Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0013430 | sp|Q8GYC1|IDD4_ARATH | 79.888 | 179 | 27 | 2 | 10 | 183 | 22 | 196 | 4.79e-103 | 308 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0013430 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0013430 | MtrunA17_Chr1g0162971 | 99.454 | 183 | 1 | 0 | 1 | 183 | 1 | 183 | 2.62e-138 | 393 |
| Msa0013430 | MtrunA17_Chr1g0163001 | 84.324 | 185 | 27 | 1 | 1 | 183 | 1 | 185 | 1.07e-113 | 333 |
| Msa0013430 | MtrunA17_Chr1g0199101 | 80.952 | 189 | 30 | 1 | 1 | 183 | 1 | 189 | 3.15e-110 | 325 |
| Msa0013430 | MtrunA17_Chr1g0210821 | 82.258 | 186 | 30 | 1 | 1 | 183 | 1 | 186 | 4.21e-106 | 315 |
| Msa0013430 | MtrunA17_Chr7g0263941 | 86.014 | 143 | 20 | 0 | 41 | 183 | 34 | 176 | 8.18e-96 | 283 |
| Msa0013430 | MtrunA17_Chr8g0342421 | 84.828 | 145 | 22 | 0 | 39 | 183 | 60 | 204 | 1.29e-94 | 284 |
| Msa0013430 | MtrunA17_Chr2g0330171 | 80.519 | 154 | 30 | 0 | 30 | 183 | 35 | 188 | 3.64e-94 | 281 |
| Msa0013430 | MtrunA17_Chr1g0181381 | 78.395 | 162 | 32 | 2 | 23 | 183 | 22 | 181 | 6.08e-94 | 281 |
| Msa0013430 | MtrunA17_Chr4g0040571 | 70.000 | 180 | 53 | 1 | 5 | 183 | 2 | 181 | 1.72e-93 | 280 |
| Msa0013430 | MtrunA17_Chr4g0029521 | 72.571 | 175 | 46 | 2 | 11 | 183 | 7 | 181 | 5.26e-93 | 279 |
| Msa0013430 | MtrunA17_Chr8g0373541 | 79.333 | 150 | 31 | 0 | 34 | 183 | 26 | 175 | 2.24e-92 | 278 |
| Msa0013430 | MtrunA17_Chr1g0191991 | 79.452 | 146 | 30 | 0 | 38 | 183 | 60 | 205 | 3.81e-90 | 273 |
| Msa0013430 | MtrunA17_Chr1g0151351 | 75.817 | 153 | 36 | 1 | 32 | 183 | 32 | 184 | 5.23e-89 | 268 |
| Msa0013430 | MtrunA17_Chr1g0185121 | 80.556 | 144 | 27 | 1 | 41 | 183 | 40 | 183 | 4.40e-88 | 265 |
| Msa0013430 | MtrunA17_Chr2g0326381 | 81.944 | 144 | 25 | 1 | 41 | 183 | 32 | 175 | 8.80e-88 | 263 |
| Msa0013430 | MtrunA17_Chr3g0141431 | 71.605 | 162 | 44 | 2 | 23 | 183 | 5 | 165 | 1.40e-85 | 257 |
| Msa0013430 | MtrunA17_Chr7g0268961 | 80.451 | 133 | 26 | 0 | 51 | 183 | 32 | 164 | 1.82e-83 | 254 |
| Msa0013430 | MtrunA17_Chr2g0324991 | 82.443 | 131 | 23 | 0 | 52 | 182 | 3 | 133 | 1.83e-83 | 243 |
| Msa0013430 | MtrunA17_Chr6g0479921 | 59.732 | 149 | 59 | 1 | 36 | 183 | 24 | 172 | 4.56e-67 | 212 |
| Msa0013430 | MtrunA17_Chr8g0375521 | 54.762 | 168 | 73 | 3 | 19 | 183 | 4 | 171 | 1.17e-66 | 209 |
| Msa0013430 | MtrunA17_Chr1g0200421 | 35.461 | 141 | 79 | 4 | 55 | 183 | 236 | 376 | 7.94e-22 | 91.7 |
| Msa0013430 | MtrunA17_Chr2g0320341 | 35.811 | 148 | 81 | 4 | 50 | 183 | 224 | 371 | 4.30e-21 | 89.0 |
| Msa0013430 | MtrunA17_Chr5g0422571 | 31.667 | 180 | 113 | 3 | 11 | 181 | 55 | 233 | 7.31e-21 | 87.0 |
| Msa0013430 | MtrunA17_Chr3g0123941 | 32.121 | 165 | 103 | 4 | 28 | 183 | 94 | 258 | 7.43e-20 | 85.1 |
| Msa0013430 | MtrunA17_Chr8g0352011 | 38.889 | 126 | 68 | 4 | 64 | 181 | 173 | 297 | 2.59e-19 | 83.6 |
| Msa0013430 | MtrunA17_Chr2g0328921 | 34.868 | 152 | 82 | 6 | 38 | 181 | 127 | 269 | 2.74e-19 | 83.2 |
| Msa0013430 | MtrunA17_Chr1g0173841 | 31.720 | 186 | 109 | 6 | 5 | 181 | 170 | 346 | 3.37e-19 | 83.6 |
| Msa0013430 | MtrunA17_Chr7g0258011 | 37.302 | 126 | 70 | 4 | 64 | 181 | 183 | 307 | 4.84e-19 | 82.8 |
| Msa0013430 | MtrunA17_Chr1g0198651 | 36.923 | 130 | 68 | 4 | 64 | 181 | 109 | 236 | 5.56e-19 | 82.0 |
| Msa0013430 | MtrunA17_Chr4g0053341 | 34.783 | 138 | 81 | 3 | 52 | 181 | 69 | 205 | 1.05e-18 | 80.5 |
| Msa0013430 | MtrunA17_Chr8g0382121 | 32.877 | 146 | 87 | 5 | 49 | 183 | 104 | 249 | 5.09e-18 | 79.7 |
| Msa0013430 | MtrunA17_Chr2g0321291 | 36.508 | 126 | 71 | 3 | 64 | 181 | 140 | 264 | 1.44e-17 | 78.6 |
| Msa0013430 | MtrunA17_Chr4g0026521 | 34.921 | 126 | 73 | 4 | 64 | 181 | 125 | 249 | 2.27e-17 | 77.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0013430 | AT2G02080.1 | 79.888 | 179 | 27 | 2 | 10 | 183 | 22 | 196 | 4.87e-104 | 308 |
| Msa0013430 | AT2G02080.4 | 79.888 | 179 | 27 | 2 | 10 | 183 | 22 | 196 | 4.87e-104 | 308 |
| Msa0013430 | AT2G02080.5 | 79.888 | 179 | 27 | 2 | 10 | 183 | 22 | 196 | 4.87e-104 | 308 |
| Msa0013430 | AT2G02080.3 | 79.888 | 179 | 27 | 2 | 10 | 183 | 22 | 196 | 4.87e-104 | 308 |
| Msa0013430 | AT1G14580.1 | 82.143 | 168 | 27 | 1 | 19 | 183 | 28 | 195 | 8.26e-103 | 303 |
| Msa0013430 | AT1G14580.2 | 82.143 | 168 | 27 | 1 | 19 | 183 | 28 | 195 | 8.26e-103 | 303 |
| Msa0013430 | AT1G14580.3 | 82.143 | 168 | 27 | 1 | 19 | 183 | 42 | 209 | 1.58e-102 | 303 |
| Msa0013430 | AT2G02070.2 | 91.667 | 144 | 12 | 0 | 40 | 183 | 51 | 194 | 3.46e-98 | 296 |
| Msa0013430 | AT2G02070.1 | 91.667 | 144 | 12 | 0 | 40 | 183 | 51 | 194 | 3.46e-98 | 296 |
| Msa0013430 | AT3G50700.1 | 73.256 | 172 | 41 | 1 | 12 | 183 | 10 | 176 | 1.59e-93 | 280 |
| Msa0013430 | AT1G55110.3 | 72.527 | 182 | 42 | 2 | 3 | 183 | 32 | 206 | 3.86e-93 | 278 |
| Msa0013430 | AT1G55110.1 | 72.527 | 182 | 42 | 2 | 3 | 183 | 32 | 206 | 3.86e-93 | 278 |
| Msa0013430 | AT1G55110.2 | 72.527 | 182 | 42 | 2 | 3 | 183 | 32 | 206 | 3.86e-93 | 278 |
| Msa0013430 | AT3G13810.4 | 83.553 | 152 | 24 | 1 | 33 | 183 | 62 | 213 | 2.93e-92 | 278 |
| Msa0013430 | AT3G13810.1 | 83.553 | 152 | 24 | 1 | 33 | 183 | 62 | 213 | 2.93e-92 | 278 |
| Msa0013430 | AT3G13810.6 | 83.553 | 152 | 24 | 1 | 33 | 183 | 43 | 194 | 3.08e-92 | 277 |
| Msa0013430 | AT3G13810.5 | 83.553 | 152 | 24 | 1 | 33 | 183 | 57 | 208 | 3.11e-92 | 278 |
| Msa0013430 | AT5G66730.1 | 79.747 | 158 | 31 | 1 | 26 | 183 | 18 | 174 | 3.95e-92 | 277 |
| Msa0013430 | AT5G03150.1 | 84.722 | 144 | 21 | 1 | 41 | 183 | 53 | 196 | 2.90e-90 | 273 |
| Msa0013430 | AT1G03840.1 | 79.452 | 146 | 30 | 0 | 38 | 183 | 38 | 183 | 1.38e-89 | 271 |
| Msa0013430 | AT3G45260.2 | 83.333 | 144 | 23 | 1 | 41 | 183 | 39 | 182 | 1.81e-89 | 269 |
| Msa0013430 | AT3G45260.1 | 83.333 | 144 | 23 | 1 | 41 | 183 | 39 | 182 | 1.81e-89 | 269 |
| Msa0013430 | AT5G60470.2 | 75.625 | 160 | 33 | 2 | 25 | 183 | 33 | 187 | 7.91e-88 | 265 |
| Msa0013430 | AT5G60470.3 | 75.625 | 160 | 33 | 2 | 25 | 183 | 29 | 183 | 8.32e-88 | 265 |
| Msa0013430 | AT5G44160.1 | 75.155 | 161 | 39 | 1 | 24 | 183 | 19 | 179 | 1.02e-87 | 265 |
| Msa0013430 | AT1G03840.2 | 79.452 | 146 | 28 | 1 | 38 | 183 | 38 | 181 | 2.10e-87 | 265 |
| Msa0013430 | AT4G02670.1 | 81.250 | 144 | 26 | 1 | 41 | 183 | 53 | 196 | 4.72e-87 | 261 |
| Msa0013430 | AT4G02670.2 | 81.250 | 144 | 26 | 1 | 41 | 183 | 55 | 198 | 4.89e-87 | 261 |
| Msa0013430 | AT2G02080.6 | 93.277 | 119 | 8 | 0 | 65 | 183 | 1 | 119 | 2.47e-84 | 256 |
| Msa0013430 | AT2G02080.2 | 93.277 | 119 | 8 | 0 | 65 | 183 | 1 | 119 | 2.47e-84 | 256 |
| Msa0013430 | AT3G13810.3 | 87.218 | 133 | 16 | 1 | 52 | 183 | 68 | 200 | 3.64e-83 | 254 |
| Msa0013430 | AT3G13810.2 | 87.218 | 133 | 16 | 1 | 52 | 183 | 82 | 214 | 4.28e-83 | 254 |
| Msa0013430 | AT5G60470.1 | 75.333 | 150 | 36 | 1 | 35 | 183 | 29 | 178 | 6.40e-83 | 252 |
| Msa0013430 | AT5G44160.2 | 81.203 | 133 | 25 | 0 | 51 | 183 | 8 | 140 | 3.25e-81 | 247 |
| Msa0013430 | AT2G01940.1 | 60.784 | 153 | 58 | 2 | 33 | 183 | 36 | 188 | 8.82e-69 | 216 |
| Msa0013430 | AT1G68130.1 | 61.333 | 150 | 56 | 2 | 36 | 183 | 36 | 185 | 1.26e-68 | 214 |
| Msa0013430 | AT1G25250.3 | 60.959 | 146 | 54 | 2 | 41 | 183 | 33 | 178 | 2.61e-67 | 210 |
| Msa0013430 | AT2G01940.3 | 60.526 | 152 | 57 | 3 | 33 | 182 | 36 | 186 | 2.97e-66 | 209 |
| Msa0013430 | AT1G25250.1 | 61.765 | 136 | 49 | 2 | 51 | 183 | 20 | 155 | 1.39e-63 | 200 |
| Msa0013430 | AT1G68130.2 | 63.636 | 99 | 34 | 2 | 87 | 183 | 1 | 99 | 1.71e-42 | 145 |
| Msa0013430 | AT2G01940.2 | 64.646 | 99 | 33 | 2 | 87 | 183 | 1 | 99 | 2.82e-42 | 145 |
| Msa0013430 | AT1G25250.2 | 62.000 | 100 | 35 | 2 | 87 | 183 | 1 | 100 | 6.18e-42 | 143 |
| Msa0013430 | AT5G22890.1 | 29.843 | 191 | 116 | 5 | 7 | 183 | 158 | 344 | 2.68e-21 | 89.7 |
| Msa0013430 | AT1G34370.3 | 33.784 | 148 | 84 | 3 | 50 | 183 | 14 | 161 | 6.54e-21 | 87.8 |
| Msa0013430 | AT1G34370.2 | 34.266 | 143 | 80 | 3 | 55 | 183 | 229 | 371 | 2.40e-20 | 87.8 |
| Msa0013430 | AT1G34370.1 | 34.266 | 143 | 80 | 3 | 55 | 183 | 229 | 371 | 2.40e-20 | 87.8 |
| Msa0013430 | AT1G51220.1 | 34.921 | 126 | 73 | 4 | 64 | 181 | 172 | 296 | 4.77e-18 | 80.5 |
| Msa0013430 | AT3G57670.1 | 36.508 | 126 | 71 | 4 | 64 | 181 | 211 | 335 | 5.19e-18 | 80.9 |
| Msa0013430 | AT3G20880.1 | 34.921 | 126 | 73 | 3 | 64 | 181 | 250 | 374 | 5.32e-18 | 80.9 |
| Msa0013430 | AT1G34790.1 | 37.302 | 126 | 70 | 4 | 64 | 181 | 139 | 263 | 3.08e-17 | 77.8 |
| Msa0013430 | AT1G08290.1 | 36.885 | 122 | 67 | 4 | 69 | 181 | 179 | 299 | 4.32e-17 | 77.8 |
| Msa0013430 | AT1G13290.1 | 35.938 | 128 | 71 | 4 | 64 | 181 | 95 | 221 | 7.72e-17 | 76.6 |
Find 32 sgRNAs with CRISPR-Local
Find 98 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACAAATAAACCTTTCTCTT+TGG | 0.255380 | 1_1:+20768349 | None:intergenic |
| GTTTGTTGCCATTAGGCTCT+TGG | 0.316327 | 1_1:+20768483 | None:intergenic |
| AGAAACTTGCTTGGTGTTCC+AGG | 0.343228 | 1_1:+20768850 | None:intergenic |
| GTATGTGAAGTGTGCCAAAA+AGG | 0.353724 | 1_1:-20768454 | Msa0013430:CDS |
| CAAATCTGTTTGTTGCCATT+AGG | 0.375978 | 1_1:+20768476 | None:intergenic |
| TTTGTTGCCATTAGGCTCTT+GGG | 0.385028 | 1_1:+20768484 | None:intergenic |
| TTCTTCTGAGGTGGTGCAGT+TGG | 0.393052 | 1_1:+20768886 | None:intergenic |
| TGGTGAACACATGTTGGTTC+TGG | 0.406411 | 1_1:+20768325 | None:intergenic |
| AGTGCTATCACTTCTGCATC+TGG | 0.408067 | 1_1:+20768511 | None:intergenic |
| AATATGCTGTTCAATCTGAT+TGG | 0.427517 | 1_1:-20768204 | Msa0013430:CDS |
| CTGCACCACCTCAGAAGAAA+AGG | 0.453842 | 1_1:-20768882 | Msa0013430:CDS |
| TTCTAAGACTTGTGGTACTA+AGG | 0.456129 | 1_1:-20768173 | Msa0013430:CDS |
| GTGTTCACCATGACCCTTCA+AGG | 0.470912 | 1_1:-20768312 | Msa0013430:CDS |
| ACTATCTCCCAAGAGCCTAA+TGG | 0.486645 | 1_1:-20768491 | Msa0013430:CDS |
| GAAGAGGACACAATTTGCCT+TGG | 0.500777 | 1_1:-20768399 | Msa0013430:CDS |
| TAACAAAGAGCCAAAGAGAA+AGG | 0.517289 | 1_1:-20768359 | Msa0013430:CDS |
| ACGTATAAGTTGTTATTACC+TGG | 0.517908 | 1_1:+20768120 | None:intergenic |
| AGGGCACTTGGTGATCTCAC+TGG | 0.527339 | 1_1:-20768292 | Msa0013430:CDS |
| CATGACCCTTCAAGGGCACT+TGG | 0.527782 | 1_1:-20768304 | Msa0013430:CDS |
| GTTGGAGTTGTTGATGATGA+AGG | 0.534181 | 1_1:+20768904 | None:intergenic |
| ACTTGCTTGGTGTTCCAGGT+TGG | 0.540376 | 1_1:+20768854 | None:intergenic |
| TTTCTTTACAATCTCACAAG+AGG | 0.544196 | 1_1:-20768962 | Msa0013430:CDS |
| AGATCACCAAGTGCCCTTGA+AGG | 0.560455 | 1_1:+20768298 | None:intergenic |
| ACTGTGGTACTCTCTTCTCC+AGG | 0.561759 | 1_1:-20768138 | Msa0013430:CDS |
| CAAGTGCCCTTGAAGGGTCA+TGG | 0.580343 | 1_1:+20768305 | None:intergenic |
| GATCACCAAGTGCCCTTGAA+GGG | 0.585984 | 1_1:+20768299 | None:intergenic |
| AAAGCTCATTCTAAGACTTG+TGG | 0.613886 | 1_1:-20768181 | Msa0013430:CDS |
| TGTTCACCATGACCCTTCAA+GGG | 0.614167 | 1_1:-20768311 | Msa0013430:CDS |
| AATTTACAACTACATAGAAG+AGG | 0.622328 | 1_1:-20768415 | Msa0013430:CDS |
| AAGAAAAGGAGAAACCAACC+TGG | 0.662135 | 1_1:-20768868 | Msa0013430:CDS |
| GGGTCATGGTGAACACATGT+TGG | 0.698022 | 1_1:+20768319 | None:intergenic |
| AAGGAGTATAGATGTGACTG+TGG | 0.709247 | 1_1:-20768154 | Msa0013430:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GATATATACTTTTTTTTTTT+TGG | - | chr1_1:20768323-20768342 | Msa0013430:CDS | 10.0% |
| !! | AGTATAAAATAATATTTGTA+AGG | + | chr1_1:20768390-20768409 | None:intergenic | 10.0% |
| !!! | TTTTTCTAATATTTTTTGTT+TGG | - | chr1_1:20768568-20768587 | Msa0013430:intron | 10.0% |
| !!! | GATATATACTTTTTTTTTTT+TGG | - | chr1_1:20768323-20768342 | Msa0013430:CDS | 10.0% |
| !! | AGTATAAAATAATATTTGTA+AGG | + | chr1_1:20768390-20768409 | None:intergenic | 10.0% |
| !!! | TTTTTCTAATATTTTTTGTT+TGG | - | chr1_1:20768568-20768587 | Msa0013430:intron | 10.0% |
| !! | ATAAAATAATATTTGTAAGG+TGG | + | chr1_1:20768387-20768406 | None:intergenic | 15.0% |
| !! | ATAAAATAATATTTGTAAGG+TGG | + | chr1_1:20768387-20768406 | None:intergenic | 15.0% |
| !! | TTATACATGTTTCAGAATTA+GGG | + | chr1_1:20768438-20768457 | None:intergenic | 20.0% |
| !! | TTTATACATGTTTCAGAATT+AGG | + | chr1_1:20768439-20768458 | None:intergenic | 20.0% |
| !! | TTATACATGTTTCAGAATTA+GGG | + | chr1_1:20768438-20768457 | None:intergenic | 20.0% |
| !! | TTTATACATGTTTCAGAATT+AGG | + | chr1_1:20768439-20768458 | None:intergenic | 20.0% |
| !!! | AAATTTTGAAGAAACTTGCT+TGG | + | chr1_1:20768285-20768304 | None:intergenic | 25.0% |
| ! | AATTTACAACTACATAGAAG+AGG | - | chr1_1:20768708-20768727 | Msa0013430:intron | 25.0% |
| !!! | AAACACTATTTTAGAAAGCA+TGG | - | chr1_1:20768861-20768880 | Msa0013430:CDS | 25.0% |
| !!! | AAATTTTGAAGAAACTTGCT+TGG | + | chr1_1:20768285-20768304 | None:intergenic | 25.0% |
| ! | AATTTACAACTACATAGAAG+AGG | - | chr1_1:20768708-20768727 | Msa0013430:intron | 25.0% |
| !!! | AAACACTATTTTAGAAAGCA+TGG | - | chr1_1:20768861-20768880 | Msa0013430:CDS | 25.0% |
| TTTCTTTACAATCTCACAAG+AGG | - | chr1_1:20768161-20768180 | Msa0013430:CDS | 30.0% | |
| TGAAAAGCTGTGTCTTTATT+AGG | - | chr1_1:20768489-20768508 | Msa0013430:CDS | 30.0% | |
| CACAAATAAACCTTTCTCTT+TGG | + | chr1_1:20768777-20768796 | None:intergenic | 30.0% | |
| AATATGCTGTTCAATCTGAT+TGG | - | chr1_1:20768919-20768938 | Msa0013430:CDS | 30.0% | |
| TTTCTTTACAATCTCACAAG+AGG | - | chr1_1:20768161-20768180 | Msa0013430:CDS | 30.0% | |
| TGAAAAGCTGTGTCTTTATT+AGG | - | chr1_1:20768489-20768508 | Msa0013430:CDS | 30.0% | |
| CACAAATAAACCTTTCTCTT+TGG | + | chr1_1:20768777-20768796 | None:intergenic | 30.0% | |
| AATATGCTGTTCAATCTGAT+TGG | - | chr1_1:20768919-20768938 | Msa0013430:CDS | 30.0% | |
| ! | CAAATCTGTTTGTTGCCATT+AGG | + | chr1_1:20768650-20768669 | None:intergenic | 35.0% |
| TATGTGAAGTGTGCCAAAAA+GGG | - | chr1_1:20768670-20768689 | Msa0013430:intron | 35.0% | |
| ! | GTTGTAAATTTTGCTCCCTT+TGG | + | chr1_1:20768698-20768717 | None:intergenic | 35.0% |
| TAACAAAGAGCCAAAGAGAA+AGG | - | chr1_1:20768764-20768783 | Msa0013430:intron | 35.0% | |
| ! | GAAAGCATGGTGAGAAAAAA+TGG | - | chr1_1:20768874-20768893 | Msa0013430:CDS | 35.0% |
| !! | AAAGCTCATTCTAAGACTTG+TGG | - | chr1_1:20768942-20768961 | Msa0013430:CDS | 35.0% |
| !! | TTCTAAGACTTGTGGTACTA+AGG | - | chr1_1:20768950-20768969 | Msa0013430:CDS | 35.0% |
| ! | CAAATCTGTTTGTTGCCATT+AGG | + | chr1_1:20768650-20768669 | None:intergenic | 35.0% |
| TATGTGAAGTGTGCCAAAAA+GGG | - | chr1_1:20768670-20768689 | Msa0013430:intron | 35.0% | |
| ! | GTTGTAAATTTTGCTCCCTT+TGG | + | chr1_1:20768698-20768717 | None:intergenic | 35.0% |
| TAACAAAGAGCCAAAGAGAA+AGG | - | chr1_1:20768764-20768783 | Msa0013430:intron | 35.0% | |
| ! | GAAAGCATGGTGAGAAAAAA+TGG | - | chr1_1:20768874-20768893 | Msa0013430:CDS | 35.0% |
| !! | AAAGCTCATTCTAAGACTTG+TGG | - | chr1_1:20768942-20768961 | Msa0013430:CDS | 35.0% |
| !! | TTCTAAGACTTGTGGTACTA+AGG | - | chr1_1:20768950-20768969 | Msa0013430:CDS | 35.0% |
| !! | GTTGGAGTTGTTGATGATGA+AGG | + | chr1_1:20768222-20768241 | None:intergenic | 40.0% |
| !! | TTTCTCCTTTTCTTCTGAGG+TGG | + | chr1_1:20768249-20768268 | None:intergenic | 40.0% |
| ! | TGGTTTCTCCTTTTCTTCTG+AGG | + | chr1_1:20768252-20768271 | None:intergenic | 40.0% |
| AAGAAAAGGAGAAACCAACC+TGG | - | chr1_1:20768255-20768274 | Msa0013430:CDS | 40.0% | |
| TTTGTTGCCATTAGGCTCTT+GGG | + | chr1_1:20768642-20768661 | None:intergenic | 40.0% | |
| GTATGTGAAGTGTGCCAAAA+AGG | - | chr1_1:20768669-20768688 | Msa0013430:intron | 40.0% | |
| !! | CTCTTTTGCTTTAGCTTCCA+AGG | + | chr1_1:20768744-20768763 | None:intergenic | 40.0% |
| ! | AAGGAGTATAGATGTGACTG+TGG | - | chr1_1:20768969-20768988 | Msa0013430:CDS | 40.0% |
| !! | GTTGGAGTTGTTGATGATGA+AGG | + | chr1_1:20768222-20768241 | None:intergenic | 40.0% |
| !! | TTTCTCCTTTTCTTCTGAGG+TGG | + | chr1_1:20768249-20768268 | None:intergenic | 40.0% |
| ! | TGGTTTCTCCTTTTCTTCTG+AGG | + | chr1_1:20768252-20768271 | None:intergenic | 40.0% |
| AAGAAAAGGAGAAACCAACC+TGG | - | chr1_1:20768255-20768274 | Msa0013430:CDS | 40.0% | |
| TTTGTTGCCATTAGGCTCTT+GGG | + | chr1_1:20768642-20768661 | None:intergenic | 40.0% | |
| GTATGTGAAGTGTGCCAAAA+AGG | - | chr1_1:20768669-20768688 | Msa0013430:intron | 40.0% | |
| !! | CTCTTTTGCTTTAGCTTCCA+AGG | + | chr1_1:20768744-20768763 | None:intergenic | 40.0% |
| ! | AAGGAGTATAGATGTGACTG+TGG | - | chr1_1:20768969-20768988 | Msa0013430:CDS | 40.0% |
| !! | AGAAACTTGCTTGGTGTTCC+AGG | + | chr1_1:20768276-20768295 | None:intergenic | 45.0% |
| AGTGCTATCACTTCTGCATC+TGG | + | chr1_1:20768615-20768634 | None:intergenic | 45.0% | |
| ACTATCTCCCAAGAGCCTAA+TGG | - | chr1_1:20768632-20768651 | Msa0013430:intron | 45.0% | |
| ! | GTTTGTTGCCATTAGGCTCT+TGG | + | chr1_1:20768643-20768662 | None:intergenic | 45.0% |
| TGTGCCAAAAAGGGTTCCAA+AGG | - | chr1_1:20768679-20768698 | Msa0013430:intron | 45.0% | |
| GTGCCAAAAAGGGTTCCAAA+GGG | - | chr1_1:20768680-20768699 | Msa0013430:intron | 45.0% | |
| GAAGAGGACACAATTTGCCT+TGG | - | chr1_1:20768724-20768743 | Msa0013430:intron | 45.0% | |
| !! | TGGTGAACACATGTTGGTTC+TGG | + | chr1_1:20768801-20768820 | None:intergenic | 45.0% |
| TGTTCACCATGACCCTTCAA+GGG | - | chr1_1:20768812-20768831 | Msa0013430:intron | 45.0% | |
| !! | AGAAACTTGCTTGGTGTTCC+AGG | + | chr1_1:20768276-20768295 | None:intergenic | 45.0% |
| AGTGCTATCACTTCTGCATC+TGG | + | chr1_1:20768615-20768634 | None:intergenic | 45.0% | |
| ACTATCTCCCAAGAGCCTAA+TGG | - | chr1_1:20768632-20768651 | Msa0013430:intron | 45.0% | |
| ! | GTTTGTTGCCATTAGGCTCT+TGG | + | chr1_1:20768643-20768662 | None:intergenic | 45.0% |
| TGTGCCAAAAAGGGTTCCAA+AGG | - | chr1_1:20768679-20768698 | Msa0013430:intron | 45.0% | |
| GTGCCAAAAAGGGTTCCAAA+GGG | - | chr1_1:20768680-20768699 | Msa0013430:intron | 45.0% | |
| GAAGAGGACACAATTTGCCT+TGG | - | chr1_1:20768724-20768743 | Msa0013430:intron | 45.0% | |
| !! | TGGTGAACACATGTTGGTTC+TGG | + | chr1_1:20768801-20768820 | None:intergenic | 45.0% |
| TGTTCACCATGACCCTTCAA+GGG | - | chr1_1:20768812-20768831 | Msa0013430:intron | 45.0% | |
| !! | TTCTTCTGAGGTGGTGCAGT+TGG | + | chr1_1:20768240-20768259 | None:intergenic | 50.0% |
| CTGCACCACCTCAGAAGAAA+AGG | - | chr1_1:20768241-20768260 | Msa0013430:CDS | 50.0% | |
| !! | ACTTGCTTGGTGTTCCAGGT+TGG | + | chr1_1:20768272-20768291 | None:intergenic | 50.0% |
| !!! | GCTCCCTTTGGAACCCTTTT+TGG | + | chr1_1:20768686-20768705 | None:intergenic | 50.0% |
| GGGTCATGGTGAACACATGT+TGG | + | chr1_1:20768807-20768826 | None:intergenic | 50.0% | |
| GTGTTCACCATGACCCTTCA+AGG | - | chr1_1:20768811-20768830 | Msa0013430:intron | 50.0% | |
| GATCACCAAGTGCCCTTGAA+GGG | + | chr1_1:20768827-20768846 | None:intergenic | 50.0% | |
| AGATCACCAAGTGCCCTTGA+AGG | + | chr1_1:20768828-20768847 | None:intergenic | 50.0% | |
| ACTGTGGTACTCTCTTCTCC+AGG | - | chr1_1:20768985-20769004 | Msa0013430:CDS | 50.0% | |
| !! | TTCTTCTGAGGTGGTGCAGT+TGG | + | chr1_1:20768240-20768259 | None:intergenic | 50.0% |
| CTGCACCACCTCAGAAGAAA+AGG | - | chr1_1:20768241-20768260 | Msa0013430:CDS | 50.0% | |
| !! | ACTTGCTTGGTGTTCCAGGT+TGG | + | chr1_1:20768272-20768291 | None:intergenic | 50.0% |
| !!! | GCTCCCTTTGGAACCCTTTT+TGG | + | chr1_1:20768686-20768705 | None:intergenic | 50.0% |
| GGGTCATGGTGAACACATGT+TGG | + | chr1_1:20768807-20768826 | None:intergenic | 50.0% | |
| GTGTTCACCATGACCCTTCA+AGG | - | chr1_1:20768811-20768830 | Msa0013430:intron | 50.0% | |
| GATCACCAAGTGCCCTTGAA+GGG | + | chr1_1:20768827-20768846 | None:intergenic | 50.0% | |
| AGATCACCAAGTGCCCTTGA+AGG | + | chr1_1:20768828-20768847 | None:intergenic | 50.0% | |
| ACTGTGGTACTCTCTTCTCC+AGG | - | chr1_1:20768985-20769004 | Msa0013430:CDS | 50.0% | |
| CAAGTGCCCTTGAAGGGTCA+TGG | + | chr1_1:20768821-20768840 | None:intergenic | 55.0% | |
| !! | CATGACCCTTCAAGGGCACT+TGG | - | chr1_1:20768819-20768838 | Msa0013430:intron | 55.0% |
| ! | AGGGCACTTGGTGATCTCAC+TGG | - | chr1_1:20768831-20768850 | Msa0013430:intron | 55.0% |
| CAAGTGCCCTTGAAGGGTCA+TGG | + | chr1_1:20768821-20768840 | None:intergenic | 55.0% | |
| !! | CATGACCCTTCAAGGGCACT+TGG | - | chr1_1:20768819-20768838 | Msa0013430:intron | 55.0% |
| ! | AGGGCACTTGGTGATCTCAC+TGG | - | chr1_1:20768831-20768850 | Msa0013430:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 20768135 | 20769010 | 20768135 | ID=Msa0013430;Name=Msa0013430 |
| chr1_1 | mRNA | 20768135 | 20769010 | 20768135 | ID=Msa0013430-mRNA-1;Parent=Msa0013430;Name=Msa0013430-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|0|0|1|1|1|2|0|183 |
| chr1_1 | exon | 20768860 | 20769010 | 20768860 | ID=Msa0013430-mRNA-1:exon:7421;Parent=Msa0013430-mRNA-1 |
| chr1_1 | exon | 20768135 | 20768535 | 20768135 | ID=Msa0013430-mRNA-1:exon:7420;Parent=Msa0013430-mRNA-1 |
| chr1_1 | CDS | 20768860 | 20769010 | 20768860 | ID=Msa0013430-mRNA-1:cds;Parent=Msa0013430-mRNA-1 |
| chr1_1 | CDS | 20768135 | 20768535 | 20768135 | ID=Msa0013430-mRNA-1:cds;Parent=Msa0013430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
