Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0012660 | sp|Q1G3Q4|RITF1_ARATH | 41.667 | 132 | 70 | 4 | 10 | 139 | 5 | 131 | 4.01e-21 | 90.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0012660 | TF | PLATZ |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0012660 | MtrunA17_Chr1g0161601 | 84.259 | 108 | 16 | 1 | 1 | 108 | 38 | 144 | 3.08e-62 | 189 |
| Msa0012660 | MtrunA17_Chr8g0392151 | 42.544 | 228 | 84 | 3 | 12 | 192 | 14 | 241 | 3.95e-56 | 177 |
| Msa0012660 | MtrunA17_Chr7g0230511 | 42.029 | 138 | 72 | 4 | 5 | 140 | 3 | 134 | 5.07e-27 | 102 |
| Msa0012660 | MtrunA17_Chr2g0297251 | 36.250 | 160 | 92 | 5 | 10 | 164 | 36 | 190 | 3.33e-21 | 87.8 |
| Msa0012660 | MtrunA17_Chr4g0065041 | 39.394 | 132 | 73 | 4 | 10 | 139 | 7 | 133 | 2.76e-20 | 85.1 |
| Msa0012660 | MtrunA17_Chr1g0179781 | 34.591 | 159 | 88 | 8 | 13 | 164 | 9 | 158 | 4.65e-19 | 80.9 |
| Msa0012660 | MtrunA17_Chr7g0265291 | 38.346 | 133 | 71 | 6 | 13 | 139 | 9 | 136 | 6.08e-18 | 78.2 |
| Msa0012660 | MtrunA17_Chr4g0040071 | 35.556 | 135 | 71 | 6 | 13 | 140 | 17 | 142 | 5.46e-16 | 73.2 |
| Msa0012660 | MtrunA17_Chr5g0395181 | 33.708 | 178 | 100 | 8 | 13 | 183 | 23 | 189 | 5.47e-16 | 73.2 |
| Msa0012660 | MtrunA17_Chr8g0366581 | 34.615 | 156 | 81 | 8 | 13 | 160 | 35 | 177 | 1.36e-15 | 72.4 |
| Msa0012660 | MtrunA17_Chr5g0411151 | 31.429 | 175 | 99 | 8 | 13 | 180 | 37 | 197 | 1.88e-14 | 69.3 |
| Msa0012660 | MtrunA17_Chr5g0434331 | 31.073 | 177 | 102 | 5 | 13 | 186 | 45 | 204 | 2.18e-14 | 68.6 |
| Msa0012660 | MtrunA17_Chr8g0386511 | 29.940 | 167 | 78 | 5 | 38 | 186 | 6 | 151 | 5.27e-14 | 66.6 |
| Msa0012660 | MtrunA17_Chr2g0320561 | 34.783 | 138 | 80 | 6 | 13 | 141 | 6 | 142 | 2.83e-13 | 66.2 |
| Msa0012660 | MtrunA17_Chr2g0320551 | 34.058 | 138 | 81 | 6 | 13 | 141 | 6 | 142 | 1.20e-11 | 60.5 |
| Msa0012660 | MtrunA17_Chr4g0020811 | 33.103 | 145 | 69 | 7 | 13 | 139 | 8 | 142 | 3.46e-11 | 58.9 |
| Msa0012660 | MtrunA17_Chr2g0308401 | 33.103 | 145 | 69 | 7 | 13 | 139 | 6 | 140 | 3.77e-11 | 58.9 |
| Msa0012660 | MtrunA17_Chr2g0320521 | 33.824 | 136 | 80 | 6 | 13 | 139 | 8 | 142 | 5.90e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0012660 | AT2G01818.1 | 43.571 | 140 | 70 | 5 | 9 | 140 | 9 | 147 | 9.80e-29 | 107 |
| Msa0012660 | AT3G60670.1 | 41.538 | 130 | 69 | 4 | 13 | 140 | 9 | 133 | 3.46e-24 | 95.9 |
| Msa0012660 | AT2G12646.3 | 41.667 | 132 | 70 | 4 | 10 | 139 | 2 | 128 | 3.52e-22 | 90.9 |
| Msa0012660 | AT2G12646.1 | 41.667 | 132 | 70 | 4 | 10 | 139 | 5 | 131 | 4.08e-22 | 90.5 |
| Msa0012660 | AT2G12646.2 | 41.667 | 132 | 70 | 4 | 10 | 139 | 5 | 131 | 4.08e-22 | 90.5 |
| Msa0012660 | AT1G31040.1 | 36.364 | 132 | 76 | 4 | 10 | 139 | 18 | 143 | 1.90e-20 | 85.9 |
| Msa0012660 | AT4G17900.2 | 31.522 | 184 | 108 | 7 | 13 | 188 | 22 | 195 | 3.93e-17 | 76.6 |
| Msa0012660 | AT4G17900.1 | 31.522 | 184 | 108 | 7 | 13 | 188 | 36 | 209 | 4.55e-17 | 76.6 |
| Msa0012660 | AT1G21000.1 | 38.806 | 134 | 66 | 6 | 13 | 139 | 18 | 142 | 2.16e-16 | 75.1 |
| Msa0012660 | AT1G21000.2 | 38.806 | 134 | 66 | 6 | 13 | 139 | 15 | 139 | 2.18e-16 | 75.1 |
| Msa0012660 | AT5G46710.3 | 30.303 | 198 | 110 | 6 | 13 | 186 | 14 | 207 | 9.59e-16 | 72.8 |
| Msa0012660 | AT5G46710.1 | 30.303 | 198 | 110 | 6 | 13 | 186 | 30 | 223 | 1.53e-15 | 72.4 |
| Msa0012660 | AT1G76590.1 | 37.313 | 134 | 68 | 6 | 13 | 139 | 20 | 144 | 2.31e-15 | 72.4 |
| Msa0012660 | AT1G43000.2 | 35.385 | 130 | 76 | 5 | 13 | 139 | 18 | 142 | 3.18e-15 | 71.6 |
| Msa0012660 | AT1G43000.1 | 35.385 | 130 | 76 | 5 | 13 | 139 | 11 | 135 | 3.43e-15 | 71.2 |
| Msa0012660 | AT2G27930.1 | 33.824 | 136 | 80 | 6 | 13 | 139 | 6 | 140 | 6.02e-15 | 70.1 |
| Msa0012660 | AT2G27930.4 | 33.824 | 136 | 80 | 6 | 13 | 139 | 6 | 140 | 6.02e-15 | 70.1 |
| Msa0012660 | AT2G27930.3 | 32.639 | 144 | 87 | 6 | 13 | 147 | 6 | 148 | 6.35e-15 | 69.7 |
| Msa0012660 | AT2G27930.2 | 32.639 | 144 | 87 | 6 | 13 | 147 | 6 | 148 | 6.35e-15 | 69.7 |
| Msa0012660 | AT5G46710.2 | 35.606 | 132 | 78 | 4 | 13 | 141 | 30 | 157 | 4.56e-14 | 67.4 |
| Msa0012660 | AT1G32700.1 | 34.351 | 131 | 78 | 5 | 13 | 140 | 14 | 139 | 7.13e-14 | 67.8 |
| Msa0012660 | AT2G01818.2 | 41.975 | 81 | 44 | 2 | 62 | 140 | 4 | 83 | 7.18e-12 | 61.2 |
Find 23 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGACTCAGCCTCTGAATTT+TGG | 0.202823 | 1_1:-19076586 | None:intergenic |
| TACCAAATGGAAAAGAAGAT+TGG | 0.357613 | 1_1:+19075034 | Msa0012660:CDS |
| TGTTGTTACCTTGCATTTGA+TGG | 0.360512 | 1_1:-19076136 | None:intergenic |
| TGTCTTTGCTACTGCTAGTC+GGG | 0.379634 | 1_1:-19076034 | None:intergenic |
| ACCCTTTCAACAGATTCATT+TGG | 0.404698 | 1_1:-19076626 | None:intergenic |
| TAGATCACAATTGAGGAGCT+TGG | 0.458055 | 1_1:+19076545 | Msa0012660:intron |
| ATGTCTTTGCTACTGCTAGT+CGG | 0.459833 | 1_1:-19076035 | None:intergenic |
| CAGCTTCTGTAGGTATGATA+AGG | 0.487953 | 1_1:+19075149 | Msa0012660:CDS |
| AAACTAGAGATAGATCTCAT+AGG | 0.499860 | 1_1:-19076680 | None:intergenic |
| GTGAAGCGTAGTTTACCAAA+TGG | 0.503152 | 1_1:+19075021 | Msa0012660:CDS |
| ATCTCATTCACTTCATCGAA+AGG | 0.526413 | 1_1:+19075173 | Msa0012660:CDS |
| AACCAAATGAATCTGTTGAA+AGG | 0.544922 | 1_1:+19076624 | Msa0012660:CDS |
| ACCAAATGAATCTGTTGAAA+GGG | 0.545715 | 1_1:+19076625 | Msa0012660:CDS |
| AGCAATCAAAATACTTGAGT+AGG | 0.578161 | 1_1:-19075242 | None:intergenic |
| GTATTGTTAGATCACAATTG+AGG | 0.590386 | 1_1:+19076538 | Msa0012660:intron |
| ATTGTGGAATCAGCTTCTGT+AGG | 0.601514 | 1_1:+19075139 | Msa0012660:CDS |
| ACATCTCAAAAGCAAGCTGG+TGG | 0.603751 | 1_1:+19076060 | Msa0012660:CDS |
| TCAACATCTCAAAAGCAAGC+TGG | 0.604147 | 1_1:+19076057 | Msa0012660:CDS |
| GTCTTTGCTACTGCTAGTCG+GGG | 0.609471 | 1_1:-19076033 | None:intergenic |
| ATTCTGTTCCATCAAATGCA+AGG | 0.622156 | 1_1:+19076128 | Msa0012660:CDS |
| TGAATCTCAGAAAACGTCCA+AGG | 0.636921 | 1_1:+19076648 | Msa0012660:CDS |
| AAATGATCACCAAAATTCAG+AGG | 0.644619 | 1_1:+19076577 | Msa0012660:CDS |
| GGTGGAATTTGTGAAGAATG+TGG | 0.715683 | 1_1:+19076078 | Msa0012660:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTTATATATTCATCAA+TGG | - | chr1_1:19075629-19075648 | None:intergenic | 10.0% |
| !!! | GAATATATAAATTTTTTAAG+TGG | + | chr1_1:19075634-19075653 | Msa0012660:intron | 10.0% |
| !!! | TTTTTTTTTCAAATTATTAG+CGG | - | chr1_1:19075779-19075798 | None:intergenic | 10.0% |
| !! | ACTTATAAATATTATACTTT+CGG | + | chr1_1:19076257-19076276 | Msa0012660:intron | 10.0% |
| !! | AAAATTTATATATTCATCAA+TGG | - | chr1_1:19075629-19075648 | None:intergenic | 10.0% |
| !!! | GAATATATAAATTTTTTAAG+TGG | + | chr1_1:19075634-19075653 | Msa0012660:intron | 10.0% |
| !!! | TTTTTTTTTCAAATTATTAG+CGG | - | chr1_1:19075779-19075798 | None:intergenic | 10.0% |
| !! | ACTTATAAATATTATACTTT+CGG | + | chr1_1:19076257-19076276 | Msa0012660:intron | 10.0% |
| !! | TCTATTTATATGAGAAAATT+GGG | - | chr1_1:19075405-19075424 | None:intergenic | 15.0% |
| !! | TTCTATTTATATGAGAAAAT+TGG | - | chr1_1:19075406-19075425 | None:intergenic | 15.0% |
| !!! | CATATATACTTTTGTTTTTT+TGG | + | chr1_1:19076160-19076179 | Msa0012660:intron | 15.0% |
| !!! | TCAATATAAATAAATTTTGC+AGG | - | chr1_1:19076356-19076375 | None:intergenic | 15.0% |
| !!! | TAATTAACACTTTTATGTTT+TGG | - | chr1_1:19076419-19076438 | None:intergenic | 15.0% |
| !! | TTCACATTAAATTAAAATCT+AGG | - | chr1_1:19076477-19076496 | None:intergenic | 15.0% |
| !! | TCTATTTATATGAGAAAATT+GGG | - | chr1_1:19075405-19075424 | None:intergenic | 15.0% |
| !! | TTCTATTTATATGAGAAAAT+TGG | - | chr1_1:19075406-19075425 | None:intergenic | 15.0% |
| !!! | CATATATACTTTTGTTTTTT+TGG | + | chr1_1:19076160-19076179 | Msa0012660:intron | 15.0% |
| !!! | TCAATATAAATAAATTTTGC+AGG | - | chr1_1:19076356-19076375 | None:intergenic | 15.0% |
| !!! | TAATTAACACTTTTATGTTT+TGG | - | chr1_1:19076419-19076438 | None:intergenic | 15.0% |
| !! | TTCACATTAAATTAAAATCT+AGG | - | chr1_1:19076477-19076496 | None:intergenic | 15.0% |
| !!! | TTTTCTCATATAAATAGAAC+CGG | + | chr1_1:19075407-19075426 | Msa0012660:intron | 20.0% |
| !! | AACAACATATATACTTTAGT+AGG | + | chr1_1:19076187-19076206 | Msa0012660:intron | 20.0% |
| !!! | TATGCTTTTAAGTAGATAAA+AGG | + | chr1_1:19076216-19076235 | Msa0012660:intron | 20.0% |
| !!! | ACATAAAAGTGTTAATTAGT+AGG | + | chr1_1:19076421-19076440 | Msa0012660:intron | 20.0% |
| !!! | CATAAAAGTGTTAATTAGTA+GGG | + | chr1_1:19076422-19076441 | Msa0012660:intron | 20.0% |
| !!! | TTTTCTCATATAAATAGAAC+CGG | + | chr1_1:19075407-19075426 | Msa0012660:intron | 20.0% |
| !! | AACAACATATATACTTTAGT+AGG | + | chr1_1:19076187-19076206 | Msa0012660:intron | 20.0% |
| !!! | TATGCTTTTAAGTAGATAAA+AGG | + | chr1_1:19076216-19076235 | Msa0012660:intron | 20.0% |
| !!! | ACATAAAAGTGTTAATTAGT+AGG | + | chr1_1:19076421-19076440 | Msa0012660:intron | 20.0% |
| !!! | CATAAAAGTGTTAATTAGTA+GGG | + | chr1_1:19076422-19076441 | Msa0012660:intron | 20.0% |
| !! | TCTCATTAAACTTTTCTTTG+TGG | - | chr1_1:19075101-19075120 | None:intergenic | 25.0% |
| !!! | TTTTGATTGCTCATATATTC+AGG | + | chr1_1:19075254-19075273 | Msa0012660:CDS | 25.0% |
| !!! | TATTGATCTAATTTGCTCTT+AGG | + | chr1_1:19075498-19075517 | Msa0012660:intron | 25.0% |
| !! | GAATTGATTCACTCAATAAA+TGG | - | chr1_1:19075524-19075543 | None:intergenic | 25.0% |
| ! | GTTTCTTAATTGTAATCTGA+TGG | + | chr1_1:19075545-19075564 | Msa0012660:intron | 25.0% |
| !! | AAATCCATATGTTACTTCTA+CGG | - | chr1_1:19075915-19075934 | None:intergenic | 25.0% |
| ! | TTGAAACTGATCAAAATGTA+AGG | + | chr1_1:19076372-19076391 | Msa0012660:intron | 25.0% |
| ! | AGGACTACAACAAAATTATA+AGG | + | chr1_1:19076392-19076411 | Msa0012660:intron | 25.0% |
| !! | TCTCATTAAACTTTTCTTTG+TGG | - | chr1_1:19075101-19075120 | None:intergenic | 25.0% |
| !!! | TTTTGATTGCTCATATATTC+AGG | + | chr1_1:19075254-19075273 | Msa0012660:CDS | 25.0% |
| !!! | TATTGATCTAATTTGCTCTT+AGG | + | chr1_1:19075498-19075517 | Msa0012660:intron | 25.0% |
| !! | GAATTGATTCACTCAATAAA+TGG | - | chr1_1:19075524-19075543 | None:intergenic | 25.0% |
| ! | GTTTCTTAATTGTAATCTGA+TGG | + | chr1_1:19075545-19075564 | Msa0012660:intron | 25.0% |
| !! | AAATCCATATGTTACTTCTA+CGG | - | chr1_1:19075915-19075934 | None:intergenic | 25.0% |
| ! | TTGAAACTGATCAAAATGTA+AGG | + | chr1_1:19076372-19076391 | Msa0012660:intron | 25.0% |
| ! | AGGACTACAACAAAATTATA+AGG | + | chr1_1:19076392-19076411 | Msa0012660:intron | 25.0% |
| TACCAAATGGAAAAGAAGAT+TGG | + | chr1_1:19075034-19075053 | Msa0012660:CDS | 30.0% | |
| ! | TTGATGCACTTTTGATAGAT+AGG | + | chr1_1:19075058-19075077 | Msa0012660:CDS | 30.0% |
| !! | TGAGAAGAATGTGTTTTGTT+TGG | + | chr1_1:19075116-19075135 | Msa0012660:CDS | 30.0% |
| !!! | AATGTGTTTTGTTTGGATTG+TGG | + | chr1_1:19075123-19075142 | Msa0012660:CDS | 30.0% |
| AGCAATCAAAATACTTGAGT+AGG | - | chr1_1:19075245-19075264 | None:intergenic | 30.0% | |
| ATGAAATCAATTACTACCTC+CGG | - | chr1_1:19075429-19075448 | None:intergenic | 30.0% | |
| GGATAGTTTATGCTACATTA+TGG | + | chr1_1:19075566-19075585 | Msa0012660:intron | 30.0% | |
| !!! | GATGGTTTTAAACACAAACA+TGG | + | chr1_1:19075717-19075736 | Msa0012660:intron | 30.0% |
| ! | TTCAAATTATTAGCGGATAC+CGG | - | chr1_1:19075772-19075791 | None:intergenic | 30.0% |
| ! | AATCCATATGTTACTTCTAC+GGG | - | chr1_1:19075914-19075933 | None:intergenic | 30.0% |
| CACGTTGTAAGTACAAATTT+AGG | - | chr1_1:19075960-19075979 | None:intergenic | 30.0% | |
| GTATTGTTAGATCACAATTG+AGG | + | chr1_1:19076538-19076557 | Msa0012660:intron | 30.0% | |
| !! | CTGAATTTTGGTGATCATTT+TGG | - | chr1_1:19076577-19076596 | None:intergenic | 30.0% |
| AAATGATCACCAAAATTCAG+AGG | + | chr1_1:19076577-19076596 | Msa0012660:CDS | 30.0% | |
| AACCAAATGAATCTGTTGAA+AGG | + | chr1_1:19076624-19076643 | Msa0012660:CDS | 30.0% | |
| ACCAAATGAATCTGTTGAAA+GGG | + | chr1_1:19076625-19076644 | Msa0012660:CDS | 30.0% | |
| AAACTAGAGATAGATCTCAT+AGG | - | chr1_1:19076683-19076702 | None:intergenic | 30.0% | |
| TACCAAATGGAAAAGAAGAT+TGG | + | chr1_1:19075034-19075053 | Msa0012660:CDS | 30.0% | |
| ! | TTGATGCACTTTTGATAGAT+AGG | + | chr1_1:19075058-19075077 | Msa0012660:CDS | 30.0% |
| !! | TGAGAAGAATGTGTTTTGTT+TGG | + | chr1_1:19075116-19075135 | Msa0012660:CDS | 30.0% |
| !!! | AATGTGTTTTGTTTGGATTG+TGG | + | chr1_1:19075123-19075142 | Msa0012660:CDS | 30.0% |
| AGCAATCAAAATACTTGAGT+AGG | - | chr1_1:19075245-19075264 | None:intergenic | 30.0% | |
| ATGAAATCAATTACTACCTC+CGG | - | chr1_1:19075429-19075448 | None:intergenic | 30.0% | |
| GGATAGTTTATGCTACATTA+TGG | + | chr1_1:19075566-19075585 | Msa0012660:intron | 30.0% | |
| !!! | GATGGTTTTAAACACAAACA+TGG | + | chr1_1:19075717-19075736 | Msa0012660:intron | 30.0% |
| ! | TTCAAATTATTAGCGGATAC+CGG | - | chr1_1:19075772-19075791 | None:intergenic | 30.0% |
| ! | AATCCATATGTTACTTCTAC+GGG | - | chr1_1:19075914-19075933 | None:intergenic | 30.0% |
| CACGTTGTAAGTACAAATTT+AGG | - | chr1_1:19075960-19075979 | None:intergenic | 30.0% | |
| GTATTGTTAGATCACAATTG+AGG | + | chr1_1:19076538-19076557 | Msa0012660:intron | 30.0% | |
| !! | CTGAATTTTGGTGATCATTT+TGG | - | chr1_1:19076577-19076596 | None:intergenic | 30.0% |
| AAATGATCACCAAAATTCAG+AGG | + | chr1_1:19076577-19076596 | Msa0012660:CDS | 30.0% | |
| AACCAAATGAATCTGTTGAA+AGG | + | chr1_1:19076624-19076643 | Msa0012660:CDS | 30.0% | |
| ACCAAATGAATCTGTTGAAA+GGG | + | chr1_1:19076625-19076644 | Msa0012660:CDS | 30.0% | |
| AAACTAGAGATAGATCTCAT+AGG | - | chr1_1:19076683-19076702 | None:intergenic | 30.0% | |
| ! | AGCCAATCTTCTTTTCCATT+TGG | - | chr1_1:19075039-19075058 | None:intergenic | 35.0% |
| ! | GCACTTTTGATAGATAGGTT+TGG | + | chr1_1:19075063-19075082 | Msa0012660:CDS | 35.0% |
| ATCTCATTCACTTCATCGAA+AGG | + | chr1_1:19075173-19075192 | Msa0012660:CDS | 35.0% | |
| TCTCATATAAATAGAACCGG+AGG | + | chr1_1:19075410-19075429 | Msa0012660:intron | 35.0% | |
| ! | TCCATTAGTCATAGTCTTGA+TGG | + | chr1_1:19075699-19075718 | Msa0012660:intron | 35.0% |
| ACCATCAAGACTATGACTAA+TGG | - | chr1_1:19075703-19075722 | None:intergenic | 35.0% | |
| GCACATACATTCCTTGAATT+AGG | - | chr1_1:19075879-19075898 | None:intergenic | 35.0% | |
| ATTCTGTTCCATCAAATGCA+AGG | + | chr1_1:19076128-19076147 | Msa0012660:CDS | 35.0% | |
| TGTTGTTACCTTGCATTTGA+TGG | - | chr1_1:19076139-19076158 | None:intergenic | 35.0% | |
| ACCCTTTCAACAGATTCATT+TGG | - | chr1_1:19076629-19076648 | None:intergenic | 35.0% | |
| ! | AGCCAATCTTCTTTTCCATT+TGG | - | chr1_1:19075039-19075058 | None:intergenic | 35.0% |
| ! | GCACTTTTGATAGATAGGTT+TGG | + | chr1_1:19075063-19075082 | Msa0012660:CDS | 35.0% |
| ATCTCATTCACTTCATCGAA+AGG | + | chr1_1:19075173-19075192 | Msa0012660:CDS | 35.0% | |
| TCTCATATAAATAGAACCGG+AGG | + | chr1_1:19075410-19075429 | Msa0012660:intron | 35.0% | |
| ! | TCCATTAGTCATAGTCTTGA+TGG | + | chr1_1:19075699-19075718 | Msa0012660:intron | 35.0% |
| ACCATCAAGACTATGACTAA+TGG | - | chr1_1:19075703-19075722 | None:intergenic | 35.0% | |
| GCACATACATTCCTTGAATT+AGG | - | chr1_1:19075879-19075898 | None:intergenic | 35.0% | |
| ATTCTGTTCCATCAAATGCA+AGG | + | chr1_1:19076128-19076147 | Msa0012660:CDS | 35.0% | |
| TGTTGTTACCTTGCATTTGA+TGG | - | chr1_1:19076139-19076158 | None:intergenic | 35.0% | |
| ACCCTTTCAACAGATTCATT+TGG | - | chr1_1:19076629-19076648 | None:intergenic | 35.0% | |
| GTGAAGCGTAGTTTACCAAA+TGG | + | chr1_1:19075021-19075040 | Msa0012660:CDS | 40.0% | |
| ATTGTGGAATCAGCTTCTGT+AGG | + | chr1_1:19075139-19075158 | Msa0012660:CDS | 40.0% | |
| CAGCTTCTGTAGGTATGATA+AGG | + | chr1_1:19075149-19075168 | Msa0012660:CDS | 40.0% | |
| TGTTGACCTAACTTTCTCTC+AGG | - | chr1_1:19075329-19075348 | None:intergenic | 40.0% | |
| CAACCCGTAGAAGTAACATA+TGG | + | chr1_1:19075908-19075927 | Msa0012660:intron | 40.0% | |
| ATGTCTTTGCTACTGCTAGT+CGG | - | chr1_1:19076038-19076057 | None:intergenic | 40.0% | |
| TCAACATCTCAAAAGCAAGC+TGG | + | chr1_1:19076057-19076076 | Msa0012660:CDS | 40.0% | |
| GGTGGAATTTGTGAAGAATG+TGG | + | chr1_1:19076078-19076097 | Msa0012660:CDS | 40.0% | |
| TAGATCACAATTGAGGAGCT+TGG | + | chr1_1:19076545-19076564 | Msa0012660:intron | 40.0% | |
| ! | ATGACTCAGCCTCTGAATTT+TGG | - | chr1_1:19076589-19076608 | None:intergenic | 40.0% |
| TGAATCTCAGAAAACGTCCA+AGG | + | chr1_1:19076648-19076667 | Msa0012660:CDS | 40.0% | |
| GTGAAGCGTAGTTTACCAAA+TGG | + | chr1_1:19075021-19075040 | Msa0012660:CDS | 40.0% | |
| ATTGTGGAATCAGCTTCTGT+AGG | + | chr1_1:19075139-19075158 | Msa0012660:CDS | 40.0% | |
| CAGCTTCTGTAGGTATGATA+AGG | + | chr1_1:19075149-19075168 | Msa0012660:CDS | 40.0% | |
| TGTTGACCTAACTTTCTCTC+AGG | - | chr1_1:19075329-19075348 | None:intergenic | 40.0% | |
| CAACCCGTAGAAGTAACATA+TGG | + | chr1_1:19075908-19075927 | Msa0012660:intron | 40.0% | |
| ATGTCTTTGCTACTGCTAGT+CGG | - | chr1_1:19076038-19076057 | None:intergenic | 40.0% | |
| TCAACATCTCAAAAGCAAGC+TGG | + | chr1_1:19076057-19076076 | Msa0012660:CDS | 40.0% | |
| GGTGGAATTTGTGAAGAATG+TGG | + | chr1_1:19076078-19076097 | Msa0012660:CDS | 40.0% | |
| TAGATCACAATTGAGGAGCT+TGG | + | chr1_1:19076545-19076564 | Msa0012660:intron | 40.0% | |
| ! | ATGACTCAGCCTCTGAATTT+TGG | - | chr1_1:19076589-19076608 | None:intergenic | 40.0% |
| TGAATCTCAGAAAACGTCCA+AGG | + | chr1_1:19076648-19076667 | Msa0012660:CDS | 40.0% | |
| TTGTTTACTACTCCCTCTGC+TGG | + | chr1_1:19075302-19075321 | Msa0012660:intron | 45.0% | |
| CAACAAGAACACTGACAAGC+CGG | + | chr1_1:19075750-19075769 | Msa0012660:intron | 45.0% | |
| TGTCTTTGCTACTGCTAGTC+GGG | - | chr1_1:19076037-19076056 | None:intergenic | 45.0% | |
| ACATCTCAAAAGCAAGCTGG+TGG | + | chr1_1:19076060-19076079 | Msa0012660:CDS | 45.0% | |
| !!! | CTCATAGGAGTGCTTTTCCT+TGG | - | chr1_1:19076668-19076687 | None:intergenic | 45.0% |
| TTGTTTACTACTCCCTCTGC+TGG | + | chr1_1:19075302-19075321 | Msa0012660:intron | 45.0% | |
| CAACAAGAACACTGACAAGC+CGG | + | chr1_1:19075750-19075769 | Msa0012660:intron | 45.0% | |
| TGTCTTTGCTACTGCTAGTC+GGG | - | chr1_1:19076037-19076056 | None:intergenic | 45.0% | |
| ACATCTCAAAAGCAAGCTGG+TGG | + | chr1_1:19076060-19076079 | Msa0012660:CDS | 45.0% | |
| !!! | CTCATAGGAGTGCTTTTCCT+TGG | - | chr1_1:19076668-19076687 | None:intergenic | 45.0% |
| !! | AATGATAAAAAATAATTATA+AGG | - | chr1_1:19076284-19076303 | None:intergenic | 5.0% |
| !! | AATGATAAAAAATAATTATA+AGG | - | chr1_1:19076284-19076303 | None:intergenic | 5.0% |
| TTTCTCTCAGGACCAGCAGA+GGG | - | chr1_1:19075317-19075336 | None:intergenic | 50.0% | |
| GCTGGTCCTGAGAGAAAGTT+AGG | + | chr1_1:19075320-19075339 | Msa0012660:intron | 50.0% | |
| ACACAACGCATGTCCGACAT+CGG | + | chr1_1:19075847-19075866 | Msa0012660:intron | 50.0% | |
| AATTAGGCGTGTCCCGATGT+CGG | - | chr1_1:19075863-19075882 | None:intergenic | 50.0% | |
| ATCGGGACACGCCTAATTCA+AGG | + | chr1_1:19075865-19075884 | Msa0012660:intron | 50.0% | |
| GTCTTTGCTACTGCTAGTCG+GGG | - | chr1_1:19076036-19076055 | None:intergenic | 50.0% | |
| TTTCTCTCAGGACCAGCAGA+GGG | - | chr1_1:19075317-19075336 | None:intergenic | 50.0% | |
| GCTGGTCCTGAGAGAAAGTT+AGG | + | chr1_1:19075320-19075339 | Msa0012660:intron | 50.0% | |
| ACACAACGCATGTCCGACAT+CGG | + | chr1_1:19075847-19075866 | Msa0012660:intron | 50.0% | |
| AATTAGGCGTGTCCCGATGT+CGG | - | chr1_1:19075863-19075882 | None:intergenic | 50.0% | |
| ATCGGGACACGCCTAATTCA+AGG | + | chr1_1:19075865-19075884 | Msa0012660:intron | 50.0% | |
| GTCTTTGCTACTGCTAGTCG+GGG | - | chr1_1:19076036-19076055 | None:intergenic | 50.0% | |
| CTTTCTCTCAGGACCAGCAG+AGG | - | chr1_1:19075318-19075337 | None:intergenic | 55.0% | |
| CACAACGCATGTCCGACATC+GGG | + | chr1_1:19075848-19075867 | Msa0012660:intron | 55.0% | |
| CTTTCTCTCAGGACCAGCAG+AGG | - | chr1_1:19075318-19075337 | None:intergenic | 55.0% | |
| CACAACGCATGTCCGACATC+GGG | + | chr1_1:19075848-19075867 | Msa0012660:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 19075018 | 19076718 | 19075018 | ID=Msa0012660;Name=Msa0012660 |
| chr1_1 | mRNA | 19075018 | 19076718 | 19075018 | ID=Msa0012660-mRNA-1;Parent=Msa0012660;Name=Msa0012660-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|3|0|194 |
| chr1_1 | exon | 19075018 | 19075275 | 19075018 | ID=Msa0012660-mRNA-1:exon:7003;Parent=Msa0012660-mRNA-1 |
| chr1_1 | exon | 19075994 | 19076149 | 19075994 | ID=Msa0012660-mRNA-1:exon:7004;Parent=Msa0012660-mRNA-1 |
| chr1_1 | exon | 19076548 | 19076718 | 19076548 | ID=Msa0012660-mRNA-1:exon:7005;Parent=Msa0012660-mRNA-1 |
| chr1_1 | CDS | 19075018 | 19075275 | 19075018 | ID=Msa0012660-mRNA-1:cds;Parent=Msa0012660-mRNA-1 |
| chr1_1 | CDS | 19075994 | 19076149 | 19075994 | ID=Msa0012660-mRNA-1:cds;Parent=Msa0012660-mRNA-1 |
| chr1_1 | CDS | 19076548 | 19076718 | 19076548 | ID=Msa0012660-mRNA-1:cds;Parent=Msa0012660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
