Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0012980 | sp|Q9FNN6|SRM1_ARATH | 54.487 | 312 | 102 | 7 | 1 | 286 | 1 | 298 | 8.88e-101 | 300 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0012980 | TF | MYB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0012980 | MtrunA17_Chr1g0162081 | 79.195 | 298 | 50 | 2 | 1 | 286 | 1 | 298 | 9.74e-169 | 469 |
| Msa0012980 | MtrunA17_Chr8g0365011 | 46.382 | 304 | 108 | 9 | 3 | 277 | 1 | 278 | 1.10e-74 | 229 |
| Msa0012980 | MtrunA17_Chr4g0062741 | 46.886 | 273 | 103 | 7 | 12 | 244 | 8 | 278 | 1.91e-70 | 219 |
| Msa0012980 | MtrunA17_Chr8g0364731 | 59.302 | 172 | 48 | 5 | 129 | 279 | 10 | 180 | 1.44e-54 | 175 |
| Msa0012980 | MtrunA17_Chr1g0210471 | 50.000 | 188 | 82 | 3 | 10 | 195 | 22 | 199 | 1.83e-51 | 169 |
| Msa0012980 | MtrunA17_Chr5g0429521 | 49.198 | 187 | 84 | 4 | 5 | 188 | 22 | 200 | 2.85e-48 | 162 |
| Msa0012980 | MtrunA17_Chr3g0104071 | 45.361 | 194 | 94 | 3 | 4 | 193 | 35 | 220 | 1.58e-47 | 161 |
| Msa0012980 | MtrunA17_Chr7g0241761 | 46.354 | 192 | 94 | 3 | 7 | 195 | 30 | 215 | 2.03e-46 | 158 |
| Msa0012980 | MtrunA17_Chr5g0436501 | 47.120 | 191 | 83 | 4 | 10 | 195 | 25 | 202 | 9.79e-46 | 155 |
| Msa0012980 | MtrunA17_Chr8g0364741 | 55.085 | 118 | 51 | 1 | 3 | 120 | 1 | 116 | 1.13e-32 | 117 |
| Msa0012980 | MtrunA17_Chr1g0155181 | 54.795 | 73 | 33 | 0 | 8 | 80 | 3 | 75 | 9.11e-23 | 89.7 |
| Msa0012980 | MtrunA17_Chr6g0488471 | 74.545 | 55 | 14 | 0 | 130 | 184 | 107 | 161 | 1.12e-22 | 94.7 |
| Msa0012980 | MtrunA17_Chr4g0055931 | 60.606 | 66 | 26 | 0 | 128 | 193 | 103 | 168 | 6.76e-22 | 93.6 |
| Msa0012980 | MtrunA17_Chr5g0432921 | 33.880 | 183 | 98 | 9 | 9 | 187 | 18 | 181 | 1.45e-21 | 90.5 |
| Msa0012980 | MtrunA17_Chr8g0389241 | 68.421 | 57 | 17 | 1 | 128 | 184 | 113 | 168 | 4.73e-21 | 90.5 |
| Msa0012980 | MtrunA17_Chr2g0331031 | 68.421 | 57 | 18 | 0 | 128 | 184 | 117 | 173 | 6.89e-21 | 90.9 |
| Msa0012980 | MtrunA17_Chr5g0432941 | 32.787 | 183 | 99 | 9 | 9 | 187 | 19 | 181 | 3.91e-20 | 86.7 |
| Msa0012980 | MtrunA17_Chr5g0409841 | 57.971 | 69 | 27 | 1 | 128 | 194 | 100 | 168 | 4.99e-20 | 86.7 |
| Msa0012980 | MtrunA17_Chr3g0092621 | 66.102 | 59 | 20 | 0 | 128 | 186 | 92 | 150 | 7.23e-20 | 84.7 |
| Msa0012980 | MtrunA17_Chr3g0141601 | 55.072 | 69 | 31 | 0 | 9 | 77 | 4 | 72 | 1.61e-19 | 81.3 |
| Msa0012980 | MtrunA17_Chr5g0440741 | 59.701 | 67 | 23 | 2 | 128 | 191 | 108 | 173 | 1.91e-19 | 85.9 |
| Msa0012980 | MtrunA17_Chr5g0440731 | 59.701 | 67 | 23 | 2 | 128 | 191 | 113 | 178 | 3.02e-19 | 85.5 |
| Msa0012980 | MtrunA17_Chr3g0144631 | 50.000 | 68 | 34 | 0 | 10 | 77 | 14 | 81 | 1.59e-18 | 78.2 |
| Msa0012980 | MtrunA17_Chr5g0415191 | 74.576 | 59 | 15 | 0 | 128 | 186 | 110 | 168 | 2.61e-18 | 83.2 |
| Msa0012980 | MtrunA17_Chr5g0404101 | 52.941 | 68 | 32 | 0 | 7 | 74 | 14 | 81 | 3.16e-18 | 78.2 |
| Msa0012980 | MtrunA17_Chr6g0449111 | 51.389 | 72 | 35 | 0 | 3 | 74 | 1 | 72 | 1.10e-17 | 75.9 |
| Msa0012980 | MtrunA17_Chr7g0255841 | 56.250 | 64 | 28 | 0 | 15 | 78 | 15 | 78 | 1.15e-17 | 76.3 |
| Msa0012980 | MtrunA17_Chr4g0059701 | 46.667 | 120 | 56 | 1 | 128 | 247 | 92 | 203 | 1.65e-17 | 80.5 |
| Msa0012980 | MtrunA17_Chr5g0409831 | 54.286 | 70 | 29 | 1 | 128 | 194 | 85 | 154 | 1.41e-15 | 74.3 |
| Msa0012980 | MtrunA17_Chr3g0135671 | 57.627 | 59 | 22 | 2 | 129 | 184 | 100 | 158 | 3.09e-15 | 73.2 |
| Msa0012980 | MtrunA17_Chr3g0141641 | 40.580 | 69 | 41 | 0 | 12 | 80 | 3 | 71 | 5.33e-15 | 69.3 |
| Msa0012980 | MtrunA17_Chr8g0373131 | 40.000 | 70 | 41 | 1 | 9 | 78 | 2 | 70 | 8.43e-15 | 68.2 |
| Msa0012980 | MtrunA17_Chr8g0373111 | 40.000 | 70 | 41 | 1 | 9 | 78 | 2 | 70 | 8.55e-15 | 68.2 |
| Msa0012980 | MtrunA17_Chr8g0373121 | 40.000 | 70 | 41 | 1 | 9 | 78 | 2 | 70 | 8.55e-15 | 68.2 |
| Msa0012980 | MtrunA17_Chr6g0452791 | 55.556 | 63 | 18 | 1 | 128 | 190 | 88 | 140 | 8.44e-14 | 68.2 |
| Msa0012980 | MtrunA17_Chr3g0081631 | 44.000 | 75 | 41 | 1 | 3 | 76 | 1 | 75 | 1.38e-13 | 65.5 |
| Msa0012980 | MtrunA17_Chr5g0404301 | 46.032 | 63 | 33 | 1 | 10 | 72 | 2 | 63 | 1.82e-13 | 64.3 |
| Msa0012980 | MtrunA17_Chr8g0373101 | 42.857 | 63 | 35 | 1 | 10 | 72 | 3 | 64 | 6.39e-13 | 62.8 |
| Msa0012980 | MtrunA17_Chr1g0192061 | 50.000 | 66 | 29 | 2 | 128 | 190 | 69 | 133 | 3.62e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0012980 | AT5G08520.1 | 54.487 | 312 | 102 | 7 | 1 | 286 | 1 | 298 | 9.03e-102 | 300 |
| Msa0012980 | AT1G49010.1 | 41.455 | 275 | 116 | 7 | 12 | 247 | 8 | 276 | 2.12e-58 | 189 |
| Msa0012980 | AT5G23650.1 | 37.003 | 327 | 149 | 6 | 5 | 275 | 6 | 331 | 7.84e-54 | 178 |
| Msa0012980 | AT5G04760.1 | 38.889 | 252 | 109 | 7 | 9 | 255 | 3 | 214 | 4.74e-48 | 159 |
| Msa0012980 | AT5G58900.1 | 49.162 | 179 | 86 | 3 | 12 | 188 | 34 | 209 | 4.30e-46 | 157 |
| Msa0012980 | AT2G38090.1 | 45.355 | 183 | 96 | 2 | 10 | 188 | 27 | 209 | 7.93e-45 | 154 |
| Msa0012980 | AT5G05790.2 | 42.584 | 209 | 101 | 4 | 8 | 210 | 27 | 222 | 9.39e-44 | 150 |
| Msa0012980 | AT5G05790.1 | 42.584 | 209 | 101 | 4 | 8 | 210 | 27 | 222 | 9.39e-44 | 150 |
| Msa0012980 | AT3G11280.2 | 45.763 | 177 | 82 | 2 | 12 | 188 | 33 | 195 | 4.88e-41 | 143 |
| Msa0012980 | AT3G11280.1 | 45.763 | 177 | 82 | 2 | 12 | 188 | 33 | 195 | 4.88e-41 | 143 |
| Msa0012980 | AT5G01200.1 | 42.632 | 190 | 91 | 4 | 12 | 188 | 30 | 214 | 4.34e-39 | 138 |
| Msa0012980 | AT3G10580.2 | 38.043 | 184 | 91 | 3 | 12 | 195 | 8 | 168 | 9.50e-30 | 113 |
| Msa0012980 | AT3G10580.1 | 38.043 | 184 | 91 | 3 | 12 | 195 | 8 | 168 | 1.88e-29 | 113 |
| Msa0012980 | AT4G09450.1 | 37.143 | 175 | 86 | 2 | 11 | 185 | 6 | 156 | 3.22e-25 | 100 |
| Msa0012980 | AT5G47390.1 | 51.648 | 91 | 39 | 1 | 128 | 218 | 104 | 189 | 3.77e-22 | 95.1 |
| Msa0012980 | AT5G61620.1 | 58.537 | 82 | 24 | 2 | 130 | 201 | 118 | 199 | 5.81e-22 | 94.0 |
| Msa0012980 | AT4G39250.1 | 57.576 | 66 | 28 | 0 | 12 | 77 | 14 | 79 | 9.60e-21 | 85.1 |
| Msa0012980 | AT1G75250.1 | 36.607 | 112 | 71 | 0 | 10 | 121 | 10 | 121 | 1.04e-20 | 85.9 |
| Msa0012980 | AT5G56840.1 | 61.905 | 63 | 23 | 1 | 128 | 189 | 99 | 161 | 2.95e-20 | 87.4 |
| Msa0012980 | AT1G75250.2 | 41.860 | 86 | 50 | 0 | 10 | 95 | 10 | 95 | 1.69e-19 | 81.6 |
| Msa0012980 | AT1G70000.1 | 74.138 | 58 | 15 | 0 | 128 | 185 | 106 | 163 | 1.86e-17 | 80.5 |
| Msa0012980 | AT1G70000.2 | 74.138 | 58 | 15 | 0 | 128 | 185 | 106 | 163 | 1.86e-17 | 80.5 |
| Msa0012980 | AT3G10590.1 | 33.696 | 184 | 103 | 7 | 9 | 185 | 4 | 175 | 6.15e-17 | 77.8 |
| Msa0012980 | AT2G21650.1 | 52.239 | 67 | 32 | 0 | 12 | 78 | 14 | 80 | 1.02e-16 | 74.3 |
| Msa0012980 | AT1G19000.2 | 50.495 | 101 | 42 | 2 | 124 | 216 | 106 | 206 | 9.68e-16 | 75.9 |
| Msa0012980 | AT1G19000.1 | 50.495 | 101 | 42 | 2 | 124 | 216 | 106 | 206 | 9.68e-16 | 75.9 |
| Msa0012980 | AT3G16350.1 | 80.000 | 40 | 8 | 0 | 128 | 167 | 145 | 184 | 1.54e-15 | 76.3 |
| Msa0012980 | AT2G18328.1 | 50.794 | 63 | 31 | 0 | 16 | 78 | 15 | 77 | 1.90e-15 | 70.5 |
| Msa0012980 | AT1G19510.1 | 48.387 | 62 | 32 | 0 | 15 | 76 | 15 | 76 | 7.76e-15 | 69.3 |
| Msa0012980 | AT1G74840.2 | 82.051 | 39 | 7 | 0 | 128 | 166 | 104 | 142 | 8.75e-15 | 72.8 |
| Msa0012980 | AT1G74840.1 | 82.051 | 39 | 7 | 0 | 128 | 166 | 104 | 142 | 1.25e-14 | 72.8 |
Find 105 sgRNAs with CRISPR-Local
Find 341 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTCAACAGGTTATTTCTTC+TGG | 0.105969 | 1_1:+19996943 | Msa0012980:intron |
| TTTCAACAAGACTATGACTA+TGG | 0.261298 | 1_1:+19992981 | None:intergenic |
| AGCTACTTGTGTTGGTGTTC+GGG | 0.297973 | 1_1:-19997023 | None:intergenic |
| TTCAACAGGTTATTTCTTCT+GGG | 0.318260 | 1_1:+19996944 | Msa0012980:intron |
| TAGCTACTTGTGTTGGTGTT+CGG | 0.322855 | 1_1:-19997024 | None:intergenic |
| GAGCTCTTGGTTGATGATAT+TGG | 0.334244 | 1_1:+19993156 | Msa0012980:CDS |
| GCTCCTCCACACATGGCTTA+TGG | 0.382264 | 1_1:+19997334 | Msa0012980:CDS |
| GAAGATTGCGGCCGATGTAC+TGG | 0.391229 | 1_1:+19993101 | Msa0012980:CDS |
| GGTATTCGAGCACCAGTTCC+CGG | 0.416184 | 1_1:+19997355 | Msa0012980:CDS |
| CGAGTCTAACCATGGAACTA+AGG | 0.427854 | 1_1:+19993302 | Msa0012980:CDS |
| AGATGAACCGTTTGTTTGAC+CGG | 0.434374 | 1_1:-19997167 | None:intergenic |
| GCCATCGTATAATTCTTCTT+CGG | 0.436648 | 1_1:+19993206 | Msa0012980:CDS |
| CGATGTACTGGGGAAGACTA+TGG | 0.438694 | 1_1:+19993113 | Msa0012980:CDS |
| CAGGTTATTTCTTCTGGGCC+TGG | 0.439867 | 1_1:+19996949 | Msa0012980:intron |
| ATGCTAGCGATGAAGGAGTT+GGG | 0.443412 | 1_1:+19993244 | Msa0012980:CDS |
| TAAGCAGCATTATGAGCTCT+TGG | 0.453346 | 1_1:+19993143 | Msa0012980:CDS |
| ACAATAGCTCTGAGTGGAGC+TGG | 0.456097 | 1_1:+19993013 | Msa0012980:CDS |
| GACACAACTGTACCGGGAAC+TGG | 0.456953 | 1_1:-19997367 | None:intergenic |
| ACCGTTTGTTTGACCGGTGA+TGG | 0.458958 | 1_1:-19997161 | None:intergenic |
| GCAGAAGTATGATGAGGCAT+AGG | 0.460682 | 1_1:-19997424 | None:intergenic |
| TGAGGCATAGGGTATGTCAT+AGG | 0.463430 | 1_1:-19997412 | None:intergenic |
| CTATCGGTTGTCCAATGGTA+GGG | 0.470550 | 1_1:-19997267 | None:intergenic |
| ACAAGTCATGCTAGCGATGA+AGG | 0.470619 | 1_1:+19993237 | Msa0012980:intron |
| CCATCGACTACCGGGGTACC+AGG | 0.476257 | 1_1:+19997226 | Msa0012980:CDS |
| GCACACAACCAGCCTCAATC+TGG | 0.478933 | 1_1:-19993179 | None:intergenic |
| ATCTTGAGCCCTTAGTTCCA+TGG | 0.490085 | 1_1:-19993311 | None:intergenic |
| ATCGTATAATTCTTCTTCGG+AGG | 0.495952 | 1_1:+19993209 | Msa0012980:CDS |
| CTGAGGATGATTCGGATCGA+TGG | 0.497129 | 1_1:+19993076 | Msa0012980:CDS |
| AAGATTGCGGCCGATGTACT+GGG | 0.500401 | 1_1:+19993102 | Msa0012980:CDS |
| GACTATGACTATGGATGAAG+TGG | 0.502959 | 1_1:+19992990 | None:intergenic |
| GACGTATCCTGAGGATGATT+CGG | 0.503412 | 1_1:+19993068 | Msa0012980:CDS |
| CATGCTAGCGATGAAGGAGT+TGG | 0.506146 | 1_1:+19993243 | Msa0012980:CDS |
| GACCATGTTCACTGGTGCAC+CGG | 0.507025 | 1_1:-19997389 | None:intergenic |
| GGCCTGGACAAGTACGGAAA+AGG | 0.510767 | 1_1:+19996965 | Msa0012980:CDS |
| ATGTATGCCGCCCCTACCAT+TGG | 0.512679 | 1_1:+19997256 | Msa0012980:CDS |
| AAGCTGTTCCATCGACTACC+GGG | 0.514360 | 1_1:+19997218 | Msa0012980:CDS |
| GGAGGAGCGGAAAGATTCAC+AGG | 0.514662 | 1_1:-19997319 | None:intergenic |
| GCACCGGACACAACTGTACC+GGG | 0.516203 | 1_1:-19997373 | None:intergenic |
| CCTATCGGTTGTCCAATGGT+AGG | 0.516898 | 1_1:-19997268 | None:intergenic |
| CCCATCACCGGTCAAACAAA+CGG | 0.521384 | 1_1:+19997160 | Msa0012980:CDS |
| AACGACGAAAGGGTATTGCT+TGG | 0.523028 | 1_1:+19993343 | Msa0012980:CDS |
| CCGTTTGTTTGACCGGTGAT+GGG | 0.524105 | 1_1:-19997160 | None:intergenic |
| TCTTTCCGCTCCTCCACACA+TGG | 0.528941 | 1_1:+19997327 | Msa0012980:CDS |
| TAAGGCATTTGAAAATGCCT+TGG | 0.529052 | 1_1:+19993044 | Msa0012980:CDS |
| GTCATAGGGACCATGTTCAC+TGG | 0.529140 | 1_1:-19997397 | None:intergenic |
| TCGGATCAAGAACGACGAAA+GGG | 0.530948 | 1_1:+19993333 | Msa0012980:CDS |
| TGCACCGGACACAACTGTAC+CGG | 0.536071 | 1_1:-19997374 | None:intergenic |
| ATCATACTTCTGCTCCTCAC+AGG | 0.536148 | 1_1:+19997434 | Msa0012980:CDS |
| CATTCCTGCACCTGGTACCC+CGG | 0.539842 | 1_1:-19997236 | None:intergenic |
| CAAGCTGTTCCATCGACTAC+CGG | 0.542693 | 1_1:+19997217 | Msa0012980:CDS |
| TGATGATATTGGCCAGATTG+AGG | 0.549035 | 1_1:+19993167 | Msa0012980:CDS |
| TGAGGATGATTCGGATCGAT+GGG | 0.549268 | 1_1:+19993077 | Msa0012980:CDS |
| ACTACCGGGGTACCAGGTGC+AGG | 0.549660 | 1_1:+19997232 | Msa0012980:CDS |
| CATCGATCCGAATCATCCTC+AGG | 0.553968 | 1_1:-19993075 | None:intergenic |
| GATATTGGCCAGATTGAGGC+TGG | 0.554254 | 1_1:+19993171 | Msa0012980:CDS |
| TGCTAGCGATGAAGGAGTTG+GGG | 0.556566 | 1_1:+19993245 | Msa0012980:CDS |
| GGGAAGAAGGGTGGTCACAA+TGG | 0.559678 | 1_1:+19993267 | Msa0012980:CDS |
| CAATAGCTCTGAGTGGAGCT+GGG | 0.561880 | 1_1:+19993014 | Msa0012980:CDS |
| TCGTATAATTCTTCTTCGGA+GGG | 0.565463 | 1_1:+19993210 | Msa0012980:CDS |
| GAGGCATAGGGTATGTCATA+GGG | 0.567085 | 1_1:-19997411 | None:intergenic |
| TGGAACTAAGGGCTCAAGAT+CGG | 0.567625 | 1_1:+19993314 | Msa0012980:CDS |
| GGACCTTTAGTATCTGCTGT+TGG | 0.570389 | 1_1:+19997292 | Msa0012980:CDS |
| GTGGAGCTGGGAGCAAGATA+AGG | 0.570448 | 1_1:+19993026 | Msa0012980:CDS |
| GTTCCCGGTACAGTTGTGTC+CGG | 0.571740 | 1_1:+19997370 | Msa0012980:CDS |
| GCATGACTAGCTACTTGTGT+TGG | 0.571899 | 1_1:-19997031 | None:intergenic |
| GATACTAAAGGTCCTCCTAT+CGG | 0.572681 | 1_1:-19997283 | None:intergenic |
| CTTCTGGGCCTGGACAAGTA+CGG | 0.573150 | 1_1:+19996959 | Msa0012980:CDS |
| ATCGGATCAAGAACGACGAA+AGG | 0.573935 | 1_1:+19993332 | Msa0012980:CDS |
| TCCTCCTATCGGTTGTCCAA+TGG | 0.578098 | 1_1:-19997272 | None:intergenic |
| CCTGGTACCCCGGTAGTCGA+TGG | 0.583623 | 1_1:-19997226 | None:intergenic |
| GAGTCTAACCATGGAACTAA+GGG | 0.584526 | 1_1:+19993303 | Msa0012980:CDS |
| TATCGGTTGTCCAATGGTAG+GGG | 0.590354 | 1_1:-19997266 | None:intergenic |
| CAGAAGTATGATGAGGCATA+GGG | 0.592758 | 1_1:-19997423 | None:intergenic |
| GCGGCATACATTCCTGCACC+TGG | 0.597496 | 1_1:-19997244 | None:intergenic |
| GTGCCAACAGCAGATACTAA+AGG | 0.601157 | 1_1:-19997295 | None:intergenic |
| ACCATTGGACAACCGATAGG+AGG | 0.606609 | 1_1:+19997271 | Msa0012980:CDS |
| GTCCGGTGCACCAGTGAACA+TGG | 0.607516 | 1_1:+19997387 | Msa0012980:CDS |
| AAAGGGTATTGCTTGGACTG+AGG | 0.609474 | 1_1:+19993350 | Msa0012980:CDS |
| ACGCCTCAAGGACCCATCAC+CGG | 0.610722 | 1_1:+19997148 | Msa0012980:CDS |
| GGAGATGTTTCAACGCCTCA+AGG | 0.611096 | 1_1:+19997136 | Msa0012980:CDS |
| CATAGTCTTCCCCAGTACAT+CGG | 0.615235 | 1_1:-19993112 | None:intergenic |
| ATAAGCCATGTGTGGAGGAG+CGG | 0.616404 | 1_1:-19997332 | None:intergenic |
| CGGTTGTCCAATGGTAGGGG+CGG | 0.622937 | 1_1:-19997263 | None:intergenic |
| CGAATACCATAAGCCATGTG+TGG | 0.628587 | 1_1:-19997340 | None:intergenic |
| GAAGAATTATACGATGGCAA+AGG | 0.633833 | 1_1:-19993201 | None:intergenic |
| CCTACCATTGGACAACCGAT+AGG | 0.635695 | 1_1:+19997268 | Msa0012980:CDS |
| ACAAGTACGGAAAAGGCGAC+TGG | 0.636078 | 1_1:+19996972 | Msa0012980:CDS |
| GGATCGATGGGAGAAGATTG+CGG | 0.637780 | 1_1:+19993089 | Msa0012980:CDS |
| TGCCTTGGCGACGTATCCTG+AGG | 0.642436 | 1_1:+19993059 | Msa0012980:CDS |
| GCTAGCGATGAAGGAGTTGG+GGG | 0.644660 | 1_1:+19993246 | Msa0012980:CDS |
| ATCCTCAGGATACGTCGCCA+AGG | 0.650046 | 1_1:-19993061 | None:intergenic |
| ATACCATAAGCCATGTGTGG+AGG | 0.651153 | 1_1:-19997337 | None:intergenic |
| ACTCGATGAACAAAGACAGA+AGG | 0.651461 | 1_1:+19997077 | Msa0012980:CDS |
| GAGGAGCGGAAAGATTCACA+GGG | 0.668882 | 1_1:-19997318 | None:intergenic |
| TGACCGGTGATGGGTCCTTG+AGG | 0.677554 | 1_1:-19997151 | None:intergenic |
| TGAGGAGCAGAAGTATGATG+AGG | 0.681290 | 1_1:-19997430 | None:intergenic |
| AGATTGCGGCCGATGTACTG+GGG | 0.686502 | 1_1:+19993103 | Msa0012980:CDS |
| GACATTACAAGCGTTAACAA+CGG | 0.687822 | 1_1:+19997115 | Msa0012980:CDS |
| TCCGAAGAAGAATTATACGA+TGG | 0.694503 | 1_1:-19993207 | None:intergenic |
| AAGTGGACAATAGCTCTGAG+TGG | 0.698553 | 1_1:+19993007 | Msa0012980:CDS |
| AGCTGTTCCATCGACTACCG+GGG | 0.712801 | 1_1:+19997219 | Msa0012980:CDS |
| CTTGGACTGAGGAAGAACAC+AGG | 0.712971 | 1_1:+19993361 | Msa0012980:CDS |
| ACAGCAGCACTTTACCTGTG+AGG | 0.725384 | 1_1:-19997448 | None:intergenic |
| CTAGCGATGAAGGAGTTGGG+GGG | 0.726058 | 1_1:+19993247 | Msa0012980:CDS |
| AGGAGCGGAAAGATTCACAG+GGG | 0.822895 | 1_1:-19997317 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTAATCATATTTAAAAAA+AGG | - | chr1_1:19994286-19994305 | None:intergenic | 10.0% |
| !!! | TTTTTATTGACAAAATTTAT+TGG | + | chr1_1:19994865-19994884 | Msa0012980:intron | 10.0% |
| !! | TAGTTAAAAGTAATCAAAAT+TGG | - | chr1_1:19993429-19993448 | None:intergenic | 15.0% |
| !!! | TTCTTTAAATGTCATTTTTT+TGG | + | chr1_1:19993609-19993628 | Msa0012980:intron | 15.0% |
| !! | AATAATTACAATAGTTAAGA+TGG | - | chr1_1:19993838-19993857 | None:intergenic | 15.0% |
| !! | GTATATTATATATTGTTTGT+TGG | + | chr1_1:19993973-19993992 | Msa0012980:intron | 15.0% |
| !! | AAACTTATAAAATGAATTTG+AGG | + | chr1_1:19994596-19994615 | Msa0012980:intron | 15.0% |
| !! | AACTTATAAAATGAATTTGA+GGG | + | chr1_1:19994597-19994616 | Msa0012980:intron | 15.0% |
| !!! | AATTTTATACTTATCCTATT+TGG | + | chr1_1:19994701-19994720 | Msa0012980:intron | 15.0% |
| !! | ATAATAGGTTATAAATAAGA+GGG | - | chr1_1:19995025-19995044 | None:intergenic | 15.0% |
| !!! | AATATGTTGAGTTTTATTTT+AGG | + | chr1_1:19995597-19995616 | Msa0012980:intron | 15.0% |
| !!! | ATGAAAAAAGTTTTTCAAAT+TGG | - | chr1_1:19996188-19996207 | None:intergenic | 15.0% |
| !! | TTAAGTTATTGTATAAAACA+TGG | + | chr1_1:19996233-19996252 | Msa0012980:intron | 15.0% |
| !! | TTTGAATAATAAACTATATC+AGG | + | chr1_1:19997594-19997613 | Msa0012980:intron | 15.0% |
| !! | TTGAATAATAAACTATATCA+GGG | + | chr1_1:19997595-19997614 | Msa0012980:intron | 15.0% |
| !! | TGCTAATTAATACAGATAAA+TGG | - | chr1_1:19993637-19993656 | None:intergenic | 20.0% |
| !! | TAATTGGTATCAATATCATA+TGG | + | chr1_1:19993900-19993919 | Msa0012980:intron | 20.0% |
| !! | AATTTCTTCAAAACAAATCA+AGG | - | chr1_1:19994019-19994038 | None:intergenic | 20.0% |
| !! | TTTAATAAATATTGCGTCAA+TGG | + | chr1_1:19994241-19994260 | Msa0012980:intron | 20.0% |
| !! | TAATAGGTTATAAATAAGAG+GGG | - | chr1_1:19995024-19995043 | None:intergenic | 20.0% |
| !! | GATAATAGGTTATAAATAAG+AGG | - | chr1_1:19995026-19995045 | None:intergenic | 20.0% |
| !! | CAATATTCAATTAACAGTTA+TGG | + | chr1_1:19995380-19995399 | Msa0012980:intron | 20.0% |
| !!! | ATTTTCAACACTATTCAAAT+TGG | - | chr1_1:19995504-19995523 | None:intergenic | 20.0% |
| !!! | TTGAATAGTGTTGAAAATAT+AGG | + | chr1_1:19995506-19995525 | Msa0012980:intron | 20.0% |
| !!! | TGAATAGTGTTGAAAATATA+GGG | + | chr1_1:19995507-19995526 | Msa0012980:intron | 20.0% |
| !! | AAAAGCAATATAGTTTCATT+AGG | - | chr1_1:19995574-19995593 | None:intergenic | 20.0% |
| !! | AAAATATCTATGGCAATTAT+TGG | - | chr1_1:19995715-19995734 | None:intergenic | 20.0% |
| !! | ATATTTATCTTTCCAACAAT+GGG | - | chr1_1:19995925-19995944 | None:intergenic | 20.0% |
| !! | AATATTTATCTTTCCAACAA+TGG | - | chr1_1:19995926-19995945 | None:intergenic | 20.0% |
| !! | AATAACAGAACAAAAAACAA+AGG | - | chr1_1:19996129-19996148 | None:intergenic | 20.0% |
| !! | GTCATAAATAACAATCATAA+AGG | - | chr1_1:19996459-19996478 | None:intergenic | 20.0% |
| !! | CTCAAAATGTATTTCATATT+AGG | + | chr1_1:19996626-19996645 | Msa0012980:intron | 20.0% |
| !! | AACAAAAAAAATGATAGAAC+AGG | + | chr1_1:19996713-19996732 | Msa0012980:intron | 20.0% |
| !! | AAATTTGCATGTAATGAAAT+TGG | - | chr1_1:19996789-19996808 | None:intergenic | 20.0% |
| !!! | TTTTTATTTATTTGCATGCA+TGG | + | chr1_1:19997551-19997570 | Msa0012980:intron | 20.0% |
| ! | AGTAATCAAAATTGGCATAA+AGG | - | chr1_1:19993421-19993440 | None:intergenic | 25.0% |
| !!! | GTTATTTTTACTGAACCATA+TGG | + | chr1_1:19993670-19993689 | Msa0012980:intron | 25.0% |
| ! | TTATTAACACTGAATGAGAA+AGG | + | chr1_1:19994406-19994425 | Msa0012980:intron | 25.0% |
| ! | TATTAACACTGAATGAGAAA+GGG | + | chr1_1:19994407-19994426 | Msa0012980:intron | 25.0% |
| !!! | TATCATTTTAACACCATGTT+AGG | - | chr1_1:19994516-19994535 | None:intergenic | 25.0% |
| ! | AATAGGTTATAAATAAGAGG+GGG | - | chr1_1:19995023-19995042 | None:intergenic | 25.0% |
| ! | TTTATAACCTATTATCTCCA+AGG | + | chr1_1:19995030-19995049 | Msa0012980:intron | 25.0% |
| ! | GAGATCTTAAACCTATAAAA+TGG | + | chr1_1:19995450-19995469 | Msa0012980:intron | 25.0% |
| ! | GAATAGCTGTAAAATATCTA+TGG | - | chr1_1:19995725-19995744 | None:intergenic | 25.0% |
| ! | TTTACAGCTATTCTTACAAA+TGG | + | chr1_1:19995732-19995751 | Msa0012980:intron | 25.0% |
| !!! | TACTTTCTTGTTTTCTTCTT+TGG | + | chr1_1:19996103-19996122 | Msa0012980:intron | 25.0% |
| ! | GCAAATATAGTCGAATATAA+TGG | - | chr1_1:19996567-19996586 | None:intergenic | 25.0% |
| !!! | GGAATAATGAAAATGGATTA+TGG | - | chr1_1:19996665-19996684 | None:intergenic | 25.0% |
| ! | TAAGGATCAAATCTTAACTA+CGG | - | chr1_1:19996742-19996761 | None:intergenic | 25.0% |
| ! | TGTTTAAAAGTTAGAATCTG+AGG | + | chr1_1:19996831-19996850 | Msa0012980:intron | 25.0% |
| !! | TCTCATATTTTGCTTCAAAT+TGG | + | chr1_1:19996921-19996940 | Msa0012980:intron | 25.0% |
| !! | TCTTCTATGTTTTGTACATT+AGG | - | chr1_1:19997481-19997500 | None:intergenic | 25.0% |
| ! | AAAACATAGAAGACTTAGAT+TGG | + | chr1_1:19997488-19997507 | Msa0012980:intron | 25.0% |
| ! | TTGAATGTATGTTTCATTAC+AGG | + | chr1_1:19997623-19997642 | Msa0012980:intron | 25.0% |
| !! | GTTTTAAGCCTATAGTTTTG+TGG | + | chr1_1:19993476-19993495 | Msa0012980:intron | 30.0% |
| ACAACTAACCACAAAACTAT+AGG | - | chr1_1:19993487-19993506 | None:intergenic | 30.0% | |
| ATGTTCAGATTTCATATGAC+AGG | - | chr1_1:19993531-19993550 | None:intergenic | 30.0% | |
| ! | GCAATGCATCAACTATTTTA+AGG | - | chr1_1:19993712-19993731 | None:intergenic | 30.0% |
| !! | GTAATAGTCTTGTCAAATAG+CGG | + | chr1_1:19994093-19994112 | Msa0012980:intron | 30.0% |
| AAATATTGCGTCAATGGAAA+TGG | + | chr1_1:19994247-19994266 | Msa0012980:intron | 30.0% | |
| AATATTGCGTCAATGGAAAT+GGG | + | chr1_1:19994248-19994267 | Msa0012980:intron | 30.0% | |
| TTGTACTAAATAGCGTATCA+CGG | + | chr1_1:19994328-19994347 | Msa0012980:intron | 30.0% | |
| GGGAGTAAGTTATTTAGTAT+GGG | + | chr1_1:19994434-19994453 | Msa0012980:intron | 30.0% | |
| ! | ACATGGTGTTAAAATGATAG+AGG | + | chr1_1:19994517-19994536 | Msa0012980:intron | 30.0% |
| GACAACACTTTCTACTAAAA+AGG | - | chr1_1:19994784-19994803 | None:intergenic | 30.0% | |
| !! | TAGAAAGTGTTGTCAAATAG+CGG | + | chr1_1:19994790-19994809 | Msa0012980:intron | 30.0% |
| ! | TCCCAAACTTTTAAATCGAA+AGG | + | chr1_1:19994979-19994998 | Msa0012980:intron | 30.0% |
| GCCTTTCGATTTAAAAGTTT+GGG | - | chr1_1:19994983-19995002 | None:intergenic | 30.0% | |
| AAATAAGAGGGGGAAATTAT+TGG | - | chr1_1:19995013-19995032 | None:intergenic | 30.0% | |
| TGTAGAAACATGTCAACAAA+AGG | - | chr1_1:19995362-19995381 | None:intergenic | 30.0% | |
| ! | CGAGTGTTAAACCATTTTAT+AGG | - | chr1_1:19995464-19995483 | None:intergenic | 30.0% |
| TTCAACACTATTCAAATTGG+TGG | - | chr1_1:19995501-19995520 | None:intergenic | 30.0% | |
| CAATATAGTTTCATTAGGCT+AGG | - | chr1_1:19995569-19995588 | None:intergenic | 30.0% | |
| TTTCCCTTAATCTGTATGTA+CGG | - | chr1_1:19995785-19995804 | None:intergenic | 30.0% | |
| TACAGATTAAGGGAAAAGAT+AGG | + | chr1_1:19995789-19995808 | Msa0012980:intron | 30.0% | |
| TTAAGGGAAAAGATAGGTTA+AGG | + | chr1_1:19995795-19995814 | Msa0012980:intron | 30.0% | |
| AAAGATTCTGCATATGTTCA+TGG | - | chr1_1:19995977-19995996 | None:intergenic | 30.0% | |
| ATCCATGTAATTTGGTTAGT+TGG | + | chr1_1:19996006-19996025 | Msa0012980:intron | 30.0% | |
| ATCCAACTAACCAAATTACA+TGG | - | chr1_1:19996011-19996030 | None:intergenic | 30.0% | |
| GTGTTCAATTCAATCCAAAT+GGG | - | chr1_1:19996345-19996364 | None:intergenic | 30.0% | |
| ! | TATTGTGCTAGTTTATTGAC+CGG | + | chr1_1:19996496-19996515 | Msa0012980:intron | 30.0% |
| !! | ATGAAAATGGATTATGGTGA+AGG | - | chr1_1:19996659-19996678 | None:intergenic | 30.0% |
| GGAAATGGGAATAATGAAAA+TGG | - | chr1_1:19996672-19996691 | None:intergenic | 30.0% | |
| CTTAAAGAACACAAGGAAAT+GGG | - | chr1_1:19996686-19996705 | None:intergenic | 30.0% | |
| GTAAGTCAAAGAAGAATGTA+AGG | - | chr1_1:19996760-19996779 | None:intergenic | 30.0% | |
| !!! | GTGTGAATTTTGCTGTTTTA+TGG | + | chr1_1:19996872-19996891 | Msa0012980:intron | 30.0% |
| !! | ACTGTCTGTTTCTAATGAAA+TGG | + | chr1_1:19996897-19996916 | Msa0012980:intron | 30.0% |
| !! | TTCAACAGGTTATTTCTTCT+GGG | + | chr1_1:19996944-19996963 | Msa0012980:intron | 30.0% |
| ACAAAACAACCATACTCATA+TGG | - | chr1_1:19997684-19997703 | None:intergenic | 30.0% | |
| ! | TAAGGCATTTGAAAATGCCT+TGG | + | chr1_1:19993044-19993063 | Msa0012980:CDS | 35.0% |
| GAAGAATTATACGATGGCAA+AGG | - | chr1_1:19993204-19993223 | None:intergenic | 35.0% | |
| GCCATCGTATAATTCTTCTT+CGG | + | chr1_1:19993206-19993225 | Msa0012980:CDS | 35.0% | |
| TCCGAAGAAGAATTATACGA+TGG | - | chr1_1:19993210-19993229 | None:intergenic | 35.0% | |
| ATCGTATAATTCTTCTTCGG+AGG | + | chr1_1:19993209-19993228 | Msa0012980:CDS | 35.0% | |
| TCGTATAATTCTTCTTCGGA+GGG | + | chr1_1:19993210-19993229 | Msa0012980:CDS | 35.0% | |
| GGCTTAAAACATCATTAGCT+TGG | - | chr1_1:19993466-19993485 | None:intergenic | 35.0% | |
| ! | ATAGTTGATGCATTGCATTG+AGG | + | chr1_1:19993716-19993735 | Msa0012980:intron | 35.0% |
| !!! | TTGCATTGAGGTTTTAGTTG+AGG | + | chr1_1:19993728-19993747 | Msa0012980:intron | 35.0% |
| !! | TTTTAGTTGAGGATGAAGAG+TGG | + | chr1_1:19993739-19993758 | Msa0012980:intron | 35.0% |
| AAGAGTGGTAAAAGATAGAG+TGG | + | chr1_1:19993754-19993773 | Msa0012980:intron | 35.0% | |
| AGAGTGGTAAAAGATAGAGT+GGG | + | chr1_1:19993755-19993774 | Msa0012980:intron | 35.0% | |
| ATTACCACACAAGATCACAT+CGG | - | chr1_1:19993884-19993903 | None:intergenic | 35.0% | |
| ATGTGATCTTGTGTGGTAAT+TGG | + | chr1_1:19993884-19993903 | Msa0012980:intron | 35.0% | |
| TTGTCAAATAGCGGTTATAG+TGG | + | chr1_1:19994102-19994121 | Msa0012980:intron | 35.0% | |
| CGGGAGTAAGTTATTTAGTA+TGG | + | chr1_1:19994433-19994452 | Msa0012980:intron | 35.0% | |
| TGTTTGAACTGACATCTATG+TGG | + | chr1_1:19994572-19994591 | Msa0012980:intron | 35.0% | |
| GAAAAGTAACCATGTTCATG+CGG | - | chr1_1:19994627-19994646 | None:intergenic | 35.0% | |
| !! | CTGCACTGATTTGTGTTATT+CGG | + | chr1_1:19994649-19994668 | Msa0012980:intron | 35.0% |
| GATACTCATTATAGCAGATG+AGG | - | chr1_1:19994922-19994941 | None:intergenic | 35.0% | |
| ATCTGCTATAATGAGTATCC+AGG | + | chr1_1:19994923-19994942 | Msa0012980:intron | 35.0% | |
| !! | CCAAGTTCTTTTGAAAAACC+TGG | - | chr1_1:19994944-19994963 | None:intergenic | 35.0% |
| !! | CCAGGTTTTTCAAAAGAACT+TGG | + | chr1_1:19994941-19994960 | Msa0012980:intron | 35.0% |
| GGCCTTTCGATTTAAAAGTT+TGG | - | chr1_1:19994984-19995003 | None:intergenic | 35.0% | |
| ACAACATCCTTGGAGATAAT+AGG | - | chr1_1:19995040-19995059 | None:intergenic | 35.0% | |
| ATTATCTCCAAGGATGTTGT+TGG | + | chr1_1:19995040-19995059 | Msa0012980:intron | 35.0% | |
| TATCAAACCAACAACATCCT+TGG | - | chr1_1:19995050-19995069 | None:intergenic | 35.0% | |
| ! | TGTCAATGGTGTCAAAAATG+GGG | - | chr1_1:19995081-19995100 | None:intergenic | 35.0% |
| ! | GTGTCAATGGTGTCAAAAAT+GGG | - | chr1_1:19995082-19995101 | None:intergenic | 35.0% |
| ATTGCTACTCAGAAGAAACA+TGG | + | chr1_1:19995164-19995183 | Msa0012980:intron | 35.0% | |
| !! | TCCGCTTTTGTCTTTACTAT+TGG | + | chr1_1:19995245-19995264 | Msa0012980:intron | 35.0% |
| GCCAATAGTAAAGACAAAAG+CGG | - | chr1_1:19995249-19995268 | None:intergenic | 35.0% | |
| TCAGAAGGAAATCGTGAAAA+GGG | - | chr1_1:19995288-19995307 | None:intergenic | 35.0% | |
| ATCAGAAGGAAATCGTGAAA+AGG | - | chr1_1:19995289-19995308 | None:intergenic | 35.0% | |
| TTATAGTCCTACGCATAGAA+GGG | + | chr1_1:19995424-19995443 | Msa0012980:intron | 35.0% | |
| !! | TTTGCTTTAGAGTGACGAAA+AGG | + | chr1_1:19995539-19995558 | Msa0012980:intron | 35.0% |
| ! | TCATTGCAATTAATGGATGC+AGG | - | chr1_1:19995761-19995780 | None:intergenic | 35.0% |
| AAAAGATAGGTTAAGGCTCA+TGG | + | chr1_1:19995802-19995821 | Msa0012980:intron | 35.0% | |
| AAAGATAGGTTAAGGCTCAT+GGG | + | chr1_1:19995803-19995822 | Msa0012980:intron | 35.0% | |
| GAGTGATAATTCCCAATACA+AGG | + | chr1_1:19995874-19995893 | Msa0012980:intron | 35.0% | |
| ACCACTGTATCCATGTAATT+TGG | + | chr1_1:19995998-19996017 | Msa0012980:intron | 35.0% | |
| ACCAAATTACATGGATACAG+TGG | - | chr1_1:19996002-19996021 | None:intergenic | 35.0% | |
| CAAGAAAGTAGAGACAGAAA+CGG | - | chr1_1:19996093-19996112 | None:intergenic | 35.0% | |
| GTTAAAAGATGCAGATTCTG+TGG | + | chr1_1:19996209-19996228 | Msa0012980:intron | 35.0% | |
| TACTATATCCCTATTTCCCT+TGG | + | chr1_1:19996263-19996282 | Msa0012980:intron | 35.0% | |
| ACAGATAACACAATGTCCAA+GGG | - | chr1_1:19996282-19996301 | None:intergenic | 35.0% | |
| AACAGATAACACAATGTCCA+AGG | - | chr1_1:19996283-19996302 | None:intergenic | 35.0% | |
| GGACATTGTGTTATCTGTTA+TGG | + | chr1_1:19996284-19996303 | Msa0012980:intron | 35.0% | |
| !! | CAAATGGGTTACAGAAAGAA+AGG | - | chr1_1:19996330-19996349 | None:intergenic | 35.0% |
| CTTTCTTTCTGTAACCCATT+TGG | + | chr1_1:19996328-19996347 | Msa0012980:intron | 35.0% | |
| CGTGTTCAATTCAATCCAAA+TGG | - | chr1_1:19996346-19996365 | None:intergenic | 35.0% | |
| !! | ATAAAGAGCCTTTAAAGCAG+TGG | - | chr1_1:19996399-19996418 | None:intergenic | 35.0% |
| !! | CTGCTTTAAAGGCTCTTTAT+AGG | + | chr1_1:19996399-19996418 | Msa0012980:intron | 35.0% |
| CAAAGTAGCATACATGTAAC+CGG | - | chr1_1:19996518-19996537 | None:intergenic | 35.0% | |
| ! | ATTTTGAGCAAACTAGAGAC+TGG | - | chr1_1:19996614-19996633 | None:intergenic | 35.0% |
| TGGATTATGGTGAAGGTTAA+AGG | - | chr1_1:19996652-19996671 | None:intergenic | 35.0% | |
| CCTTAAAGAACACAAGGAAA+TGG | - | chr1_1:19996687-19996706 | None:intergenic | 35.0% | |
| CCATTTCCTTGTGTTCTTTA+AGG | + | chr1_1:19996684-19996703 | Msa0012980:intron | 35.0% | |
| AGAGAACCTTAAAGAACACA+AGG | - | chr1_1:19996693-19996712 | None:intergenic | 35.0% | |
| ! | TTGCTTCAAATTGGTTCAAC+AGG | + | chr1_1:19996930-19996949 | Msa0012980:intron | 35.0% |
| !! | GTTCAACAGGTTATTTCTTC+TGG | + | chr1_1:19996943-19996962 | Msa0012980:intron | 35.0% |
| GACATTACAAGCGTTAACAA+CGG | + | chr1_1:19997115-19997134 | Msa0012980:CDS | 35.0% | |
| ACATAGGTACCATATGAGTA+TGG | + | chr1_1:19997672-19997691 | Msa0012980:intron | 35.0% | |
| !! | TTTTGTTATACTGCGTTCAG+AGG | + | chr1_1:19997721-19997740 | Msa0012980:intron | 35.0% |
| TAAGCAGCATTATGAGCTCT+TGG | + | chr1_1:19993143-19993162 | Msa0012980:CDS | 40.0% | |
| !! | GAGCTCTTGGTTGATGATAT+TGG | + | chr1_1:19993156-19993175 | Msa0012980:CDS | 40.0% |
| TGATGATATTGGCCAGATTG+AGG | + | chr1_1:19993167-19993186 | Msa0012980:CDS | 40.0% | |
| AAAAACGACGAGTCTAACCA+TGG | + | chr1_1:19993294-19993313 | Msa0012980:CDS | 40.0% | |
| GAGTCTAACCATGGAACTAA+GGG | + | chr1_1:19993303-19993322 | Msa0012980:CDS | 40.0% | |
| TTTAAGGACCAACAGATGAC+AGG | - | chr1_1:19993696-19993715 | None:intergenic | 40.0% | |
| GAGTGGTAAAAGATAGAGTG+GGG | + | chr1_1:19993756-19993775 | Msa0012980:intron | 40.0% | |
| TAAAAGATAGAGTGGGGAGA+AGG | + | chr1_1:19993762-19993781 | Msa0012980:intron | 40.0% | |
| AAAAGATAGAGTGGGGAGAA+GGG | + | chr1_1:19993763-19993782 | Msa0012980:intron | 40.0% | |
| GAACTAGCAGAGTACAGAAT+TGG | - | chr1_1:19993816-19993835 | None:intergenic | 40.0% | |
| ! | GTTTGTTGGAGTACTTTGTC+AGG | + | chr1_1:19993987-19994006 | Msa0012980:intron | 40.0% |
| ATCTCGAAATGTGTCTGTTG+TGG | + | chr1_1:19994056-19994075 | Msa0012980:intron | 40.0% | |
| TGTTCATATTCAGCTACGCT+AGG | - | chr1_1:19994130-19994149 | None:intergenic | 40.0% | |
| AGTTGACAACACTTCGTACT+GGG | - | chr1_1:19994174-19994193 | None:intergenic | 40.0% | |
| TAGTTGACAACACTTCGTAC+TGG | - | chr1_1:19994175-19994194 | None:intergenic | 40.0% | |
| !! | AGTACGAAGTGTTGTCAACT+AGG | + | chr1_1:19994174-19994193 | Msa0012980:intron | 40.0% |
| !! | GTACGAAGTGTTGTCAACTA+GGG | + | chr1_1:19994175-19994194 | Msa0012980:intron | 40.0% |
| ! | TAGGGACTACTGTGCTTTTA+GGG | + | chr1_1:19994193-19994212 | Msa0012980:intron | 40.0% |
| TCTGAACTCGATACCTAACA+TGG | + | chr1_1:19994500-19994519 | Msa0012980:intron | 40.0% | |
| TGACAACACTGCATCCAAAT+AGG | - | chr1_1:19994718-19994737 | None:intergenic | 40.0% | |
| GATGCAGTGTTGTCAAATAG+AGG | + | chr1_1:19994723-19994742 | Msa0012980:intron | 40.0% | |
| TATCAAATTTCGCTACGCTG+TGG | - | chr1_1:19994749-19994768 | None:intergenic | 40.0% | |
| ATTGGATAAGCCATCTGCTT+TGG | + | chr1_1:19994883-19994902 | Msa0012980:intron | 40.0% | |
| TTCTTATCCACCAAAGCAGA+TGG | - | chr1_1:19994896-19994915 | None:intergenic | 40.0% | |
| ! | GGGGGAAATTATTGGTAACA+AGG | - | chr1_1:19995005-19995024 | None:intergenic | 40.0% |
| ! | GGTGTCAATGGTGTCAAAAA+TGG | - | chr1_1:19995083-19995102 | None:intergenic | 40.0% |
| AATCAGCGAAGAACATCAGA+AGG | - | chr1_1:19995303-19995322 | None:intergenic | 40.0% | |
| !! | GATGTTCTTCGCTGATTTCT+AGG | + | chr1_1:19995306-19995325 | Msa0012980:intron | 40.0% |
| !! | TTCTAGGACACATTCAAGCA+CGG | + | chr1_1:19995322-19995341 | Msa0012980:intron | 40.0% |
| CTTATAGTCCTACGCATAGA+AGG | + | chr1_1:19995423-19995442 | Msa0012980:intron | 40.0% | |
| GTACGGCTCATTGCAATTAA+TGG | - | chr1_1:19995768-19995787 | None:intergenic | 40.0% | |
| TGAGCCGTACATACAGATTA+AGG | + | chr1_1:19995778-19995797 | Msa0012980:intron | 40.0% | |
| GAGCCGTACATACAGATTAA+GGG | + | chr1_1:19995779-19995798 | Msa0012980:intron | 40.0% | |
| ! | GTGTGGCTTGGAAAATTGAT+AGG | + | chr1_1:19995830-19995849 | Msa0012980:intron | 40.0% |
| AAATTGATAGGCCCGTTAAG+AGG | + | chr1_1:19995842-19995861 | Msa0012980:intron | 40.0% | |
| TCTTTCCAACAATGGGATCA+AGG | - | chr1_1:19995918-19995937 | None:intergenic | 40.0% | |
| ! | TGGATAGTCCTTTTATACCG+TGG | + | chr1_1:19996026-19996045 | Msa0012980:intron | 40.0% |
| GGAAAGATCTCACTATGAAG+TGG | + | chr1_1:19996051-19996070 | Msa0012980:intron | 40.0% | |
| CACAATGTCCAAGGGAAATA+GGG | - | chr1_1:19996274-19996293 | None:intergenic | 40.0% | |
| ACACAATGTCCAAGGGAAAT+AGG | - | chr1_1:19996275-19996294 | None:intergenic | 40.0% | |
| ACCATATGCCACTGCTTTAA+AGG | + | chr1_1:19996388-19996407 | Msa0012980:intron | 40.0% | |
| ! | TAGCTACTTGTGTTGGTGTT+CGG | - | chr1_1:19997027-19997046 | None:intergenic | 40.0% |
| ACTCGATGAACAAAGACAGA+AGG | + | chr1_1:19997077-19997096 | Msa0012980:CDS | 40.0% | |
| AGATGAACCGTTTGTTTGAC+CGG | - | chr1_1:19997170-19997189 | None:intergenic | 40.0% | |
| GATACTAAAGGTCCTCCTAT+CGG | - | chr1_1:19997286-19997305 | None:intergenic | 40.0% | |
| ! | CAGAAGTATGATGAGGCATA+GGG | - | chr1_1:19997426-19997445 | None:intergenic | 40.0% |
| CATATGGTACCTATGTCACA+AGG | - | chr1_1:19997668-19997687 | None:intergenic | 40.0% | |
| !! | AAGTGGACAATAGCTCTGAG+TGG | + | chr1_1:19993007-19993026 | Msa0012980:CDS | 45.0% |
| GACGTATCCTGAGGATGATT+CGG | + | chr1_1:19993068-19993087 | Msa0012980:CDS | 45.0% | |
| ! | TGAGGATGATTCGGATCGAT+GGG | + | chr1_1:19993077-19993096 | Msa0012980:CDS | 45.0% |
| CATAGTCTTCCCCAGTACAT+CGG | - | chr1_1:19993115-19993134 | None:intergenic | 45.0% | |
| ACAAGTCATGCTAGCGATGA+AGG | + | chr1_1:19993237-19993256 | Msa0012980:intron | 45.0% | |
| ATGCTAGCGATGAAGGAGTT+GGG | + | chr1_1:19993244-19993263 | Msa0012980:CDS | 45.0% | |
| !!! | GGTTAGACTCGTCGTTTTTG+TGG | - | chr1_1:19993293-19993312 | None:intergenic | 45.0% |
| CGAGTCTAACCATGGAACTA+AGG | + | chr1_1:19993302-19993321 | Msa0012980:CDS | 45.0% | |
| ATCTTGAGCCCTTAGTTCCA+TGG | - | chr1_1:19993314-19993333 | None:intergenic | 45.0% | |
| TGGAACTAAGGGCTCAAGAT+CGG | + | chr1_1:19993314-19993333 | Msa0012980:CDS | 45.0% | |
| ATCGGATCAAGAACGACGAA+AGG | + | chr1_1:19993332-19993351 | Msa0012980:CDS | 45.0% | |
| TCGGATCAAGAACGACGAAA+GGG | + | chr1_1:19993333-19993352 | Msa0012980:CDS | 45.0% | |
| !! | AACGACGAAAGGGTATTGCT+TGG | + | chr1_1:19993343-19993362 | Msa0012980:CDS | 45.0% |
| !! | AAAGGGTATTGCTTGGACTG+AGG | + | chr1_1:19993350-19993369 | Msa0012980:CDS | 45.0% |
| ! | CTAGGGACTACTGTGCTTTT+AGG | + | chr1_1:19994192-19994211 | Msa0012980:intron | 45.0% |
| TGCGTCAATGGAAATGGGAT+TGG | + | chr1_1:19994253-19994272 | Msa0012980:intron | 45.0% | |
| CACTGAATGAGAAAGGGTAG+CGG | + | chr1_1:19994413-19994432 | Msa0012980:intron | 45.0% | |
| ACTGAATGAGAAAGGGTAGC+GGG | + | chr1_1:19994414-19994433 | Msa0012980:intron | 45.0% | |
| ! | CATGCTATAGTTCTACAGCG+CGG | - | chr1_1:19994823-19994842 | None:intergenic | 45.0% |
| !! | CAACATGGTGATGGTGTCAA+TGG | - | chr1_1:19995095-19995114 | None:intergenic | 45.0% |
| TAGTGGCATCAACATGGTGA+TGG | - | chr1_1:19995104-19995123 | None:intergenic | 45.0% | |
| GTAGTGTAGTGGCATCAACA+TGG | - | chr1_1:19995110-19995129 | None:intergenic | 45.0% | |
| !! | ATGTGATGGTGGAGAAGAGA+TGG | - | chr1_1:19995208-19995227 | None:intergenic | 45.0% |
| TACTGTCACAGGACATGTGA+TGG | - | chr1_1:19995222-19995241 | None:intergenic | 45.0% | |
| !! | AAAGCGGAAAGTACTGTCAC+AGG | - | chr1_1:19995233-19995252 | None:intergenic | 45.0% |
| TCTCATACCCTTCTATGCGT+AGG | - | chr1_1:19995434-19995453 | None:intergenic | 45.0% | |
| TAAGGCTCATGGGTTTAGTG+TGG | + | chr1_1:19995813-19995832 | Msa0012980:intron | 45.0% | |
| TCACGTCCATTCCTCTTAAC+GGG | - | chr1_1:19995856-19995875 | None:intergenic | 45.0% | |
| CTCACGTCCATTCCTCTTAA+CGG | - | chr1_1:19995857-19995876 | None:intergenic | 45.0% | |
| TCTACGGCTGTCCTTGTATT+GGG | - | chr1_1:19995888-19995907 | None:intergenic | 45.0% | |
| TTCTACGGCTGTCCTTGTAT+TGG | - | chr1_1:19995889-19995908 | None:intergenic | 45.0% | |
| TCCAACAATGGGATCAAGGT+GGG | - | chr1_1:19995914-19995933 | None:intergenic | 45.0% | |
| TTCCAACAATGGGATCAAGG+TGG | - | chr1_1:19995915-19995934 | None:intergenic | 45.0% | |
| ! | TAGTCCTTTTATACCGTGGC+TGG | + | chr1_1:19996030-19996049 | Msa0012980:intron | 45.0% |
| CTTTCCAGCCACGGTATAAA+AGG | - | chr1_1:19996037-19996056 | None:intergenic | 45.0% | |
| TAGTGAGATCTTTCCAGCCA+CGG | - | chr1_1:19996046-19996065 | None:intergenic | 45.0% | |
| ACACGTCACACAAACCATGT+CGG | + | chr1_1:19996361-19996380 | Msa0012980:intron | 45.0% | |
| !! | GCCTTTAAAGCAGTGGCATA+TGG | - | chr1_1:19996392-19996411 | None:intergenic | 45.0% |
| ! | AGCTACTTGTGTTGGTGTTC+GGG | - | chr1_1:19997026-19997045 | None:intergenic | 45.0% |
| ! | GCATGACTAGCTACTTGTGT+TGG | - | chr1_1:19997034-19997053 | None:intergenic | 45.0% |
| GGTCAAACAAACGGTTCATC+TGG | + | chr1_1:19997169-19997188 | Msa0012980:intron | 45.0% | |
| GGTTCATCTGGAAATTCTGC+AGG | + | chr1_1:19997181-19997200 | Msa0012980:intron | 45.0% | |
| ! | TATCGGTTGTCCAATGGTAG+GGG | - | chr1_1:19997269-19997288 | None:intergenic | 45.0% |
| ! | CTATCGGTTGTCCAATGGTA+GGG | - | chr1_1:19997270-19997289 | None:intergenic | 45.0% |
| GGACCTTTAGTATCTGCTGT+TGG | + | chr1_1:19997292-19997311 | Msa0012980:CDS | 45.0% | |
| GTGCCAACAGCAGATACTAA+AGG | - | chr1_1:19997298-19997317 | None:intergenic | 45.0% | |
| ATACCATAAGCCATGTGTGG+AGG | - | chr1_1:19997340-19997359 | None:intergenic | 45.0% | |
| CGAATACCATAAGCCATGTG+TGG | - | chr1_1:19997343-19997362 | None:intergenic | 45.0% | |
| GAGGCATAGGGTATGTCATA+GGG | - | chr1_1:19997414-19997433 | None:intergenic | 45.0% | |
| TGAGGCATAGGGTATGTCAT+AGG | - | chr1_1:19997415-19997434 | None:intergenic | 45.0% | |
| ! | GCAGAAGTATGATGAGGCAT+AGG | - | chr1_1:19997427-19997446 | None:intergenic | 45.0% |
| ! | TGAGGAGCAGAAGTATGATG+AGG | - | chr1_1:19997433-19997452 | None:intergenic | 45.0% |
| ATCATACTTCTGCTCCTCAC+AGG | + | chr1_1:19997434-19997453 | Msa0012980:CDS | 45.0% | |
| CACAAGGCTGTCACATTTCA+TGG | - | chr1_1:19997652-19997671 | None:intergenic | 45.0% | |
| ! | ATGTGACAGCCTTGTGACAT+AGG | + | chr1_1:19997656-19997675 | Msa0012980:intron | 45.0% |
| !! | ACAATAGCTCTGAGTGGAGC+TGG | + | chr1_1:19993013-19993032 | Msa0012980:CDS | 50.0% |
| !! | CAATAGCTCTGAGTGGAGCT+GGG | + | chr1_1:19993014-19993033 | Msa0012980:CDS | 50.0% |
| CATCGATCCGAATCATCCTC+AGG | - | chr1_1:19993078-19993097 | None:intergenic | 50.0% | |
| ! | CTGAGGATGATTCGGATCGA+TGG | + | chr1_1:19993076-19993095 | Msa0012980:CDS | 50.0% |
| GGATCGATGGGAGAAGATTG+CGG | + | chr1_1:19993089-19993108 | Msa0012980:CDS | 50.0% | |
| AAGATTGCGGCCGATGTACT+GGG | + | chr1_1:19993102-19993121 | Msa0012980:CDS | 50.0% | |
| CGATGTACTGGGGAAGACTA+TGG | + | chr1_1:19993113-19993132 | Msa0012980:CDS | 50.0% | |
| GATATTGGCCAGATTGAGGC+TGG | + | chr1_1:19993171-19993190 | Msa0012980:CDS | 50.0% | |
| CATGCTAGCGATGAAGGAGT+TGG | + | chr1_1:19993243-19993262 | Msa0012980:CDS | 50.0% | |
| TGCTAGCGATGAAGGAGTTG+GGG | + | chr1_1:19993245-19993264 | Msa0012980:CDS | 50.0% | |
| CTTGGACTGAGGAAGAACAC+AGG | + | chr1_1:19993361-19993380 | Msa0012980:CDS | 50.0% | |
| CCAACAGATGACAGGCCATA+TGG | - | chr1_1:19993688-19993707 | None:intergenic | 50.0% | |
| CCATATGGCCTGTCATCTGT+TGG | + | chr1_1:19993685-19993704 | Msa0012980:intron | 50.0% | |
| ! | GAGTGGGGAGAAGGGAATTT+TGG | + | chr1_1:19993771-19993790 | Msa0012980:intron | 50.0% |
| TCCTCCGATGTGATCTTGTG+TGG | + | chr1_1:19993877-19993896 | Msa0012980:intron | 50.0% | |
| ACCACACAAGATCACATCGG+AGG | - | chr1_1:19993881-19993900 | None:intergenic | 50.0% | |
| TGGGTCGCGTATCACAATAG+TGG | - | chr1_1:19994155-19994174 | None:intergenic | 50.0% | |
| CGCGCTGTAGAACTATAGCA+TGG | + | chr1_1:19994821-19994840 | Msa0012980:intron | 50.0% | |
| GGATAAGCCATCTGCTTTGG+TGG | + | chr1_1:19994886-19994905 | Msa0012980:intron | 50.0% | |
| AGCTGGCATGAGTAGTGTAG+TGG | - | chr1_1:19995121-19995140 | None:intergenic | 50.0% | |
| TAGCCACATGACCACGTCTA+CGG | - | chr1_1:19995145-19995164 | None:intergenic | 50.0% | |
| TGTCACAGGACATGTGATGG+TGG | - | chr1_1:19995219-19995238 | None:intergenic | 50.0% | |
| CTCATGGGTTTAGTGTGGCT+TGG | + | chr1_1:19995818-19995837 | Msa0012980:intron | 50.0% | |
| GATAGGCCCGTTAAGAGGAA+TGG | + | chr1_1:19995847-19995866 | Msa0012980:intron | 50.0% | |
| CAACAATGGGATCAAGGTGG+GGG | - | chr1_1:19995912-19995931 | None:intergenic | 50.0% | |
| CCAACAATGGGATCAAGGTG+GGG | - | chr1_1:19995913-19995932 | None:intergenic | 50.0% | |
| GGCATATGGTGTATCCGACA+TGG | - | chr1_1:19996378-19996397 | None:intergenic | 50.0% | |
| !! | CAGGTTATTTCTTCTGGGCC+TGG | + | chr1_1:19996949-19996968 | Msa0012980:intron | 50.0% |
| ACAAGTACGGAAAAGGCGAC+TGG | + | chr1_1:19996972-19996991 | Msa0012980:CDS | 50.0% | |
| GGAGATGTTTCAACGCCTCA+AGG | + | chr1_1:19997136-19997155 | Msa0012980:CDS | 50.0% | |
| CCGTTTGTTTGACCGGTGAT+GGG | - | chr1_1:19997163-19997182 | None:intergenic | 50.0% | |
| CCCATCACCGGTCAAACAAA+CGG | + | chr1_1:19997160-19997179 | Msa0012980:CDS | 50.0% | |
| ACCGTTTGTTTGACCGGTGA+TGG | - | chr1_1:19997164-19997183 | None:intergenic | 50.0% | |
| ! | CAAGCTGTTCCATCGACTAC+CGG | + | chr1_1:19997217-19997236 | Msa0012980:CDS | 50.0% |
| ! | AAGCTGTTCCATCGACTACC+GGG | + | chr1_1:19997218-19997237 | Msa0012980:CDS | 50.0% |
| ! | CCTATCGGTTGTCCAATGGT+AGG | - | chr1_1:19997271-19997290 | None:intergenic | 50.0% |
| CCTACCATTGGACAACCGAT+AGG | + | chr1_1:19997268-19997287 | Msa0012980:CDS | 50.0% | |
| ACCATTGGACAACCGATAGG+AGG | + | chr1_1:19997271-19997290 | Msa0012980:CDS | 50.0% | |
| ! | TCCTCCTATCGGTTGTCCAA+TGG | - | chr1_1:19997275-19997294 | None:intergenic | 50.0% |
| AGGAGCGGAAAGATTCACAG+GGG | - | chr1_1:19997320-19997339 | None:intergenic | 50.0% | |
| GAGGAGCGGAAAGATTCACA+GGG | - | chr1_1:19997321-19997340 | None:intergenic | 50.0% | |
| ATAAGCCATGTGTGGAGGAG+CGG | - | chr1_1:19997335-19997354 | None:intergenic | 50.0% | |
| GTCATAGGGACCATGTTCAC+TGG | - | chr1_1:19997400-19997419 | None:intergenic | 50.0% | |
| ACAGCAGCACTTTACCTGTG+AGG | - | chr1_1:19997451-19997470 | None:intergenic | 50.0% | |
| ! | ACTTAGATTGGCTGCTGCAG+TGG | + | chr1_1:19997500-19997519 | Msa0012980:intron | 50.0% |
| GTGGAGCTGGGAGCAAGATA+AGG | + | chr1_1:19993026-19993045 | Msa0012980:CDS | 55.0% | |
| ATCCTCAGGATACGTCGCCA+AGG | - | chr1_1:19993064-19993083 | None:intergenic | 55.0% | |
| GAAGATTGCGGCCGATGTAC+TGG | + | chr1_1:19993101-19993120 | Msa0012980:CDS | 55.0% | |
| AGATTGCGGCCGATGTACTG+GGG | + | chr1_1:19993103-19993122 | Msa0012980:CDS | 55.0% | |
| GCACACAACCAGCCTCAATC+TGG | - | chr1_1:19993182-19993201 | None:intergenic | 55.0% | |
| GCTAGCGATGAAGGAGTTGG+GGG | + | chr1_1:19993246-19993265 | Msa0012980:CDS | 55.0% | |
| CTAGCGATGAAGGAGTTGGG+GGG | + | chr1_1:19993247-19993266 | Msa0012980:CDS | 55.0% | |
| TGAAGGAGTTGGGGGGAAGA+AGG | + | chr1_1:19993254-19993273 | Msa0012980:CDS | 55.0% | |
| GAAGGAGTTGGGGGGAAGAA+GGG | + | chr1_1:19993255-19993274 | Msa0012980:CDS | 55.0% | |
| GGGAAGAAGGGTGGTCACAA+TGG | + | chr1_1:19993267-19993286 | Msa0012980:CDS | 55.0% | |
| !! | GAGGGTGTTCCGCATGAACA+TGG | + | chr1_1:19994615-19994634 | Msa0012980:intron | 55.0% |
| ATGACCACGTCTACGGAAGC+TGG | - | chr1_1:19995138-19995157 | None:intergenic | 55.0% | |
| CTTCCGTAGACGTGGTCATG+TGG | + | chr1_1:19995139-19995158 | Msa0012980:intron | 55.0% | |
| GGATCAAGGTGGGGGTTCTA+CGG | - | chr1_1:19995904-19995923 | None:intergenic | 55.0% | |
| CCCCACCTTGATCCCATTGT+TGG | + | chr1_1:19995910-19995929 | Msa0012980:intron | 55.0% | |
| CTTCTGGGCCTGGACAAGTA+CGG | + | chr1_1:19996959-19996978 | Msa0012980:CDS | 55.0% | |
| GGCCTGGACAAGTACGGAAA+AGG | + | chr1_1:19996965-19996984 | Msa0012980:CDS | 55.0% | |
| ! | CGCCTTTTCCGTACTTGTCC+AGG | - | chr1_1:19996970-19996989 | None:intergenic | 55.0% |
| ! | AGCTGTTCCATCGACTACCG+GGG | + | chr1_1:19997219-19997238 | Msa0012980:CDS | 55.0% |
| ATGTATGCCGCCCCTACCAT+TGG | + | chr1_1:19997256-19997275 | Msa0012980:CDS | 55.0% | |
| GGAGGAGCGGAAAGATTCAC+AGG | - | chr1_1:19997322-19997341 | None:intergenic | 55.0% | |
| TCTTTCCGCTCCTCCACACA+TGG | + | chr1_1:19997327-19997346 | Msa0012980:CDS | 55.0% | |
| GCTCCTCCACACATGGCTTA+TGG | + | chr1_1:19997334-19997353 | Msa0012980:CDS | 55.0% | |
| GGTATTCGAGCACCAGTTCC+CGG | + | chr1_1:19997355-19997374 | Msa0012980:CDS | 55.0% | |
| GACACAACTGTACCGGGAAC+TGG | - | chr1_1:19997370-19997389 | None:intergenic | 55.0% | |
| GTTCCCGGTACAGTTGTGTC+CGG | + | chr1_1:19997370-19997389 | Msa0012980:CDS | 55.0% | |
| TGCACCGGACACAACTGTAC+CGG | - | chr1_1:19997377-19997396 | None:intergenic | 55.0% | |
| GACCATGTTCACTGGTGCAC+CGG | - | chr1_1:19997392-19997411 | None:intergenic | 55.0% | |
| TGCCTTGGCGACGTATCCTG+AGG | + | chr1_1:19993059-19993078 | Msa0012980:CDS | 60.0% | |
| CATGCCAGCTTCCGTAGACG+TGG | + | chr1_1:19995131-19995150 | Msa0012980:intron | 60.0% | |
| ACGCCTCAAGGACCCATCAC+CGG | + | chr1_1:19997148-19997167 | Msa0012980:CDS | 60.0% | |
| !! | TGACCGGTGATGGGTCCTTG+AGG | - | chr1_1:19997154-19997173 | None:intergenic | 60.0% |
| CATTCCTGCACCTGGTACCC+CGG | - | chr1_1:19997239-19997258 | None:intergenic | 60.0% | |
| GCGGCATACATTCCTGCACC+TGG | - | chr1_1:19997247-19997266 | None:intergenic | 60.0% | |
| CGGTTGTCCAATGGTAGGGG+CGG | - | chr1_1:19997266-19997285 | None:intergenic | 60.0% | |
| GCACCGGACACAACTGTACC+GGG | - | chr1_1:19997376-19997395 | None:intergenic | 60.0% | |
| GTCCGGTGCACCAGTGAACA+TGG | + | chr1_1:19997387-19997406 | Msa0012980:CDS | 60.0% | |
| GGAGTTGGGGGGAAGAAGGG+TGG | + | chr1_1:19993258-19993277 | Msa0012980:CDS | 65.0% | |
| CCTGGTACCCCGGTAGTCGA+TGG | - | chr1_1:19997229-19997248 | None:intergenic | 65.0% | |
| ! | CCATCGACTACCGGGGTACC+AGG | + | chr1_1:19997226-19997245 | Msa0012980:CDS | 65.0% |
| ! | ACTACCGGGGTACCAGGTGC+AGG | + | chr1_1:19997232-19997251 | Msa0012980:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 19992994 | 19997744 | 19992994 | ID=Msa0012980;Name=Msa0012980 |
| chr1_1 | mRNA | 19992994 | 19997744 | 19992994 | ID=Msa0012980-mRNA-1;Parent=Msa0012980;Name=Msa0012980-mRNA-1;_AED=0.07;_eAED=0.23;_QI=0|0|0|1|0|0|5|0|287 |
| chr1_1 | exon | 19992994 | 19993231 | 19992994 | ID=Msa0012980-mRNA-1:exon:7168;Parent=Msa0012980-mRNA-1 |
| chr1_1 | exon | 19993242 | 19993386 | 19993242 | ID=Msa0012980-mRNA-1:exon:7169;Parent=Msa0012980-mRNA-1 |
| chr1_1 | exon | 19996952 | 19997181 | 19996952 | ID=Msa0012980-mRNA-1:exon:7170;Parent=Msa0012980-mRNA-1 |
| chr1_1 | exon | 19997212 | 19997455 | 19997212 | ID=Msa0012980-mRNA-1:exon:7171;Parent=Msa0012980-mRNA-1 |
| chr1_1 | exon | 19997741 | 19997744 | 19997741 | ID=Msa0012980-mRNA-1:exon:7172;Parent=Msa0012980-mRNA-1 |
| chr1_1 | CDS | 19992994 | 19993231 | 19992994 | ID=Msa0012980-mRNA-1:cds;Parent=Msa0012980-mRNA-1 |
| chr1_1 | CDS | 19993242 | 19993386 | 19993242 | ID=Msa0012980-mRNA-1:cds;Parent=Msa0012980-mRNA-1 |
| chr1_1 | CDS | 19996952 | 19997181 | 19996952 | ID=Msa0012980-mRNA-1:cds;Parent=Msa0012980-mRNA-1 |
| chr1_1 | CDS | 19997212 | 19997455 | 19997212 | ID=Msa0012980-mRNA-1:cds;Parent=Msa0012980-mRNA-1 |
| chr1_1 | CDS | 19997741 | 19997744 | 19997741 | ID=Msa0012980-mRNA-1:cds;Parent=Msa0012980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
