | 205 | 3.64e-29 | 114 |
| Msa0012300 | AT1G74410.1 | 36.000 | 150 | 93 | 1 | 302 | 451 | 74 | 220 | 1.51e-24 | 102 |
| Msa0012300 | AT5G35980.2 | 37.705 | 183 | 91 | 6 | 149 | 314 | 92 | 268 | 5.00e-23 | 103 |
| Msa0012300 | AT5G35980.1 | 37.705 | 183 | 91 | 6 | 149 | 314 | 92 | 268 | 5.39e-23 | 103 |
| Msa0012300 | AT5G35980.3 | 37.705 | 183 | 91 | 6 | 149 | 314 | 57 | 233 | 6.95e-23 | 103 |
| Msa0012300 | AT3G20395.1 | 33.333 | 123 | 76 | 2 | 329 | 450 | 97 | 214 | 6.17e-16 | 77.4 |
| Msa0012300 | AT3G18773.1 | 39.560 | 91 | 49 | 2 | 372 | 458 | 97 | 185 | 2.29e-13 | 69.7 |
| Msa0012300 | AT5G53430.1 | 52.632 | 57 | 27 | 0 | 447 | 503 | 486 | 542 | 4.47e-13 | 72.4 |
| Msa0012300 | AT1G49200.1 | 41.892 | 74 | 41 | 1 | 376 | 449 | 107 | 178 | 9.32e-13 | 68.2 |
| Msa0012300 | AT4G27910.1 | 42.500 | 80 | 25 | 2 | 445 | 503 | 448 | 527 | 6.86e-12 | 68.6 |
| Msa0012300 | AT5G05280.1 | 37.363 | 91 | 51 | 2 | 363 | 451 | 71 | 157 | 1.75e-11 | 63.5 |
| Msa0012300 | AT5G17600.1 | 40.000 | 90 | 49 | 2 | 360 | 449 | 100 | 184 | 2.37e-11 | 65.9 |
| Msa0012300 | AT1G49210.1 | 40.541 | 74 | 42 | 1 | 376 | 449 | 106 | 177 | 2.88e-11 | 63.9 |
| Msa0012300 | AT2G17450.1 | 37.179 | 78 | 45 | 1 | 376 | 449 | 67 | 144 | 3.68e-11 | 62.8 |
| Msa0012300 | AT3G16720.1 | 36.364 | 77 | 45 | 1 | 373 | 449 | 89 | 161 | 4.16e-11 | 64.7 |
| Msa0012300 | AT5G53110.1 | 29.197 | 137 | 77 | 5 | 321 | 456 | 262 | 379 | 5.32e-11 | 64.7 |
| Msa0012300 | AT5G01880.1 | 41.558 | 77 | 41 | 2 | 376 | 451 | 76 | 149 | 6.29e-11 | 61.2 |
| Msa0012300 | AT2G27940.1 | 39.241 | 79 | 38 | 2 | 377 | 452 | 114 | 185 | 7.36e-11 | 62.8 |
| Msa0012300 | AT1G72310.1 | 34.066 | 91 | 56 | 1 | 361 | 451 | 85 | 171 | 8.31e-11 | 63.9 |
| Msa0012300 | AT1G13350.3 | 29.054 | 148 | 90 | 2 | 165 | 300 | 507 | 651 | 8.72e-11 | 65.1 |
Find 100 sgRNAs with CRISPR-Local
Find 318 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTAGCTACCTTAATTTAA+AGG | 0.143063 | 1_1:+18484073 | Msa0012300:CDS |
| CTTTGGCATTCGAATAATTC+TGG | 0.197162 | 1_1:+18484896 | Msa0012300:CDS |
| CATAAATTCAACCAAGAATA+TGG | 0.227119 | 1_1:+18484719 | Msa0012300:CDS |
| GCTTAATTTCCTTTAAATTA+AGG | 0.237843 | 1_1:-18484082 | None:intergenic |
| ATGCTTCACCACCATATTCT+TGG | 0.272074 | 1_1:-18484730 | None:intergenic |
| TTAAGGTAGCTAATGTTTAT+AGG | 0.288253 | 1_1:-18484065 | None:intergenic |
| TGCTCACTGTCTCTGCATAA+TGG | 0.302576 | 1_1:-18485292 | None:intergenic |
| ACAGAAAAGCAAGCACTTAA+TGG | 0.303631 | 1_1:+18485415 | Msa0012300:CDS |
| TTCCTGTTCAATTTGCCTTC+AGG | 0.305106 | 1_1:+18485171 | Msa0012300:CDS |
| TTGTATGTTCTATTGATCTT+TGG | 0.316674 | 1_1:+18484879 | Msa0012300:CDS |
| CATTACTCGACAGTGTTTAG+AGG | 0.319594 | 1_1:+18484778 | Msa0012300:CDS |
| GGTTAAACGTATGATGATAA+TGG | 0.326660 | 1_1:-18485228 | None:intergenic |
| CATTCGAATAATTCTGGAAT+AGG | 0.333342 | 1_1:+18484902 | Msa0012300:CDS |
| CACTTGTGATTGAGACTATT+GGG | 0.340792 | 1_1:-18485117 | None:intergenic |
| GTTAAACGTATGATGATAAT+GGG | 0.346709 | 1_1:-18485227 | None:intergenic |
| ATGCGCAATGGCTTCTTTCT+CGG | 0.367067 | 1_1:-18483982 | None:intergenic |
| TCACTTGTGATTGAGACTAT+TGG | 0.368196 | 1_1:-18485118 | None:intergenic |
| TTCTAACAGTCTCTCCCATT+TGG | 0.383802 | 1_1:-18485198 | None:intergenic |
| GCTCACTGTCTCTGCATAAT+GGG | 0.397596 | 1_1:-18485291 | None:intergenic |
| GCAATCTGAACTATGCTTCA+TGG | 0.399375 | 1_1:-18484165 | None:intergenic |
| AGACAGAATTATGAGGCTTC+AGG | 0.401315 | 1_1:-18484841 | None:intergenic |
| ATTGCAATATTTACATAACT+TGG | 0.409904 | 1_1:+18484802 | Msa0012300:CDS |
| TAAGAAGCTTGATTTCATCT+AGG | 0.411237 | 1_1:-18484574 | None:intergenic |
| TGCCTTCAGGATTTCCAAAT+GGG | 0.419108 | 1_1:+18485184 | Msa0012300:CDS |
| GAGTGAAGAACTCCATGTTC+CGG | 0.421411 | 1_1:+18484280 | Msa0012300:CDS |
| TTTCAACATATCTTTGACAT+TGG | 0.427382 | 1_1:+18485055 | Msa0012300:CDS |
| GTTCAGCAGGTTCTTGTAGT+GGG | 0.431132 | 1_1:+18484039 | Msa0012300:CDS |
| ATCCTGAAGGCAAATTGAAC+AGG | 0.433788 | 1_1:-18485173 | None:intergenic |
| GTTGCTGCAGCAGCTCACGC+CGG | 0.436700 | 1_1:+18486128 | Msa0012300:intron |
| GGATGTGACAGAGGCTTACT+AGG | 0.444182 | 1_1:+18485076 | Msa0012300:CDS |
| GGCTTCTTTCTCGGCACTGA+GGG | 0.450284 | 1_1:-18483973 | None:intergenic |
| TTATGACTATTTCTACCATC+AGG | 0.460782 | 1_1:+18484646 | Msa0012300:CDS |
| TCTCCATCTGTGGCAGCCTC+CGG | 0.462617 | 1_1:-18484299 | None:intergenic |
| TTGCTGCAGCAGCTCACGCC+GGG | 0.462792 | 1_1:+18486129 | Msa0012300:intron |
| TTGCCTTCAGGATTTCCAAA+TGG | 0.467728 | 1_1:+18485183 | Msa0012300:CDS |
| CTACAAGAACCTGCTGAACC+TGG | 0.473048 | 1_1:-18484035 | None:intergenic |
| TAAGTTTGCACGCAGAAGTT+CGG | 0.485105 | 1_1:-18484687 | None:intergenic |
| AAAAGCAGTCCAGGTTCAGC+AGG | 0.497375 | 1_1:+18484026 | Msa0012300:CDS |
| CACTTAGTTGTGTGCAAGTG+TGG | 0.500438 | 1_1:+18485382 | Msa0012300:CDS |
| CTGTGGCAGCCTCCGGAACA+TGG | 0.502526 | 1_1:-18484292 | None:intergenic |
| GGTTCAGCAGGTTCTTGTAG+TGG | 0.505056 | 1_1:+18484038 | Msa0012300:CDS |
| TTGCAATATTTACATAACTT+GGG | 0.506178 | 1_1:+18484803 | Msa0012300:CDS |
| AGTATGTGGCGTTTATCTCC+CGG | 0.506715 | 1_1:-18484617 | None:intergenic |
| GTTCCGGAGGCTGCCACAGA+TGG | 0.508408 | 1_1:+18484296 | Msa0012300:CDS |
| ATAGAGAAGACAGAATTATG+AGG | 0.508809 | 1_1:-18484848 | None:intergenic |
| CACACAACTAAGTGTAGGCT+TGG | 0.511853 | 1_1:-18485373 | None:intergenic |
| CCATTGCTTTCAATCCCATT+CGG | 0.516665 | 1_1:-18484236 | None:intergenic |
| ACCTACCTTGCATTGACAAG+TGG | 0.517649 | 1_1:+18485248 | Msa0012300:CDS |
| GGAGTTCTTCACTCAAATAT+CGG | 0.520249 | 1_1:-18484271 | None:intergenic |
| ATCTGTTTCAACAACTTCGA+TGG | 0.530198 | 1_1:-18484210 | None:intergenic |
| GCCATTTGTTGATCATGCCC+CGG | 0.533576 | 1_1:-18486147 | None:intergenic |
| TTGAAACAGATCTACCGAAT+GGG | 0.535513 | 1_1:+18484222 | Msa0012300:CDS |
| TAAAGGAAATTAAGCTGAGT+CGG | 0.536864 | 1_1:+18484090 | Msa0012300:CDS |
| TCGGTTCAGCTACCTTCAGT+AGG | 0.540246 | 1_1:+18484492 | Msa0012300:CDS |
| GATTGTGCTGAACACGGTCA+TGG | 0.546919 | 1_1:+18484442 | Msa0012300:CDS |
| GTGCATGGAAAGAATAGGAC+TGG | 0.553009 | 1_1:+18484395 | Msa0012300:CDS |
| AACTTCAGAATTATGCGCAA+TGG | 0.563755 | 1_1:-18483994 | None:intergenic |
| GTATGTGGCGTTTATCTCCC+GGG | 0.564712 | 1_1:-18484616 | None:intergenic |
| TTCAGCAGGTTCTTGTAGTG+GGG | 0.568017 | 1_1:+18484040 | Msa0012300:CDS |
| GTACAAGTCTCCCACTCACT+AGG | 0.571667 | 1_1:-18484958 | None:intergenic |
| AGTCATAAAGACGCAGTATG+TGG | 0.573921 | 1_1:-18484631 | None:intergenic |
| GACAAGTGGCTCATCAAGCA+TGG | 0.579677 | 1_1:+18485262 | Msa0012300:CDS |
| CTCCCATTTGGAAATCCTGA+AGG | 0.579740 | 1_1:-18485186 | None:intergenic |
| GAATTGTGCATGGAAAGAAT+AGG | 0.580039 | 1_1:+18484390 | Msa0012300:CDS |
| TTCAGTAGGGATGCTCTCGA+TGG | 0.583985 | 1_1:+18484506 | Msa0012300:CDS |
| CGGTTCAGCTACCTTCAGTA+GGG | 0.590898 | 1_1:+18484493 | Msa0012300:CDS |
| TGCTGCAGCAGCTCACGCCG+GGG | 0.593738 | 1_1:+18486130 | Msa0012300:intron |
| GTTCAAAGTCAGATGGGTGC+AGG | 0.598923 | 1_1:+18485013 | Msa0012300:CDS |
| AAAAGCAAGCACTTAATGGA+TGG | 0.599900 | 1_1:+18485419 | Msa0012300:CDS |
| CAATGAATAAATGTTCCTGA+TGG | 0.601057 | 1_1:-18484661 | None:intergenic |
| GAATGCTGTTCAAAGTCAGA+TGG | 0.601226 | 1_1:+18485006 | Msa0012300:CDS |
| GGGATTGAAAGCAATGGAGT+AGG | 0.601533 | 1_1:+18484242 | Msa0012300:CDS |
| TTATTACTAGCCTAGTGAGT+GGG | 0.602053 | 1_1:+18484948 | Msa0012300:CDS |
| ATGAGCCACTTGTCAATGCA+AGG | 0.605600 | 1_1:-18485253 | None:intergenic |
| GTTGAAACAGATCTACCGAA+TGG | 0.607989 | 1_1:+18484221 | Msa0012300:CDS |
| CCGAATGGGATTGAAAGCAA+TGG | 0.608264 | 1_1:+18484236 | Msa0012300:CDS |
| TTTGACATTGGATGTGACAG+AGG | 0.609823 | 1_1:+18485067 | Msa0012300:CDS |
| TTTGAGCTAAGAATTGTGCA+TGG | 0.611242 | 1_1:+18484380 | Msa0012300:CDS |
| GACTGGATTTGAAGAAAACA+AGG | 0.612197 | 1_1:+18484412 | Msa0012300:CDS |
| TGGCTTCTTTCTCGGCACTG+AGG | 0.612609 | 1_1:-18483974 | None:intergenic |
| ATCGAGAGCATCCCTACTGA+AGG | 0.612994 | 1_1:-18484504 | None:intergenic |
| GCATAGTTCAGATTGCTACA+AGG | 0.615746 | 1_1:+18484172 | Msa0012300:CDS |
| TACTATGTGACAGATTATCT+CGG | 0.618368 | 1_1:+18484473 | Msa0012300:CDS |
| ATTATTATCCTCTCCATCTG+TGG | 0.619270 | 1_1:-18484309 | None:intergenic |
| TGAACACGGTCATGGCTGAA+AGG | 0.620232 | 1_1:+18484450 | Msa0012300:CDS |
| CTTGTCGATAAGCACGACCC+GGG | 0.628203 | 1_1:+18484599 | Msa0012300:CDS |
| ACTTGCACACAACTAAGTGT+AGG | 0.640898 | 1_1:-18485378 | None:intergenic |
| ACTTTGAACAGCATTCAACA+TGG | 0.643300 | 1_1:-18484999 | None:intergenic |
| GGAGGCTGCCACAGATGGAG+AGG | 0.645603 | 1_1:+18484301 | Msa0012300:CDS |
| ATTATTACTAGCCTAGTGAG+TGG | 0.653310 | 1_1:+18484947 | Msa0012300:CDS |
| TGAAGAACTCCATGTTCCGG+AGG | 0.656619 | 1_1:+18484283 | Msa0012300:CDS |
| AATGCTGTTCAAAGTCAGAT+GGG | 0.656650 | 1_1:+18485007 | Msa0012300:CDS |
| ACTTGTCGATAAGCACGACC+CGG | 0.656700 | 1_1:+18484598 | Msa0012300:CDS |
| GCTTCTTTCTCGGCACTGAG+GGG | 0.663612 | 1_1:-18483972 | None:intergenic |
| AAATTCAACCAAGAATATGG+TGG | 0.668921 | 1_1:+18484722 | Msa0012300:CDS |
| TTAAACGTATGATGATAATG+GGG | 0.679275 | 1_1:-18485226 | None:intergenic |
| AGACTTGTACGTGAAAGAGT+TGG | 0.691935 | 1_1:+18484971 | Msa0012300:CDS |
| GCCACTTGTCAATGCAAGGT+AGG | 0.694066 | 1_1:-18485249 | None:intergenic |
| AATGGATGGCAACAACACAA+AGG | 0.695166 | 1_1:+18485433 | Msa0012300:CDS |
| AGTGCTGATTGTGCTGAACA+CGG | 0.717577 | 1_1:+18484436 | Msa0012300:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GCTTAATTTCCTTTAAATTA+AGG | - | chr1_1:18484085-18484104 | None:intergenic | 20.0% |
| !! | GAAGATTATTAAAAATGACA+AGG | + | chr1_1:18484535-18484554 | Msa0012300:CDS | 20.0% |
| !! | ATTGCAATATTTACATAACT+TGG | + | chr1_1:18484802-18484821 | Msa0012300:CDS | 20.0% |
| !! | TTGCAATATTTACATAACTT+GGG | + | chr1_1:18484803-18484822 | Msa0012300:CDS | 20.0% |
| !!! | AAGATTAATGTTTTTTGCAA+TGG | + | chr1_1:18485331-18485350 | Msa0012300:CDS | 20.0% |
| !! | TCTAGAAAATTACTAAGATT+TGG | - | chr1_1:18485779-18485798 | None:intergenic | 20.0% |
| !!! | TTTTATTTTATTTCAACCCA+TGG | + | chr1_1:18485818-18485837 | Msa0012300:intron | 20.0% |
| !!! | TTTATTTTATTTCAACCCAT+GGG | + | chr1_1:18485819-18485838 | Msa0012300:intron | 20.0% |
| !! | GCTTAATTTCCTTTAAATTA+AGG | - | chr1_1:18484085-18484104 | None:intergenic | 20.0% |
| !! | GAAGATTATTAAAAATGACA+AGG | + | chr1_1:18484535-18484554 | Msa0012300:CDS | 20.0% |
| !! | ATTGCAATATTTACATAACT+TGG | + | chr1_1:18484802-18484821 | Msa0012300:CDS | 20.0% |
| !! | TTGCAATATTTACATAACTT+GGG | + | chr1_1:18484803-18484822 | Msa0012300:CDS | 20.0% |
| !!! | AAGATTAATGTTTTTTGCAA+TGG | + | chr1_1:18485331-18485350 | Msa0012300:CDS | 20.0% |
| !! | TCTAGAAAATTACTAAGATT+TGG | - | chr1_1:18485779-18485798 | None:intergenic | 20.0% |
| !!! | TTTTATTTTATTTCAACCCA+TGG | + | chr1_1:18485818-18485837 | Msa0012300:intron | 20.0% |
| !!! | TTTATTTTATTTCAACCCAT+GGG | + | chr1_1:18485819-18485838 | Msa0012300:intron | 20.0% |
| ! | TTAAGGTAGCTAATGTTTAT+AGG | - | chr1_1:18484068-18484087 | None:intergenic | 25.0% |
| ! | CATTAGCTACCTTAATTTAA+AGG | + | chr1_1:18484073-18484092 | Msa0012300:CDS | 25.0% |
| ! | CATAAATTCAACCAAGAATA+TGG | + | chr1_1:18484719-18484738 | Msa0012300:CDS | 25.0% |
| ! | TTGTATGTTCTATTGATCTT+TGG | + | chr1_1:18484879-18484898 | Msa0012300:CDS | 25.0% |
| ! | TTTCAACATATCTTTGACAT+TGG | + | chr1_1:18485055-18485074 | Msa0012300:CDS | 25.0% |
| !! | TTAAACGTATGATGATAATG+GGG | - | chr1_1:18485229-18485248 | None:intergenic | 25.0% |
| ! | GTTAAACGTATGATGATAAT+GGG | - | chr1_1:18485230-18485249 | None:intergenic | 25.0% |
| !! | TGTTTTCCAATCTCTTAATT+TGG | - | chr1_1:18485461-18485480 | None:intergenic | 25.0% |
| ! | ATGCTACTATATTTCTTCAA+TGG | + | chr1_1:18485545-18485564 | Msa0012300:intron | 25.0% |
| ! | TGCTACTATATTTCTTCAAT+GGG | + | chr1_1:18485546-18485565 | Msa0012300:intron | 25.0% |
| !!! | AAACTTGTTCTTTTCTATCT+AGG | + | chr1_1:18486009-18486028 | Msa0012300:intron | 25.0% |
| ! | TTAAGGTAGCTAATGTTTAT+AGG | - | chr1_1:18484068-18484087 | None:intergenic | 25.0% |
| ! | CATTAGCTACCTTAATTTAA+AGG | + | chr1_1:18484073-18484092 | Msa0012300:CDS | 25.0% |
| ! | CATAAATTCAACCAAGAATA+TGG | + | chr1_1:18484719-18484738 | Msa0012300:CDS | 25.0% |
| ! | TTGTATGTTCTATTGATCTT+TGG | + | chr1_1:18484879-18484898 | Msa0012300:CDS | 25.0% |
| ! | TTTCAACATATCTTTGACAT+TGG | + | chr1_1:18485055-18485074 | Msa0012300:CDS | 25.0% |
| !! | TTAAACGTATGATGATAATG+GGG | - | chr1_1:18485229-18485248 | None:intergenic | 25.0% |
| ! | GTTAAACGTATGATGATAAT+GGG | - | chr1_1:18485230-18485249 | None:intergenic | 25.0% |
| !! | TGTTTTCCAATCTCTTAATT+TGG | - | chr1_1:18485461-18485480 | None:intergenic | 25.0% |
| ! | ATGCTACTATATTTCTTCAA+TGG | + | chr1_1:18485545-18485564 | Msa0012300:intron | 25.0% |
| ! | TGCTACTATATTTCTTCAAT+GGG | + | chr1_1:18485546-18485565 | Msa0012300:intron | 25.0% |
| !!! | AAACTTGTTCTTTTCTATCT+AGG | + | chr1_1:18486009-18486028 | Msa0012300:intron | 25.0% |
| TAAAGGAAATTAAGCTGAGT+CGG | + | chr1_1:18484090-18484109 | Msa0012300:CDS | 30.0% | |
| ! | TCGGAATGATTTTCATATGA+AGG | + | chr1_1:18484109-18484128 | Msa0012300:CDS | 30.0% |
| ! | CGGAATGATTTTCATATGAA+GGG | + | chr1_1:18484110-18484129 | Msa0012300:CDS | 30.0% |
| !! | CATCTTGACTGTATTTTAAG+AGG | - | chr1_1:18484346-18484365 | None:intergenic | 30.0% |
| TACTATGTGACAGATTATCT+CGG | + | chr1_1:18484473-18484492 | Msa0012300:CDS | 30.0% | |
| TAAGAAGCTTGATTTCATCT+AGG | - | chr1_1:18484577-18484596 | None:intergenic | 30.0% | |
| !! | TTATGACTATTTCTACCATC+AGG | + | chr1_1:18484646-18484665 | Msa0012300:CDS | 30.0% |
| CAATGAATAAATGTTCCTGA+TGG | - | chr1_1:18484664-18484683 | None:intergenic | 30.0% | |
| AAATTCAACCAAGAATATGG+TGG | + | chr1_1:18484722-18484741 | Msa0012300:CDS | 30.0% | |
| ATAGAGAAGACAGAATTATG+AGG | - | chr1_1:18484851-18484870 | None:intergenic | 30.0% | |
| !! | CATTCGAATAATTCTGGAAT+AGG | + | chr1_1:18484902-18484921 | Msa0012300:CDS | 30.0% |
| GGTTAAACGTATGATGATAA+TGG | - | chr1_1:18485231-18485250 | None:intergenic | 30.0% | |
| AAGGTTCCAAATTAAGAGAT+TGG | + | chr1_1:18485452-18485471 | Msa0012300:intron | 30.0% | |
| GTATTATTGTGAAAGACTCT+AGG | + | chr1_1:18485482-18485501 | Msa0012300:intron | 30.0% | |
| TTTATCAAAATGAGAACTCG+AGG | + | chr1_1:18485680-18485699 | Msa0012300:intron | 30.0% | |
| GAAAGAAATAACAAACCCAT+GGG | - | chr1_1:18485837-18485856 | None:intergenic | 30.0% | |
| TGAAAGAAATAACAAACCCA+TGG | - | chr1_1:18485838-18485857 | None:intergenic | 30.0% | |
| ! | AATCAAAAAGTGTACCTCTT+AGG | - | chr1_1:18485884-18485903 | None:intergenic | 30.0% |
| CGACAAACCTATCAAAATAA+GGG | - | chr1_1:18485955-18485974 | None:intergenic | 30.0% | |
| TAAAGGAAATTAAGCTGAGT+CGG | + | chr1_1:18484090-18484109 | Msa0012300:CDS | 30.0% | |
| ! | TCGGAATGATTTTCATATGA+AGG | + | chr1_1:18484109-18484128 | Msa0012300:CDS | 30.0% |
| ! | CGGAATGATTTTCATATGAA+GGG | + | chr1_1:18484110-18484129 | Msa0012300:CDS | 30.0% |
| !! | CATCTTGACTGTATTTTAAG+AGG | - | chr1_1:18484346-18484365 | None:intergenic | 30.0% |
| TACTATGTGACAGATTATCT+CGG | + | chr1_1:18484473-18484492 | Msa0012300:CDS | 30.0% | |
| TAAGAAGCTTGATTTCATCT+AGG | - | chr1_1:18484577-18484596 | None:intergenic | 30.0% | |
| !! | TTATGACTATTTCTACCATC+AGG | + | chr1_1:18484646-18484665 | Msa0012300:CDS | 30.0% |
| CAATGAATAAATGTTCCTGA+TGG | - | chr1_1:18484664-18484683 | None:intergenic | 30.0% | |
| AAATTCAACCAAGAATATGG+TGG | + | chr1_1:18484722-18484741 | Msa0012300:CDS | 30.0% | |
| ATAGAGAAGACAGAATTATG+AGG | - | chr1_1:18484851-18484870 | None:intergenic | 30.0% | |
| !! | CATTCGAATAATTCTGGAAT+AGG | + | chr1_1:18484902-18484921 | Msa0012300:CDS | 30.0% |
| GGTTAAACGTATGATGATAA+TGG | - | chr1_1:18485231-18485250 | None:intergenic | 30.0% | |
| AAGGTTCCAAATTAAGAGAT+TGG | + | chr1_1:18485452-18485471 | Msa0012300:intron | 30.0% | |
| GTATTATTGTGAAAGACTCT+AGG | + | chr1_1:18485482-18485501 | Msa0012300:intron | 30.0% | |
| TTTATCAAAATGAGAACTCG+AGG | + | chr1_1:18485680-18485699 | Msa0012300:intron | 30.0% | |
| GAAAGAAATAACAAACCCAT+GGG | - | chr1_1:18485837-18485856 | None:intergenic | 30.0% | |
| TGAAAGAAATAACAAACCCA+TGG | - | chr1_1:18485838-18485857 | None:intergenic | 30.0% | |
| ! | AATCAAAAAGTGTACCTCTT+AGG | - | chr1_1:18485884-18485903 | None:intergenic | 30.0% |
| CGACAAACCTATCAAAATAA+GGG | - | chr1_1:18485955-18485974 | None:intergenic | 30.0% | |
| AACTTCAGAATTATGCGCAA+TGG | - | chr1_1:18483997-18484016 | None:intergenic | 35.0% | |
| ATCTGTTTCAACAACTTCGA+TGG | - | chr1_1:18484213-18484232 | None:intergenic | 35.0% | |
| TTGAAACAGATCTACCGAAT+GGG | + | chr1_1:18484222-18484241 | Msa0012300:CDS | 35.0% | |
| GGAGTTCTTCACTCAAATAT+CGG | - | chr1_1:18484274-18484293 | None:intergenic | 35.0% | |
| ATTATTATCCTCTCCATCTG+TGG | - | chr1_1:18484312-18484331 | None:intergenic | 35.0% | |
| TTTGAGCTAAGAATTGTGCA+TGG | + | chr1_1:18484380-18484399 | Msa0012300:CDS | 35.0% | |
| GAATTGTGCATGGAAAGAAT+AGG | + | chr1_1:18484390-18484409 | Msa0012300:CDS | 35.0% | |
| GACTGGATTTGAAGAAAACA+AGG | + | chr1_1:18484412-18484431 | Msa0012300:CDS | 35.0% | |
| CTTTGGCATTCGAATAATTC+TGG | + | chr1_1:18484896-18484915 | Msa0012300:CDS | 35.0% | |
| ! | ATTATTACTAGCCTAGTGAG+TGG | + | chr1_1:18484947-18484966 | Msa0012300:CDS | 35.0% |
| ! | TTATTACTAGCCTAGTGAGT+GGG | + | chr1_1:18484948-18484967 | Msa0012300:CDS | 35.0% |
| ACTTTGAACAGCATTCAACA+TGG | - | chr1_1:18485002-18485021 | None:intergenic | 35.0% | |
| AATGCTGTTCAAAGTCAGAT+GGG | + | chr1_1:18485007-18485026 | Msa0012300:CDS | 35.0% | |
| CACTTGTGATTGAGACTATT+GGG | - | chr1_1:18485120-18485139 | None:intergenic | 35.0% | |
| TCACTTGTGATTGAGACTAT+TGG | - | chr1_1:18485121-18485140 | None:intergenic | 35.0% | |
| !! | GACAACAATTTTGATGCTTG+TGG | + | chr1_1:18485139-18485158 | Msa0012300:CDS | 35.0% |
| ACAGAAAAGCAAGCACTTAA+TGG | + | chr1_1:18485415-18485434 | Msa0012300:CDS | 35.0% | |
| AAAAGCAAGCACTTAATGGA+TGG | + | chr1_1:18485419-18485438 | Msa0012300:CDS | 35.0% | |
| TAGAACTTATGTAGCCTAAG+AGG | + | chr1_1:18485867-18485886 | Msa0012300:intron | 35.0% | |
| TCGAGAATTTCTCTCAATTC+TGG | + | chr1_1:18485916-18485935 | Msa0012300:intron | 35.0% | |
| AGAATTTCTCTCAATTCTGG+TGG | + | chr1_1:18485919-18485938 | Msa0012300:intron | 35.0% | |
| CCTATCAAAATAAGGGTTTC+CGG | - | chr1_1:18485948-18485967 | None:intergenic | 35.0% | |
| GCGACAAACCTATCAAAATA+AGG | - | chr1_1:18485956-18485975 | None:intergenic | 35.0% | |
| GCGACAAACTTGTGAAAATA+GGG | - | chr1_1:18485985-18486004 | None:intergenic | 35.0% | |
| AGCGACAAACTTGTGAAAAT+AGG | - | chr1_1:18485986-18486005 | None:intergenic | 35.0% | |
| GGGATGCAATACATAAAGTA+TGG | + | chr1_1:18486074-18486093 | Msa0012300:intron | 35.0% | |
| AACTTCAGAATTATGCGCAA+TGG | - | chr1_1:18483997-18484016 | None:intergenic | 35.0% | |
| ATCTGTTTCAACAACTTCGA+TGG | - | chr1_1:18484213-18484232 | None:intergenic | 35.0% | |
| TTGAAACAGATCTACCGAAT+GGG | + | chr1_1:18484222-18484241 | Msa0012300:CDS | 35.0% | |
| GGAGTTCTTCACTCAAATAT+CGG | - | chr1_1:18484274-18484293 | None:intergenic | 35.0% | |
| ATTATTATCCTCTCCATCTG+TGG | - | chr1_1:18484312-18484331 | None:intergenic | 35.0% | |
| TTTGAGCTAAGAATTGTGCA+TGG | + | chr1_1:18484380-18484399 | Msa0012300:CDS | 35.0% | |
| GAATTGTGCATGGAAAGAAT+AGG | + | chr1_1:18484390-18484409 | Msa0012300:CDS | 35.0% | |
| GACTGGATTTGAAGAAAACA+AGG | + | chr1_1:18484412-18484431 | Msa0012300:CDS | 35.0% | |
| CTTTGGCATTCGAATAATTC+TGG | + | chr1_1:18484896-18484915 | Msa0012300:CDS | 35.0% | |
| ! | ATTATTACTAGCCTAGTGAG+TGG | + | chr1_1:18484947-18484966 | Msa0012300:CDS | 35.0% |
| ! | TTATTACTAGCCTAGTGAGT+GGG | + | chr1_1:18484948-18484967 | Msa0012300:CDS | 35.0% |
| ACTTTGAACAGCATTCAACA+TGG | - | chr1_1:18485002-18485021 | None:intergenic | 35.0% | |
| AATGCTGTTCAAAGTCAGAT+GGG | + | chr1_1:18485007-18485026 | Msa0012300:CDS | 35.0% | |
| CACTTGTGATTGAGACTATT+GGG | - | chr1_1:18485120-18485139 | None:intergenic | 35.0% | |
| TCACTTGTGATTGAGACTAT+TGG | - | chr1_1:18485121-18485140 | None:intergenic | 35.0% | |
| !! | GACAACAATTTTGATGCTTG+TGG | + | chr1_1:18485139-18485158 | Msa0012300:CDS | 35.0% |
| ACAGAAAAGCAAGCACTTAA+TGG | + | chr1_1:18485415-18485434 | Msa0012300:CDS | 35.0% | |
| AAAAGCAAGCACTTAATGGA+TGG | + | chr1_1:18485419-18485438 | Msa0012300:CDS | 35.0% | |
| TAGAACTTATGTAGCCTAAG+AGG | + | chr1_1:18485867-18485886 | Msa0012300:intron | 35.0% | |
| TCGAGAATTTCTCTCAATTC+TGG | + | chr1_1:18485916-18485935 | Msa0012300:intron | 35.0% | |
| AGAATTTCTCTCAATTCTGG+TGG | + | chr1_1:18485919-18485938 | Msa0012300:intron | 35.0% | |
| CCTATCAAAATAAGGGTTTC+CGG | - | chr1_1:18485948-18485967 | None:intergenic | 35.0% | |
| GCGACAAACCTATCAAAATA+AGG | - | chr1_1:18485956-18485975 | None:intergenic | 35.0% | |
| GCGACAAACTTGTGAAAATA+GGG | - | chr1_1:18485985-18486004 | None:intergenic | 35.0% | |
| AGCGACAAACTTGTGAAAAT+AGG | - | chr1_1:18485986-18486005 | None:intergenic | 35.0% | |
| GGGATGCAATACATAAAGTA+TGG | + | chr1_1:18486074-18486093 | Msa0012300:intron | 35.0% | |
| GCAATCTGAACTATGCTTCA+TGG | - | chr1_1:18484168-18484187 | None:intergenic | 40.0% | |
| GCATAGTTCAGATTGCTACA+AGG | + | chr1_1:18484172-18484191 | Msa0012300:CDS | 40.0% | |
| GTTGAAACAGATCTACCGAA+TGG | + | chr1_1:18484221-18484240 | Msa0012300:CDS | 40.0% | |
| CCATTGCTTTCAATCCCATT+CGG | - | chr1_1:18484239-18484258 | None:intergenic | 40.0% | |
| AGTCATAAAGACGCAGTATG+TGG | - | chr1_1:18484634-18484653 | None:intergenic | 40.0% | |
| TAAGTTTGCACGCAGAAGTT+CGG | - | chr1_1:18484690-18484709 | None:intergenic | 40.0% | |
| ATGCTTCACCACCATATTCT+TGG | - | chr1_1:18484733-18484752 | None:intergenic | 40.0% | |
| CATTACTCGACAGTGTTTAG+AGG | + | chr1_1:18484778-18484797 | Msa0012300:CDS | 40.0% | |
| AGACAGAATTATGAGGCTTC+AGG | - | chr1_1:18484844-18484863 | None:intergenic | 40.0% | |
| AGACTTGTACGTGAAAGAGT+TGG | + | chr1_1:18484971-18484990 | Msa0012300:CDS | 40.0% | |
| GAATGCTGTTCAAAGTCAGA+TGG | + | chr1_1:18485006-18485025 | Msa0012300:CDS | 40.0% | |
| TTTGACATTGGATGTGACAG+AGG | + | chr1_1:18485067-18485086 | Msa0012300:CDS | 40.0% | |
| TTCCTGTTCAATTTGCCTTC+AGG | + | chr1_1:18485171-18485190 | Msa0012300:CDS | 40.0% | |
| ATCCTGAAGGCAAATTGAAC+AGG | - | chr1_1:18485176-18485195 | None:intergenic | 40.0% | |
| TTGCCTTCAGGATTTCCAAA+TGG | + | chr1_1:18485183-18485202 | Msa0012300:CDS | 40.0% | |
| TGCCTTCAGGATTTCCAAAT+GGG | + | chr1_1:18485184-18485203 | Msa0012300:CDS | 40.0% | |
| TTCTAACAGTCTCTCCCATT+TGG | - | chr1_1:18485201-18485220 | None:intergenic | 40.0% | |
| ACTTGCACACAACTAAGTGT+AGG | - | chr1_1:18485381-18485400 | None:intergenic | 40.0% | |
| ! | TGTGCAAGTGTGGTTTTTGT+GGG | + | chr1_1:18485392-18485411 | Msa0012300:CDS | 40.0% |
| AATGGATGGCAACAACACAA+AGG | + | chr1_1:18485433-18485452 | Msa0012300:CDS | 40.0% | |
| TTCACCATCCATTGTTCTAG+AGG | - | chr1_1:18485511-18485530 | None:intergenic | 40.0% | |
| ! | TCTAGAACAATGGATGGTGA+AGG | + | chr1_1:18485510-18485529 | Msa0012300:intron | 40.0% |
| ATCCTCGCATTTCACTCAAT+GGG | + | chr1_1:18485603-18485622 | Msa0012300:intron | 40.0% | |
| ATTGGAGGAGTAAACATGCA+TGG | + | chr1_1:18485650-18485669 | Msa0012300:intron | 40.0% | |
| TTGGAGGAGTAAACATGCAT+GGG | + | chr1_1:18485651-18485670 | Msa0012300:intron | 40.0% | |
| !!! | CCGGAAACCCTTATTTTGAT+AGG | + | chr1_1:18485945-18485964 | Msa0012300:intron | 40.0% |
| GCAATCTGAACTATGCTTCA+TGG | - | chr1_1:18484168-18484187 | None:intergenic | 40.0% | |
| GCATAGTTCAGATTGCTACA+AGG | + | chr1_1:18484172-18484191 | Msa0012300:CDS | 40.0% | |
| GTTGAAACAGATCTACCGAA+TGG | + | chr1_1:18484221-18484240 | Msa0012300:CDS | 40.0% | |
| CCATTGCTTTCAATCCCATT+CGG | - | chr1_1:18484239-18484258 | None:intergenic | 40.0% | |
| AGTCATAAAGACGCAGTATG+TGG | - | chr1_1:18484634-18484653 | None:intergenic | 40.0% | |
| TAAGTTTGCACGCAGAAGTT+CGG | - | chr1_1:18484690-18484709 | None:intergenic | 40.0% | |
| ATGCTTCACCACCATATTCT+TGG | - | chr1_1:18484733-18484752 | None:intergenic | 40.0% | |
| CATTACTCGACAGTGTTTAG+AGG | + | chr1_1:18484778-18484797 | Msa0012300:CDS | 40.0% | |
| AGACAGAATTATGAGGCTTC+AGG | - | chr1_1:18484844-18484863 | None:intergenic | 40.0% | |
| AGACTTGTACGTGAAAGAGT+TGG | + | chr1_1:18484971-18484990 | Msa0012300:CDS | 40.0% | |
| GAATGCTGTTCAAAGTCAGA+TGG | + | chr1_1:18485006-18485025 | Msa0012300:CDS | 40.0% | |
| TTTGACATTGGATGTGACAG+AGG | + | chr1_1:18485067-18485086 | Msa0012300:CDS | 40.0% | |
| TTCCTGTTCAATTTGCCTTC+AGG | + | chr1_1:18485171-18485190 | Msa0012300:CDS | 40.0% | |
| ATCCTGAAGGCAAATTGAAC+AGG | - | chr1_1:18485176-18485195 | None:intergenic | 40.0% | |
| TTGCCTTCAGGATTTCCAAA+TGG | + | chr1_1:18485183-18485202 | Msa0012300:CDS | 40.0% | |
| TGCCTTCAGGATTTCCAAAT+GGG | + | chr1_1:18485184-18485203 | Msa0012300:CDS | 40.0% | |
| TTCTAACAGTCTCTCCCATT+TGG | - | chr1_1:18485201-18485220 | None:intergenic | 40.0% | |
| ACTTGCACACAACTAAGTGT+AGG | - | chr1_1:18485381-18485400 | None:intergenic | 40.0% | |
| ! | TGTGCAAGTGTGGTTTTTGT+GGG | + | chr1_1:18485392-18485411 | Msa0012300:CDS | 40.0% |
| AATGGATGGCAACAACACAA+AGG | + | chr1_1:18485433-18485452 | Msa0012300:CDS | 40.0% | |
| TTCACCATCCATTGTTCTAG+AGG | - | chr1_1:18485511-18485530 | None:intergenic | 40.0% | |
| ! | TCTAGAACAATGGATGGTGA+AGG | + | chr1_1:18485510-18485529 | Msa0012300:intron | 40.0% |
| ATCCTCGCATTTCACTCAAT+GGG | + | chr1_1:18485603-18485622 | Msa0012300:intron | 40.0% | |
| ATTGGAGGAGTAAACATGCA+TGG | + | chr1_1:18485650-18485669 | Msa0012300:intron | 40.0% | |
| TTGGAGGAGTAAACATGCAT+GGG | + | chr1_1:18485651-18485670 | Msa0012300:intron | 40.0% | |
| !!! | CCGGAAACCCTTATTTTGAT+AGG | + | chr1_1:18485945-18485964 | Msa0012300:intron | 40.0% |
| ATGCGCAATGGCTTCTTTCT+CGG | - | chr1_1:18483985-18484004 | None:intergenic | 45.0% | |
| !! | CCTGGACTGCTTTTGCAAAA+TGG | - | chr1_1:18484020-18484039 | None:intergenic | 45.0% |
| ! | CCATTTTGCAAAAGCAGTCC+AGG | + | chr1_1:18484017-18484036 | Msa0012300:CDS | 45.0% |
| GTTCAGCAGGTTCTTGTAGT+GGG | + | chr1_1:18484039-18484058 | Msa0012300:CDS | 45.0% | |
| TTCAGCAGGTTCTTGTAGTG+GGG | + | chr1_1:18484040-18484059 | Msa0012300:CDS | 45.0% | |
| CCGAATGGGATTGAAAGCAA+TGG | + | chr1_1:18484236-18484255 | Msa0012300:CDS | 45.0% | |
| GGGATTGAAAGCAATGGAGT+AGG | + | chr1_1:18484242-18484261 | Msa0012300:CDS | 45.0% | |
| GAGTGAAGAACTCCATGTTC+CGG | + | chr1_1:18484280-18484299 | Msa0012300:CDS | 45.0% | |
| GTGCATGGAAAGAATAGGAC+TGG | + | chr1_1:18484395-18484414 | Msa0012300:CDS | 45.0% | |
| !! | AGTGCTGATTGTGCTGAACA+CGG | + | chr1_1:18484436-18484455 | Msa0012300:CDS | 45.0% |
| AGTATGTGGCGTTTATCTCC+CGG | - | chr1_1:18484620-18484639 | None:intergenic | 45.0% | |
| CTCCCATTTGGAAATCCTGA+AGG | - | chr1_1:18485189-18485208 | None:intergenic | 45.0% | |
| ! | ACCTACCTTGCATTGACAAG+TGG | + | chr1_1:18485248-18485267 | Msa0012300:CDS | 45.0% |
| ATGAGCCACTTGTCAATGCA+AGG | - | chr1_1:18485256-18485275 | None:intergenic | 45.0% | |
| GCTCACTGTCTCTGCATAAT+GGG | - | chr1_1:18485294-18485313 | None:intergenic | 45.0% | |
| TGCTCACTGTCTCTGCATAA+TGG | - | chr1_1:18485295-18485314 | None:intergenic | 45.0% | |
| CACACAACTAAGTGTAGGCT+TGG | - | chr1_1:18485376-18485395 | None:intergenic | 45.0% | |
| CACTTAGTTGTGTGCAAGTG+TGG | + | chr1_1:18485382-18485401 | Msa0012300:CDS | 45.0% | |
| ! | GTGTGCAAGTGTGGTTTTTG+TGG | + | chr1_1:18485391-18485410 | Msa0012300:CDS | 45.0% |
| !! | CTAGGCTACCTCTAGAACAA+TGG | + | chr1_1:18485500-18485519 | Msa0012300:intron | 45.0% |
| !! | GCTACCTCTAGAACAATGGA+TGG | + | chr1_1:18485504-18485523 | Msa0012300:intron | 45.0% |
| CATCCTCGCATTTCACTCAA+TGG | + | chr1_1:18485602-18485621 | Msa0012300:intron | 45.0% | |
| ATCCCATTGAGTGAAATGCG+AGG | - | chr1_1:18485608-18485627 | None:intergenic | 45.0% | |
| CATTTCACTCAATGGGATCC+AGG | + | chr1_1:18485610-18485629 | Msa0012300:intron | 45.0% | |
| !! | CTCTCAATTCTGGTGGATTC+CGG | + | chr1_1:18485926-18485945 | Msa0012300:intron | 45.0% |
| CTTCCGTACTGCGTCAATAT+GGG | + | chr1_1:18486054-18486073 | Msa0012300:intron | 45.0% | |
| CATCCCATATTGACGCAGTA+CGG | - | chr1_1:18486060-18486079 | None:intergenic | 45.0% | |
| ATGCGCAATGGCTTCTTTCT+CGG | - | chr1_1:18483985-18484004 | None:intergenic | 45.0% | |
| !! | CCTGGACTGCTTTTGCAAAA+TGG | - | chr1_1:18484020-18484039 | None:intergenic | 45.0% |
| ! | CCATTTTGCAAAAGCAGTCC+AGG | + | chr1_1:18484017-18484036 | Msa0012300:CDS | 45.0% |
| GTTCAGCAGGTTCTTGTAGT+GGG | + | chr1_1:18484039-18484058 | Msa0012300:CDS | 45.0% | |
| TTCAGCAGGTTCTTGTAGTG+GGG | + | chr1_1:18484040-18484059 | Msa0012300:CDS | 45.0% | |
| CCGAATGGGATTGAAAGCAA+TGG | + | chr1_1:18484236-18484255 | Msa0012300:CDS | 45.0% | |
| GGGATTGAAAGCAATGGAGT+AGG | + | chr1_1:18484242-18484261 | Msa0012300:CDS | 45.0% | |
| GAGTGAAGAACTCCATGTTC+CGG | + | chr1_1:18484280-18484299 | Msa0012300:CDS | 45.0% | |
| GTGCATGGAAAGAATAGGAC+TGG | + | chr1_1:18484395-18484414 | Msa0012300:CDS | 45.0% | |
| !! | AGTGCTGATTGTGCTGAACA+CGG | + | chr1_1:18484436-18484455 | Msa0012300:CDS | 45.0% |
| AGTATGTGGCGTTTATCTCC+CGG | - | chr1_1:18484620-18484639 | None:intergenic | 45.0% | |
| CTCCCATTTGGAAATCCTGA+AGG | - | chr1_1:18485189-18485208 | None:intergenic | 45.0% | |
| ! | ACCTACCTTGCATTGACAAG+TGG | + | chr1_1:18485248-18485267 | Msa0012300:CDS | 45.0% |
| ATGAGCCACTTGTCAATGCA+AGG | - | chr1_1:18485256-18485275 | None:intergenic | 45.0% | |
| GCTCACTGTCTCTGCATAAT+GGG | - | chr1_1:18485294-18485313 | None:intergenic | 45.0% | |
| TGCTCACTGTCTCTGCATAA+TGG | - | chr1_1:18485295-18485314 | None:intergenic | 45.0% | |
| CACACAACTAAGTGTAGGCT+TGG | - | chr1_1:18485376-18485395 | None:intergenic | 45.0% | |
| CACTTAGTTGTGTGCAAGTG+TGG | + | chr1_1:18485382-18485401 | Msa0012300:CDS | 45.0% | |
| ! | GTGTGCAAGTGTGGTTTTTG+TGG | + | chr1_1:18485391-18485410 | Msa0012300:CDS | 45.0% |
| !! | CTAGGCTACCTCTAGAACAA+TGG | + | chr1_1:18485500-18485519 | Msa0012300:intron | 45.0% |
| !! | GCTACCTCTAGAACAATGGA+TGG | + | chr1_1:18485504-18485523 | Msa0012300:intron | 45.0% |
| CATCCTCGCATTTCACTCAA+TGG | + | chr1_1:18485602-18485621 | Msa0012300:intron | 45.0% | |
| ATCCCATTGAGTGAAATGCG+AGG | - | chr1_1:18485608-18485627 | None:intergenic | 45.0% | |
| CATTTCACTCAATGGGATCC+AGG | + | chr1_1:18485610-18485629 | Msa0012300:intron | 45.0% | |
| !! | CTCTCAATTCTGGTGGATTC+CGG | + | chr1_1:18485926-18485945 | Msa0012300:intron | 45.0% |
| CTTCCGTACTGCGTCAATAT+GGG | + | chr1_1:18486054-18486073 | Msa0012300:intron | 45.0% | |
| CATCCCATATTGACGCAGTA+CGG | - | chr1_1:18486060-18486079 | None:intergenic | 45.0% | |
| AAAAGCAGTCCAGGTTCAGC+AGG | + | chr1_1:18484026-18484045 | Msa0012300:CDS | 50.0% | |
| CTACAAGAACCTGCTGAACC+TGG | - | chr1_1:18484038-18484057 | None:intergenic | 50.0% | |
| GGTTCAGCAGGTTCTTGTAG+TGG | + | chr1_1:18484038-18484057 | Msa0012300:CDS | 50.0% | |
| TGAAGAACTCCATGTTCCGG+AGG | + | chr1_1:18484283-18484302 | Msa0012300:CDS | 50.0% | |
| GATTGTGCTGAACACGGTCA+TGG | + | chr1_1:18484442-18484461 | Msa0012300:CDS | 50.0% | |
| TGAACACGGTCATGGCTGAA+AGG | + | chr1_1:18484450-18484469 | Msa0012300:CDS | 50.0% | |
| TCGGTTCAGCTACCTTCAGT+AGG | + | chr1_1:18484492-18484511 | Msa0012300:CDS | 50.0% | |
| CGGTTCAGCTACCTTCAGTA+GGG | + | chr1_1:18484493-18484512 | Msa0012300:CDS | 50.0% | |
| !! | ATCGAGAGCATCCCTACTGA+AGG | - | chr1_1:18484507-18484526 | None:intergenic | 50.0% |
| TTCAGTAGGGATGCTCTCGA+TGG | + | chr1_1:18484506-18484525 | Msa0012300:CDS | 50.0% | |
| ACTTGTCGATAAGCACGACC+CGG | + | chr1_1:18484598-18484617 | Msa0012300:CDS | 50.0% | |
| GTATGTGGCGTTTATCTCCC+GGG | - | chr1_1:18484619-18484638 | None:intergenic | 50.0% | |
| GTACAAGTCTCCCACTCACT+AGG | - | chr1_1:18484961-18484980 | None:intergenic | 50.0% | |
| GTTCAAAGTCAGATGGGTGC+AGG | + | chr1_1:18485013-18485032 | Msa0012300:CDS | 50.0% | |
| GGATGTGACAGAGGCTTACT+AGG | + | chr1_1:18485076-18485095 | Msa0012300:CDS | 50.0% | |
| GCCACTTGTCAATGCAAGGT+AGG | - | chr1_1:18485252-18485271 | None:intergenic | 50.0% | |
| GACAAGTGGCTCATCAAGCA+TGG | + | chr1_1:18485262-18485281 | Msa0012300:CDS | 50.0% | |
| TTCACTCAATGGGATCCAGG+AGG | + | chr1_1:18485613-18485632 | Msa0012300:intron | 50.0% | |
| TCACTCAATGGGATCCAGGA+GGG | + | chr1_1:18485614-18485633 | Msa0012300:intron | 50.0% | |
| GAGGGTGGTCTCTTGTTCAT+TGG | + | chr1_1:18485632-18485651 | Msa0012300:intron | 50.0% | |
| GGTGGTCTCTTGTTCATTGG+AGG | + | chr1_1:18485635-18485654 | Msa0012300:intron | 50.0% | |
| TGGAAGAGACTGATGCAGGA+GGG | + | chr1_1:18485719-18485738 | Msa0012300:intron | 50.0% | |
| TGACGCAGTACGGAAGCTTA+GGG | - | chr1_1:18486050-18486069 | None:intergenic | 50.0% | |
| TTGACGCAGTACGGAAGCTT+AGG | - | chr1_1:18486051-18486070 | None:intergenic | 50.0% | |
| GCTTCCGTACTGCGTCAATA+TGG | + | chr1_1:18486053-18486072 | Msa0012300:intron | 50.0% | |
| AAAAGCAGTCCAGGTTCAGC+AGG | + | chr1_1:18484026-18484045 | Msa0012300:CDS | 50.0% | |
| CTACAAGAACCTGCTGAACC+TGG | - | chr1_1:18484038-18484057 | None:intergenic | 50.0% | |
| GGTTCAGCAGGTTCTTGTAG+TGG | + | chr1_1:18484038-18484057 | Msa0012300:CDS | 50.0% | |
| TGAAGAACTCCATGTTCCGG+AGG | + | chr1_1:18484283-18484302 | Msa0012300:CDS | 50.0% | |
| GATTGTGCTGAACACGGTCA+TGG | + | chr1_1:18484442-18484461 | Msa0012300:CDS | 50.0% | |
| TGAACACGGTCATGGCTGAA+AGG | + | chr1_1:18484450-18484469 | Msa0012300:CDS | 50.0% | |
| TCGGTTCAGCTACCTTCAGT+AGG | + | chr1_1:18484492-18484511 | Msa0012300:CDS | 50.0% | |
| CGGTTCAGCTACCTTCAGTA+GGG | + | chr1_1:18484493-18484512 | Msa0012300:CDS | 50.0% | |
| !! | ATCGAGAGCATCCCTACTGA+AGG | - | chr1_1:18484507-18484526 | None:intergenic | 50.0% |
| TTCAGTAGGGATGCTCTCGA+TGG | + | chr1_1:18484506-18484525 | Msa0012300:CDS | 50.0% | |
| ACTTGTCGATAAGCACGACC+CGG | + | chr1_1:18484598-18484617 | Msa0012300:CDS | 50.0% | |
| GTATGTGGCGTTTATCTCCC+GGG | - | chr1_1:18484619-18484638 | None:intergenic | 50.0% | |
| GTACAAGTCTCCCACTCACT+AGG | - | chr1_1:18484961-18484980 | None:intergenic | 50.0% | |
| GTTCAAAGTCAGATGGGTGC+AGG | + | chr1_1:18485013-18485032 | Msa0012300:CDS | 50.0% | |
| GGATGTGACAGAGGCTTACT+AGG | + | chr1_1:18485076-18485095 | Msa0012300:CDS | 50.0% | |
| GCCACTTGTCAATGCAAGGT+AGG | - | chr1_1:18485252-18485271 | None:intergenic | 50.0% | |
| GACAAGTGGCTCATCAAGCA+TGG | + | chr1_1:18485262-18485281 | Msa0012300:CDS | 50.0% | |
| TTCACTCAATGGGATCCAGG+AGG | + | chr1_1:18485613-18485632 | Msa0012300:intron | 50.0% | |
| TCACTCAATGGGATCCAGGA+GGG | + | chr1_1:18485614-18485633 | Msa0012300:intron | 50.0% | |
| GAGGGTGGTCTCTTGTTCAT+TGG | + | chr1_1:18485632-18485651 | Msa0012300:intron | 50.0% | |
| GGTGGTCTCTTGTTCATTGG+AGG | + | chr1_1:18485635-18485654 | Msa0012300:intron | 50.0% | |
| TGGAAGAGACTGATGCAGGA+GGG | + | chr1_1:18485719-18485738 | Msa0012300:intron | 50.0% | |
| TGACGCAGTACGGAAGCTTA+GGG | - | chr1_1:18486050-18486069 | None:intergenic | 50.0% | |
| TTGACGCAGTACGGAAGCTT+AGG | - | chr1_1:18486051-18486070 | None:intergenic | 50.0% | |
| GCTTCCGTACTGCGTCAATA+TGG | + | chr1_1:18486053-18486072 | Msa0012300:intron | 50.0% | |
| ! | GCTTCTTTCTCGGCACTGAG+GGG | - | chr1_1:18483975-18483994 | None:intergenic | 55.0% |
| ! | GGCTTCTTTCTCGGCACTGA+GGG | - | chr1_1:18483976-18483995 | None:intergenic | 55.0% |
| TGGCTTCTTTCTCGGCACTG+AGG | - | chr1_1:18483977-18483996 | None:intergenic | 55.0% | |
| CTTGTCGATAAGCACGACCC+GGG | + | chr1_1:18484599-18484618 | Msa0012300:CDS | 55.0% | |
| TGAACAAGAGACCACCCTCC+TGG | - | chr1_1:18485631-18485650 | None:intergenic | 55.0% | |
| CTCGAGGTCGAGTTCTTCAG+AGG | + | chr1_1:18485696-18485715 | Msa0012300:intron | 55.0% | |
| GAGGTCGAGTTCTTCAGAGG+TGG | + | chr1_1:18485699-18485718 | Msa0012300:intron | 55.0% | |
| GAGGTGGAAGAGACTGATGC+AGG | + | chr1_1:18485715-18485734 | Msa0012300:intron | 55.0% | |
| GTGGAAGAGACTGATGCAGG+AGG | + | chr1_1:18485718-18485737 | Msa0012300:intron | 55.0% | |
| ! | GCTTCTTTCTCGGCACTGAG+GGG | - | chr1_1:18483975-18483994 | None:intergenic | 55.0% |
| ! | GGCTTCTTTCTCGGCACTGA+GGG | - | chr1_1:18483976-18483995 | None:intergenic | 55.0% |
| TGGCTTCTTTCTCGGCACTG+AGG | - | chr1_1:18483977-18483996 | None:intergenic | 55.0% | |
| CTTGTCGATAAGCACGACCC+GGG | + | chr1_1:18484599-18484618 | Msa0012300:CDS | 55.0% | |
| TGAACAAGAGACCACCCTCC+TGG | - | chr1_1:18485631-18485650 | None:intergenic | 55.0% | |
| CTCGAGGTCGAGTTCTTCAG+AGG | + | chr1_1:18485696-18485715 | Msa0012300:intron | 55.0% | |
| GAGGTCGAGTTCTTCAGAGG+TGG | + | chr1_1:18485699-18485718 | Msa0012300:intron | 55.0% | |
| GAGGTGGAAGAGACTGATGC+AGG | + | chr1_1:18485715-18485734 | Msa0012300:intron | 55.0% | |
| GTGGAAGAGACTGATGCAGG+AGG | + | chr1_1:18485718-18485737 | Msa0012300:intron | 55.0% | |
| TCTCCATCTGTGGCAGCCTC+CGG | - | chr1_1:18484302-18484321 | None:intergenic | 60.0% | |
| CTCAATGGGATCCAGGAGGG+TGG | + | chr1_1:18485617-18485636 | Msa0012300:intron | 60.0% | |
| TCTCCATCTGTGGCAGCCTC+CGG | - | chr1_1:18484302-18484321 | None:intergenic | 60.0% | |
| CTCAATGGGATCCAGGAGGG+TGG | + | chr1_1:18485617-18485636 | Msa0012300:intron | 60.0% | |
| CTGTGGCAGCCTCCGGAACA+TGG | - | chr1_1:18484295-18484314 | None:intergenic | 65.0% | |
| GTTCCGGAGGCTGCCACAGA+TGG | + | chr1_1:18484296-18484315 | Msa0012300:CDS | 65.0% | |
| GGAGGCTGCCACAGATGGAG+AGG | + | chr1_1:18484301-18484320 | Msa0012300:CDS | 65.0% | |
| GTTGCTGCAGCAGCTCACGC+CGG | + | chr1_1:18486128-18486147 | Msa0012300:intron | 65.0% | |
| TTGCTGCAGCAGCTCACGCC+GGG | + | chr1_1:18486129-18486148 | Msa0012300:intron | 65.0% | |
| CTGTGGCAGCCTCCGGAACA+TGG | - | chr1_1:18484295-18484314 | None:intergenic | 65.0% | |
| GTTCCGGAGGCTGCCACAGA+TGG | + | chr1_1:18484296-18484315 | Msa0012300:CDS | 65.0% | |
| GGAGGCTGCCACAGATGGAG+AGG | + | chr1_1:18484301-18484320 | Msa0012300:CDS | 65.0% | |
| GTTGCTGCAGCAGCTCACGC+CGG | + | chr1_1:18486128-18486147 | Msa0012300:intron | 65.0% | |
| TTGCTGCAGCAGCTCACGCC+GGG | + | chr1_1:18486129-18486148 | Msa0012300:intron | 65.0% | |
| TGCTGCAGCAGCTCACGCCG+GGG | + | chr1_1:18486130-18486149 | Msa0012300:intron | 70.0% | |
| TGCTGCAGCAGCTCACGCCG+GGG | + | chr1_1:18486130-18486149 | Msa0012300:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 18483957 | 18486157 | 18483957 | ID=Msa0012300;Name=Msa0012300 |
| chr1_1 | mRNA | 18483957 | 18486157 | 18483957 | ID=Msa0012300-mRNA-1;Parent=Msa0012300;Name=Msa0012300-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0|0|0.5|0|0|2|0|505 |
| chr1_1 | exon | 18483957 | 18485454 | 18483957 | ID=Msa0012300-mRNA-1:exon:6862;Parent=Msa0012300-mRNA-1 |
| chr1_1 | exon | 18486138 | 18486157 | 18486138 | ID=Msa0012300-mRNA-1:exon:6863;Parent=Msa0012300-mRNA-1 |
| chr1_1 | CDS | 18483957 | 18485454 | 18483957 | ID=Msa0012300-mRNA-1:cds;Parent=Msa0012300-mRNA-1 |
| chr1_1 | CDS | 18486138 | 18486157 | 18486138 | ID=Msa0012300-mRNA-1:cds;Parent=Msa0012300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
