AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0013550

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0013550 MtrunA17_Chr1g0163051 97.420 659 17 0 1 659 1 659 0.0 1339
Msa0013550 MtrunA17_Chr1g0163041 81.939 526 86 3 143 659 53 578 0.0 871
Msa0013550 MtrunA17_Chr8g0368901 73.673 471 120 3 191 658 299 768 0.0 748
Msa0013550 MtrunA17_Chr8g0368901 29.614 233 131 11 2 214 39 258 2.70e-11 67.0
Msa0013550 MtrunA17_Chr8g0369301 58.512 605 194 7 103 658 152 748 0.0 717
Msa0013550 MtrunA17_Chr8g0368911 52.083 720 255 13 7 657 66 764 0.0 713
Msa0013550 MtrunA17_Chr6g0467531 57.491 574 198 12 105 646 5 564 0.0 630
Msa0013550 MtrunA17_Chr6g0467421 57.143 574 200 12 105 646 5 564 0.0 620
Msa0013550 MtrunA17_Chr6g0467381 57.491 574 198 13 105 646 5 564 0.0 620
Msa0013550 MtrunA17_Chr6g0467401 56.969 574 201 13 105 646 5 564 0.0 615
Msa0013550 MtrunA17_Chr3g0094881 53.808 604 232 11 90 659 49 639 0.0 607
Msa0013550 MtrunA17_Chr6g0467411 54.669 514 174 10 160 646 1 482 0.0 526
Msa0013550 MtrunA17_Chr2g0306961 52.692 520 160 11 153 646 4 463 1.62e-177 513
Msa0013550 MtrunA17_Chr7g0255181 41.616 495 266 13 158 646 203 680 5.73e-113 355
Msa0013550 MtrunA17_Chr3g0080761 37.112 547 309 14 123 645 98 633 1.30e-108 342
Msa0013550 MtrunA17_Chr5g0399801 38.569 503 282 12 158 651 581 1065 8.41e-107 348
Msa0013550 MtrunA17_Chr8g0354821 39.960 503 279 14 158 647 167 659 1.89e-105 335
Msa0013550 MtrunA17_Chr4g0003501 34.831 623 323 19 57 649 360 929 1.10e-101 332
Msa0013550 MtrunA17_Chr4g0003511 37.302 504 286 11 158 651 545 1028 3.84e-99 327
Msa0013550 MtrunA17_Chr6g0476111 38.716 483 268 13 189 651 196 670 2.59e-90 295
Msa0013550 MtrunA17_Chr7g0252211 38.763 485 266 14 189 651 258 733 1.60e-88 292
Msa0013550 MtrunA17_Chr6g0476121 38.302 483 270 13 189 651 145 619 1.73e-87 286
Msa0013550 MtrunA17_Chr1g0170651 32.341 504 285 12 157 644 57 520 6.19e-58 205
Msa0013550 MtrunA17_Chr7g0232811 29.814 483 242 14 192 651 107 515 2.25e-55 197
Msa0013550 MtrunA17_Chr7g0232981 30.022 463 246 11 192 652 107 493 1.02e-49 181
Msa0013550 MtrunA17_Chr7g0232841 28.247 485 231 17 192 650 110 503 2.78e-44 166
Msa0013550 MtrunA17_Chr5g0448331 37.179 156 85 3 217 366 267 415 3.51e-19 92.0
Msa0013550 MtrunA17_Chr1g0190311 27.044 318 151 12 396 652 327 624 8.99e-19 90.5
Msa0013550 MtrunA17_Chr1g0183321 24.839 310 163 10 396 650 430 724 1.81e-18 89.7
Msa0013550 MtrunA17_Chr4g0075321 28.804 184 117 3 463 644 869 1040 4.93e-18 89.0
Msa0013550 MtrunA17_Chr5g0403241 29.832 238 130 7 442 658 1274 1495 7.45e-18 88.6
Msa0013550 MtrunA17_Chr8g0373821 29.508 183 115 4 463 644 346 515 9.89e-18 87.0
Msa0013550 MtrunA17_Chr8g0389931 34.615 156 89 3 217 366 261 409 1.38e-17 87.0
Msa0013550 MtrunA17_Chr6g0460921 27.027 222 135 6 440 659 215 411 4.54e-17 84.0
Msa0013550 MtrunA17_Chr7g0232861 35.333 150 81 5 192 338 106 242 4.78e-17 81.3
Msa0013550 MtrunA17_Chr7g0262001 24.679 312 151 13 396 646 388 676 1.58e-15 80.5
Msa0013550 MtrunA17_Chr7g0232761 34.591 159 84 6 192 345 123 266 6.57e-14 72.8
Msa0013550 MtrunA17_Chr3g0143561 32.000 150 91 3 217 366 187 325 7.60e-14 73.9
Msa0013550 MtrunA17_Chr7g0232751 43.077 65 37 0 587 651 31 95 1.81e-12 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0013550 AT4G13460.1 54.834 662 270 10 10 659 6 650 0.0 709
Msa0013550 AT4G13460.2 54.834 662 270 10 10 659 6 650 0.0 709
Msa0013550 AT2G33290.1 52.221 653 268 10 21 659 29 651 0.0 672
Msa0013550 AT2G33290.3 52.221 653 268 10 21 659 29 651 0.0 672
Msa0013550 AT2G33290.4 52.221 653 268 10 21 659 29 651 0.0 672
Msa0013550 AT2G33290.2 52.221 653 268 10 21 659 29 651 0.0 672
Msa0013550 AT5G04940.2 38.889 504 277 12 158 647 155 641 1.06e-103 330
Msa0013550 AT5G04940.1 38.889 504 277 12 158 647 155 641 1.06e-103 330
Msa0013550 AT1G73100.1 40.215 465 255 12 193 647 189 640 1.19e-99 319
Msa0013550 AT2G22740.2 36.328 512 293 9 158 651 270 766 7.12e-97 315
Msa0013550 AT2G22740.1 36.328 512 293 9 158 651 270 766 7.12e-97 315
Msa0013550 AT2G35160.5 36.260 524 274 12 145 651 254 734 4.14e-96 312
Msa0013550 AT2G35160.2 36.260 524 274 12 145 651 290 770 9.41e-96 312
Msa0013550 AT2G35160.3 36.260 524 274 12 145 651 290 770 9.41e-96 312
Msa0013550 AT2G35160.1 36.260 524 274 12 145 651 290 770 9.41e-96 312
Msa0013550 AT2G35160.4 36.260 524 274 12 145 651 290 770 9.41e-96 312
Msa0013550 AT5G13960.1 36.253 491 273 16 189 653 126 602 1.13e-87 286
Msa0013550 AT5G13960.2 36.383 470 262 14 209 653 11 468 1.40e-86 280
Msa0013550 AT1G17770.1 37.124 466 269 12 194 647 209 662 1.74e-80 269
Msa0013550 AT2G24740.1 36.454 502 283 14 158 654 262 732 1.43e-76 260
Msa0013550 AT5G47150.1 33.639 327 194 9 45 366 16 324 3.18e-38 145
Msa0013550 AT5G47160.1 37.674 215 122 6 151 362 202 407 1.11e-28 119
Msa0013550 AT5G47160.3 37.674 215 122 6 151 362 202 407 1.11e-28 119
Msa0013550 AT5G47160.2 37.674 215 122 6 151 362 202 407 1.11e-28 119
Msa0013550 AT2G05900.1 36.257 171 104 3 254 424 26 191 3.17e-21 95.5
Msa0013550 AT2G23740.1 32.632 190 104 6 463 645 1177 1349 3.62e-21 99.4
Msa0013550 AT2G23740.3 32.632 190 104 6 463 645 1184 1356 4.24e-21 99.4
Msa0013550 AT2G23740.6 32.632 190 104 6 463 645 1184 1356 4.24e-21 99.4
Msa0013550 AT2G23740.2 32.632 190 104 6 463 645 1184 1356 4.24e-21 99.4
Msa0013550 AT3G03750.2 29.808 208 120 6 439 645 141 323 1.94e-18 87.8
Msa0013550 AT1G57820.1 35.669 157 87 4 217 366 277 426 5.88e-18 88.6
Msa0013550 AT1G57820.3 35.669 157 87 4 217 366 277 426 5.88e-18 88.6
Msa0013550 AT1G57820.2 35.065 154 89 4 217 366 277 423 7.80e-17 84.7
Msa0013550 AT3G04380.1 23.856 306 163 11 396 646 146 436 1.08e-16 84.0
Msa0013550 AT3G04380.3 23.856 306 163 11 396 646 130 420 1.10e-16 84.0
Msa0013550 AT3G04380.2 23.856 306 163 11 396 646 119 409 1.16e-16 83.6
Msa0013550 AT3G04380.4 23.856 306 163 11 396 646 146 436 1.26e-16 83.6
Msa0013550 AT3G04380.5 23.856 306 163 11 396 646 103 393 1.33e-16 83.2
Msa0013550 AT3G04380.6 23.856 306 163 11 396 646 119 409 1.53e-16 83.2
Msa0013550 AT1G04050.2 25.076 331 160 11 384 646 387 697 6.65e-15 79.0
Msa0013550 AT1G04050.1 25.076 331 160 11 384 646 387 697 6.65e-15 79.0
Msa0013550 AT5G39550.1 33.121 157 91 4 217 366 262 411 6.72e-15 78.6
Msa0013550 AT1G04050.3 25.076 331 160 11 384 646 283 593 1.04e-14 78.2
Msa0013550 AT2G23740.4 33.108 148 75 6 463 603 1184 1314 1.40e-14 78.2
Msa0013550 AT2G23740.5 33.108 148 75 6 463 603 1184 1314 1.40e-14 78.2
Msa0013550 AT1G66040.1 33.566 143 82 3 217 353 262 397 7.99e-14 75.1
Msa0013550 AT1G66050.1 32.867 143 83 2 217 353 262 397 9.35e-14 75.1
Msa0013550 AT5G43990.16 27.011 174 109 4 475 646 503 660 4.10e-13 73.2
Msa0013550 AT5G43990.5 27.011 174 109 4 475 646 503 660 4.10e-13 73.2
Msa0013550 AT5G43990.17 27.011 174 109 4 475 646 503 660 4.10e-13 73.2
Msa0013550 AT5G43990.14 27.011 174 109 4 475 646 503 660 4.10e-13 73.2
Msa0013550 AT5G43990.15 27.011 174 109 4 475 646 526 683 4.34e-13 73.2
Msa0013550 AT5G43990.10 27.011 174 109 4 475 646 526 683 4.34e-13 73.2
Msa0013550 AT5G43990.3 27.011 174 109 4 475 646 523 680 5.10e-13 72.8
Msa0013550 AT5G43990.11 27.011 174 109 4 475 646 523 680 5.10e-13 72.8
Msa0013550 AT5G43990.1 27.011 174 109 4 475 646 523 680 5.10e-13 72.8
Msa0013550 AT5G43990.4 27.011 174 109 4 475 646 523 680 5.10e-13 72.8
Msa0013550 AT5G43990.7 27.011 174 109 4 475 646 434 591 5.38e-13 72.8
Msa0013550 AT5G43990.9 27.011 174 109 4 475 646 546 703 5.88e-13 72.8
Msa0013550 AT5G43990.2 27.011 174 109 4 475 646 546 703 5.88e-13 72.8
Msa0013550 AT5G43990.8 27.011 174 109 4 475 646 454 611 7.10e-13 72.4
Msa0013550 AT5G43990.12 27.011 174 109 4 475 646 454 611 7.10e-13 72.4
Msa0013550 AT5G43990.6 27.011 174 109 4 475 646 454 611 7.10e-13 72.4
Msa0013550 AT5G43990.13 27.011 174 109 4 475 646 454 611 7.10e-13 72.4
Msa0013550 AT1G57800.2 31.646 158 93 5 217 366 289 439 2.96e-12 70.5
Msa0013550 AT1G57800.1 32.857 140 80 4 217 349 289 421 7.91e-12 68.9

Find 183 sgRNAs with CRISPR-Local

Find 430 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTACTAGTGTGATTGTTTC+TGG 0.079078 1_1:+20997161 Msa0013550:CDS
CTAGGTTCAGACTTAGATTT+AGG 0.191105 1_1:-20996539 None:intergenic
TTAGATTTAGGTTTAGATTT+TGG 0.203811 1_1:-20996527 None:intergenic
CGGAACCGTGTTACGCAAAA+AGG 0.220274 1_1:+20997863 Msa0013550:CDS
TGGTGGTGGTTGGTTGTTCT+AGG 0.228407 1_1:-20996578 None:intergenic
ACCGGATCAGCGTCAGTTTC+GGG 0.257025 1_1:+20996842 Msa0013550:CDS
TTATGATTCGGTTCGTGTTT+TGG 0.278166 1_1:+20996890 Msa0013550:CDS
AGGATTGTTGGCGCTATTCC+TGG 0.287674 1_1:+20997017 Msa0013550:CDS
CGGCATCGACGCCGCTAAAA+TGG 0.289437 1_1:+20996614 Msa0013550:CDS
AGAAGCCCGCTTTGACTATA+AGG 0.293128 1_1:-20997779 None:intergenic
GGGAGACTGGTTGGGGAGTT+AGG 0.302694 1_1:+20997918 Msa0013550:CDS
TACCGGATCAGCGTCAGTTT+CGG 0.304741 1_1:+20996841 Msa0013550:CDS
GTATCCATCAATTCCTCCTT+TGG 0.310358 1_1:+20998123 Msa0013550:CDS
AATGACTGATGTTGGGTTAC+CGG 0.314240 1_1:+20996824 Msa0013550:CDS
AGAGAGTTCAGCCTTGATTA+TGG 0.322787 1_1:+20998301 Msa0013550:CDS
GGTTGGAAGTGTTTAGATCT+AGG 0.329004 1_1:+20997897 Msa0013550:CDS
GCAAGCCACATTCCTCATTC+TGG 0.346436 1_1:-20998164 None:intergenic
GATGTTGGTAAAAGTGGTTT+TGG 0.352738 1_1:+20997428 Msa0013550:CDS
GTATGGAGCGTGTCGGTATA+AGG 0.360786 1_1:+20997588 Msa0013550:CDS
GAAGGTACTTCTTCGACTTC+GGG 0.363101 1_1:+20997356 Msa0013550:CDS
GGCTGGGATTGATTATTTGC+CGG 0.363483 1_1:+20997109 Msa0013550:CDS
TTGTGTGTGGTTGGTTTACA+TGG 0.365764 1_1:+20997077 Msa0013550:CDS
ATAGCTCTTGCATTTGCATC+TGG 0.371282 1_1:-20996711 None:intergenic
TTTAAGTTATGGAGGATTGA+TGG 0.371705 1_1:+20997461 Msa0013550:CDS
GCCGACGCCGGCGCCGGTGG+TGG 0.372616 1_1:-20996595 None:intergenic
TAGATCTAGGGAGACTGGTT+GGG 0.375144 1_1:+20997910 Msa0013550:CDS
GCTGATGGAAATGTTTGGTT+TGG 0.379538 1_1:-20996405 None:intergenic
GTTTGGATTATGAGGATTCA+TGG 0.380762 1_1:-20996388 None:intergenic
TTCGAACAGGTGGACGGAAT+GGG 0.394764 1_1:+20998060 Msa0013550:CDS
TGAAGGTACTTCTTCGACTT+CGG 0.398545 1_1:+20997355 Msa0013550:CDS
ATGTTTATGATGGTTTGTAT+AGG 0.399652 1_1:+20997387 Msa0013550:CDS
GTCAGTTTCGGGACGTTGTC+AGG 0.402872 1_1:+20996853 Msa0013550:CDS
GACGAGGATGGTTTATGATT+CGG 0.406490 1_1:+20996878 Msa0013550:CDS
TGCATTATGGAATCGAGGTT+AGG 0.408570 1_1:+20997312 Msa0013550:CDS
TCATCCCGAGGCTCTTGCTT+CGG 0.409571 1_1:-20996459 None:intergenic
TAAATGCACCAGCTTGAATA+AGG 0.411317 1_1:-20997949 None:intergenic
TGTATAGGATTATTGAATGC+TGG 0.416427 1_1:+20997402 Msa0013550:CDS
GTCGATGCCGACGCCGGCGC+CGG 0.417151 1_1:-20996601 None:intergenic
ATGGAGAGGAGTATGCATTA+TGG 0.418822 1_1:+20997299 Msa0013550:CDS
GTAGTTGTCCGCCTCATTGT+CGG 0.419366 1_1:+20997843 Msa0013550:CDS
ACAAACTGAACCATCACATT+AGG 0.419575 1_1:-20998208 None:intergenic
GCTATTCCTGGGATTTGTAT+TGG 0.423649 1_1:+20997029 Msa0013550:CDS
AAATCCAAAGGAGGAATTGA+TGG 0.424705 1_1:-20998127 None:intergenic
CATTTATATGCGAGTACACC+GGG 0.425456 1_1:+20997966 Msa0013550:CDS
TACAATAATGCCCCTCCTGC+TGG 0.432895 1_1:+20996762 Msa0013550:CDS
TCTTGATATTTCCAAGGGTA+TGG 0.441501 1_1:+20997571 Msa0013550:CDS
AATCGCGATAAGAGGATTGT+TGG 0.444881 1_1:+20997005 Msa0013550:CDS
CTCTTGATGTGTCCAGAATG+AGG 0.451204 1_1:+20998152 Msa0013550:CDS
GGTAAGGTTTATGTTTATGA+TGG 0.452304 1_1:+20997377 Msa0013550:CDS
GATTGATGGTCAAGCTAAGA+TGG 0.453129 1_1:+20997475 Msa0013550:CDS
GGGGTGCTGATGGAAATGTT+TGG 0.454594 1_1:-20996410 None:intergenic
GTTGGAAGTGTTTAGATCTA+GGG 0.456470 1_1:+20997898 Msa0013550:CDS
GTGTTTAGATCTAGGGAGAC+TGG 0.456502 1_1:+20997905 Msa0013550:CDS
GGGCTTGAGAAACAAAATCT+AGG 0.457089 1_1:-20996557 None:intergenic
GAACAACCAACCACCACCAC+CGG 0.462238 1_1:+20996582 Msa0013550:CDS
CACTTCGTGTTTCATGAAAG+TGG 0.463397 1_1:+20997680 Msa0013550:CDS
GATTGTTTCTGGTGGGTATG+AGG 0.465601 1_1:+20997172 Msa0013550:CDS
AATGTTTGGTTTGGATTATG+AGG 0.470379 1_1:-20996396 None:intergenic
AGATCTAGGGAGACTGGTTG+GGG 0.471997 1_1:+20997911 Msa0013550:CDS
GTTATTATTTACTCGGGTCA+TGG 0.472036 1_1:+20997215 Msa0013550:CDS
AGGTGATGTTATTATTTACT+CGG 0.473486 1_1:+20997208 Msa0013550:CDS
TACTTCTTCGACTTCGGGTA+AGG 0.474074 1_1:+20997361 Msa0013550:CDS
TGGTTTGATGTTGGTAAAAG+TGG 0.475144 1_1:+20997422 Msa0013550:CDS
AGCGGCGTCGATGCCGACGC+CGG 0.479533 1_1:-20996607 None:intergenic
GGTGGTGGTTGGTTGTTCTA+GGG 0.480890 1_1:-20996577 None:intergenic
TCCCGAAACTGACGCTGATC+CGG 0.482112 1_1:-20996843 None:intergenic
GACGCCGGCGCCGGTGGTGG+TGG 0.483296 1_1:-20996592 None:intergenic
GCATTATGGAATCGAGGTTA+GGG 0.483468 1_1:+20997313 Msa0013550:CDS
TTGGCTATGGCTGAAGAAGA+AGG 0.484128 1_1:+20996909 Msa0013550:CDS
AGGATGGAGTTGTGTGTGGT+TGG 0.488005 1_1:+20997068 Msa0013550:CDS
CCGGCGCCGGTGGTGGTGGT+TGG 0.488719 1_1:-20996588 None:intergenic
CATGAAAGTGGGAATGCGAC+AGG 0.494424 1_1:+20997692 Msa0013550:CDS
GCTGGGATTGATTATTTGCC+GGG 0.495001 1_1:+20997110 Msa0013550:CDS
GCTATTGTTCCGGTTCCTGC+TGG 0.497566 1_1:+20996729 Msa0013550:CDS
TTTCGAACAGGTGGACGGAA+TGG 0.498413 1_1:+20998059 Msa0013550:CDS
CTTGTTCGAATGACTGATGT+TGG 0.498590 1_1:+20996816 Msa0013550:CDS
TACACCGAAGCAAGAGCCTC+GGG 0.501130 1_1:+20996455 Msa0013550:CDS
ACCGACACGCTCCATACCCT+TGG 0.501891 1_1:-20997582 None:intergenic
TTATTCTCACCAGCAGGAAC+CGG 0.503916 1_1:-20996738 None:intergenic
AATTTATCTCTGATTCAAGA+TGG 0.504650 1_1:+20998085 Msa0013550:CDS
TGTGGCTCAATCGCGATAAG+AGG 0.504732 1_1:+20996997 Msa0013550:CDS
ACCACCACCGGCGCCGGCGT+CGG 0.505693 1_1:+20996594 Msa0013550:CDS
TTCCGACGCTCCTTCACTGA+AGG 0.507051 1_1:+20996645 Msa0013550:CDS
TTGTAATTATTCTCACCAGC+AGG 0.507776 1_1:-20996744 None:intergenic
AAAAGGGCTTAAACATAGGT+TGG 0.511958 1_1:+20997880 Msa0013550:CDS
TATATCTCTTGATATTTCCA+AGG 0.512997 1_1:+20997565 Msa0013550:CDS
TTACTCGGGTCATGGTGGGC+AGG 0.515645 1_1:+20997223 Msa0013550:CDS
TCACATTATGCTGTTTGCGA+TGG 0.516973 1_1:+20998261 Msa0013550:CDS
GGATATTGAAATTCTTGCGT+TGG 0.517003 1_1:-20996483 None:intergenic
GGTGATGTTATTATTTACTC+GGG 0.517521 1_1:+20997209 Msa0013550:CDS
TTGTTCGAATGACTGATGTT+GGG 0.520548 1_1:+20996817 Msa0013550:CDS
ATTCGCGGTGTGAGGTATGA+AGG 0.522477 1_1:+20997338 Msa0013550:CDS
GGATTGTTGGCGCTATTCCT+GGG 0.524238 1_1:+20997018 Msa0013550:CDS
CTAGTGTGATTGTTTCTGGT+GGG 0.526236 1_1:+20997165 Msa0013550:CDS
AGCATAGGAAAAGGAATACC+AGG 0.526910 1_1:-20996432 None:intergenic
TACATGGTCAACCACAGGCT+GGG 0.530548 1_1:+20997093 Msa0013550:CDS
ACTAGTGTGATTGTTTCTGG+TGG 0.533046 1_1:+20997164 Msa0013550:CDS
ACTTTCCTTATAGTCAAAGC+GGG 0.536291 1_1:+20997774 Msa0013550:CDS
ATTGAATGCTGGTTTGATGT+TGG 0.540002 1_1:+20997413 Msa0013550:CDS
TCAAGGCTGAACTCTCTCAA+TGG 0.540411 1_1:-20998295 None:intergenic
ACAATCACACTAGTAGCAAT+CGG 0.540891 1_1:-20997155 None:intergenic
TTAGATCTAGGGAGACTGGT+TGG 0.541898 1_1:+20997909 Msa0013550:CDS
CCAACCACCACCACCGGCGC+CGG 0.541973 1_1:+20996588 Msa0013550:CDS
ATATCTCTTGATATTTCCAA+GGG 0.542298 1_1:+20997566 Msa0013550:CDS
TCATTGGACCTTATTCAAGC+TGG 0.545200 1_1:+20997941 Msa0013550:CDS
TTCATCAGAAGCTGGAAGGT+GGG 0.546457 1_1:+20997267 Msa0013550:CDS
ATCGAGGTTAGGGTTATTCG+CGG 0.547674 1_1:+20997323 Msa0013550:CDS
TTCGGTGTAAGCATAGGAAA+AGG 0.548026 1_1:-20996441 None:intergenic
TGGTTGGGGAGTTAGGTCAT+TGG 0.553990 1_1:+20997925 Msa0013550:CDS
TATTAATGAATCACCACTCA+TGG 0.554494 1_1:-20998023 None:intergenic
CAAAGCGGGCTTCTCTTGAA+AGG 0.554951 1_1:+20997788 Msa0013550:CDS
ACATTCACAACCTCACCAGC+AGG 0.555602 1_1:-20996777 None:intergenic
GCTTCTCTTGAAAGGAAAGC+CGG 0.556611 1_1:+20997796 Msa0013550:CDS
GATGCCGACGCCGGCGCCGG+TGG 0.557597 1_1:-20996598 None:intergenic
ATTGATGGTCAAGCTAAGAT+GGG 0.559091 1_1:+20997476 Msa0013550:CDS
TTTCATCAGAAGCTGGAAGG+TGG 0.563122 1_1:+20997266 Msa0013550:CDS
GCATTTATATGCGAGTACAC+CGG 0.563434 1_1:+20997965 Msa0013550:CDS
TTACATGGTCAACCACAGGC+TGG 0.564688 1_1:+20997092 Msa0013550:CDS
CGATGAGGAGTCGAGGATTG+TGG 0.566797 1_1:+20996979 Msa0013550:CDS
GGGACGTTGTCAGGAGGACG+AGG 0.567017 1_1:+20996862 Msa0013550:CDS
TCGAACAGGTGGACGGAATG+GGG 0.569248 1_1:+20998061 Msa0013550:CDS
CACAACCTCACCAGCAGGAG+GGG 0.570021 1_1:-20996772 None:intergenic
CCGGGGAGTATGAGTTCGAA+TGG 0.571907 1_1:+20997128 Msa0013550:CDS
GCAGGATAAGAATTCGAGGC+AGG 0.572812 1_1:+20997241 Msa0013550:CDS
TGGTTTACATGGTCAACCAC+AGG 0.573000 1_1:+20997088 Msa0013550:CDS
CATCAGCTACACCATAATCA+AGG 0.573838 1_1:-20998312 None:intergenic
TGGCTATGGCTGAAGAAGAA+GGG 0.574030 1_1:+20996910 Msa0013550:CDS
ATTATTTACTCGGGTCATGG+TGG 0.574077 1_1:+20997218 Msa0013550:CDS
CTTTCATGAAACACGAAGTG+TGG 0.574116 1_1:-20997677 None:intergenic
GTATAGGATGGAGTTGTGTG+TGG 0.574388 1_1:+20997064 Msa0013550:CDS
GGCTGAACTCTCTCAATGGA+GGG 0.575518 1_1:-20998291 None:intergenic
CGTTGTCAGGAGGACGAGGA+TGG 0.576453 1_1:+20996866 Msa0013550:CDS
GGAAGGTGGGAATCTTGCTA+TGG 0.576684 1_1:+20997280 Msa0013550:CDS
TCTTGCTTCGGTGTAAGCAT+AGG 0.581620 1_1:-20996447 None:intergenic
TAATGCCCCTCCTGCTGGTG+AGG 0.583346 1_1:+20996767 Msa0013550:CDS
AAATGCAAGAGCTATTGTTC+CGG 0.584406 1_1:+20996719 Msa0013550:CDS
TAGCTCAACTCCTAATGTGA+TGG 0.586959 1_1:+20998198 Msa0013550:CDS
ATCCTTCAGTGAAGGAGCGT+CGG 0.590653 1_1:-20996647 None:intergenic
TTACACCGAAGCAAGAGCCT+CGG 0.592731 1_1:+20996454 Msa0013550:CDS
GTGGGCAGGATAAGAATTCG+AGG 0.592819 1_1:+20997237 Msa0013550:CDS
TTATTTACTCGGGTCATGGT+GGG 0.593009 1_1:+20997219 Msa0013550:CDS
AGGCTGAACTCTCTCAATGG+AGG 0.596120 1_1:-20998292 None:intergenic
AAGTGTGGAAAAGTAGCCCT+AGG 0.596819 1_1:-20997662 None:intergenic
ACTTCGTGTTTCATGAAAGT+GGG 0.599783 1_1:+20997681 Msa0013550:CDS
TCAAGAGATATAACACACAT+AGG 0.602330 1_1:-20997554 None:intergenic
TCTTGCGTTGGTTCATCCCG+AGG 0.604080 1_1:-20996471 None:intergenic
GGAGGAATTGATGGATACGA+AGG 0.604652 1_1:-20998118 None:intergenic
CTGGTGAGGTTGTGAATGTA+CGG 0.604747 1_1:+20996781 Msa0013550:CDS
TTAGGGTTATTCGCGGTGTG+AGG 0.610018 1_1:+20997330 Msa0013550:CDS
ACATCACCAATACAAATCCC+AGG 0.617403 1_1:-20997035 None:intergenic
TCAGAAATTATGACCATGAG+TGG 0.618462 1_1:+20998010 Msa0013550:CDS
CATCGACGCCGCTAAAATGG+CGG 0.619075 1_1:+20996617 Msa0013550:CDS
CTCCCTTGTCAGAACAACCC+CGG 0.620595 1_1:-20997984 None:intergenic
GACTTTCCTTATAGTCAAAG+CGG 0.621269 1_1:+20997773 Msa0013550:CDS
ACACCGGGGTTGTTCTGACA+AGG 0.623440 1_1:+20997981 Msa0013550:CDS
TCACAACCTCACCAGCAGGA+GGG 0.625934 1_1:-20996773 None:intergenic
TTCACAACCTCACCAGCAGG+AGG 0.627108 1_1:-20996774 None:intergenic
CCATTCGAACTCATACTCCC+CGG 0.628119 1_1:-20997128 None:intergenic
GTGGGAATCTTGCTATGGAG+AGG 0.630151 1_1:+20997285 Msa0013550:CDS
TCGTTGTAATCCTTCAGTGA+AGG 0.635058 1_1:-20996655 None:intergenic
CTGGGATTGATTATTTGCCG+GGG 0.635375 1_1:+20997111 Msa0013550:CDS
TATGAGGATGATGTTGATGA+AGG 0.637266 1_1:+20997188 Msa0013550:CDS
GGAATTGATGGATACGAAGG+AGG 0.638458 1_1:-20998115 None:intergenic
ATCGCAAACAGCATAATGTG+AGG 0.644756 1_1:-20998259 None:intergenic
GTAGCTGATGATGAGTTGAC+TGG 0.647668 1_1:+20998325 Msa0013550:CDS
CACATAGGTTTATAACACAA+AGG 0.649300 1_1:-20997539 None:intergenic
TCGCAAACAGCATAATGTGA+GGG 0.654166 1_1:-20998258 None:intergenic
TGAAAGCTTCTACTACGATG+AGG 0.657632 1_1:+20996964 Msa0013550:CDS
GAGTATGCATTATGGAATCG+AGG 0.658351 1_1:+20997307 Msa0013550:CDS
AGTTTCGGGACGTTGTCAGG+AGG 0.665905 1_1:+20996856 Msa0013550:CDS
TGAGGCGGACAACTACAAGA+AGG 0.667023 1_1:-20997836 None:intergenic
AAATAATCAATCCCAGCCTG+TGG 0.670495 1_1:-20997104 None:intergenic
TCTACTACGATGAGGAGTCG+AGG 0.680653 1_1:+20996972 Msa0013550:CDS
ACACGGTTCCGACAATGAGG+CGG 0.681770 1_1:-20997851 None:intergenic
TCCAAGGGTATGGAGCGTGT+CGG 0.686880 1_1:+20997581 Msa0013550:CDS
GGAAGATACTCAAAACACAT+CGG 0.687151 1_1:-20997641 None:intergenic
GCATAGGAAAAGGAATACCA+GGG 0.688262 1_1:-20996431 None:intergenic
CACCGGGGTTGTTCTGACAA+GGG 0.693324 1_1:+20997982 Msa0013550:CDS
GTAACACGGTTCCGACAATG+AGG 0.724410 1_1:-20997854 None:intergenic
CATAGGAAAAGGAATACCAG+GGG 0.729249 1_1:-20996430 None:intergenic
TGTGTCCAGAATGAGGAATG+TGG 0.743322 1_1:+20998159 Msa0013550:CDS
ATTTATATGCGAGTACACCG+GGG 0.752383 1_1:+20997967 Msa0013550:CDS
ATAGGAAAAGGAATACCAGG+GGG 0.791262 1_1:-20996429 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAGATTTAGGTTTAGATTT+TGG - chr1_1:20996530-20996549 None:intergenic 20.0%
!!! GTGTTTTTAAGTTTAAGTTA+TGG + chr1_1:20997450-20997469 Msa0013550:CDS 20.0%
!!! TTTTTAAGTTTAAGTTATGG+AGG + chr1_1:20997453-20997472 Msa0013550:CDS 20.0%
!!! TGTTTTTGCTTCATAAAAAA+TGG + chr1_1:20997746-20997765 Msa0013550:CDS 20.0%
!!! TTAGATTTAGGTTTAGATTT+TGG - chr1_1:20996530-20996549 None:intergenic 20.0%
!!! GTGTTTTTAAGTTTAAGTTA+TGG + chr1_1:20997450-20997469 Msa0013550:CDS 20.0%
!!! TTTTTAAGTTTAAGTTATGG+AGG + chr1_1:20997453-20997472 Msa0013550:CDS 20.0%
!!! TGTTTTTGCTTCATAAAAAA+TGG + chr1_1:20997746-20997765 Msa0013550:CDS 20.0%
!!! TTTAGGTTTAGATTTTGGTT+CGG - chr1_1:20996525-20996544 None:intergenic 25.0%
!!! AAGAAGGGAATTTTAATGTT+AGG + chr1_1:20996925-20996944 Msa0013550:CDS 25.0%
! AGGTGATGTTATTATTTACT+CGG + chr1_1:20997208-20997227 Msa0013550:CDS 25.0%
!! ATGTTTATGATGGTTTGTAT+AGG + chr1_1:20997387-20997406 Msa0013550:CDS 25.0%
! TATATCTCTTGATATTTCCA+AGG + chr1_1:20997565-20997584 Msa0013550:CDS 25.0%
! ATATCTCTTGATATTTCCAA+GGG + chr1_1:20997566-20997585 Msa0013550:CDS 25.0%
! AATTTATCTCTGATTCAAGA+TGG + chr1_1:20998085-20998104 Msa0013550:CDS 25.0%
!!! TTTAGGTTTAGATTTTGGTT+CGG - chr1_1:20996525-20996544 None:intergenic 25.0%
!!! AAGAAGGGAATTTTAATGTT+AGG + chr1_1:20996925-20996944 Msa0013550:CDS 25.0%
! AGGTGATGTTATTATTTACT+CGG + chr1_1:20997208-20997227 Msa0013550:CDS 25.0%
!! ATGTTTATGATGGTTTGTAT+AGG + chr1_1:20997387-20997406 Msa0013550:CDS 25.0%
! TATATCTCTTGATATTTCCA+AGG + chr1_1:20997565-20997584 Msa0013550:CDS 25.0%
! ATATCTCTTGATATTTCCAA+GGG + chr1_1:20997566-20997585 Msa0013550:CDS 25.0%
! AATTTATCTCTGATTCAAGA+TGG + chr1_1:20998085-20998104 Msa0013550:CDS 25.0%
!! AATGTTTGGTTTGGATTATG+AGG - chr1_1:20996399-20996418 None:intergenic 30.0%
! TTCGGTAAATTTTCTAGGTT+TGG - chr1_1:20996507-20996526 None:intergenic 30.0%
!!! TTTGGTTCGGTAAATTTTCT+AGG - chr1_1:20996512-20996531 None:intergenic 30.0%
!!! TTGGTGATGTGTTTTTGTAT+AGG + chr1_1:20997048-20997067 Msa0013550:CDS 30.0%
!! TGATGTGTTTTTGTATAGGA+TGG + chr1_1:20997052-20997071 Msa0013550:CDS 30.0%
GGTGATGTTATTATTTACTC+GGG + chr1_1:20997209-20997228 Msa0013550:CDS 30.0%
GGTAAGGTTTATGTTTATGA+TGG + chr1_1:20997377-20997396 Msa0013550:CDS 30.0%
TGTATAGGATTATTGAATGC+TGG + chr1_1:20997402-20997421 Msa0013550:CDS 30.0%
! TTTAAGTTATGGAGGATTGA+TGG + chr1_1:20997461-20997480 Msa0013550:CDS 30.0%
!! GATGGGTAGTTTGATTTTAA+AGG + chr1_1:20997493-20997512 Msa0013550:CDS 30.0%
CACATAGGTTTATAACACAA+AGG - chr1_1:20997542-20997561 None:intergenic 30.0%
TCAAGAGATATAACACACAT+AGG - chr1_1:20997557-20997576 None:intergenic 30.0%
TATTAATGAATCACCACTCA+TGG - chr1_1:20998026-20998045 None:intergenic 30.0%
ACATCAAGAGAAAAATCCAA+AGG - chr1_1:20998142-20998161 None:intergenic 30.0%
!! AATGTTTGGTTTGGATTATG+AGG - chr1_1:20996399-20996418 None:intergenic 30.0%
! TTCGGTAAATTTTCTAGGTT+TGG - chr1_1:20996507-20996526 None:intergenic 30.0%
!!! TTTGGTTCGGTAAATTTTCT+AGG - chr1_1:20996512-20996531 None:intergenic 30.0%
!!! TTGGTGATGTGTTTTTGTAT+AGG + chr1_1:20997048-20997067 Msa0013550:CDS 30.0%
!! TGATGTGTTTTTGTATAGGA+TGG + chr1_1:20997052-20997071 Msa0013550:CDS 30.0%
GGTGATGTTATTATTTACTC+GGG + chr1_1:20997209-20997228 Msa0013550:CDS 30.0%
GGTAAGGTTTATGTTTATGA+TGG + chr1_1:20997377-20997396 Msa0013550:CDS 30.0%
TGTATAGGATTATTGAATGC+TGG + chr1_1:20997402-20997421 Msa0013550:CDS 30.0%
! TTTAAGTTATGGAGGATTGA+TGG + chr1_1:20997461-20997480 Msa0013550:CDS 30.0%
!! GATGGGTAGTTTGATTTTAA+AGG + chr1_1:20997493-20997512 Msa0013550:CDS 30.0%
CACATAGGTTTATAACACAA+AGG - chr1_1:20997542-20997561 None:intergenic 30.0%
TCAAGAGATATAACACACAT+AGG - chr1_1:20997557-20997576 None:intergenic 30.0%
TATTAATGAATCACCACTCA+TGG - chr1_1:20998026-20998045 None:intergenic 30.0%
ACATCAAGAGAAAAATCCAA+AGG - chr1_1:20998142-20998161 None:intergenic 30.0%
GGATATTGAAATTCTTGCGT+TGG - chr1_1:20996486-20996505 None:intergenic 35.0%
CTAGGTTCAGACTTAGATTT+AGG - chr1_1:20996542-20996561 None:intergenic 35.0%
AAATGCAAGAGCTATTGTTC+CGG + chr1_1:20996719-20996738 Msa0013550:CDS 35.0%
TTGTAATTATTCTCACCAGC+AGG - chr1_1:20996747-20996766 None:intergenic 35.0%
TTGTTCGAATGACTGATGTT+GGG + chr1_1:20996817-20996836 Msa0013550:CDS 35.0%
!!! TTATGATTCGGTTCGTGTTT+TGG + chr1_1:20996890-20996909 Msa0013550:CDS 35.0%
ACAATCACACTAGTAGCAAT+CGG - chr1_1:20997158-20997177 None:intergenic 35.0%
! TATGAGGATGATGTTGATGA+AGG + chr1_1:20997188-20997207 Msa0013550:CDS 35.0%
GTTATTATTTACTCGGGTCA+TGG + chr1_1:20997215-20997234 Msa0013550:CDS 35.0%
!! ATTGAATGCTGGTTTGATGT+TGG + chr1_1:20997413-20997432 Msa0013550:CDS 35.0%
! TGGTTTGATGTTGGTAAAAG+TGG + chr1_1:20997422-20997441 Msa0013550:CDS 35.0%
!! GATGTTGGTAAAAGTGGTTT+TGG + chr1_1:20997428-20997447 Msa0013550:CDS 35.0%
! ATTGATGGTCAAGCTAAGAT+GGG + chr1_1:20997476-20997495 Msa0013550:CDS 35.0%
!! GGGTAGTTTGATTTTAAAGG+AGG + chr1_1:20997496-20997515 Msa0013550:CDS 35.0%
!!! TAAAGGAGGCTTTTTTGCTT+AGG + chr1_1:20997510-20997529 Msa0013550:CDS 35.0%
TCTTGATATTTCCAAGGGTA+TGG + chr1_1:20997571-20997590 Msa0013550:CDS 35.0%
GGAAGATACTCAAAACACAT+CGG - chr1_1:20997644-20997663 None:intergenic 35.0%
!! TGTGTTTTGAGTATCTTCCT+AGG + chr1_1:20997645-20997664 Msa0013550:CDS 35.0%
!! GTGTTTTGAGTATCTTCCTA+GGG + chr1_1:20997646-20997665 Msa0013550:CDS 35.0%
ACTTCGTGTTTCATGAAAGT+GGG + chr1_1:20997681-20997700 Msa0013550:CDS 35.0%
GACTTTCCTTATAGTCAAAG+CGG + chr1_1:20997773-20997792 Msa0013550:CDS 35.0%
ACTTTCCTTATAGTCAAAGC+GGG + chr1_1:20997774-20997793 Msa0013550:CDS 35.0%
AAAAGGGCTTAAACATAGGT+TGG + chr1_1:20997880-20997899 Msa0013550:CDS 35.0%
!! GTTGGAAGTGTTTAGATCTA+GGG + chr1_1:20997898-20997917 Msa0013550:CDS 35.0%
TAAATGCACCAGCTTGAATA+AGG - chr1_1:20997952-20997971 None:intergenic 35.0%
TCAGAAATTATGACCATGAG+TGG + chr1_1:20998010-20998029 Msa0013550:CDS 35.0%
AAATCCAAAGGAGGAATTGA+TGG - chr1_1:20998130-20998149 None:intergenic 35.0%
TCAAGAGAAAAATCCAAAGG+AGG - chr1_1:20998139-20998158 None:intergenic 35.0%
ACAAACTGAACCATCACATT+AGG - chr1_1:20998211-20998230 None:intergenic 35.0%
GGATATTGAAATTCTTGCGT+TGG - chr1_1:20996486-20996505 None:intergenic 35.0%
CTAGGTTCAGACTTAGATTT+AGG - chr1_1:20996542-20996561 None:intergenic 35.0%
AAATGCAAGAGCTATTGTTC+CGG + chr1_1:20996719-20996738 Msa0013550:CDS 35.0%
TTGTAATTATTCTCACCAGC+AGG - chr1_1:20996747-20996766 None:intergenic 35.0%
TTGTTCGAATGACTGATGTT+GGG + chr1_1:20996817-20996836 Msa0013550:CDS 35.0%
!!! TTATGATTCGGTTCGTGTTT+TGG + chr1_1:20996890-20996909 Msa0013550:CDS 35.0%
ACAATCACACTAGTAGCAAT+CGG - chr1_1:20997158-20997177 None:intergenic 35.0%
! TATGAGGATGATGTTGATGA+AGG + chr1_1:20997188-20997207 Msa0013550:CDS 35.0%
GTTATTATTTACTCGGGTCA+TGG + chr1_1:20997215-20997234 Msa0013550:CDS 35.0%
!! ATTGAATGCTGGTTTGATGT+TGG + chr1_1:20997413-20997432 Msa0013550:CDS 35.0%
! TGGTTTGATGTTGGTAAAAG+TGG + chr1_1:20997422-20997441 Msa0013550:CDS 35.0%
!! GATGTTGGTAAAAGTGGTTT+TGG + chr1_1:20997428-20997447 Msa0013550:CDS 35.0%
! ATTGATGGTCAAGCTAAGAT+GGG + chr1_1:20997476-20997495 Msa0013550:CDS 35.0%
!! GGGTAGTTTGATTTTAAAGG+AGG + chr1_1:20997496-20997515 Msa0013550:CDS 35.0%
!!! TAAAGGAGGCTTTTTTGCTT+AGG + chr1_1:20997510-20997529 Msa0013550:CDS 35.0%
TCTTGATATTTCCAAGGGTA+TGG + chr1_1:20997571-20997590 Msa0013550:CDS 35.0%
GGAAGATACTCAAAACACAT+CGG - chr1_1:20997644-20997663 None:intergenic 35.0%
!! TGTGTTTTGAGTATCTTCCT+AGG + chr1_1:20997645-20997664 Msa0013550:CDS 35.0%
!! GTGTTTTGAGTATCTTCCTA+GGG + chr1_1:20997646-20997665 Msa0013550:CDS 35.0%
ACTTCGTGTTTCATGAAAGT+GGG + chr1_1:20997681-20997700 Msa0013550:CDS 35.0%
GACTTTCCTTATAGTCAAAG+CGG + chr1_1:20997773-20997792 Msa0013550:CDS 35.0%
ACTTTCCTTATAGTCAAAGC+GGG + chr1_1:20997774-20997793 Msa0013550:CDS 35.0%
AAAAGGGCTTAAACATAGGT+TGG + chr1_1:20997880-20997899 Msa0013550:CDS 35.0%
!! GTTGGAAGTGTTTAGATCTA+GGG + chr1_1:20997898-20997917 Msa0013550:CDS 35.0%
TAAATGCACCAGCTTGAATA+AGG - chr1_1:20997952-20997971 None:intergenic 35.0%
TCAGAAATTATGACCATGAG+TGG + chr1_1:20998010-20998029 Msa0013550:CDS 35.0%
AAATCCAAAGGAGGAATTGA+TGG - chr1_1:20998130-20998149 None:intergenic 35.0%
TCAAGAGAAAAATCCAAAGG+AGG - chr1_1:20998139-20998158 None:intergenic 35.0%
ACAAACTGAACCATCACATT+AGG - chr1_1:20998211-20998230 None:intergenic 35.0%
GCTGATGGAAATGTTTGGTT+TGG - chr1_1:20996408-20996427 None:intergenic 40.0%
ATAGGAAAAGGAATACCAGG+GGG - chr1_1:20996432-20996451 None:intergenic 40.0%
CATAGGAAAAGGAATACCAG+GGG - chr1_1:20996433-20996452 None:intergenic 40.0%
GCATAGGAAAAGGAATACCA+GGG - chr1_1:20996434-20996453 None:intergenic 40.0%
AGCATAGGAAAAGGAATACC+AGG - chr1_1:20996435-20996454 None:intergenic 40.0%
! TTCGGTGTAAGCATAGGAAA+AGG - chr1_1:20996444-20996463 None:intergenic 40.0%
GGGCTTGAGAAACAAAATCT+AGG - chr1_1:20996560-20996579 None:intergenic 40.0%
!! GAAAATCTCCGCCATTTTAG+CGG - chr1_1:20996628-20996647 None:intergenic 40.0%
TCGTTGTAATCCTTCAGTGA+AGG - chr1_1:20996658-20996677 None:intergenic 40.0%
ATAGCTCTTGCATTTGCATC+TGG - chr1_1:20996714-20996733 None:intergenic 40.0%
CTTGTTCGAATGACTGATGT+TGG + chr1_1:20996816-20996835 Msa0013550:CDS 40.0%
AATGACTGATGTTGGGTTAC+CGG + chr1_1:20996824-20996843 Msa0013550:CDS 40.0%
GACGAGGATGGTTTATGATT+CGG + chr1_1:20996878-20996897 Msa0013550:CDS 40.0%
TGAAAGCTTCTACTACGATG+AGG + chr1_1:20996964-20996983 Msa0013550:CDS 40.0%
AATCGCGATAAGAGGATTGT+TGG + chr1_1:20997005-20997024 Msa0013550:CDS 40.0%
GCTATTCCTGGGATTTGTAT+TGG + chr1_1:20997029-20997048 Msa0013550:CDS 40.0%
ACATCACCAATACAAATCCC+AGG - chr1_1:20997038-20997057 None:intergenic 40.0%
!! TTGTGTGTGGTTGGTTTACA+TGG + chr1_1:20997077-20997096 Msa0013550:CDS 40.0%
AAATAATCAATCCCAGCCTG+TGG - chr1_1:20997107-20997126 None:intergenic 40.0%
GCTACTAGTGTGATTGTTTC+TGG + chr1_1:20997161-20997180 Msa0013550:CDS 40.0%
!! ACTAGTGTGATTGTTTCTGG+TGG + chr1_1:20997164-20997183 Msa0013550:CDS 40.0%
!! CTAGTGTGATTGTTTCTGGT+GGG + chr1_1:20997165-20997184 Msa0013550:CDS 40.0%
ATTATTTACTCGGGTCATGG+TGG + chr1_1:20997218-20997237 Msa0013550:CDS 40.0%
TTATTTACTCGGGTCATGGT+GGG + chr1_1:20997219-20997238 Msa0013550:CDS 40.0%
! GTTTTTCATCAGAAGCTGGA+AGG + chr1_1:20997263-20997282 Msa0013550:CDS 40.0%
! ATGGAGAGGAGTATGCATTA+TGG + chr1_1:20997299-20997318 Msa0013550:CDS 40.0%
GAGTATGCATTATGGAATCG+AGG + chr1_1:20997307-20997326 Msa0013550:CDS 40.0%
TGCATTATGGAATCGAGGTT+AGG + chr1_1:20997312-20997331 Msa0013550:CDS 40.0%
GCATTATGGAATCGAGGTTA+GGG + chr1_1:20997313-20997332 Msa0013550:CDS 40.0%
!! TGAAGGTACTTCTTCGACTT+CGG + chr1_1:20997355-20997374 Msa0013550:CDS 40.0%
! GATTGATGGTCAAGCTAAGA+TGG + chr1_1:20997475-20997494 Msa0013550:CDS 40.0%
CTTTCATGAAACACGAAGTG+TGG - chr1_1:20997680-20997699 None:intergenic 40.0%
CACTTCGTGTTTCATGAAAG+TGG + chr1_1:20997680-20997699 Msa0013550:CDS 40.0%
! TGTCAATGTGAGAGCTTTTG+TGG + chr1_1:20997716-20997735 Msa0013550:CDS 40.0%
!!! AAGCCGGTCATTTTTGAATG+TGG + chr1_1:20997812-20997831 Msa0013550:CDS 40.0%
GGACCACATTCAAAAATGAC+CGG - chr1_1:20997818-20997837 None:intergenic 40.0%
! TAAGCCCTTTTTGCGTAACA+CGG - chr1_1:20997871-20997890 None:intergenic 40.0%
CGCAAAAAGGGCTTAAACAT+AGG + chr1_1:20997876-20997895 Msa0013550:CDS 40.0%
!! GGTTGGAAGTGTTTAGATCT+AGG + chr1_1:20997897-20997916 Msa0013550:CDS 40.0%
TCATTGGACCTTATTCAAGC+TGG + chr1_1:20997941-20997960 Msa0013550:CDS 40.0%
GCATTTATATGCGAGTACAC+CGG + chr1_1:20997965-20997984 Msa0013550:CDS 40.0%
CATTTATATGCGAGTACACC+GGG + chr1_1:20997966-20997985 Msa0013550:CDS 40.0%
ATTTATATGCGAGTACACCG+GGG + chr1_1:20997967-20997986 Msa0013550:CDS 40.0%
!! ATCCGAATCGTTTTTCGAAC+AGG + chr1_1:20998047-20998066 Msa0013550:CDS 40.0%
CACCTGTTCGAAAAACGATT+CGG - chr1_1:20998052-20998071 None:intergenic 40.0%
GTATCCATCAATTCCTCCTT+TGG + chr1_1:20998123-20998142 Msa0013550:CDS 40.0%
TAGCTCAACTCCTAATGTGA+TGG + chr1_1:20998198-20998217 Msa0013550:CDS 40.0%
TCGCAAACAGCATAATGTGA+GGG - chr1_1:20998261-20998280 None:intergenic 40.0%
ATCGCAAACAGCATAATGTG+AGG - chr1_1:20998262-20998281 None:intergenic 40.0%
! TCACATTATGCTGTTTGCGA+TGG + chr1_1:20998261-20998280 Msa0013550:CDS 40.0%
AGAGAGTTCAGCCTTGATTA+TGG + chr1_1:20998301-20998320 Msa0013550:CDS 40.0%
CATCAGCTACACCATAATCA+AGG - chr1_1:20998315-20998334 None:intergenic 40.0%
GCTGATGGAAATGTTTGGTT+TGG - chr1_1:20996408-20996427 None:intergenic 40.0%
ATAGGAAAAGGAATACCAGG+GGG - chr1_1:20996432-20996451 None:intergenic 40.0%
CATAGGAAAAGGAATACCAG+GGG - chr1_1:20996433-20996452 None:intergenic 40.0%
GCATAGGAAAAGGAATACCA+GGG - chr1_1:20996434-20996453 None:intergenic 40.0%
AGCATAGGAAAAGGAATACC+AGG - chr1_1:20996435-20996454 None:intergenic 40.0%
! TTCGGTGTAAGCATAGGAAA+AGG - chr1_1:20996444-20996463 None:intergenic 40.0%
GGGCTTGAGAAACAAAATCT+AGG - chr1_1:20996560-20996579 None:intergenic 40.0%
!! GAAAATCTCCGCCATTTTAG+CGG - chr1_1:20996628-20996647 None:intergenic 40.0%
TCGTTGTAATCCTTCAGTGA+AGG - chr1_1:20996658-20996677 None:intergenic 40.0%
ATAGCTCTTGCATTTGCATC+TGG - chr1_1:20996714-20996733 None:intergenic 40.0%
CTTGTTCGAATGACTGATGT+TGG + chr1_1:20996816-20996835 Msa0013550:CDS 40.0%
AATGACTGATGTTGGGTTAC+CGG + chr1_1:20996824-20996843 Msa0013550:CDS 40.0%
GACGAGGATGGTTTATGATT+CGG + chr1_1:20996878-20996897 Msa0013550:CDS 40.0%
TGAAAGCTTCTACTACGATG+AGG + chr1_1:20996964-20996983 Msa0013550:CDS 40.0%
AATCGCGATAAGAGGATTGT+TGG + chr1_1:20997005-20997024 Msa0013550:CDS 40.0%
GCTATTCCTGGGATTTGTAT+TGG + chr1_1:20997029-20997048 Msa0013550:CDS 40.0%
ACATCACCAATACAAATCCC+AGG - chr1_1:20997038-20997057 None:intergenic 40.0%
!! TTGTGTGTGGTTGGTTTACA+TGG + chr1_1:20997077-20997096 Msa0013550:CDS 40.0%
AAATAATCAATCCCAGCCTG+TGG - chr1_1:20997107-20997126 None:intergenic 40.0%
GCTACTAGTGTGATTGTTTC+TGG + chr1_1:20997161-20997180 Msa0013550:CDS 40.0%
!! ACTAGTGTGATTGTTTCTGG+TGG + chr1_1:20997164-20997183 Msa0013550:CDS 40.0%
!! CTAGTGTGATTGTTTCTGGT+GGG + chr1_1:20997165-20997184 Msa0013550:CDS 40.0%
ATTATTTACTCGGGTCATGG+TGG + chr1_1:20997218-20997237 Msa0013550:CDS 40.0%
TTATTTACTCGGGTCATGGT+GGG + chr1_1:20997219-20997238 Msa0013550:CDS 40.0%
! GTTTTTCATCAGAAGCTGGA+AGG + chr1_1:20997263-20997282 Msa0013550:CDS 40.0%
! ATGGAGAGGAGTATGCATTA+TGG + chr1_1:20997299-20997318 Msa0013550:CDS 40.0%
GAGTATGCATTATGGAATCG+AGG + chr1_1:20997307-20997326 Msa0013550:CDS 40.0%
TGCATTATGGAATCGAGGTT+AGG + chr1_1:20997312-20997331 Msa0013550:CDS 40.0%
GCATTATGGAATCGAGGTTA+GGG + chr1_1:20997313-20997332 Msa0013550:CDS 40.0%
!! TGAAGGTACTTCTTCGACTT+CGG + chr1_1:20997355-20997374 Msa0013550:CDS 40.0%
! GATTGATGGTCAAGCTAAGA+TGG + chr1_1:20997475-20997494 Msa0013550:CDS 40.0%
CTTTCATGAAACACGAAGTG+TGG - chr1_1:20997680-20997699 None:intergenic 40.0%
CACTTCGTGTTTCATGAAAG+TGG + chr1_1:20997680-20997699 Msa0013550:CDS 40.0%
! TGTCAATGTGAGAGCTTTTG+TGG + chr1_1:20997716-20997735 Msa0013550:CDS 40.0%
!!! AAGCCGGTCATTTTTGAATG+TGG + chr1_1:20997812-20997831 Msa0013550:CDS 40.0%
GGACCACATTCAAAAATGAC+CGG - chr1_1:20997818-20997837 None:intergenic 40.0%
! TAAGCCCTTTTTGCGTAACA+CGG - chr1_1:20997871-20997890 None:intergenic 40.0%
CGCAAAAAGGGCTTAAACAT+AGG + chr1_1:20997876-20997895 Msa0013550:CDS 40.0%
!! GGTTGGAAGTGTTTAGATCT+AGG + chr1_1:20997897-20997916 Msa0013550:CDS 40.0%
TCATTGGACCTTATTCAAGC+TGG + chr1_1:20997941-20997960 Msa0013550:CDS 40.0%
GCATTTATATGCGAGTACAC+CGG + chr1_1:20997965-20997984 Msa0013550:CDS 40.0%
CATTTATATGCGAGTACACC+GGG + chr1_1:20997966-20997985 Msa0013550:CDS 40.0%
ATTTATATGCGAGTACACCG+GGG + chr1_1:20997967-20997986 Msa0013550:CDS 40.0%
!! ATCCGAATCGTTTTTCGAAC+AGG + chr1_1:20998047-20998066 Msa0013550:CDS 40.0%
CACCTGTTCGAAAAACGATT+CGG - chr1_1:20998052-20998071 None:intergenic 40.0%
GTATCCATCAATTCCTCCTT+TGG + chr1_1:20998123-20998142 Msa0013550:CDS 40.0%
TAGCTCAACTCCTAATGTGA+TGG + chr1_1:20998198-20998217 Msa0013550:CDS 40.0%
TCGCAAACAGCATAATGTGA+GGG - chr1_1:20998261-20998280 None:intergenic 40.0%
ATCGCAAACAGCATAATGTG+AGG - chr1_1:20998262-20998281 None:intergenic 40.0%
! TCACATTATGCTGTTTGCGA+TGG + chr1_1:20998261-20998280 Msa0013550:CDS 40.0%
AGAGAGTTCAGCCTTGATTA+TGG + chr1_1:20998301-20998320 Msa0013550:CDS 40.0%
CATCAGCTACACCATAATCA+AGG - chr1_1:20998315-20998334 None:intergenic 40.0%
! TCTTGCTTCGGTGTAAGCAT+AGG - chr1_1:20996450-20996469 None:intergenic 45.0%
TTATTCTCACCAGCAGGAAC+CGG - chr1_1:20996741-20996760 None:intergenic 45.0%
CTGGTGAGGTTGTGAATGTA+CGG + chr1_1:20996781-20996800 Msa0013550:CDS 45.0%
!!! TTCGGTTCGTGTTTTGGCTA+TGG + chr1_1:20996896-20996915 Msa0013550:CDS 45.0%
TTGGCTATGGCTGAAGAAGA+AGG + chr1_1:20996909-20996928 Msa0013550:CDS 45.0%
TGGCTATGGCTGAAGAAGAA+GGG + chr1_1:20996910-20996929 Msa0013550:CDS 45.0%
GTATAGGATGGAGTTGTGTG+TGG + chr1_1:20997064-20997083 Msa0013550:CDS 45.0%
TGGTTTACATGGTCAACCAC+AGG + chr1_1:20997088-20997107 Msa0013550:CDS 45.0%
GGCTGGGATTGATTATTTGC+CGG + chr1_1:20997109-20997128 Msa0013550:CDS 45.0%
GCTGGGATTGATTATTTGCC+GGG + chr1_1:20997110-20997129 Msa0013550:CDS 45.0%
CTGGGATTGATTATTTGCCG+GGG + chr1_1:20997111-20997130 Msa0013550:CDS 45.0%
!! GATTGTTTCTGGTGGGTATG+AGG + chr1_1:20997172-20997191 Msa0013550:CDS 45.0%
! GCAGGTTTTTCATCAGAAGC+TGG + chr1_1:20997259-20997278 Msa0013550:CDS 45.0%
TTTCATCAGAAGCTGGAAGG+TGG + chr1_1:20997266-20997285 Msa0013550:CDS 45.0%
TTCATCAGAAGCTGGAAGGT+GGG + chr1_1:20997267-20997286 Msa0013550:CDS 45.0%
ATCGAGGTTAGGGTTATTCG+CGG + chr1_1:20997323-20997342 Msa0013550:CDS 45.0%
!! GAAGGTACTTCTTCGACTTC+GGG + chr1_1:20997356-20997375 Msa0013550:CDS 45.0%
TACTTCTTCGACTTCGGGTA+AGG + chr1_1:20997361-20997380 Msa0013550:CDS 45.0%
AAGTGTGGAAAAGTAGCCCT+AGG - chr1_1:20997665-20997684 None:intergenic 45.0%
! TGTGAGAGCTTTTGTGGAGA+AGG + chr1_1:20997722-20997741 Msa0013550:CDS 45.0%
AGAAGCCCGCTTTGACTATA+AGG - chr1_1:20997782-20997801 None:intergenic 45.0%
GCTTCTCTTGAAAGGAAAGC+CGG + chr1_1:20997796-20997815 Msa0013550:CDS 45.0%
GGAACCGTGTTACGCAAAAA+GGG + chr1_1:20997864-20997883 Msa0013550:CDS 45.0%
GTGTTTAGATCTAGGGAGAC+TGG + chr1_1:20997905-20997924 Msa0013550:CDS 45.0%
TTAGATCTAGGGAGACTGGT+TGG + chr1_1:20997909-20997928 Msa0013550:CDS 45.0%
! TAGATCTAGGGAGACTGGTT+GGG + chr1_1:20997910-20997929 Msa0013550:CDS 45.0%
!! CGAATCGTTTTTCGAACAGG+TGG + chr1_1:20998050-20998069 Msa0013550:CDS 45.0%
!! TCGTTTTTCGAACAGGTGGA+CGG + chr1_1:20998054-20998073 Msa0013550:CDS 45.0%
! GGAATTGATGGATACGAAGG+AGG - chr1_1:20998118-20998137 None:intergenic 45.0%
! GGAGGAATTGATGGATACGA+AGG - chr1_1:20998121-20998140 None:intergenic 45.0%
CTCTTGATGTGTCCAGAATG+AGG + chr1_1:20998152-20998171 Msa0013550:CDS 45.0%
TGTGTCCAGAATGAGGAATG+TGG + chr1_1:20998159-20998178 Msa0013550:CDS 45.0%
TCAAGGCTGAACTCTCTCAA+TGG - chr1_1:20998298-20998317 None:intergenic 45.0%
! GTAGCTGATGATGAGTTGAC+TGG + chr1_1:20998325-20998344 Msa0013550:CDS 45.0%
! TCTTGCTTCGGTGTAAGCAT+AGG - chr1_1:20996450-20996469 None:intergenic 45.0%
TTATTCTCACCAGCAGGAAC+CGG - chr1_1:20996741-20996760 None:intergenic 45.0%
CTGGTGAGGTTGTGAATGTA+CGG + chr1_1:20996781-20996800 Msa0013550:CDS 45.0%
!!! TTCGGTTCGTGTTTTGGCTA+TGG + chr1_1:20996896-20996915 Msa0013550:CDS 45.0%
TTGGCTATGGCTGAAGAAGA+AGG + chr1_1:20996909-20996928 Msa0013550:CDS 45.0%
TGGCTATGGCTGAAGAAGAA+GGG + chr1_1:20996910-20996929 Msa0013550:CDS 45.0%
GTATAGGATGGAGTTGTGTG+TGG + chr1_1:20997064-20997083 Msa0013550:CDS 45.0%
TGGTTTACATGGTCAACCAC+AGG + chr1_1:20997088-20997107 Msa0013550:CDS 45.0%
GGCTGGGATTGATTATTTGC+CGG + chr1_1:20997109-20997128 Msa0013550:CDS 45.0%
GCTGGGATTGATTATTTGCC+GGG + chr1_1:20997110-20997129 Msa0013550:CDS 45.0%
CTGGGATTGATTATTTGCCG+GGG + chr1_1:20997111-20997130 Msa0013550:CDS 45.0%
!! GATTGTTTCTGGTGGGTATG+AGG + chr1_1:20997172-20997191 Msa0013550:CDS 45.0%
! GCAGGTTTTTCATCAGAAGC+TGG + chr1_1:20997259-20997278 Msa0013550:CDS 45.0%
TTTCATCAGAAGCTGGAAGG+TGG + chr1_1:20997266-20997285 Msa0013550:CDS 45.0%
TTCATCAGAAGCTGGAAGGT+GGG + chr1_1:20997267-20997286 Msa0013550:CDS 45.0%
ATCGAGGTTAGGGTTATTCG+CGG + chr1_1:20997323-20997342 Msa0013550:CDS 45.0%
!! GAAGGTACTTCTTCGACTTC+GGG + chr1_1:20997356-20997375 Msa0013550:CDS 45.0%
TACTTCTTCGACTTCGGGTA+AGG + chr1_1:20997361-20997380 Msa0013550:CDS 45.0%
AAGTGTGGAAAAGTAGCCCT+AGG - chr1_1:20997665-20997684 None:intergenic 45.0%
! TGTGAGAGCTTTTGTGGAGA+AGG + chr1_1:20997722-20997741 Msa0013550:CDS 45.0%
AGAAGCCCGCTTTGACTATA+AGG - chr1_1:20997782-20997801 None:intergenic 45.0%
GCTTCTCTTGAAAGGAAAGC+CGG + chr1_1:20997796-20997815 Msa0013550:CDS 45.0%
GGAACCGTGTTACGCAAAAA+GGG + chr1_1:20997864-20997883 Msa0013550:CDS 45.0%
GTGTTTAGATCTAGGGAGAC+TGG + chr1_1:20997905-20997924 Msa0013550:CDS 45.0%
TTAGATCTAGGGAGACTGGT+TGG + chr1_1:20997909-20997928 Msa0013550:CDS 45.0%
! TAGATCTAGGGAGACTGGTT+GGG + chr1_1:20997910-20997929 Msa0013550:CDS 45.0%
!! CGAATCGTTTTTCGAACAGG+TGG + chr1_1:20998050-20998069 Msa0013550:CDS 45.0%
!! TCGTTTTTCGAACAGGTGGA+CGG + chr1_1:20998054-20998073 Msa0013550:CDS 45.0%
! GGAATTGATGGATACGAAGG+AGG - chr1_1:20998118-20998137 None:intergenic 45.0%
! GGAGGAATTGATGGATACGA+AGG - chr1_1:20998121-20998140 None:intergenic 45.0%
CTCTTGATGTGTCCAGAATG+AGG + chr1_1:20998152-20998171 Msa0013550:CDS 45.0%
TGTGTCCAGAATGAGGAATG+TGG + chr1_1:20998159-20998178 Msa0013550:CDS 45.0%
TCAAGGCTGAACTCTCTCAA+TGG - chr1_1:20998298-20998317 None:intergenic 45.0%
! GTAGCTGATGATGAGTTGAC+TGG + chr1_1:20998325-20998344 Msa0013550:CDS 45.0%
!! GGGGTGCTGATGGAAATGTT+TGG - chr1_1:20996413-20996432 None:intergenic 50.0%
TTACACCGAAGCAAGAGCCT+CGG + chr1_1:20996454-20996473 Msa0013550:CDS 50.0%
! GGTGGTGGTTGGTTGTTCTA+GGG - chr1_1:20996580-20996599 None:intergenic 50.0%
!! TGGTGGTGGTTGGTTGTTCT+AGG - chr1_1:20996581-20996600 None:intergenic 50.0%
! ATCCTTCAGTGAAGGAGCGT+CGG - chr1_1:20996650-20996669 None:intergenic 50.0%
TACAATAATGCCCCTCCTGC+TGG + chr1_1:20996762-20996781 Msa0013550:CDS 50.0%
ACATTCACAACCTCACCAGC+AGG - chr1_1:20996780-20996799 None:intergenic 50.0%
TACCGGATCAGCGTCAGTTT+CGG + chr1_1:20996841-20996860 Msa0013550:CDS 50.0%
TCTACTACGATGAGGAGTCG+AGG + chr1_1:20996972-20996991 Msa0013550:CDS 50.0%
TGTGGCTCAATCGCGATAAG+AGG + chr1_1:20996997-20997016 Msa0013550:CDS 50.0%
AGGATTGTTGGCGCTATTCC+TGG + chr1_1:20997017-20997036 Msa0013550:CDS 50.0%
GGATTGTTGGCGCTATTCCT+GGG + chr1_1:20997018-20997037 Msa0013550:CDS 50.0%
AGGATGGAGTTGTGTGTGGT+TGG + chr1_1:20997068-20997087 Msa0013550:CDS 50.0%
TTACATGGTCAACCACAGGC+TGG + chr1_1:20997092-20997111 Msa0013550:CDS 50.0%
TACATGGTCAACCACAGGCT+GGG + chr1_1:20997093-20997112 Msa0013550:CDS 50.0%
CCATTCGAACTCATACTCCC+CGG - chr1_1:20997131-20997150 None:intergenic 50.0%
GTGGGCAGGATAAGAATTCG+AGG + chr1_1:20997237-20997256 Msa0013550:CDS 50.0%
GCAGGATAAGAATTCGAGGC+AGG + chr1_1:20997241-20997260 Msa0013550:CDS 50.0%
GGAAGGTGGGAATCTTGCTA+TGG + chr1_1:20997280-20997299 Msa0013550:CDS 50.0%
! GTGGGAATCTTGCTATGGAG+AGG + chr1_1:20997285-20997304 Msa0013550:CDS 50.0%
TTAGGGTTATTCGCGGTGTG+AGG + chr1_1:20997330-20997349 Msa0013550:CDS 50.0%
ATTCGCGGTGTGAGGTATGA+AGG + chr1_1:20997338-20997357 Msa0013550:CDS 50.0%
! GTATGGAGCGTGTCGGTATA+AGG + chr1_1:20997588-20997607 Msa0013550:CDS 50.0%
CATGAAAGTGGGAATGCGAC+AGG + chr1_1:20997692-20997711 Msa0013550:CDS 50.0%
! CAAAGCGGGCTTCTCTTGAA+AGG + chr1_1:20997788-20997807 Msa0013550:CDS 50.0%
TGAGGCGGACAACTACAAGA+AGG - chr1_1:20997839-20997858 None:intergenic 50.0%
GTAGTTGTCCGCCTCATTGT+CGG + chr1_1:20997843-20997862 Msa0013550:CDS 50.0%
GTAACACGGTTCCGACAATG+AGG - chr1_1:20997857-20997876 None:intergenic 50.0%
CGGAACCGTGTTACGCAAAA+AGG + chr1_1:20997863-20997882 Msa0013550:CDS 50.0%
! AGATCTAGGGAGACTGGTTG+GGG + chr1_1:20997911-20997930 Msa0013550:CDS 50.0%
TGGTTGGGGAGTTAGGTCAT+TGG + chr1_1:20997925-20997944 Msa0013550:CDS 50.0%
TTTCGAACAGGTGGACGGAA+TGG + chr1_1:20998059-20998078 Msa0013550:CDS 50.0%
TTCGAACAGGTGGACGGAAT+GGG + chr1_1:20998060-20998079 Msa0013550:CDS 50.0%
GCAAGCCACATTCCTCATTC+TGG - chr1_1:20998167-20998186 None:intergenic 50.0%
GGCTGAACTCTCTCAATGGA+GGG - chr1_1:20998294-20998313 None:intergenic 50.0%
AGGCTGAACTCTCTCAATGG+AGG - chr1_1:20998295-20998314 None:intergenic 50.0%
!! GGGGTGCTGATGGAAATGTT+TGG - chr1_1:20996413-20996432 None:intergenic 50.0%
TTACACCGAAGCAAGAGCCT+CGG + chr1_1:20996454-20996473 Msa0013550:CDS 50.0%
! GGTGGTGGTTGGTTGTTCTA+GGG - chr1_1:20996580-20996599 None:intergenic 50.0%
!! TGGTGGTGGTTGGTTGTTCT+AGG - chr1_1:20996581-20996600 None:intergenic 50.0%
! ATCCTTCAGTGAAGGAGCGT+CGG - chr1_1:20996650-20996669 None:intergenic 50.0%
TACAATAATGCCCCTCCTGC+TGG + chr1_1:20996762-20996781 Msa0013550:CDS 50.0%
ACATTCACAACCTCACCAGC+AGG - chr1_1:20996780-20996799 None:intergenic 50.0%
TACCGGATCAGCGTCAGTTT+CGG + chr1_1:20996841-20996860 Msa0013550:CDS 50.0%
TCTACTACGATGAGGAGTCG+AGG + chr1_1:20996972-20996991 Msa0013550:CDS 50.0%
TGTGGCTCAATCGCGATAAG+AGG + chr1_1:20996997-20997016 Msa0013550:CDS 50.0%
AGGATTGTTGGCGCTATTCC+TGG + chr1_1:20997017-20997036 Msa0013550:CDS 50.0%
GGATTGTTGGCGCTATTCCT+GGG + chr1_1:20997018-20997037 Msa0013550:CDS 50.0%
AGGATGGAGTTGTGTGTGGT+TGG + chr1_1:20997068-20997087 Msa0013550:CDS 50.0%
TTACATGGTCAACCACAGGC+TGG + chr1_1:20997092-20997111 Msa0013550:CDS 50.0%
TACATGGTCAACCACAGGCT+GGG + chr1_1:20997093-20997112 Msa0013550:CDS 50.0%
CCATTCGAACTCATACTCCC+CGG - chr1_1:20997131-20997150 None:intergenic 50.0%
GTGGGCAGGATAAGAATTCG+AGG + chr1_1:20997237-20997256 Msa0013550:CDS 50.0%
GCAGGATAAGAATTCGAGGC+AGG + chr1_1:20997241-20997260 Msa0013550:CDS 50.0%
GGAAGGTGGGAATCTTGCTA+TGG + chr1_1:20997280-20997299 Msa0013550:CDS 50.0%
! GTGGGAATCTTGCTATGGAG+AGG + chr1_1:20997285-20997304 Msa0013550:CDS 50.0%
TTAGGGTTATTCGCGGTGTG+AGG + chr1_1:20997330-20997349 Msa0013550:CDS 50.0%
ATTCGCGGTGTGAGGTATGA+AGG + chr1_1:20997338-20997357 Msa0013550:CDS 50.0%
! GTATGGAGCGTGTCGGTATA+AGG + chr1_1:20997588-20997607 Msa0013550:CDS 50.0%
CATGAAAGTGGGAATGCGAC+AGG + chr1_1:20997692-20997711 Msa0013550:CDS 50.0%
! CAAAGCGGGCTTCTCTTGAA+AGG + chr1_1:20997788-20997807 Msa0013550:CDS 50.0%
TGAGGCGGACAACTACAAGA+AGG - chr1_1:20997839-20997858 None:intergenic 50.0%
GTAGTTGTCCGCCTCATTGT+CGG + chr1_1:20997843-20997862 Msa0013550:CDS 50.0%
GTAACACGGTTCCGACAATG+AGG - chr1_1:20997857-20997876 None:intergenic 50.0%
CGGAACCGTGTTACGCAAAA+AGG + chr1_1:20997863-20997882 Msa0013550:CDS 50.0%
! AGATCTAGGGAGACTGGTTG+GGG + chr1_1:20997911-20997930 Msa0013550:CDS 50.0%
TGGTTGGGGAGTTAGGTCAT+TGG + chr1_1:20997925-20997944 Msa0013550:CDS 50.0%
TTTCGAACAGGTGGACGGAA+TGG + chr1_1:20998059-20998078 Msa0013550:CDS 50.0%
TTCGAACAGGTGGACGGAAT+GGG + chr1_1:20998060-20998079 Msa0013550:CDS 50.0%
GCAAGCCACATTCCTCATTC+TGG - chr1_1:20998167-20998186 None:intergenic 50.0%
GGCTGAACTCTCTCAATGGA+GGG - chr1_1:20998294-20998313 None:intergenic 50.0%
AGGCTGAACTCTCTCAATGG+AGG - chr1_1:20998295-20998314 None:intergenic 50.0%
ACATTTCCATCAGCACCCCC+TGG + chr1_1:20996414-20996433 Msa0013550:CDS 55.0%
TACACCGAAGCAAGAGCCTC+GGG + chr1_1:20996455-20996474 Msa0013550:CDS 55.0%
TCATCCCGAGGCTCTTGCTT+CGG - chr1_1:20996462-20996481 None:intergenic 55.0%
!! TCTTGCGTTGGTTCATCCCG+AGG - chr1_1:20996474-20996493 None:intergenic 55.0%
GAACAACCAACCACCACCAC+CGG + chr1_1:20996582-20996601 Msa0013550:CDS 55.0%
CATCGACGCCGCTAAAATGG+CGG + chr1_1:20996617-20996636 Msa0013550:CDS 55.0%
TTCCGACGCTCCTTCACTGA+AGG + chr1_1:20996645-20996664 Msa0013550:CDS 55.0%
GCTATTGTTCCGGTTCCTGC+TGG + chr1_1:20996729-20996748 Msa0013550:CDS 55.0%
TCACAACCTCACCAGCAGGA+GGG - chr1_1:20996776-20996795 None:intergenic 55.0%
TTCACAACCTCACCAGCAGG+AGG - chr1_1:20996777-20996796 None:intergenic 55.0%
ACCGGATCAGCGTCAGTTTC+GGG + chr1_1:20996842-20996861 Msa0013550:CDS 55.0%
TCCCGAAACTGACGCTGATC+CGG - chr1_1:20996846-20996865 None:intergenic 55.0%
GTCAGTTTCGGGACGTTGTC+AGG + chr1_1:20996853-20996872 Msa0013550:CDS 55.0%
AGTTTCGGGACGTTGTCAGG+AGG + chr1_1:20996856-20996875 Msa0013550:CDS 55.0%
CGATGAGGAGTCGAGGATTG+TGG + chr1_1:20996979-20996998 Msa0013550:CDS 55.0%
! CCGGGGAGTATGAGTTCGAA+TGG + chr1_1:20997128-20997147 Msa0013550:CDS 55.0%
! TCCAAGGGTATGGAGCGTGT+CGG + chr1_1:20997581-20997600 Msa0013550:CDS 55.0%
ACACGGTTCCGACAATGAGG+CGG - chr1_1:20997854-20997873 None:intergenic 55.0%
ACACCGGGGTTGTTCTGACA+AGG + chr1_1:20997981-20998000 Msa0013550:CDS 55.0%
CACCGGGGTTGTTCTGACAA+GGG + chr1_1:20997982-20998001 Msa0013550:CDS 55.0%
CTCCCTTGTCAGAACAACCC+CGG - chr1_1:20997987-20998006 None:intergenic 55.0%
TCGAACAGGTGGACGGAATG+GGG + chr1_1:20998061-20998080 Msa0013550:CDS 55.0%
ACATTTCCATCAGCACCCCC+TGG + chr1_1:20996414-20996433 Msa0013550:CDS 55.0%
TACACCGAAGCAAGAGCCTC+GGG + chr1_1:20996455-20996474 Msa0013550:CDS 55.0%
TCATCCCGAGGCTCTTGCTT+CGG - chr1_1:20996462-20996481 None:intergenic 55.0%
!! TCTTGCGTTGGTTCATCCCG+AGG - chr1_1:20996474-20996493 None:intergenic 55.0%
GAACAACCAACCACCACCAC+CGG + chr1_1:20996582-20996601 Msa0013550:CDS 55.0%
CATCGACGCCGCTAAAATGG+CGG + chr1_1:20996617-20996636 Msa0013550:CDS 55.0%
TTCCGACGCTCCTTCACTGA+AGG + chr1_1:20996645-20996664 Msa0013550:CDS 55.0%
GCTATTGTTCCGGTTCCTGC+TGG + chr1_1:20996729-20996748 Msa0013550:CDS 55.0%
TCACAACCTCACCAGCAGGA+GGG - chr1_1:20996776-20996795 None:intergenic 55.0%
TTCACAACCTCACCAGCAGG+AGG - chr1_1:20996777-20996796 None:intergenic 55.0%
ACCGGATCAGCGTCAGTTTC+GGG + chr1_1:20996842-20996861 Msa0013550:CDS 55.0%
TCCCGAAACTGACGCTGATC+CGG - chr1_1:20996846-20996865 None:intergenic 55.0%
GTCAGTTTCGGGACGTTGTC+AGG + chr1_1:20996853-20996872 Msa0013550:CDS 55.0%
AGTTTCGGGACGTTGTCAGG+AGG + chr1_1:20996856-20996875 Msa0013550:CDS 55.0%
CGATGAGGAGTCGAGGATTG+TGG + chr1_1:20996979-20996998 Msa0013550:CDS 55.0%
! CCGGGGAGTATGAGTTCGAA+TGG + chr1_1:20997128-20997147 Msa0013550:CDS 55.0%
! TCCAAGGGTATGGAGCGTGT+CGG + chr1_1:20997581-20997600 Msa0013550:CDS 55.0%
ACACGGTTCCGACAATGAGG+CGG - chr1_1:20997854-20997873 None:intergenic 55.0%
ACACCGGGGTTGTTCTGACA+AGG + chr1_1:20997981-20998000 Msa0013550:CDS 55.0%
CACCGGGGTTGTTCTGACAA+GGG + chr1_1:20997982-20998001 Msa0013550:CDS 55.0%
CTCCCTTGTCAGAACAACCC+CGG - chr1_1:20997987-20998006 None:intergenic 55.0%
TCGAACAGGTGGACGGAATG+GGG + chr1_1:20998061-20998080 Msa0013550:CDS 55.0%
!! GGAATACCAGGGGGTGCTGA+TGG - chr1_1:20996423-20996442 None:intergenic 60.0%
!! CGGCATCGACGCCGCTAAAA+TGG + chr1_1:20996614-20996633 Msa0013550:CDS 60.0%
TAATGCCCCTCCTGCTGGTG+AGG + chr1_1:20996767-20996786 Msa0013550:CDS 60.0%
CACAACCTCACCAGCAGGAG+GGG - chr1_1:20996775-20996794 None:intergenic 60.0%
CGTTGTCAGGAGGACGAGGA+TGG + chr1_1:20996866-20996885 Msa0013550:CDS 60.0%
!! TTACTCGGGTCATGGTGGGC+AGG + chr1_1:20997223-20997242 Msa0013550:CDS 60.0%
ACCGACACGCTCCATACCCT+TGG - chr1_1:20997585-20997604 None:intergenic 60.0%
! GGGAGACTGGTTGGGGAGTT+AGG + chr1_1:20997918-20997937 Msa0013550:CDS 60.0%
!! GGAATACCAGGGGGTGCTGA+TGG - chr1_1:20996423-20996442 None:intergenic 60.0%
!! CGGCATCGACGCCGCTAAAA+TGG + chr1_1:20996614-20996633 Msa0013550:CDS 60.0%
TAATGCCCCTCCTGCTGGTG+AGG + chr1_1:20996767-20996786 Msa0013550:CDS 60.0%
CACAACCTCACCAGCAGGAG+GGG - chr1_1:20996775-20996794 None:intergenic 60.0%
CGTTGTCAGGAGGACGAGGA+TGG + chr1_1:20996866-20996885 Msa0013550:CDS 60.0%
!! TTACTCGGGTCATGGTGGGC+AGG + chr1_1:20997223-20997242 Msa0013550:CDS 60.0%
ACCGACACGCTCCATACCCT+TGG - chr1_1:20997585-20997604 None:intergenic 60.0%
! GGGAGACTGGTTGGGGAGTT+AGG + chr1_1:20997918-20997937 Msa0013550:CDS 60.0%
GGGACGTTGTCAGGAGGACG+AGG + chr1_1:20996862-20996881 Msa0013550:CDS 65.0%
GGGACGTTGTCAGGAGGACG+AGG + chr1_1:20996862-20996881 Msa0013550:CDS 65.0%
CCAACCACCACCACCGGCGC+CGG + chr1_1:20996588-20996607 Msa0013550:CDS 75.0%
!! AGCGGCGTCGATGCCGACGC+CGG - chr1_1:20996610-20996629 None:intergenic 75.0%
CCAACCACCACCACCGGCGC+CGG + chr1_1:20996588-20996607 Msa0013550:CDS 75.0%
!! AGCGGCGTCGATGCCGACGC+CGG - chr1_1:20996610-20996629 None:intergenic 75.0%
!!! CCGGCGCCGGTGGTGGTGGT+TGG - chr1_1:20996591-20996610 None:intergenic 80.0%
!!! ACCACCACCGGCGCCGGCGT+CGG + chr1_1:20996594-20996613 Msa0013550:CDS 80.0%
! GTCGATGCCGACGCCGGCGC+CGG - chr1_1:20996604-20996623 None:intergenic 80.0%
!!! CCGGCGCCGGTGGTGGTGGT+TGG - chr1_1:20996591-20996610 None:intergenic 80.0%
!!! ACCACCACCGGCGCCGGCGT+CGG + chr1_1:20996594-20996613 Msa0013550:CDS 80.0%
! GTCGATGCCGACGCCGGCGC+CGG - chr1_1:20996604-20996623 None:intergenic 80.0%
!!! GACGCCGGCGCCGGTGGTGG+TGG - chr1_1:20996595-20996614 None:intergenic 85.0%
!! GATGCCGACGCCGGCGCCGG+TGG - chr1_1:20996601-20996620 None:intergenic 85.0%
!!! GACGCCGGCGCCGGTGGTGG+TGG - chr1_1:20996595-20996614 None:intergenic 85.0%
!! GATGCCGACGCCGGCGCCGG+TGG - chr1_1:20996601-20996620 None:intergenic 85.0%
!!! GCCGACGCCGGCGCCGGTGG+TGG - chr1_1:20996598-20996617 None:intergenic 90.0%
!!! GCCGACGCCGGCGCCGGTGG+TGG - chr1_1:20996598-20996617 None:intergenic 90.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 20996390 20998369 20996390 ID=Msa0013550;Name=Msa0013550
chr1_1 mRNA 20996390 20998369 20996390 ID=Msa0013550-mRNA-1;Parent=Msa0013550;Name=Msa0013550-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|-1|0|1|-1|1|1|0|659
chr1_1 exon 20996390 20998369 20996390 ID=Msa0013550-mRNA-1:exon:7477;Parent=Msa0013550-mRNA-1
chr1_1 CDS 20996390 20998369 20996390 ID=Msa0013550-mRNA-1:cds;Parent=Msa0013550-mRNA-1
Gene Sequence

>Msa0013550

ATGAATCCTCATAATCCAAACCAAACATTTCCATCAGCACCCCCTGGTATTCCTTTTCCTATGCTTACACCGAAGCAAGAGCCTCGGGATGAACCAACGCAAGAATTTCAATATCCAAACCTAGAAAATTTACCGAACCAAAATCTAAACCTAAATCTAAGTCTGAACCTAGATTTTGTTTCTCAAGCCCTAGAACAACCAACCACCACCACCGGCGCCGGCGTCGGCATCGACGCCGCTAAAATGGCGGAGATTTTCCGACGCTCCTTCACTGAAGGATTACAACGACAGATTCAAAACAATGATGCTGTTGATGAAAATCCAGATGCAAATGCAAGAGCTATTGTTCCGGTTCCTGCTGGTGAGAATAATTACAATAATGCCCCTCCTGCTGGTGAGGTTGTGAATGTACGGAAACATAAAGAGCTTGTTCGAATGACTGATGTTGGGTTACCGGATCAGCGTCAGTTTCGGGACGTTGTCAGGAGGACGAGGATGGTTTATGATTCGGTTCGTGTTTTGGCTATGGCTGAAGAAGAAGGGAATTTTAATGTTAGGAGAGTGAGAAGTGATTTGAAAGCTTCTACTACGATGAGGAGTCGAGGATTGTGGCTCAATCGCGATAAGAGGATTGTTGGCGCTATTCCTGGGATTTGTATTGGTGATGTGTTTTTGTATAGGATGGAGTTGTGTGTGGTTGGTTTACATGGTCAACCACAGGCTGGGATTGATTATTTGCCGGGGAGTATGAGTTCGAATGGTGAACCGATTGCTACTAGTGTGATTGTTTCTGGTGGGTATGAGGATGATGTTGATGAAGGTGATGTTATTATTTACTCGGGTCATGGTGGGCAGGATAAGAATTCGAGGCAGGTTTTTCATCAGAAGCTGGAAGGTGGGAATCTTGCTATGGAGAGGAGTATGCATTATGGAATCGAGGTTAGGGTTATTCGCGGTGTGAGGTATGAAGGTACTTCTTCGACTTCGGGTAAGGTTTATGTTTATGATGGTTTGTATAGGATTATTGAATGCTGGTTTGATGTTGGTAAAAGTGGTTTTGGTGTTTTTAAGTTTAAGTTATGGAGGATTGATGGTCAAGCTAAGATGGGTAGTTTGATTTTAAAGGAGGCTTTTTTGCTTAGGAGAGATCCTTTGTGTTATAAACCTATGTGTGTTATATCTCTTGATATTTCCAAGGGTATGGAGCGTGTCGGTATAAGGCTTTTTAATGATATTGATAAATGTAATGATCCGATGTGTTTTGAGTATCTTCCTAGGGCTACTTTTCCACACTTCGTGTTTCATGAAAGTGGGAATGCGACAGGTTGTCAATGTGAGAGCTTTTGTGGAGAAGGATGTTTTTGCTTCATAAAAAATGGAAATGACTTTCCTTATAGTCAAAGCGGGCTTCTCTTGAAAGGAAAGCCGGTCATTTTTGAATGTGGTCCTTCTTGTAGTTGTCCGCCTCATTGTCGGAACCGTGTTACGCAAAAAGGGCTTAAACATAGGTTGGAAGTGTTTAGATCTAGGGAGACTGGTTGGGGAGTTAGGTCATTGGACCTTATTCAAGCTGGTGCATTTATATGCGAGTACACCGGGGTTGTTCTGACAAGGGAGCAATCAGAAATTATGACCATGAGTGGTGATTCATTAATATATCCGAATCGTTTTTCGAACAGGTGGACGGAATGGGGTAATTTATCTCTGATTCAAGATGGTTATGTGCCTCCTTCGTATCCATCAATTCCTCCTTTGGATTTTTCTCTTGATGTGTCCAGAATGAGGAATGTGGCTTGCTATATAAGTCATAGCTCAACTCCTAATGTGATGGTTCAGTTTGTTTTGTATGATCATAATAATTTGATGTTCCCTCACATTATGCTGTTTGCGATGGAGAACATCCCTCCATTGAGAGAGTTCAGCCTTGATTATGGTGTAGCTGATGATGAGTTGACTGGCAAGCTCGTAATATGCAACTGA
Protein sequence

>Msa0013550

MNPHNPNQTFPSAPPGIPFPMLTPKQEPRDEPTQEFQYPNLENLPNQNLNLNLSLNLDFVSQALEQPTTTTGAGVGIDAAKMAEIFRRSFTEGLQRQIQNNDAVDENPDANARAIVPVPAGENNYNNAPPAGEVVNVRKHKELVRMTDVGLPDQRQFRDVVRRTRMVYDSVRVLAMAEEEGNFNVRRVRSDLKASTTMRSRGLWLNRDKRIVGAIPGICIGDVFLYRMELCVVGLHGQPQAGIDYLPGSMSSNGEPIATSVIVSGGYEDDVDEGDVIIYSGHGGQDKNSRQVFHQKLEGGNLAMERSMHYGIEVRVIRGVRYEGTSSTSGKVYVYDGLYRIIECWFDVGKSGFGVFKFKLWRIDGQAKMGSLILKEAFLLRRDPLCYKPMCVISLDISKGMERVGIRLFNDIDKCNDPMCFEYLPRATFPHFVFHESGNATGCQCESFCGEGCFCFIKNGNDFPYSQSGLLLKGKPVIFECGPSCSCPPHCRNRVTQKGLKHRLEVFRSRETGWGVRSLDLIQAGAFICEYTGVVLTREQSEIMTMSGDSLIYPNRFSNRWTEWGNLSLIQDGYVPPSYPSIPPLDFSLDVSRMRNVACYISHSSTPNVMVQFVLYDHNNLMFPHIMLFAMENIPPLREFSLDYGVADDELTGKLVICN*