Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0012860 | XP_013466645.1 | 92.636 | 258 | 12 | 2 | 1 | 258 | 1 | 251 | 1.33e-173 | 488 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0012860 | sp|Q39263|ZFP4_ARATH | 41.758 | 182 | 81 | 6 | 98 | 258 | 83 | 260 | 3.45e-36 | 132 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0012860 | A0A072VGF6 | 92.636 | 258 | 12 | 2 | 1 | 258 | 1 | 251 | 6.37e-174 | 488 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0012860 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0012860 | MtrunA17_Chr1g0161901 | 92.636 | 258 | 12 | 2 | 1 | 258 | 1 | 251 | 1.23e-177 | 488 |
| Msa0012860 | MtrunA17_Chr8g0376021 | 51.751 | 257 | 84 | 8 | 2 | 258 | 1 | 217 | 5.95e-75 | 227 |
| Msa0012860 | MtrunA17_Chr3g0110091 | 40.157 | 254 | 134 | 6 | 5 | 258 | 3 | 238 | 1.16e-56 | 181 |
| Msa0012860 | MtrunA17_Chr5g0434121 | 43.609 | 266 | 105 | 11 | 6 | 258 | 4 | 237 | 5.19e-55 | 177 |
| Msa0012860 | MtrunA17_Chr2g0333741 | 66.234 | 77 | 21 | 2 | 98 | 169 | 81 | 157 | 3.12e-26 | 102 |
| Msa0012860 | MtrunA17_Chr1g0149811 | 38.356 | 146 | 71 | 2 | 43 | 169 | 35 | 180 | 1.72e-23 | 95.9 |
| Msa0012860 | MtrunA17_Chr4g0001081 | 58.108 | 74 | 19 | 3 | 98 | 169 | 67 | 130 | 6.56e-19 | 82.8 |
| Msa0012860 | MtrunA17_Chr1g0207691 | 38.889 | 126 | 59 | 4 | 98 | 219 | 64 | 175 | 1.13e-18 | 81.3 |
| Msa0012860 | MtrunA17_Chr3g0137111 | 43.103 | 116 | 45 | 5 | 69 | 169 | 49 | 158 | 3.59e-18 | 80.9 |
| Msa0012860 | MtrunA17_Chr4g0072571 | 52.632 | 76 | 32 | 2 | 98 | 171 | 45 | 118 | 4.34e-16 | 73.9 |
| Msa0012860 | MtrunA17_Chr4g0053691 | 36.364 | 143 | 66 | 7 | 90 | 229 | 57 | 177 | 7.50e-15 | 70.9 |
| Msa0012860 | MtrunA17_Chr7g0254221 | 52.830 | 53 | 23 | 2 | 82 | 134 | 19 | 69 | 1.06e-11 | 61.6 |
| Msa0012860 | MtrunA17_Chr7g0251581 | 69.697 | 33 | 10 | 0 | 98 | 130 | 39 | 71 | 2.16e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0012860 | AT1G66140.1 | 41.758 | 182 | 81 | 6 | 98 | 258 | 83 | 260 | 3.51e-37 | 132 |
| Msa0012860 | AT1G24625.1 | 39.207 | 227 | 95 | 10 | 39 | 258 | 19 | 209 | 2.59e-31 | 115 |
| Msa0012860 | AT1G80730.1 | 57.955 | 88 | 21 | 3 | 98 | 169 | 66 | 153 | 9.79e-24 | 96.3 |
| Msa0012860 | AT5G10970.1 | 56.579 | 76 | 29 | 2 | 97 | 169 | 101 | 175 | 1.75e-21 | 90.9 |
| Msa0012860 | AT5G25160.1 | 55.263 | 76 | 30 | 2 | 98 | 169 | 59 | 134 | 6.93e-21 | 88.6 |
| Msa0012860 | AT5G57520.1 | 51.515 | 66 | 32 | 0 | 98 | 163 | 50 | 115 | 1.65e-15 | 72.0 |
| Msa0012860 | AT5G14010.1 | 47.945 | 73 | 27 | 1 | 94 | 155 | 32 | 104 | 2.40e-15 | 72.0 |
| Msa0012860 | AT5G01860.1 | 55.814 | 43 | 19 | 0 | 95 | 137 | 62 | 104 | 4.20e-11 | 61.2 |
| Msa0012860 | AT3G58070.1 | 55.769 | 52 | 20 | 1 | 82 | 133 | 76 | 124 | 7.30e-11 | 61.2 |
Find 46 sgRNAs with CRISPR-Local
Find 100 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGCTTCCAAGTTCAAATT+TGG | 0.203450 | 1_1:-19798130 | None:intergenic |
| ATGAAGATGTCGGCGTATTT+TGG | 0.224650 | 1_1:+19798731 | Msa0012860:CDS |
| GACATCAGAATGCTCATAAA+AGG | 0.253478 | 1_1:+19798467 | Msa0012860:CDS |
| TTAGCTTCTTTACCTCTTCA+TGG | 0.299313 | 1_1:+19798550 | Msa0012860:CDS |
| AGAAGTTGTGGCACTGTCTT+TGG | 0.311560 | 1_1:-19798221 | None:intergenic |
| ACGATGATGGCATGTGGTTT+TGG | 0.333669 | 1_1:-19798621 | None:intergenic |
| TTTATCTGCCTGAAACTTCC+AGG | 0.347691 | 1_1:-19798754 | None:intergenic |
| AAATTCGAGAAAGATTGTTT+TGG | 0.369690 | 1_1:+19798685 | Msa0012860:CDS |
| CATATCCTGATCTTACTTTG+AGG | 0.427108 | 1_1:+19798866 | Msa0012860:CDS |
| TCCGAGCGATGAAGATTTGA+AGG | 0.428555 | 1_1:+19798309 | Msa0012860:CDS |
| TCCTTCAAATCTTCATCGCT+CGG | 0.432671 | 1_1:-19798310 | None:intergenic |
| AACTTCTTCTTGTCTTACTA+AGG | 0.451364 | 1_1:+19798237 | Msa0012860:CDS |
| GAATACTCCAAATTTGAACT+TGG | 0.473476 | 1_1:+19798123 | Msa0012860:CDS |
| TCGGATTGAAGTTGAGAGTC+AGG | 0.475494 | 1_1:-19798291 | None:intergenic |
| TTCTTTAGCTCACAAGCGTT+AGG | 0.479990 | 1_1:+19798442 | Msa0012860:CDS |
| CAAAGCGCGCTATGCGAGTA+GGG | 0.487145 | 1_1:+19798503 | Msa0012860:CDS |
| ACTAAGGCAGACATTAATCC+AGG | 0.488717 | 1_1:+19798253 | Msa0012860:CDS |
| AGCTAAGCTTGTATACCCTT+CGG | 0.491197 | 1_1:-19798533 | None:intergenic |
| GTAGTAGATGTTTGTTGAGG+AGG | 0.505399 | 1_1:-19798844 | None:intergenic |
| TAAAGCCTCAAAGTAAGATC+AGG | 0.515851 | 1_1:-19798871 | None:intergenic |
| TCTCTTGTAATTATTGTAGG+AGG | 0.522769 | 1_1:+19798416 | Msa0012860:CDS |
| ATCAGCATTGACGACGATGA+TGG | 0.524569 | 1_1:-19798634 | None:intergenic |
| TGATTCTTGTAAGTATATGT+TGG | 0.525252 | 1_1:-19798185 | None:intergenic |
| GAGAAAACTCTATGAATCGC+TGG | 0.540223 | 1_1:-19798397 | None:intergenic |
| GCAAAGCGCGCTATGCGAGT+AGG | 0.540707 | 1_1:+19798502 | Msa0012860:CDS |
| AGGTCAAGGGAAATAGAACC+TGG | 0.542650 | 1_1:-19798271 | None:intergenic |
| ACATCAGAATGCTCATAAAA+GGG | 0.543025 | 1_1:+19798468 | Msa0012860:CDS |
| AGTATATGTTGGAACCTACT+TGG | 0.544787 | 1_1:-19798174 | None:intergenic |
| TCTTTCTCGAATTTCGCTGT+AGG | 0.553624 | 1_1:-19798676 | None:intergenic |
| AACTCTATGAATCGCTGGTG+CGG | 0.556385 | 1_1:-19798392 | None:intergenic |
| CATCGTCGTCAATGCTGATG+AGG | 0.567172 | 1_1:+19798638 | Msa0012860:CDS |
| TATGTAGTAGATGTTTGTTG+AGG | 0.576983 | 1_1:-19798847 | None:intergenic |
| TTTAGCTCACAAGCGTTAGG+TGG | 0.582305 | 1_1:+19798445 | Msa0012860:CDS |
| TGAAGTTGAGAGTCAGGTCA+AGG | 0.584371 | 1_1:-19798285 | None:intergenic |
| TTAGAAGTAAGCAGCCAAGT+AGG | 0.598009 | 1_1:+19798160 | Msa0012860:CDS |
| CGAGTAGGGATGTTTACCGA+AGG | 0.601367 | 1_1:+19798517 | Msa0012860:CDS |
| ATCGTCGTCAATGCTGATGA+GGG | 0.604838 | 1_1:+19798639 | Msa0012860:CDS |
| GACACTAACAGTGAAGTACT+AGG | 0.613028 | 1_1:+19798340 | Msa0012860:CDS |
| AAAGAAGAAGAACCATGAAG+AGG | 0.622542 | 1_1:-19798562 | None:intergenic |
| GAAGTTGAGAGTCAGGTCAA+GGG | 0.634039 | 1_1:-19798284 | None:intergenic |
| TTTATGCATAATGAAGATGT+CGG | 0.651635 | 1_1:+19798721 | Msa0012860:CDS |
| AGTAAGACAAGAAGAAGTTG+TGG | 0.657771 | 1_1:-19798233 | None:intergenic |
| GAGTAGGGATGTTTACCGAA+GGG | 0.666419 | 1_1:+19798518 | Msa0012860:CDS |
| TCTTCATTATGCATAAACAT+CGG | 0.674163 | 1_1:-19798715 | None:intergenic |
| TCATAAAAGGGAGAGAACGA+TGG | 0.677286 | 1_1:+19798480 | Msa0012860:CDS |
| TTGACGACGATGATGGCATG+TGG | 0.711687 | 1_1:-19798627 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTCTCTTGTAATTATTGT+AGG | + | chr1_1:19798413-19798432 | Msa0012860:CDS | 20.0% |
| !!! | TTTTCTCTTGTAATTATTGT+AGG | + | chr1_1:19798413-19798432 | Msa0012860:CDS | 20.0% |
| ! | TGATTCTTGTAAGTATATGT+TGG | - | chr1_1:19798188-19798207 | None:intergenic | 25.0% |
| !! | AAATTCGAGAAAGATTGTTT+TGG | + | chr1_1:19798685-19798704 | Msa0012860:CDS | 25.0% |
| ! | TCTTCATTATGCATAAACAT+CGG | - | chr1_1:19798718-19798737 | None:intergenic | 25.0% |
| ! | TTTATGCATAATGAAGATGT+CGG | + | chr1_1:19798721-19798740 | Msa0012860:CDS | 25.0% |
| ! | TGATTCTTGTAAGTATATGT+TGG | - | chr1_1:19798188-19798207 | None:intergenic | 25.0% |
| !! | AAATTCGAGAAAGATTGTTT+TGG | + | chr1_1:19798685-19798704 | Msa0012860:CDS | 25.0% |
| ! | TCTTCATTATGCATAAACAT+CGG | - | chr1_1:19798718-19798737 | None:intergenic | 25.0% |
| ! | TTTATGCATAATGAAGATGT+CGG | + | chr1_1:19798721-19798740 | Msa0012860:CDS | 25.0% |
| GAATACTCCAAATTTGAACT+TGG | + | chr1_1:19798123-19798142 | Msa0012860:CDS | 30.0% | |
| AACTTCTTCTTGTCTTACTA+AGG | + | chr1_1:19798237-19798256 | Msa0012860:CDS | 30.0% | |
| TCTCTTGTAATTATTGTAGG+AGG | + | chr1_1:19798416-19798435 | Msa0012860:CDS | 30.0% | |
| ACATCAGAATGCTCATAAAA+GGG | + | chr1_1:19798468-19798487 | Msa0012860:CDS | 30.0% | |
| ! | TCTTCTTCTTTTCATTCTCT+TGG | + | chr1_1:19798574-19798593 | Msa0012860:CDS | 30.0% |
| ! | TATGTAGTAGATGTTTGTTG+AGG | - | chr1_1:19798850-19798869 | None:intergenic | 30.0% |
| GAATACTCCAAATTTGAACT+TGG | + | chr1_1:19798123-19798142 | Msa0012860:CDS | 30.0% | |
| AACTTCTTCTTGTCTTACTA+AGG | + | chr1_1:19798237-19798256 | Msa0012860:CDS | 30.0% | |
| TCTCTTGTAATTATTGTAGG+AGG | + | chr1_1:19798416-19798435 | Msa0012860:CDS | 30.0% | |
| ACATCAGAATGCTCATAAAA+GGG | + | chr1_1:19798468-19798487 | Msa0012860:CDS | 30.0% | |
| ! | TCTTCTTCTTTTCATTCTCT+TGG | + | chr1_1:19798574-19798593 | Msa0012860:CDS | 30.0% |
| ! | TATGTAGTAGATGTTTGTTG+AGG | - | chr1_1:19798850-19798869 | None:intergenic | 30.0% |
| TCAGCTTCCAAGTTCAAATT+TGG | - | chr1_1:19798133-19798152 | None:intergenic | 35.0% | |
| AGTATATGTTGGAACCTACT+TGG | - | chr1_1:19798177-19798196 | None:intergenic | 35.0% | |
| AGTAAGACAAGAAGAAGTTG+TGG | - | chr1_1:19798236-19798255 | None:intergenic | 35.0% | |
| GACATCAGAATGCTCATAAA+AGG | + | chr1_1:19798467-19798486 | Msa0012860:CDS | 35.0% | |
| TTAGCTTCTTTACCTCTTCA+TGG | + | chr1_1:19798550-19798569 | Msa0012860:CDS | 35.0% | |
| AAAGAAGAAGAACCATGAAG+AGG | - | chr1_1:19798565-19798584 | None:intergenic | 35.0% | |
| CATATCCTGATCTTACTTTG+AGG | + | chr1_1:19798866-19798885 | Msa0012860:CDS | 35.0% | |
| TAAAGCCTCAAAGTAAGATC+AGG | - | chr1_1:19798874-19798893 | None:intergenic | 35.0% | |
| TCAGCTTCCAAGTTCAAATT+TGG | - | chr1_1:19798133-19798152 | None:intergenic | 35.0% | |
| AGTATATGTTGGAACCTACT+TGG | - | chr1_1:19798177-19798196 | None:intergenic | 35.0% | |
| AGTAAGACAAGAAGAAGTTG+TGG | - | chr1_1:19798236-19798255 | None:intergenic | 35.0% | |
| GACATCAGAATGCTCATAAA+AGG | + | chr1_1:19798467-19798486 | Msa0012860:CDS | 35.0% | |
| TTAGCTTCTTTACCTCTTCA+TGG | + | chr1_1:19798550-19798569 | Msa0012860:CDS | 35.0% | |
| AAAGAAGAAGAACCATGAAG+AGG | - | chr1_1:19798565-19798584 | None:intergenic | 35.0% | |
| CATATCCTGATCTTACTTTG+AGG | + | chr1_1:19798866-19798885 | Msa0012860:CDS | 35.0% | |
| TAAAGCCTCAAAGTAAGATC+AGG | - | chr1_1:19798874-19798893 | None:intergenic | 35.0% | |
| TTAGAAGTAAGCAGCCAAGT+AGG | + | chr1_1:19798160-19798179 | Msa0012860:CDS | 40.0% | |
| ACTAAGGCAGACATTAATCC+AGG | + | chr1_1:19798253-19798272 | Msa0012860:CDS | 40.0% | |
| TCCTTCAAATCTTCATCGCT+CGG | - | chr1_1:19798313-19798332 | None:intergenic | 40.0% | |
| ! | GACACTAACAGTGAAGTACT+AGG | + | chr1_1:19798340-19798359 | Msa0012860:CDS | 40.0% |
| GAGAAAACTCTATGAATCGC+TGG | - | chr1_1:19798400-19798419 | None:intergenic | 40.0% | |
| ! | TTCTTTAGCTCACAAGCGTT+AGG | + | chr1_1:19798442-19798461 | Msa0012860:CDS | 40.0% |
| TCATAAAAGGGAGAGAACGA+TGG | + | chr1_1:19798480-19798499 | Msa0012860:CDS | 40.0% | |
| AGCTAAGCTTGTATACCCTT+CGG | - | chr1_1:19798536-19798555 | None:intergenic | 40.0% | |
| TCTTTCTCGAATTTCGCTGT+AGG | - | chr1_1:19798679-19798698 | None:intergenic | 40.0% | |
| ! | ATGAAGATGTCGGCGTATTT+TGG | + | chr1_1:19798731-19798750 | Msa0012860:CDS | 40.0% |
| !!! | TATTTTGGCCTGGAAGTTTC+AGG | + | chr1_1:19798746-19798765 | Msa0012860:CDS | 40.0% |
| TTTATCTGCCTGAAACTTCC+AGG | - | chr1_1:19798757-19798776 | None:intergenic | 40.0% | |
| ! | GTAGTAGATGTTTGTTGAGG+AGG | - | chr1_1:19798847-19798866 | None:intergenic | 40.0% |
| TTAGAAGTAAGCAGCCAAGT+AGG | + | chr1_1:19798160-19798179 | Msa0012860:CDS | 40.0% | |
| ACTAAGGCAGACATTAATCC+AGG | + | chr1_1:19798253-19798272 | Msa0012860:CDS | 40.0% | |
| TCCTTCAAATCTTCATCGCT+CGG | - | chr1_1:19798313-19798332 | None:intergenic | 40.0% | |
| ! | GACACTAACAGTGAAGTACT+AGG | + | chr1_1:19798340-19798359 | Msa0012860:CDS | 40.0% |
| GAGAAAACTCTATGAATCGC+TGG | - | chr1_1:19798400-19798419 | None:intergenic | 40.0% | |
| ! | TTCTTTAGCTCACAAGCGTT+AGG | + | chr1_1:19798442-19798461 | Msa0012860:CDS | 40.0% |
| TCATAAAAGGGAGAGAACGA+TGG | + | chr1_1:19798480-19798499 | Msa0012860:CDS | 40.0% | |
| AGCTAAGCTTGTATACCCTT+CGG | - | chr1_1:19798536-19798555 | None:intergenic | 40.0% | |
| TCTTTCTCGAATTTCGCTGT+AGG | - | chr1_1:19798679-19798698 | None:intergenic | 40.0% | |
| ! | ATGAAGATGTCGGCGTATTT+TGG | + | chr1_1:19798731-19798750 | Msa0012860:CDS | 40.0% |
| !!! | TATTTTGGCCTGGAAGTTTC+AGG | + | chr1_1:19798746-19798765 | Msa0012860:CDS | 40.0% |
| TTTATCTGCCTGAAACTTCC+AGG | - | chr1_1:19798757-19798776 | None:intergenic | 40.0% | |
| ! | GTAGTAGATGTTTGTTGAGG+AGG | - | chr1_1:19798847-19798866 | None:intergenic | 40.0% |
| AGAAGTTGTGGCACTGTCTT+TGG | - | chr1_1:19798224-19798243 | None:intergenic | 45.0% | |
| AGGTCAAGGGAAATAGAACC+TGG | - | chr1_1:19798274-19798293 | None:intergenic | 45.0% | |
| GAAGTTGAGAGTCAGGTCAA+GGG | - | chr1_1:19798287-19798306 | None:intergenic | 45.0% | |
| TGAAGTTGAGAGTCAGGTCA+AGG | - | chr1_1:19798288-19798307 | None:intergenic | 45.0% | |
| TCGGATTGAAGTTGAGAGTC+AGG | - | chr1_1:19798294-19798313 | None:intergenic | 45.0% | |
| TCCGAGCGATGAAGATTTGA+AGG | + | chr1_1:19798309-19798328 | Msa0012860:CDS | 45.0% | |
| AACTCTATGAATCGCTGGTG+CGG | - | chr1_1:19798395-19798414 | None:intergenic | 45.0% | |
| ! | TTTAGCTCACAAGCGTTAGG+TGG | + | chr1_1:19798445-19798464 | Msa0012860:CDS | 45.0% |
| GAGTAGGGATGTTTACCGAA+GGG | + | chr1_1:19798518-19798537 | Msa0012860:CDS | 45.0% | |
| !! | ACGATGATGGCATGTGGTTT+TGG | - | chr1_1:19798624-19798643 | None:intergenic | 45.0% |
| !! | ATCAGCATTGACGACGATGA+TGG | - | chr1_1:19798637-19798656 | None:intergenic | 45.0% |
| ATCGTCGTCAATGCTGATGA+GGG | + | chr1_1:19798639-19798658 | Msa0012860:CDS | 45.0% | |
| AGAAGTTGTGGCACTGTCTT+TGG | - | chr1_1:19798224-19798243 | None:intergenic | 45.0% | |
| AGGTCAAGGGAAATAGAACC+TGG | - | chr1_1:19798274-19798293 | None:intergenic | 45.0% | |
| GAAGTTGAGAGTCAGGTCAA+GGG | - | chr1_1:19798287-19798306 | None:intergenic | 45.0% | |
| TGAAGTTGAGAGTCAGGTCA+AGG | - | chr1_1:19798288-19798307 | None:intergenic | 45.0% | |
| TCGGATTGAAGTTGAGAGTC+AGG | - | chr1_1:19798294-19798313 | None:intergenic | 45.0% | |
| TCCGAGCGATGAAGATTTGA+AGG | + | chr1_1:19798309-19798328 | Msa0012860:CDS | 45.0% | |
| AACTCTATGAATCGCTGGTG+CGG | - | chr1_1:19798395-19798414 | None:intergenic | 45.0% | |
| ! | TTTAGCTCACAAGCGTTAGG+TGG | + | chr1_1:19798445-19798464 | Msa0012860:CDS | 45.0% |
| GAGTAGGGATGTTTACCGAA+GGG | + | chr1_1:19798518-19798537 | Msa0012860:CDS | 45.0% | |
| !! | ACGATGATGGCATGTGGTTT+TGG | - | chr1_1:19798624-19798643 | None:intergenic | 45.0% |
| !! | ATCAGCATTGACGACGATGA+TGG | - | chr1_1:19798637-19798656 | None:intergenic | 45.0% |
| ATCGTCGTCAATGCTGATGA+GGG | + | chr1_1:19798639-19798658 | Msa0012860:CDS | 45.0% | |
| CGAGTAGGGATGTTTACCGA+AGG | + | chr1_1:19798517-19798536 | Msa0012860:CDS | 50.0% | |
| ! | TTGACGACGATGATGGCATG+TGG | - | chr1_1:19798630-19798649 | None:intergenic | 50.0% |
| CATCGTCGTCAATGCTGATG+AGG | + | chr1_1:19798638-19798657 | Msa0012860:CDS | 50.0% | |
| CGAGTAGGGATGTTTACCGA+AGG | + | chr1_1:19798517-19798536 | Msa0012860:CDS | 50.0% | |
| ! | TTGACGACGATGATGGCATG+TGG | - | chr1_1:19798630-19798649 | None:intergenic | 50.0% |
| CATCGTCGTCAATGCTGATG+AGG | + | chr1_1:19798638-19798657 | Msa0012860:CDS | 50.0% | |
| CAAAGCGCGCTATGCGAGTA+GGG | + | chr1_1:19798503-19798522 | Msa0012860:CDS | 55.0% | |
| !!! | GATGTCGGCGTATTTTGGCC+TGG | + | chr1_1:19798736-19798755 | Msa0012860:CDS | 55.0% |
| CAAAGCGCGCTATGCGAGTA+GGG | + | chr1_1:19798503-19798522 | Msa0012860:CDS | 55.0% | |
| !!! | GATGTCGGCGTATTTTGGCC+TGG | + | chr1_1:19798736-19798755 | Msa0012860:CDS | 55.0% |
| GCAAAGCGCGCTATGCGAGT+AGG | + | chr1_1:19798502-19798521 | Msa0012860:CDS | 60.0% | |
| GCAAAGCGCGCTATGCGAGT+AGG | + | chr1_1:19798502-19798521 | Msa0012860:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 19798118 | 19798894 | 19798118 | ID=Msa0012860;Name=Msa0012860 |
| chr1_1 | mRNA | 19798118 | 19798894 | 19798118 | ID=Msa0012860-mRNA-1;Parent=Msa0012860;Name=Msa0012860-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|-1|0|1|-1|1|1|0|258 |
| chr1_1 | exon | 19798118 | 19798894 | 19798118 | ID=Msa0012860-mRNA-1:exon:7105;Parent=Msa0012860-mRNA-1 |
| chr1_1 | CDS | 19798118 | 19798894 | 19798118 | ID=Msa0012860-mRNA-1:cds;Parent=Msa0012860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
