Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0013020 | sp|Q8RYD1|REM16_ARATH | 26.282 | 312 | 186 | 13 | 15 | 289 | 18 | 322 | 4.53e-14 | 75.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0013020 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0013020 | MtrunA17_Chr1g0163101 | 74.706 | 170 | 36 | 3 | 7 | 172 | 2 | 168 | 3.42e-88 | 261 |
| Msa0013020 | MtrunA17_Chr1g0162161 | 84.892 | 139 | 18 | 1 | 37 | 172 | 3 | 141 | 1.84e-83 | 249 |
| Msa0013020 | MtrunA17_Chr1g0163131 | 45.066 | 304 | 134 | 6 | 10 | 284 | 6 | 305 | 3.58e-79 | 243 |
| Msa0013020 | MtrunA17_Chr1g0162151 | 80.952 | 147 | 27 | 1 | 170 | 316 | 3 | 148 | 1.55e-73 | 226 |
| Msa0013020 | MtrunA17_Chr1g0163251 | 43.554 | 287 | 137 | 4 | 31 | 299 | 14 | 293 | 9.51e-69 | 219 |
| Msa0013020 | MtrunA17_Chr1g0163091 | 69.935 | 153 | 42 | 2 | 170 | 320 | 3 | 153 | 4.99e-68 | 209 |
| Msa0013020 | MtrunA17_Chr1g0163081 | 73.913 | 138 | 28 | 3 | 37 | 171 | 5 | 137 | 2.46e-65 | 202 |
| Msa0013020 | MtrunA17_Chr1g0163231 | 44.326 | 282 | 133 | 8 | 22 | 288 | 9 | 281 | 3.56e-63 | 202 |
| Msa0013020 | MtrunA17_Chr1g0163261 | 40.476 | 294 | 149 | 7 | 22 | 297 | 9 | 294 | 5.87e-63 | 201 |
| Msa0013020 | MtrunA17_Chr6g0476181 | 64.286 | 154 | 30 | 3 | 37 | 170 | 1 | 149 | 6.96e-61 | 191 |
| Msa0013020 | MtrunA17_Chr1g0163181 | 37.179 | 312 | 158 | 8 | 20 | 299 | 1 | 306 | 5.14e-60 | 198 |
| Msa0013020 | MtrunA17_Chr1g0171611 | 40.439 | 319 | 138 | 11 | 8 | 310 | 2 | 284 | 1.56e-58 | 190 |
| Msa0013020 | MtrunA17_Chr1g0163121 | 70.000 | 130 | 32 | 3 | 36 | 162 | 9 | 134 | 1.02e-56 | 180 |
| Msa0013020 | MtrunA17_Chr1g0163141 | 61.635 | 159 | 39 | 3 | 36 | 172 | 9 | 167 | 1.23e-56 | 181 |
| Msa0013020 | MtrunA17_Chr1g0163201 | 37.282 | 287 | 142 | 7 | 38 | 296 | 19 | 295 | 1.77e-53 | 180 |
| Msa0013020 | MtrunA17_Chr1g0163161 | 65.891 | 129 | 40 | 2 | 50 | 174 | 1 | 129 | 3.07e-52 | 168 |
| Msa0013020 | MtrunA17_Chr4g0067431 | 27.414 | 321 | 184 | 11 | 19 | 298 | 12 | 324 | 1.01e-31 | 120 |
| Msa0013020 | MtrunA17_Chr6g0476171 | 44.681 | 141 | 71 | 3 | 164 | 297 | 6 | 146 | 4.12e-30 | 114 |
| Msa0013020 | MtrunA17_Chr3g0131891 | 28.475 | 295 | 187 | 11 | 18 | 290 | 15 | 307 | 2.52e-28 | 112 |
| Msa0013020 | MtrunA17_Chr1g0163151 | 44.094 | 127 | 66 | 1 | 170 | 296 | 3 | 124 | 1.13e-27 | 107 |
| Msa0013020 | MtrunA17_Chr8g0390841 | 29.167 | 336 | 186 | 14 | 8 | 298 | 16 | 344 | 1.22e-27 | 112 |
| Msa0013020 | MtrunA17_Chr8g0390841 | 23.920 | 301 | 171 | 11 | 22 | 287 | 242 | 519 | 5.09e-11 | 63.5 |
| Msa0013020 | MtrunA17_Chr1g0163111 | 43.966 | 116 | 65 | 0 | 177 | 292 | 2 | 117 | 4.55e-27 | 106 |
| Msa0013020 | MtrunA17_Chr1g0163221 | 27.586 | 319 | 184 | 12 | 19 | 305 | 8 | 311 | 2.86e-26 | 106 |
| Msa0013020 | MtrunA17_Chr1g0208771 | 30.769 | 299 | 162 | 13 | 38 | 298 | 13 | 304 | 5.82e-26 | 107 |
| Msa0013020 | MtrunA17_Chr1g0208771 | 25.448 | 279 | 177 | 10 | 22 | 288 | 201 | 460 | 7.13e-15 | 75.1 |
| Msa0013020 | MtrunA17_Chr3g0103171 | 28.358 | 268 | 162 | 9 | 38 | 284 | 6 | 264 | 1.78e-25 | 102 |
| Msa0013020 | MtrunA17_Chr7g0233561 | 27.815 | 302 | 182 | 11 | 18 | 286 | 14 | 312 | 2.51e-21 | 92.8 |
| Msa0013020 | MtrunA17_Chr1g0163071 | 24.510 | 306 | 180 | 7 | 37 | 298 | 1 | 299 | 5.84e-21 | 91.3 |
| Msa0013020 | MtrunA17_Chr5g0419211 | 43.478 | 92 | 51 | 1 | 208 | 298 | 11 | 102 | 1.07e-20 | 85.5 |
| Msa0013020 | MtrunA17_Chr3g0077411 | 25.676 | 296 | 179 | 9 | 5 | 284 | 245 | 515 | 1.60e-20 | 92.0 |
| Msa0013020 | MtrunA17_Chr1g0163241 | 38.596 | 114 | 63 | 3 | 38 | 144 | 23 | 136 | 9.85e-20 | 84.7 |
| Msa0013020 | MtrunA17_Chr7g0233531 | 28.302 | 265 | 173 | 9 | 37 | 286 | 1 | 263 | 1.63e-19 | 86.7 |
| Msa0013020 | MtrunA17_Chr7g0233521 | 27.957 | 279 | 156 | 11 | 37 | 286 | 1 | 263 | 1.73e-18 | 84.0 |
| Msa0013020 | MtrunA17_Chr1g0163191 | 39.623 | 106 | 60 | 2 | 31 | 132 | 14 | 119 | 1.91e-18 | 80.9 |
| Msa0013020 | MtrunA17_Chr6g0467351 | 41.489 | 94 | 51 | 3 | 19 | 108 | 12 | 105 | 5.96e-17 | 78.6 |
| Msa0013020 | MtrunA17_Chr5g0429931 | 26.255 | 259 | 156 | 9 | 38 | 287 | 11 | 243 | 6.21e-17 | 79.0 |
| Msa0013020 | MtrunA17_Chr7g0233541 | 26.667 | 285 | 169 | 11 | 37 | 286 | 1 | 280 | 6.94e-17 | 79.7 |
| Msa0013020 | MtrunA17_Chr1g0163061 | 42.553 | 94 | 50 | 2 | 19 | 108 | 12 | 105 | 1.48e-16 | 78.2 |
| Msa0013020 | MtrunA17_Chr3g0077451 | 26.336 | 262 | 151 | 10 | 36 | 289 | 10 | 237 | 3.17e-16 | 76.6 |
| Msa0013020 | MtrunA17_Chr3g0103181 | 27.397 | 292 | 178 | 13 | 12 | 284 | 2 | 278 | 1.01e-15 | 75.9 |
| Msa0013020 | MtrunA17_Chr3g0103151 | 35.659 | 129 | 70 | 5 | 20 | 142 | 10 | 131 | 3.90e-15 | 72.0 |
| Msa0013020 | MtrunA17_Chr5g0419201 | 32.824 | 131 | 78 | 4 | 22 | 142 | 16 | 146 | 4.39e-15 | 72.4 |
| Msa0013020 | MtrunA17_Chr7g0233571 | 35.772 | 123 | 73 | 3 | 21 | 137 | 9 | 131 | 8.30e-15 | 72.4 |
| Msa0013020 | MtrunA17_Chr1g0154161 | 23.759 | 282 | 184 | 10 | 15 | 273 | 23 | 296 | 1.44e-14 | 73.2 |
| Msa0013020 | MtrunA17_Chr3g0077461 | 24.306 | 288 | 170 | 9 | 5 | 284 | 220 | 467 | 2.07e-12 | 67.4 |
| Msa0013020 | MtrunA17_Chr3g0077431 | 27.434 | 226 | 122 | 10 | 72 | 289 | 7 | 198 | 1.55e-11 | 62.8 |
| Msa0013020 | MtrunA17_Chr4g0009491 | 26.009 | 223 | 135 | 7 | 21 | 237 | 224 | 422 | 1.90e-11 | 64.7 |
| Msa0013020 | MtrunA17_Chr3g0077381 | 25.561 | 223 | 129 | 7 | 21 | 237 | 246 | 437 | 4.41e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0013020 | AT4G33280.1 | 26.282 | 312 | 186 | 13 | 15 | 289 | 18 | 322 | 4.60e-15 | 75.1 |
Find 48 sgRNAs with CRISPR-Local
Find 276 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACAAATCTGGTTAGAATTT+TGG | 0.111857 | 1_1:+20147943 | None:intergenic |
| TCCCTTCTTGTTTACAAATC+TGG | 0.256431 | 1_1:+20147931 | None:intergenic |
| CACAACGTGGTGATGATATT+TGG | 0.270123 | 1_1:-20148112 | Msa0013020:CDS |
| CAGACTCATTTGGAAGTCTA+AGG | 0.283975 | 1_1:+20148153 | None:intergenic |
| TTTGGAAGTCTAAGGGATAT+TGG | 0.307140 | 1_1:+20148161 | None:intergenic |
| AGTCTGAGTGTAAAATGTTT+TGG | 0.322768 | 1_1:-20148136 | Msa0013020:CDS |
| ATGATATTTGGCTTATGAAT+TGG | 0.336273 | 1_1:-20148100 | Msa0013020:CDS |
| TCAAAGGGATTGCAAGCATT+AGG | 0.348097 | 1_1:-20147025 | Msa0013020:CDS |
| CAAAGGGATTGCAAGCATTA+GGG | 0.352259 | 1_1:-20147024 | Msa0013020:CDS |
| AAAACTTGGATTCTTATCAT+TGG | 0.358112 | 1_1:+20147203 | None:intergenic |
| TATTCTCTTGAAAACTTACT+TGG | 0.379463 | 1_1:+20147059 | None:intergenic |
| ACTCACGAAGTTGAATAGTT+TGG | 0.408216 | 1_1:+20149101 | None:intergenic |
| ACTCCAGCTGCTACACTTCA+AGG | 0.428131 | 1_1:-20147867 | Msa0013020:CDS |
| GTCAATTTAAGTTCAAAACT+TGG | 0.433190 | 1_1:+20147189 | None:intergenic |
| TGAGTGTTCTTACTAGCTCT+TGG | 0.453374 | 1_1:+20149071 | None:intergenic |
| GGCTTGATTCCTCTCTAGCT+CGG | 0.457584 | 1_1:+20146829 | None:intergenic |
| GTCCCTTGAAGTGTAGCAGC+TGG | 0.458922 | 1_1:+20147864 | None:intergenic |
| TGGCCGTGGAAGTCATGATA+AGG | 0.474120 | 1_1:-20149137 | Msa0013020:CDS |
| AACCAGATTTGTAAACAAGA+AGG | 0.479388 | 1_1:-20147933 | Msa0013020:CDS |
| GAATGGTGGTGTGCTGTTGA+AGG | 0.481500 | 1_1:+20149164 | None:intergenic |
| TATCTCTCTACAAAATTCCT+TGG | 0.487897 | 1_1:+20148203 | None:intergenic |
| AATACTTGAACGAGTTCAAA+GGG | 0.491876 | 1_1:-20147040 | Msa0013020:CDS |
| GGCCGTGGAAGTCATGATAA+GGG | 0.518786 | 1_1:-20149136 | Msa0013020:CDS |
| ACCACCATTCACCATGGCCG+TGG | 0.523585 | 1_1:-20149151 | Msa0013020:CDS |
| GTTCTATTGTGAATGGTGGT+TGG | 0.525249 | 1_1:-20146947 | Msa0013020:CDS |
| ACTTCCACGGCCATGGTGAA+TGG | 0.529893 | 1_1:+20149147 | None:intergenic |
| GCTGGAGTAGCAATATCAAT+CGG | 0.531001 | 1_1:+20147882 | None:intergenic |
| GCTTGATTCCTCTCTAGCTC+GGG | 0.531379 | 1_1:+20146830 | None:intergenic |
| GGGTTGATGAAGATAGAACT+TGG | 0.534209 | 1_1:-20147004 | Msa0013020:CDS |
| TATCATGACTTCCACGGCCA+TGG | 0.534966 | 1_1:+20149140 | None:intergenic |
| TTCTATTTCCCGAGCTAGAG+AGG | 0.537691 | 1_1:-20146838 | Msa0013020:CDS |
| TGATGAAGATAGAACTTGGA+AGG | 0.543162 | 1_1:-20147000 | Msa0013020:CDS |
| ATAGAAATATTAAAAGAAAG+AGG | 0.543614 | 1_1:+20146855 | None:intergenic |
| GAATACTTGAACGAGTTCAA+AGG | 0.559537 | 1_1:-20147041 | Msa0013020:CDS |
| ACCAGATTTGTAAACAAGAA+GGG | 0.569287 | 1_1:-20147932 | Msa0013020:CDS |
| TTTGCACGGTCGCTTAGATG+TGG | 0.573143 | 1_1:-20148071 | Msa0013020:CDS |
| AACAGAAGTTCTATTGTGAA+TGG | 0.573160 | 1_1:-20146954 | Msa0013020:CDS |
| TGTAAACAAGAAGGGAGTGA+TGG | 0.584899 | 1_1:-20147924 | Msa0013020:CDS |
| TTCCCTTATCATGACTTCCA+CGG | 0.586234 | 1_1:+20149134 | None:intergenic |
| CTCCAGCTGCTACACTTCAA+GGG | 0.587626 | 1_1:-20147866 | Msa0013020:CDS |
| AATGGTGGTGTGCTGTTGAA+GGG | 0.587983 | 1_1:+20149165 | None:intergenic |
| AGACTCATTTGGAAGTCTAA+GGG | 0.595723 | 1_1:+20148154 | None:intergenic |
| TGGTTGGAATTTATTTACCA+AGG | 0.603797 | 1_1:-20146931 | Msa0013020:CDS |
| AGAAGTTCTATTGTGAATGG+TGG | 0.647616 | 1_1:-20146951 | Msa0013020:CDS |
| TCCACGGCCATGGTGAATGG+TGG | 0.655020 | 1_1:+20149150 | None:intergenic |
| AAGGAAAATAACTTGCAAGT+CGG | 0.656533 | 1_1:-20146912 | Msa0013020:CDS |
| TGTGCATGCAGATGATACCA+AGG | 0.664773 | 1_1:-20148220 | Msa0013020:intron |
| CAGCACACCACCATTCACCA+TGG | 0.696960 | 1_1:-20149157 | Msa0013020:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAATACATAAATAAAGT+GGG | + | chr1_1:20148279-20148298 | None:intergenic | 10.0% |
| !! | TATAAAATACATAAATAAAG+TGG | + | chr1_1:20148280-20148299 | None:intergenic | 10.0% |
| !! | ATAAAATACATAAATAAAGT+GGG | + | chr1_1:20148279-20148298 | None:intergenic | 10.0% |
| !! | TATAAAATACATAAATAAAG+TGG | + | chr1_1:20148280-20148299 | None:intergenic | 10.0% |
| !!! | CAATGTATGAATTTAATTTT+AGG | + | chr1_1:20147335-20147354 | None:intergenic | 15.0% |
| !!! | AATCATAAATGCTTTTTTTT+CGG | + | chr1_1:20147614-20147633 | None:intergenic | 15.0% |
| !! | TTAAAATTGAGATAATCAAA+GGG | + | chr1_1:20148191-20148210 | None:intergenic | 15.0% |
| !! | ATTAAAATTGAGATAATCAA+AGG | + | chr1_1:20148192-20148211 | None:intergenic | 15.0% |
| !! | AGAGAAATATGTATTTAAAA+AGG | + | chr1_1:20148307-20148326 | None:intergenic | 15.0% |
| !!! | GTAAAAAGTACTATTTATTT+AGG | - | chr1_1:20148388-20148407 | Msa0013020:intron | 15.0% |
| !!! | AGAATATATATTAATTTTGC+AGG | - | chr1_1:20148618-20148637 | Msa0013020:intron | 15.0% |
| !!! | TTTGAAAATGTCTATTATTT+TGG | - | chr1_1:20148785-20148804 | Msa0013020:intron | 15.0% |
| !! | ATAGAAATATTAAAAGAAAG+AGG | + | chr1_1:20149060-20149079 | None:intergenic | 15.0% |
| !!! | CAATGTATGAATTTAATTTT+AGG | + | chr1_1:20147335-20147354 | None:intergenic | 15.0% |
| !!! | AATCATAAATGCTTTTTTTT+CGG | + | chr1_1:20147614-20147633 | None:intergenic | 15.0% |
| !! | TTAAAATTGAGATAATCAAA+GGG | + | chr1_1:20148191-20148210 | None:intergenic | 15.0% |
| !! | ATTAAAATTGAGATAATCAA+AGG | + | chr1_1:20148192-20148211 | None:intergenic | 15.0% |
| !! | AGAGAAATATGTATTTAAAA+AGG | + | chr1_1:20148307-20148326 | None:intergenic | 15.0% |
| !!! | GTAAAAAGTACTATTTATTT+AGG | - | chr1_1:20148388-20148407 | Msa0013020:intron | 15.0% |
| !!! | AGAATATATATTAATTTTGC+AGG | - | chr1_1:20148618-20148637 | Msa0013020:intron | 15.0% |
| !!! | TTTGAAAATGTCTATTATTT+TGG | - | chr1_1:20148785-20148804 | Msa0013020:intron | 15.0% |
| !! | ATAGAAATATTAAAAGAAAG+AGG | + | chr1_1:20149060-20149079 | None:intergenic | 15.0% |
| !! | ATAAAAACTACAAATCATCA+GGG | - | chr1_1:20147175-20147194 | Msa0013020:CDS | 20.0% |
| !!! | GAGATTTTCAATTTCATTAA+TGG | - | chr1_1:20147284-20147303 | Msa0013020:intron | 20.0% |
| !! | TTTGTGATATACTTAAAATG+TGG | - | chr1_1:20147463-20147482 | Msa0013020:intron | 20.0% |
| !!! | CTTTTAGTTTTTCAATACAA+AGG | - | chr1_1:20147868-20147887 | Msa0013020:CDS | 20.0% |
| !! | TGATTTATGTATCTATTTGT+AGG | - | chr1_1:20148144-20148163 | Msa0013020:CDS | 20.0% |
| !!! | TTCAATTTTGTTTCGATTAA+AGG | - | chr1_1:20148334-20148353 | Msa0013020:intron | 20.0% |
| !!! | ACTTACAAATAATTTTCCTT+GGG | + | chr1_1:20148760-20148779 | None:intergenic | 20.0% |
| !!! | AACTTACAAATAATTTTCCT+TGG | + | chr1_1:20148761-20148780 | None:intergenic | 20.0% |
| !!! | TATTAAAGTTTGTCGTTTTT+TGG | - | chr1_1:20149151-20149170 | Msa0013020:CDS | 20.0% |
| !! | ATAAAAACTACAAATCATCA+GGG | - | chr1_1:20147175-20147194 | Msa0013020:CDS | 20.0% |
| !!! | GAGATTTTCAATTTCATTAA+TGG | - | chr1_1:20147284-20147303 | Msa0013020:intron | 20.0% |
| !! | TTTGTGATATACTTAAAATG+TGG | - | chr1_1:20147463-20147482 | Msa0013020:intron | 20.0% |
| !!! | CTTTTAGTTTTTCAATACAA+AGG | - | chr1_1:20147868-20147887 | Msa0013020:CDS | 20.0% |
| !! | TGATTTATGTATCTATTTGT+AGG | - | chr1_1:20148144-20148163 | Msa0013020:CDS | 20.0% |
| !!! | TTCAATTTTGTTTCGATTAA+AGG | - | chr1_1:20148334-20148353 | Msa0013020:intron | 20.0% |
| !!! | ACTTACAAATAATTTTCCTT+GGG | + | chr1_1:20148760-20148779 | None:intergenic | 20.0% |
| !!! | AACTTACAAATAATTTTCCT+TGG | + | chr1_1:20148761-20148780 | None:intergenic | 20.0% |
| !!! | TATTAAAGTTTGTCGTTTTT+TGG | - | chr1_1:20149151-20149170 | Msa0013020:CDS | 20.0% |
| !! | ACGTATCTAGTCAAATTTTA+GGG | - | chr1_1:20147083-20147102 | Msa0013020:intron | 25.0% |
| ! | CATAAAAACTACAAATCATC+AGG | - | chr1_1:20147174-20147193 | Msa0013020:CDS | 25.0% |
| ! | GGGTAACTAATTATTTCAAA+TGG | - | chr1_1:20147247-20147266 | Msa0013020:intron | 25.0% |
| !! | AAATTTGTCATTTGATTCTC+CGG | + | chr1_1:20147368-20147387 | None:intergenic | 25.0% |
| ! | TGATATACTTAAAATGTGGA+TGG | - | chr1_1:20147467-20147486 | Msa0013020:intron | 25.0% |
| ! | GATATACTTAAAATGTGGAT+GGG | - | chr1_1:20147468-20147487 | Msa0013020:intron | 25.0% |
| ! | ATATACTTAAAATGTGGATG+GGG | - | chr1_1:20147469-20147488 | Msa0013020:intron | 25.0% |
| ! | ATGTTGAAGCAAAATATGTT+TGG | + | chr1_1:20147508-20147527 | None:intergenic | 25.0% |
| ! | AAAAATTTAGGTGGGAAAAT+GGG | + | chr1_1:20147587-20147606 | None:intergenic | 25.0% |
| !!! | TTTTTCGGTGACAAAAATTT+AGG | + | chr1_1:20147599-20147618 | None:intergenic | 25.0% |
| !! | ATGATATTTGGCTTATGAAT+TGG | - | chr1_1:20147812-20147831 | Msa0013020:intron | 25.0% |
| ! | TGAATTGGAAAAAATTTGCA+CGG | - | chr1_1:20147827-20147846 | Msa0013020:CDS | 25.0% |
| !!! | TTAGTTTTTCAATACAAAGG+AGG | - | chr1_1:20147871-20147890 | Msa0013020:CDS | 25.0% |
| !!! | TAGTTTTTCAATACAAAGGA+GGG | - | chr1_1:20147872-20147891 | Msa0013020:CDS | 25.0% |
| !! | TACAAATCTGGTTAGAATTT+TGG | + | chr1_1:20147972-20147991 | None:intergenic | 25.0% |
| ! | TGGAGTAAAAATAGAATAGA+AGG | + | chr1_1:20148221-20148240 | None:intergenic | 25.0% |
| !! | ATGTACTTTTGCATTTTGTA+TGG | + | chr1_1:20148241-20148260 | None:intergenic | 25.0% |
| !! | ATACAAAATGCAAAAGTACA+TGG | - | chr1_1:20148240-20148259 | Msa0013020:intron | 25.0% |
| ! | ATATATTCTCATCATTTGCA+AGG | + | chr1_1:20148607-20148626 | None:intergenic | 25.0% |
| ! | AAAACTTGGATTCTTATCAT+TGG | + | chr1_1:20148712-20148731 | None:intergenic | 25.0% |
| !! | GTCAATTTAAGTTCAAAACT+TGG | + | chr1_1:20148726-20148745 | None:intergenic | 25.0% |
| ! | TATTCTCTTGAAAACTTACT+TGG | + | chr1_1:20148856-20148875 | None:intergenic | 25.0% |
| !!! | AGTAACCTTGCAATTTTTTA+GGG | + | chr1_1:20149107-20149126 | None:intergenic | 25.0% |
| !!! | AAGTAACCTTGCAATTTTTT+AGG | + | chr1_1:20149108-20149127 | None:intergenic | 25.0% |
| !! | ACGTATCTAGTCAAATTTTA+GGG | - | chr1_1:20147083-20147102 | Msa0013020:intron | 25.0% |
| ! | CATAAAAACTACAAATCATC+AGG | - | chr1_1:20147174-20147193 | Msa0013020:CDS | 25.0% |
| ! | GGGTAACTAATTATTTCAAA+TGG | - | chr1_1:20147247-20147266 | Msa0013020:intron | 25.0% |
| !! | AAATTTGTCATTTGATTCTC+CGG | + | chr1_1:20147368-20147387 | None:intergenic | 25.0% |
| ! | TGATATACTTAAAATGTGGA+TGG | - | chr1_1:20147467-20147486 | Msa0013020:intron | 25.0% |
| ! | GATATACTTAAAATGTGGAT+GGG | - | chr1_1:20147468-20147487 | Msa0013020:intron | 25.0% |
| ! | ATATACTTAAAATGTGGATG+GGG | - | chr1_1:20147469-20147488 | Msa0013020:intron | 25.0% |
| ! | ATGTTGAAGCAAAATATGTT+TGG | + | chr1_1:20147508-20147527 | None:intergenic | 25.0% |
| ! | AAAAATTTAGGTGGGAAAAT+GGG | + | chr1_1:20147587-20147606 | None:intergenic | 25.0% |
| !!! | TTTTTCGGTGACAAAAATTT+AGG | + | chr1_1:20147599-20147618 | None:intergenic | 25.0% |
| !! | ATGATATTTGGCTTATGAAT+TGG | - | chr1_1:20147812-20147831 | Msa0013020:intron | 25.0% |
| ! | TGAATTGGAAAAAATTTGCA+CGG | - | chr1_1:20147827-20147846 | Msa0013020:CDS | 25.0% |
| !!! | TTAGTTTTTCAATACAAAGG+AGG | - | chr1_1:20147871-20147890 | Msa0013020:CDS | 25.0% |
| !!! | TAGTTTTTCAATACAAAGGA+GGG | - | chr1_1:20147872-20147891 | Msa0013020:CDS | 25.0% |
| !! | TACAAATCTGGTTAGAATTT+TGG | + | chr1_1:20147972-20147991 | None:intergenic | 25.0% |
| ! | TGGAGTAAAAATAGAATAGA+AGG | + | chr1_1:20148221-20148240 | None:intergenic | 25.0% |
| !! | ATGTACTTTTGCATTTTGTA+TGG | + | chr1_1:20148241-20148260 | None:intergenic | 25.0% |
| !! | ATACAAAATGCAAAAGTACA+TGG | - | chr1_1:20148240-20148259 | Msa0013020:intron | 25.0% |
| ! | ATATATTCTCATCATTTGCA+AGG | + | chr1_1:20148607-20148626 | None:intergenic | 25.0% |
| ! | AAAACTTGGATTCTTATCAT+TGG | + | chr1_1:20148712-20148731 | None:intergenic | 25.0% |
| !! | GTCAATTTAAGTTCAAAACT+TGG | + | chr1_1:20148726-20148745 | None:intergenic | 25.0% |
| ! | TATTCTCTTGAAAACTTACT+TGG | + | chr1_1:20148856-20148875 | None:intergenic | 25.0% |
| !!! | AGTAACCTTGCAATTTTTTA+GGG | + | chr1_1:20149107-20149126 | None:intergenic | 25.0% |
| !!! | AAGTAACCTTGCAATTTTTT+AGG | + | chr1_1:20149108-20149127 | None:intergenic | 25.0% |
| ! | AAAAGAAATGGTACTTGTTG+AGG | + | chr1_1:20146916-20146935 | None:intergenic | 30.0% |
| TGGTGAGGAAATAAAAGAAA+TGG | + | chr1_1:20146928-20146947 | None:intergenic | 30.0% | |
| !! | TCTTGCTTTGTTAGTTTGTT+TGG | + | chr1_1:20146948-20146967 | None:intergenic | 30.0% |
| TGATATAACAAAGCTTGAGA+GGG | + | chr1_1:20146997-20147016 | None:intergenic | 30.0% | |
| ATGATATAACAAAGCTTGAG+AGG | + | chr1_1:20146998-20147017 | None:intergenic | 30.0% | |
| GCTGAATATGTACAATGAAA+TGG | + | chr1_1:20147057-20147076 | None:intergenic | 30.0% | |
| ! | CACGTATCTAGTCAAATTTT+AGG | - | chr1_1:20147082-20147101 | Msa0013020:intron | 30.0% |
| ! | CGTATCTAGTCAAATTTTAG+GGG | - | chr1_1:20147084-20147103 | Msa0013020:intron | 30.0% |
| !! | AATTAGTTACCCATTTTTGC+TGG | + | chr1_1:20147239-20147258 | None:intergenic | 30.0% |
| ACAAATTTCTACTCATTGCT+TGG | - | chr1_1:20147380-20147399 | Msa0013020:intron | 30.0% | |
| GCAAAATATGTTTGGATCAT+GGG | + | chr1_1:20147500-20147519 | None:intergenic | 30.0% | |
| AGCAAAATATGTTTGGATCA+TGG | + | chr1_1:20147501-20147520 | None:intergenic | 30.0% | |
| ! | CATATTTTGCTTCAACATGT+TGG | - | chr1_1:20147510-20147529 | Msa0013020:intron | 30.0% |
| CAAAAATTTAGGTGGGAAAA+TGG | + | chr1_1:20147588-20147607 | None:intergenic | 30.0% | |
| ! | TAATCCAAGTTGAAACTCAT+TGG | - | chr1_1:20147659-20147678 | Msa0013020:intron | 30.0% |
| AAAACCAATGAGTTTCAACT+TGG | + | chr1_1:20147666-20147685 | None:intergenic | 30.0% | |
| TATCTCTCTACAAAATTCCT+TGG | + | chr1_1:20147712-20147731 | None:intergenic | 30.0% | |
| ! | GGAATTTTGTAGAGAGATAT+TGG | - | chr1_1:20147713-20147732 | Msa0013020:intron | 30.0% |
| ! | ATTTTACACTCAGACTCATT+TGG | + | chr1_1:20147772-20147791 | None:intergenic | 30.0% |
| ! | AGTCTGAGTGTAAAATGTTT+TGG | - | chr1_1:20147776-20147795 | Msa0013020:intron | 30.0% |
| ! | GTCTGAGTGTAAAATGTTTT+GGG | - | chr1_1:20147777-20147796 | Msa0013020:intron | 30.0% |
| AACCAGATTTGTAAACAAGA+AGG | - | chr1_1:20147979-20147998 | Msa0013020:CDS | 30.0% | |
| ACCAGATTTGTAAACAAGAA+GGG | - | chr1_1:20147980-20147999 | Msa0013020:CDS | 30.0% | |
| ! | AAAAAAGCTCTAACAAAGTG+AGG | + | chr1_1:20148420-20148439 | None:intergenic | 30.0% |
| ! | AATTTTGCAGGTACTAACAA+AGG | - | chr1_1:20148630-20148649 | Msa0013020:intron | 30.0% |
| GTATTCTCTGTTTCAATTCA+TGG | + | chr1_1:20148834-20148853 | None:intergenic | 30.0% | |
| AATACTTGAACGAGTTCAAA+GGG | - | chr1_1:20148872-20148891 | Msa0013020:intron | 30.0% | |
| AACAGAAGTTCTATTGTGAA+TGG | - | chr1_1:20148958-20148977 | Msa0013020:intron | 30.0% | |
| TGGTTGGAATTTATTTACCA+AGG | - | chr1_1:20148981-20149000 | Msa0013020:intron | 30.0% | |
| ! | AAGGAAAATAACTTGCAAGT+CGG | - | chr1_1:20149000-20149019 | Msa0013020:intron | 30.0% |
| ! | AAAAGAAATGGTACTTGTTG+AGG | + | chr1_1:20146916-20146935 | None:intergenic | 30.0% |
| TGGTGAGGAAATAAAAGAAA+TGG | + | chr1_1:20146928-20146947 | None:intergenic | 30.0% | |
| !! | TCTTGCTTTGTTAGTTTGTT+TGG | + | chr1_1:20146948-20146967 | None:intergenic | 30.0% |
| TGATATAACAAAGCTTGAGA+GGG | + | chr1_1:20146997-20147016 | None:intergenic | 30.0% | |
| ATGATATAACAAAGCTTGAG+AGG | + | chr1_1:20146998-20147017 | None:intergenic | 30.0% | |
| GCTGAATATGTACAATGAAA+TGG | + | chr1_1:20147057-20147076 | None:intergenic | 30.0% | |
| ! | CACGTATCTAGTCAAATTTT+AGG | - | chr1_1:20147082-20147101 | Msa0013020:intron | 30.0% |
| ! | CGTATCTAGTCAAATTTTAG+GGG | - | chr1_1:20147084-20147103 | Msa0013020:intron | 30.0% |
| !! | AATTAGTTACCCATTTTTGC+TGG | + | chr1_1:20147239-20147258 | None:intergenic | 30.0% |
| ACAAATTTCTACTCATTGCT+TGG | - | chr1_1:20147380-20147399 | Msa0013020:intron | 30.0% | |
| GCAAAATATGTTTGGATCAT+GGG | + | chr1_1:20147500-20147519 | None:intergenic | 30.0% | |
| AGCAAAATATGTTTGGATCA+TGG | + | chr1_1:20147501-20147520 | None:intergenic | 30.0% | |
| ! | CATATTTTGCTTCAACATGT+TGG | - | chr1_1:20147510-20147529 | Msa0013020:intron | 30.0% |
| CAAAAATTTAGGTGGGAAAA+TGG | + | chr1_1:20147588-20147607 | None:intergenic | 30.0% | |
| ! | TAATCCAAGTTGAAACTCAT+TGG | - | chr1_1:20147659-20147678 | Msa0013020:intron | 30.0% |
| AAAACCAATGAGTTTCAACT+TGG | + | chr1_1:20147666-20147685 | None:intergenic | 30.0% | |
| TATCTCTCTACAAAATTCCT+TGG | + | chr1_1:20147712-20147731 | None:intergenic | 30.0% | |
| ! | GGAATTTTGTAGAGAGATAT+TGG | - | chr1_1:20147713-20147732 | Msa0013020:intron | 30.0% |
| ! | ATTTTACACTCAGACTCATT+TGG | + | chr1_1:20147772-20147791 | None:intergenic | 30.0% |
| ! | AGTCTGAGTGTAAAATGTTT+TGG | - | chr1_1:20147776-20147795 | Msa0013020:intron | 30.0% |
| ! | GTCTGAGTGTAAAATGTTTT+GGG | - | chr1_1:20147777-20147796 | Msa0013020:intron | 30.0% |
| AACCAGATTTGTAAACAAGA+AGG | - | chr1_1:20147979-20147998 | Msa0013020:CDS | 30.0% | |
| ACCAGATTTGTAAACAAGAA+GGG | - | chr1_1:20147980-20147999 | Msa0013020:CDS | 30.0% | |
| ! | AAAAAAGCTCTAACAAAGTG+AGG | + | chr1_1:20148420-20148439 | None:intergenic | 30.0% |
| ! | AATTTTGCAGGTACTAACAA+AGG | - | chr1_1:20148630-20148649 | Msa0013020:intron | 30.0% |
| GTATTCTCTGTTTCAATTCA+TGG | + | chr1_1:20148834-20148853 | None:intergenic | 30.0% | |
| AATACTTGAACGAGTTCAAA+GGG | - | chr1_1:20148872-20148891 | Msa0013020:intron | 30.0% | |
| AACAGAAGTTCTATTGTGAA+TGG | - | chr1_1:20148958-20148977 | Msa0013020:intron | 30.0% | |
| TGGTTGGAATTTATTTACCA+AGG | - | chr1_1:20148981-20149000 | Msa0013020:intron | 30.0% | |
| ! | AAGGAAAATAACTTGCAAGT+CGG | - | chr1_1:20149000-20149019 | Msa0013020:intron | 30.0% |
| ACTCACGAAGTTGAATAGTT+TGG | + | chr1_1:20146814-20146833 | None:intergenic | 35.0% | |
| !! | CTTTGTTAGTTTGTTTGGTG+AGG | + | chr1_1:20146943-20146962 | None:intergenic | 35.0% |
| !!! | CTTGAGAGGGTTATTTTTCA+GGG | + | chr1_1:20146984-20147003 | None:intergenic | 35.0% |
| TGTACAATGAAATGGTCTAG+TGG | + | chr1_1:20147049-20147068 | None:intergenic | 35.0% | |
| GCTCATGTTTATAGCTTCTA+GGG | - | chr1_1:20147106-20147125 | Msa0013020:intron | 35.0% | |
| CTCATGTTTATAGCTTCTAG+GGG | - | chr1_1:20147107-20147126 | Msa0013020:intron | 35.0% | |
| !! | AGTGTTGATTCTCTCATTAG+TGG | - | chr1_1:20147136-20147155 | Msa0013020:intron | 35.0% |
| ! | ATTTTTGCTGGTAGACCTAA+AGG | + | chr1_1:20147227-20147246 | None:intergenic | 35.0% |
| TTTAGGTCTACCAGCAAAAA+TGG | - | chr1_1:20147226-20147245 | Msa0013020:CDS | 35.0% | |
| TTAGGTCTACCAGCAAAAAT+GGG | - | chr1_1:20147227-20147246 | Msa0013020:CDS | 35.0% | |
| CATACATTGTTCTTGACAAC+CGG | - | chr1_1:20147346-20147365 | Msa0013020:intron | 35.0% | |
| AATTTCTACTCATTGCTTGG+AGG | - | chr1_1:20147383-20147402 | Msa0013020:intron | 35.0% | |
| TCGGTGACAAAAATTTAGGT+GGG | + | chr1_1:20147595-20147614 | None:intergenic | 35.0% | |
| TTCGGTGACAAAAATTTAGG+TGG | + | chr1_1:20147596-20147615 | None:intergenic | 35.0% | |
| TTTGGAAGTCTAAGGGATAT+TGG | + | chr1_1:20147754-20147773 | None:intergenic | 35.0% | |
| AGACTCATTTGGAAGTCTAA+GGG | + | chr1_1:20147761-20147780 | None:intergenic | 35.0% | |
| ! | TCCCTTCTTGTTTACAAATC+TGG | + | chr1_1:20147984-20148003 | None:intergenic | 35.0% |
| ! | TTGACACAATTTTATGCCCA+AGG | - | chr1_1:20148741-20148760 | Msa0013020:intron | 35.0% |
| GAATACTTGAACGAGTTCAA+AGG | - | chr1_1:20148871-20148890 | Msa0013020:intron | 35.0% | |
| TGATGAAGATAGAACTTGGA+AGG | - | chr1_1:20148912-20148931 | Msa0013020:intron | 35.0% | |
| AGAAGTTCTATTGTGAATGG+TGG | - | chr1_1:20148961-20148980 | Msa0013020:intron | 35.0% | |
| !! | GACTTGCAAGTTATTTTCCT+TGG | + | chr1_1:20149001-20149020 | None:intergenic | 35.0% |
| TCAAGCCCTAAAAAATTGCA+AGG | - | chr1_1:20149099-20149118 | Msa0013020:CDS | 35.0% | |
| ACTCACGAAGTTGAATAGTT+TGG | + | chr1_1:20146814-20146833 | None:intergenic | 35.0% | |
| !! | CTTTGTTAGTTTGTTTGGTG+AGG | + | chr1_1:20146943-20146962 | None:intergenic | 35.0% |
| !!! | CTTGAGAGGGTTATTTTTCA+GGG | + | chr1_1:20146984-20147003 | None:intergenic | 35.0% |
| TGTACAATGAAATGGTCTAG+TGG | + | chr1_1:20147049-20147068 | None:intergenic | 35.0% | |
| GCTCATGTTTATAGCTTCTA+GGG | - | chr1_1:20147106-20147125 | Msa0013020:intron | 35.0% | |
| CTCATGTTTATAGCTTCTAG+GGG | - | chr1_1:20147107-20147126 | Msa0013020:intron | 35.0% | |
| !! | AGTGTTGATTCTCTCATTAG+TGG | - | chr1_1:20147136-20147155 | Msa0013020:intron | 35.0% |
| ! | ATTTTTGCTGGTAGACCTAA+AGG | + | chr1_1:20147227-20147246 | None:intergenic | 35.0% |
| TTTAGGTCTACCAGCAAAAA+TGG | - | chr1_1:20147226-20147245 | Msa0013020:CDS | 35.0% | |
| TTAGGTCTACCAGCAAAAAT+GGG | - | chr1_1:20147227-20147246 | Msa0013020:CDS | 35.0% | |
| CATACATTGTTCTTGACAAC+CGG | - | chr1_1:20147346-20147365 | Msa0013020:intron | 35.0% | |
| AATTTCTACTCATTGCTTGG+AGG | - | chr1_1:20147383-20147402 | Msa0013020:intron | 35.0% | |
| TCGGTGACAAAAATTTAGGT+GGG | + | chr1_1:20147595-20147614 | None:intergenic | 35.0% | |
| TTCGGTGACAAAAATTTAGG+TGG | + | chr1_1:20147596-20147615 | None:intergenic | 35.0% | |
| TTTGGAAGTCTAAGGGATAT+TGG | + | chr1_1:20147754-20147773 | None:intergenic | 35.0% | |
| AGACTCATTTGGAAGTCTAA+GGG | + | chr1_1:20147761-20147780 | None:intergenic | 35.0% | |
| ! | TCCCTTCTTGTTTACAAATC+TGG | + | chr1_1:20147984-20148003 | None:intergenic | 35.0% |
| ! | TTGACACAATTTTATGCCCA+AGG | - | chr1_1:20148741-20148760 | Msa0013020:intron | 35.0% |
| GAATACTTGAACGAGTTCAA+AGG | - | chr1_1:20148871-20148890 | Msa0013020:intron | 35.0% | |
| TGATGAAGATAGAACTTGGA+AGG | - | chr1_1:20148912-20148931 | Msa0013020:intron | 35.0% | |
| AGAAGTTCTATTGTGAATGG+TGG | - | chr1_1:20148961-20148980 | Msa0013020:intron | 35.0% | |
| !! | GACTTGCAAGTTATTTTCCT+TGG | + | chr1_1:20149001-20149020 | None:intergenic | 35.0% |
| TCAAGCCCTAAAAAATTGCA+AGG | - | chr1_1:20149099-20149118 | Msa0013020:CDS | 35.0% | |
| TTCCCTTATCATGACTTCCA+CGG | + | chr1_1:20146781-20146800 | None:intergenic | 40.0% | |
| ! | TGAGTGTTCTTACTAGCTCT+TGG | + | chr1_1:20146844-20146863 | None:intergenic | 40.0% |
| !!! | GCTTGAGAGGGTTATTTTTC+AGG | + | chr1_1:20146985-20147004 | None:intergenic | 40.0% |
| GGCTCATGTTTATAGCTTCT+AGG | - | chr1_1:20147105-20147124 | Msa0013020:intron | 40.0% | |
| GTAAAGCCACTAAAGCCTTT+AGG | - | chr1_1:20147209-20147228 | Msa0013020:CDS | 40.0% | |
| ACCTAAGCAAGCTAGATATG+TGG | + | chr1_1:20147438-20147457 | None:intergenic | 40.0% | |
| CAGACTCATTTGGAAGTCTA+AGG | + | chr1_1:20147762-20147781 | None:intergenic | 40.0% | |
| !! | AAAATGTTTTGGGCACAACG+TGG | - | chr1_1:20147787-20147806 | Msa0013020:intron | 40.0% |
| ! | CACAACGTGGTGATGATATT+TGG | - | chr1_1:20147800-20147819 | Msa0013020:intron | 40.0% |
| TGTAAACAAGAAGGGAGTGA+TGG | - | chr1_1:20147988-20148007 | Msa0013020:intron | 40.0% | |
| GCTGGAGTAGCAATATCAAT+CGG | + | chr1_1:20148033-20148052 | None:intergenic | 40.0% | |
| TCAAGCCAACAAAAAGTCTC+AGG | - | chr1_1:20148102-20148121 | Msa0013020:CDS | 40.0% | |
| ! | ACTTGCCTGAGACTTTTTGT+TGG | + | chr1_1:20148110-20148129 | None:intergenic | 40.0% |
| TTTGCAGGTACTAACAAAGG+AGG | - | chr1_1:20148633-20148652 | Msa0013020:intron | 40.0% | |
| TCAAAGGGATTGCAAGCATT+AGG | - | chr1_1:20148887-20148906 | Msa0013020:intron | 40.0% | |
| CAAAGGGATTGCAAGCATTA+GGG | - | chr1_1:20148888-20148907 | Msa0013020:intron | 40.0% | |
| !! | GGGTTGATGAAGATAGAACT+TGG | - | chr1_1:20148908-20148927 | Msa0013020:intron | 40.0% |
| GTTCTATTGTGAATGGTGGT+TGG | - | chr1_1:20148965-20148984 | Msa0013020:intron | 40.0% | |
| TTCCCTTATCATGACTTCCA+CGG | + | chr1_1:20146781-20146800 | None:intergenic | 40.0% | |
| ! | TGAGTGTTCTTACTAGCTCT+TGG | + | chr1_1:20146844-20146863 | None:intergenic | 40.0% |
| !!! | GCTTGAGAGGGTTATTTTTC+AGG | + | chr1_1:20146985-20147004 | None:intergenic | 40.0% |
| GGCTCATGTTTATAGCTTCT+AGG | - | chr1_1:20147105-20147124 | Msa0013020:intron | 40.0% | |
| GTAAAGCCACTAAAGCCTTT+AGG | - | chr1_1:20147209-20147228 | Msa0013020:CDS | 40.0% | |
| ACCTAAGCAAGCTAGATATG+TGG | + | chr1_1:20147438-20147457 | None:intergenic | 40.0% | |
| CAGACTCATTTGGAAGTCTA+AGG | + | chr1_1:20147762-20147781 | None:intergenic | 40.0% | |
| !! | AAAATGTTTTGGGCACAACG+TGG | - | chr1_1:20147787-20147806 | Msa0013020:intron | 40.0% |
| ! | CACAACGTGGTGATGATATT+TGG | - | chr1_1:20147800-20147819 | Msa0013020:intron | 40.0% |
| TGTAAACAAGAAGGGAGTGA+TGG | - | chr1_1:20147988-20148007 | Msa0013020:intron | 40.0% | |
| GCTGGAGTAGCAATATCAAT+CGG | + | chr1_1:20148033-20148052 | None:intergenic | 40.0% | |
| TCAAGCCAACAAAAAGTCTC+AGG | - | chr1_1:20148102-20148121 | Msa0013020:CDS | 40.0% | |
| ! | ACTTGCCTGAGACTTTTTGT+TGG | + | chr1_1:20148110-20148129 | None:intergenic | 40.0% |
| TTTGCAGGTACTAACAAAGG+AGG | - | chr1_1:20148633-20148652 | Msa0013020:intron | 40.0% | |
| TCAAAGGGATTGCAAGCATT+AGG | - | chr1_1:20148887-20148906 | Msa0013020:intron | 40.0% | |
| CAAAGGGATTGCAAGCATTA+GGG | - | chr1_1:20148888-20148907 | Msa0013020:intron | 40.0% | |
| !! | GGGTTGATGAAGATAGAACT+TGG | - | chr1_1:20148908-20148927 | Msa0013020:intron | 40.0% |
| GTTCTATTGTGAATGGTGGT+TGG | - | chr1_1:20148965-20148984 | Msa0013020:intron | 40.0% | |
| ! | AATGGTGGTGTGCTGTTGAA+GGG | + | chr1_1:20146750-20146769 | None:intergenic | 45.0% |
| ! | GGTAGACCTAAAGGCTTTAG+TGG | + | chr1_1:20147218-20147237 | None:intergenic | 45.0% |
| !! | GCCACATATCTAGCTTGCTT+AGG | - | chr1_1:20147434-20147453 | Msa0013020:intron | 45.0% |
| TGTGCATGCAGATGATACCA+AGG | - | chr1_1:20147692-20147711 | Msa0013020:intron | 45.0% | |
| ! | CAAAGGAGGCATGACTAAGA+AGG | - | chr1_1:20148647-20148666 | Msa0013020:intron | 45.0% |
| TTCTATTTCCCGAGCTAGAG+AGG | - | chr1_1:20149074-20149093 | Msa0013020:intron | 45.0% | |
| ! | AATGGTGGTGTGCTGTTGAA+GGG | + | chr1_1:20146750-20146769 | None:intergenic | 45.0% |
| ! | GGTAGACCTAAAGGCTTTAG+TGG | + | chr1_1:20147218-20147237 | None:intergenic | 45.0% |
| !! | GCCACATATCTAGCTTGCTT+AGG | - | chr1_1:20147434-20147453 | Msa0013020:intron | 45.0% |
| TGTGCATGCAGATGATACCA+AGG | - | chr1_1:20147692-20147711 | Msa0013020:intron | 45.0% | |
| ! | CAAAGGAGGCATGACTAAGA+AGG | - | chr1_1:20148647-20148666 | Msa0013020:intron | 45.0% |
| TTCTATTTCCCGAGCTAGAG+AGG | - | chr1_1:20149074-20149093 | Msa0013020:intron | 45.0% | |
| ! | GAATGGTGGTGTGCTGTTGA+AGG | + | chr1_1:20146751-20146770 | None:intergenic | 50.0% |
| TATCATGACTTCCACGGCCA+TGG | + | chr1_1:20146775-20146794 | None:intergenic | 50.0% | |
| TGGCCGTGGAAGTCATGATA+AGG | - | chr1_1:20146775-20146794 | Msa0013020:CDS | 50.0% | |
| GGCCGTGGAAGTCATGATAA+GGG | - | chr1_1:20146776-20146795 | Msa0013020:CDS | 50.0% | |
| ! | TAGTGGCTTTACCCTCGAGT+CGG | + | chr1_1:20147201-20147220 | None:intergenic | 50.0% |
| TTTGCACGGTCGCTTAGATG+TGG | - | chr1_1:20147841-20147860 | Msa0013020:CDS | 50.0% | |
| ACTCCAGCTGCTACACTTCA+AGG | - | chr1_1:20148045-20148064 | Msa0013020:CDS | 50.0% | |
| CTCCAGCTGCTACACTTCAA+GGG | - | chr1_1:20148046-20148065 | Msa0013020:CDS | 50.0% | |
| ! | GCTTGATTCCTCTCTAGCTC+GGG | + | chr1_1:20149085-20149104 | None:intergenic | 50.0% |
| GGCTTGATTCCTCTCTAGCT+CGG | + | chr1_1:20149086-20149105 | None:intergenic | 50.0% | |
| ! | GAATGGTGGTGTGCTGTTGA+AGG | + | chr1_1:20146751-20146770 | None:intergenic | 50.0% |
| TATCATGACTTCCACGGCCA+TGG | + | chr1_1:20146775-20146794 | None:intergenic | 50.0% | |
| TGGCCGTGGAAGTCATGATA+AGG | - | chr1_1:20146775-20146794 | Msa0013020:CDS | 50.0% | |
| GGCCGTGGAAGTCATGATAA+GGG | - | chr1_1:20146776-20146795 | Msa0013020:CDS | 50.0% | |
| ! | TAGTGGCTTTACCCTCGAGT+CGG | + | chr1_1:20147201-20147220 | None:intergenic | 50.0% |
| TTTGCACGGTCGCTTAGATG+TGG | - | chr1_1:20147841-20147860 | Msa0013020:CDS | 50.0% | |
| ACTCCAGCTGCTACACTTCA+AGG | - | chr1_1:20148045-20148064 | Msa0013020:CDS | 50.0% | |
| CTCCAGCTGCTACACTTCAA+GGG | - | chr1_1:20148046-20148065 | Msa0013020:CDS | 50.0% | |
| ! | GCTTGATTCCTCTCTAGCTC+GGG | + | chr1_1:20149085-20149104 | None:intergenic | 50.0% |
| GGCTTGATTCCTCTCTAGCT+CGG | + | chr1_1:20149086-20149105 | None:intergenic | 50.0% | |
| CAGCACACCACCATTCACCA+TGG | - | chr1_1:20146755-20146774 | Msa0013020:CDS | 55.0% | |
| ACTTCCACGGCCATGGTGAA+TGG | + | chr1_1:20146768-20146787 | None:intergenic | 55.0% | |
| !! | AAATCATCAGGGCCGACTCG+AGG | - | chr1_1:20147186-20147205 | Msa0013020:CDS | 55.0% |
| !! | AATCATCAGGGCCGACTCGA+GGG | - | chr1_1:20147187-20147206 | Msa0013020:CDS | 55.0% |
| GTCCCTTGAAGTGTAGCAGC+TGG | + | chr1_1:20148051-20148070 | None:intergenic | 55.0% | |
| CAGCACACCACCATTCACCA+TGG | - | chr1_1:20146755-20146774 | Msa0013020:CDS | 55.0% | |
| ACTTCCACGGCCATGGTGAA+TGG | + | chr1_1:20146768-20146787 | None:intergenic | 55.0% | |
| !! | AAATCATCAGGGCCGACTCG+AGG | - | chr1_1:20147186-20147205 | Msa0013020:CDS | 55.0% |
| !! | AATCATCAGGGCCGACTCGA+GGG | - | chr1_1:20147187-20147206 | Msa0013020:CDS | 55.0% |
| GTCCCTTGAAGTGTAGCAGC+TGG | + | chr1_1:20148051-20148070 | None:intergenic | 55.0% | |
| ACCACCATTCACCATGGCCG+TGG | - | chr1_1:20146761-20146780 | Msa0013020:CDS | 60.0% | |
| TCCACGGCCATGGTGAATGG+TGG | + | chr1_1:20146765-20146784 | None:intergenic | 60.0% | |
| ACCACCATTCACCATGGCCG+TGG | - | chr1_1:20146761-20146780 | Msa0013020:CDS | 60.0% | |
| TCCACGGCCATGGTGAATGG+TGG | + | chr1_1:20146765-20146784 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 20146743 | 20149191 | 20146743 | ID=Msa0013020;Name=Msa0013020 |
| chr1_1 | mRNA | 20146743 | 20149191 | 20146743 | ID=Msa0013020-mRNA-1;Parent=Msa0013020;Name=Msa0013020-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0|0|1|0.5|0.4|5|0|320 |
| chr1_1 | exon | 20149084 | 20149191 | 20149084 | ID=Msa0013020-mRNA-1:exon:7189;Parent=Msa0013020-mRNA-1 |
| chr1_1 | exon | 20148009 | 20148231 | 20148009 | ID=Msa0013020-mRNA-1:exon:7188;Parent=Msa0013020-mRNA-1 |
| chr1_1 | exon | 20147818 | 20147999 | 20147818 | ID=Msa0013020-mRNA-1:exon:7187;Parent=Msa0013020-mRNA-1 |
| chr1_1 | exon | 20147161 | 20147265 | 20147161 | ID=Msa0013020-mRNA-1:exon:7186;Parent=Msa0013020-mRNA-1 |
| chr1_1 | exon | 20146743 | 20147087 | 20146743 | ID=Msa0013020-mRNA-1:exon:7185;Parent=Msa0013020-mRNA-1 |
| chr1_1 | CDS | 20149084 | 20149191 | 20149084 | ID=Msa0013020-mRNA-1:cds;Parent=Msa0013020-mRNA-1 |
| chr1_1 | CDS | 20148009 | 20148231 | 20148009 | ID=Msa0013020-mRNA-1:cds;Parent=Msa0013020-mRNA-1 |
| chr1_1 | CDS | 20147818 | 20147999 | 20147818 | ID=Msa0013020-mRNA-1:cds;Parent=Msa0013020-mRNA-1 |
| chr1_1 | CDS | 20147161 | 20147265 | 20147161 | ID=Msa0013020-mRNA-1:cds;Parent=Msa0013020-mRNA-1 |
| chr1_1 | CDS | 20146743 | 20147087 | 20146743 | ID=Msa0013020-mRNA-1:cds;Parent=Msa0013020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
