Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0013560 | XP_024636868.1 | 76.453 | 327 | 74 | 1 | 1 | 327 | 1 | 324 | 0.0 | 524 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0013560 | sp|Q8L3W1|VRN1_ARATH | 24.773 | 331 | 204 | 11 | 15 | 307 | 6 | 329 | 1.40e-19 | 91.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0013560 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0013560 | MtrunA17_Chr4g0067431 | 76.453 | 327 | 74 | 1 | 1 | 327 | 1 | 324 | 0.0 | 524 |
| Msa0013560 | MtrunA17_Chr1g0163221 | 62.500 | 328 | 97 | 6 | 1 | 327 | 1 | 303 | 6.26e-125 | 362 |
| Msa0013560 | MtrunA17_Chr1g0163061 | 74.340 | 265 | 25 | 1 | 1 | 222 | 1 | 265 | 4.17e-114 | 332 |
| Msa0013560 | MtrunA17_Chr6g0467351 | 63.248 | 234 | 77 | 1 | 1 | 234 | 1 | 225 | 2.11e-102 | 300 |
| Msa0013560 | MtrunA17_Chr6g0467361 | 63.218 | 87 | 32 | 0 | 236 | 322 | 8 | 94 | 5.31e-36 | 125 |
| Msa0013560 | MtrunA17_Chr1g0163071 | 29.114 | 316 | 189 | 10 | 31 | 328 | 2 | 300 | 7.18e-35 | 129 |
| Msa0013560 | MtrunA17_Chr8g0390841 | 30.861 | 337 | 190 | 13 | 13 | 331 | 37 | 348 | 1.33e-32 | 127 |
| Msa0013560 | MtrunA17_Chr3g0103181 | 30.065 | 306 | 174 | 11 | 13 | 314 | 10 | 279 | 6.39e-30 | 115 |
| Msa0013560 | MtrunA17_Chr1g0208771 | 26.198 | 313 | 204 | 11 | 30 | 331 | 12 | 308 | 2.09e-29 | 117 |
| Msa0013560 | MtrunA17_Chr1g0163251 | 28.707 | 317 | 189 | 12 | 15 | 327 | 9 | 292 | 5.06e-28 | 112 |
| Msa0013560 | MtrunA17_Chr7g0233561 | 29.773 | 309 | 170 | 9 | 13 | 300 | 16 | 298 | 7.72e-28 | 110 |
| Msa0013560 | MtrunA17_Chr1g0163261 | 28.155 | 309 | 194 | 9 | 15 | 322 | 9 | 290 | 1.83e-27 | 109 |
| Msa0013560 | MtrunA17_Chr3g0131891 | 30.868 | 311 | 189 | 10 | 9 | 314 | 13 | 302 | 2.24e-27 | 109 |
| Msa0013560 | MtrunA17_Chr3g0103151 | 38.710 | 155 | 90 | 4 | 13 | 165 | 10 | 161 | 2.07e-26 | 102 |
| Msa0013560 | MtrunA17_Chr1g0163131 | 30.449 | 312 | 190 | 12 | 12 | 313 | 15 | 309 | 7.22e-26 | 105 |
| Msa0013560 | MtrunA17_Chr1g0163181 | 26.901 | 342 | 198 | 12 | 1 | 327 | 1 | 305 | 3.93e-25 | 105 |
| Msa0013560 | MtrunA17_Chr3g0103191 | 29.572 | 257 | 149 | 9 | 11 | 265 | 8 | 234 | 1.31e-21 | 92.4 |
| Msa0013560 | MtrunA17_Chr3g0103171 | 28.028 | 289 | 176 | 9 | 30 | 314 | 5 | 265 | 3.13e-21 | 91.7 |
| Msa0013560 | MtrunA17_Chr1g0163201 | 26.103 | 272 | 182 | 7 | 30 | 300 | 18 | 271 | 3.33e-21 | 93.6 |
| Msa0013560 | MtrunA17_Chr7g0233571 | 43.689 | 103 | 57 | 1 | 13 | 115 | 8 | 109 | 5.11e-20 | 87.0 |
| Msa0013560 | MtrunA17_Chr7g0233541 | 26.144 | 306 | 192 | 10 | 31 | 322 | 2 | 287 | 2.25e-19 | 87.0 |
| Msa0013560 | MtrunA17_Chr1g0163231 | 24.756 | 307 | 185 | 12 | 15 | 313 | 9 | 277 | 2.59e-19 | 86.7 |
| Msa0013560 | MtrunA17_Chr7g0233521 | 26.471 | 306 | 174 | 9 | 31 | 322 | 2 | 270 | 8.98e-19 | 85.1 |
| Msa0013560 | MtrunA17_Chr5g0419201 | 32.192 | 146 | 90 | 2 | 15 | 152 | 16 | 160 | 5.72e-18 | 80.9 |
| Msa0013560 | MtrunA17_Chr1g0163101 | 40.777 | 103 | 57 | 3 | 12 | 114 | 14 | 112 | 1.01e-17 | 79.7 |
| Msa0013560 | MtrunA17_Chr7g0233531 | 26.510 | 298 | 184 | 8 | 31 | 322 | 2 | 270 | 2.29e-17 | 80.9 |
| Msa0013560 | MtrunA17_Chr1g0171611 | 24.430 | 307 | 174 | 9 | 15 | 313 | 9 | 265 | 5.13e-17 | 80.1 |
| Msa0013560 | MtrunA17_Chr1g0154161 | 22.727 | 308 | 178 | 9 | 13 | 300 | 28 | 295 | 7.98e-17 | 80.1 |
| Msa0013560 | MtrunA17_Chr1g0163081 | 36.364 | 121 | 66 | 4 | 31 | 144 | 6 | 122 | 2.65e-16 | 75.1 |
| Msa0013560 | MtrunA17_Chr1g0154131 | 25.329 | 304 | 167 | 12 | 26 | 304 | 193 | 461 | 3.94e-16 | 79.0 |
| Msa0013560 | MtrunA17_Chr1g0162161 | 44.048 | 84 | 43 | 3 | 31 | 114 | 4 | 83 | 3.23e-15 | 72.4 |
| Msa0013560 | MtrunA17_Chr1g0154111 | 24.405 | 336 | 202 | 13 | 13 | 304 | 24 | 351 | 5.16e-15 | 75.9 |
| Msa0013560 | MtrunA17_Chr3g0077411 | 23.871 | 310 | 169 | 11 | 1 | 300 | 251 | 503 | 8.48e-15 | 75.1 |
| Msa0013560 | MtrunA17_Chr3g0077411 | 30.769 | 104 | 71 | 1 | 14 | 117 | 24 | 126 | 4.51e-11 | 63.9 |
| Msa0013560 | MtrunA17_Chr1g0163191 | 36.036 | 111 | 64 | 3 | 24 | 130 | 14 | 121 | 8.97e-15 | 71.2 |
| Msa0013560 | MtrunA17_Chr1g0154191 | 24.085 | 328 | 204 | 11 | 13 | 300 | 20 | 342 | 1.22e-14 | 73.9 |
| Msa0013560 | MtrunA17_Chr1g0163121 | 34.959 | 123 | 69 | 5 | 29 | 144 | 9 | 127 | 1.49e-14 | 70.1 |
| Msa0013560 | MtrunA17_Chr1g0163241 | 32.653 | 147 | 76 | 6 | 15 | 149 | 15 | 150 | 3.69e-14 | 69.7 |
| Msa0013560 | MtrunA17_Chr1g0154171 | 24.242 | 330 | 189 | 11 | 13 | 300 | 21 | 331 | 5.24e-14 | 72.0 |
| Msa0013560 | MtrunA17_Chr6g0476181 | 41.667 | 84 | 45 | 3 | 31 | 114 | 2 | 81 | 1.20e-13 | 68.2 |
| Msa0013560 | MtrunA17_Chr1g0154151 | 24.756 | 307 | 191 | 10 | 16 | 300 | 13 | 301 | 1.35e-13 | 70.9 |
| Msa0013560 | MtrunA17_Chr3g0077461 | 23.667 | 300 | 161 | 6 | 14 | 313 | 236 | 467 | 8.43e-13 | 68.9 |
| Msa0013560 | MtrunA17_Chr1g0163141 | 40.698 | 86 | 47 | 3 | 29 | 114 | 9 | 90 | 1.98e-12 | 65.1 |
| Msa0013560 | MtrunA17_Chr3g0103201 | 26.908 | 249 | 142 | 10 | 74 | 314 | 4 | 220 | 3.11e-12 | 65.1 |
| Msa0013560 | MtrunA17_Chr1g0154041 | 23.851 | 348 | 214 | 15 | 14 | 319 | 15 | 353 | 8.15e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0013560 | AT3G18990.1 | 24.773 | 331 | 204 | 11 | 15 | 307 | 6 | 329 | 1.42e-20 | 91.3 |
| Msa0013560 | AT3G18990.2 | 24.773 | 331 | 204 | 11 | 15 | 307 | 6 | 329 | 1.97e-20 | 91.3 |
| Msa0013560 | AT3G18960.1 | 34.314 | 102 | 66 | 1 | 15 | 116 | 30 | 130 | 5.83e-16 | 75.9 |
| Msa0013560 | AT3G18960.2 | 34.314 | 102 | 66 | 1 | 15 | 116 | 30 | 130 | 6.63e-16 | 75.5 |
| Msa0013560 | AT1G49475.1 | 37.931 | 116 | 70 | 2 | 15 | 130 | 34 | 147 | 1.34e-15 | 74.7 |
| Msa0013560 | AT4G01580.1 | 31.373 | 102 | 69 | 1 | 15 | 116 | 30 | 130 | 1.45e-14 | 71.6 |
| Msa0013560 | AT3G18960.3 | 35.632 | 87 | 55 | 1 | 30 | 116 | 8 | 93 | 3.54e-12 | 64.3 |
Find 42 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCACAATAATTTGAAATT+TGG | 0.147270 | 1_1:+21005715 | Msa0013560:CDS |
| TCTTCGATAGTTTCTCTTAA+AGG | 0.186987 | 1_1:-21004410 | None:intergenic |
| AAAACAAATACCTTCAAAAT+AGG | 0.198463 | 1_1:-21005827 | None:intergenic |
| GAACTTAATCATCGGATTAT+TGG | 0.205327 | 1_1:+21003880 | Msa0013560:CDS |
| CATCCTATGCAGATGTTTCT+TGG | 0.218396 | 1_1:-21005581 | None:intergenic |
| TTTGGAAGCCTTAGAGTAAC+TGG | 0.276749 | 1_1:-21004203 | None:intergenic |
| CTTCGATAGTTTCTCTTAAA+GGG | 0.279640 | 1_1:-21004409 | None:intergenic |
| AAATCTCCATTACCGTCTTC+TGG | 0.299311 | 1_1:+21004509 | Msa0013560:CDS |
| CTTCATTGCAACGAGGTAAA+AGG | 0.379920 | 1_1:+21004483 | Msa0013560:CDS |
| AATAGCAACTTGGAATGAAA+TGG | 0.399456 | 1_1:-21005776 | None:intergenic |
| CAGTTCTTTGAAAATTGTTA+AGG | 0.399825 | 1_1:+21004457 | Msa0013560:CDS |
| AGACTAGTCACCATGTTGTT+TGG | 0.408078 | 1_1:+21004255 | Msa0013560:CDS |
| AAACAAATACCTTCAAAATA+GGG | 0.411333 | 1_1:-21005826 | None:intergenic |
| TAACAAACCCAGTTACTCTA+AGG | 0.418513 | 1_1:+21004195 | Msa0013560:CDS |
| AAATCTTCAAGAAGGAAAAC+TGG | 0.419117 | 1_1:+21003933 | Msa0013560:CDS |
| TGCCCATAAGTTTCGTGAAA+AGG | 0.442811 | 1_1:+21004159 | Msa0013560:CDS |
| AATAATCAATATACATTAAG+TGG | 0.456541 | 1_1:+21005673 | Msa0013560:CDS |
| ATCTTTAACGTGATTGTATG+TGG | 0.460806 | 1_1:+21004362 | Msa0013560:CDS |
| TCACTTTATCATACAAAACT+TGG | 0.467338 | 1_1:-21004801 | None:intergenic |
| CCAGAGAGAAAATAGCAACT+TGG | 0.469913 | 1_1:-21005786 | None:intergenic |
| TGTTTCTTGGCAAATTCAAA+TGG | 0.474706 | 1_1:-21005568 | None:intergenic |
| GAAACTCCAGAAGACGGTAA+TGG | 0.495209 | 1_1:-21004515 | None:intergenic |
| AATATACATTAAGTGGTGGT+TGG | 0.506646 | 1_1:+21005680 | Msa0013560:CDS |
| GCATAGGATGGAAGGAAGAA+AGG | 0.511502 | 1_1:+21005594 | Msa0013560:CDS |
| CTTCAAACAAATCTTCAAGA+AGG | 0.513344 | 1_1:+21003925 | Msa0013560:CDS |
| TAAGTTTCGTGAAAAGGCAT+TGG | 0.531413 | 1_1:+21004165 | Msa0013560:CDS |
| GCAGGGGATACTCTCAATGT+TGG | 0.550780 | 1_1:+21006993 | Msa0013560:intron |
| AAACATCTGCATAGGATGGA+AGG | 0.551037 | 1_1:+21005586 | Msa0013560:CDS |
| ATACATTAAAAGAGATCTCA+TGG | 0.552062 | 1_1:+21004876 | Msa0013560:CDS |
| TTGTTGATCAAGACAAGACA+TGG | 0.566622 | 1_1:+21005626 | Msa0013560:CDS |
| CTTCTCAAGAACTTAATCAT+CGG | 0.572545 | 1_1:+21003872 | Msa0013560:CDS |
| TTGCCAAGAAACATCTGCAT+AGG | 0.573034 | 1_1:+21005578 | Msa0013560:CDS |
| AACTATCGAAGAATATGAAG+AGG | 0.576513 | 1_1:+21004421 | Msa0013560:CDS |
| ATGTTGGCTCGAATTTGTGA+AGG | 0.591046 | 1_1:+21007009 | Msa0013560:CDS |
| TTGGAAGCCTTAGAGTAACT+GGG | 0.602286 | 1_1:-21004202 | None:intergenic |
| CAAGAAACATCTGCATAGGA+TGG | 0.605752 | 1_1:+21005582 | Msa0013560:CDS |
| TTCGTGAAAAGGCATTGGCA+AGG | 0.614166 | 1_1:+21004170 | Msa0013560:CDS |
| TTCTTAGAAACTCCAGAAGA+CGG | 0.624055 | 1_1:-21004521 | None:intergenic |
| AATCAATATACATTAAGTGG+TGG | 0.631074 | 1_1:+21005676 | Msa0013560:CDS |
| CATCGCAAAACCAAACAACA+TGG | 0.646479 | 1_1:-21004265 | None:intergenic |
| GTGATTGTATGTGGTAAATG+CGG | 0.713782 | 1_1:+21004371 | Msa0013560:CDS |
| AAGGATCCTTCATTGCAACG+AGG | 0.769771 | 1_1:+21004476 | Msa0013560:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAGGAATATAATAAAATA+TGG | + | chr1_1:21004015-21004034 | Msa0013560:intron | 10.0% |
| !!! | TTATTTTATAAAGTTTACTT+AGG | + | chr1_1:21004094-21004113 | Msa0013560:intron | 10.0% |
| !!! | TTTTTTTTGTTCTTTTTTTT+AGG | + | chr1_1:21004692-21004711 | Msa0013560:intron | 10.0% |
| !!! | CTTTATATTTGTTTTTTTTT+TGG | + | chr1_1:21004723-21004742 | Msa0013560:intron | 10.0% |
| !!! | TAGATATATTTTTTTTTTGA+AGG | - | chr1_1:21005144-21005163 | None:intergenic | 10.0% |
| !! | TAAATATGAATTGCAAAATT+AGG | + | chr1_1:21003998-21004017 | Msa0013560:intron | 15.0% |
| !! | CTCAAAAAAAAAAACTTTAT+TGG | - | chr1_1:21005042-21005061 | None:intergenic | 15.0% |
| !!! | ATAAAGTTTTTTTTTTTGAG+AGG | + | chr1_1:21005042-21005061 | Msa0013560:intron | 15.0% |
| !! | ATTATATGGTATAACTTTAT+TGG | - | chr1_1:21005075-21005094 | None:intergenic | 15.0% |
| !! | TATATTAAAGTAGCATTATA+TGG | - | chr1_1:21005089-21005108 | None:intergenic | 15.0% |
| !! | AAAAAAATATATCTACATGA+TGG | + | chr1_1:21005149-21005168 | Msa0013560:intron | 15.0% |
| !! | AATAATCAATATACATTAAG+TGG | + | chr1_1:21005673-21005692 | Msa0013560:CDS | 15.0% |
| !! | ATCATTTATATATTTGCATT+TGG | - | chr1_1:21006346-21006365 | None:intergenic | 15.0% |
| !! | TAAGTTAGTAGTATTAATTA+GGG | - | chr1_1:21006522-21006541 | None:intergenic | 15.0% |
| !! | ATAAGTTAGTAGTATTAATT+AGG | - | chr1_1:21006523-21006542 | None:intergenic | 15.0% |
| !! | TTTAATACATATACAAACAA+AGG | + | chr1_1:21006564-21006583 | Msa0013560:intron | 15.0% |
| !! | GATTAATTGTCATATACTAA+TGG | + | chr1_1:21004994-21005013 | Msa0013560:intron | 20.0% |
| !!! | TGAATGCGATTTTTTTTTTT+TGG | - | chr1_1:21005473-21005492 | None:intergenic | 20.0% |
| !! | AAAACCAATAATCAAAATCA+GGG | + | chr1_1:21005541-21005560 | Msa0013560:intron | 20.0% |
| !! | AAACAAATACCTTCAAAATA+GGG | - | chr1_1:21005829-21005848 | None:intergenic | 20.0% |
| !! | AAAACAAATACCTTCAAAAT+AGG | - | chr1_1:21005830-21005849 | None:intergenic | 20.0% |
| !! | AGATGGAAATAGAAAATTAA+CGG | - | chr1_1:21005863-21005882 | None:intergenic | 20.0% |
| !! | TTACACAATAAAGTAAAAGA+TGG | - | chr1_1:21005880-21005899 | None:intergenic | 20.0% |
| !!! | AATTAAGAGTGTACAATATA+AGG | + | chr1_1:21006056-21006075 | Msa0013560:intron | 20.0% |
| !!! | ATTAAGAGTGTACAATATAA+GGG | + | chr1_1:21006057-21006076 | Msa0013560:intron | 20.0% |
| !! | ACTATGACATATTCAAAATT+TGG | + | chr1_1:21006287-21006306 | Msa0013560:intron | 20.0% |
| !! | AAGTTAGTAGTATTAATTAG+GGG | - | chr1_1:21006521-21006540 | None:intergenic | 20.0% |
| !! | TTAACCAATGATATTAAACA+AGG | + | chr1_1:21006697-21006716 | Msa0013560:intron | 20.0% |
| !!! | CTATGAAAAATTTCTAGTTT+TGG | + | chr1_1:21006830-21006849 | Msa0013560:intron | 20.0% |
| !! | TATCATGACTATTGTTTAAT+GGG | - | chr1_1:21006895-21006914 | None:intergenic | 20.0% |
| !! | ATATCATGACTATTGTTTAA+TGG | - | chr1_1:21006896-21006915 | None:intergenic | 20.0% |
| !! | TCATCATGAATTAATTATGT+TGG | + | chr1_1:21006969-21006988 | Msa0013560:intron | 20.0% |
| ! | GAAGAATAATCTTGAAAAAG+TGG | - | chr1_1:21003909-21003928 | None:intergenic | 25.0% |
| !!! | GACTGAAAAGAAAGTTTTTT+GGG | + | chr1_1:21004229-21004248 | Msa0013560:CDS | 25.0% |
| !! | CAGTTCTTTGAAAATTGTTA+AGG | + | chr1_1:21004457-21004476 | Msa0013560:CDS | 25.0% |
| !! | TGCAAGATTTCGTAATTTTA+AGG | + | chr1_1:21004607-21004626 | Msa0013560:CDS | 25.0% |
| !!! | ATTTCGTAATTTTAAGGATG+TGG | + | chr1_1:21004613-21004632 | Msa0013560:CDS | 25.0% |
| ! | TCACTTTATCATACAAAACT+TGG | - | chr1_1:21004804-21004823 | None:intergenic | 25.0% |
| !! | CTCTTTTAATGTATGTCATT+TGG | - | chr1_1:21004870-21004889 | None:intergenic | 25.0% |
| ! | ATACATTAAAAGAGATCTCA+TGG | + | chr1_1:21004876-21004895 | Msa0013560:CDS | 25.0% |
| ! | TATGACAATTAATCTCGTTA+AGG | - | chr1_1:21004988-21005007 | None:intergenic | 25.0% |
| !!! | AGCTCACACAATTTTTTTTT+TGG | - | chr1_1:21005430-21005449 | None:intergenic | 25.0% |
| ! | GAAAACCAATAATCAAAATC+AGG | + | chr1_1:21005540-21005559 | Msa0013560:intron | 25.0% |
| !!! | TATACCCTGATTTTGATTAT+TGG | - | chr1_1:21005548-21005567 | None:intergenic | 25.0% |
| ! | AATCAATATACATTAAGTGG+TGG | + | chr1_1:21005676-21005695 | Msa0013560:CDS | 25.0% |
| !! | GCTCACAATAATTTGAAATT+TGG | + | chr1_1:21005715-21005734 | Msa0013560:CDS | 25.0% |
| !! | TTATCTCTTTTGGTATAGAA+TGG | - | chr1_1:21005945-21005964 | None:intergenic | 25.0% |
| !!! | CTCTCTATTTTTATCTCTTT+TGG | - | chr1_1:21005955-21005974 | None:intergenic | 25.0% |
| ! | TAAGTGATGTGATATGAATA+GGG | + | chr1_1:21005996-21006015 | Msa0013560:intron | 25.0% |
| ! | TAAAACGCTAAATGAATGTA+AGG | + | chr1_1:21006032-21006051 | Msa0013560:intron | 25.0% |
| ! | GATATATTTCCATAAGGAAA+TGG | - | chr1_1:21006242-21006261 | None:intergenic | 25.0% |
| ! | ATGATGTAAAACTACAACTA+TGG | - | chr1_1:21006266-21006285 | None:intergenic | 25.0% |
| ! | CAAAAATAAAGTCAAATGAG+TGG | - | chr1_1:21006436-21006455 | None:intergenic | 25.0% |
| ! | TGCATCTAGTAATTTGAAAA+GGG | - | chr1_1:21006474-21006493 | None:intergenic | 25.0% |
| ! | ATGCATCTAGTAATTTGAAA+AGG | - | chr1_1:21006475-21006494 | None:intergenic | 25.0% |
| ! | TATACAAACAAAGGACAATA+TGG | + | chr1_1:21006573-21006592 | Msa0013560:intron | 25.0% |
| ! | AAGAAATGTGAAAAAAGCAA+AGG | + | chr1_1:21006646-21006665 | Msa0013560:intron | 25.0% |
| ! | AGAAATGTGAAAAAAGCAAA+GGG | + | chr1_1:21006647-21006666 | Msa0013560:intron | 25.0% |
| !!! | TTTGCCTTGTTTAATATCAT+TGG | - | chr1_1:21006704-21006723 | None:intergenic | 25.0% |
| CTTCTCAAGAACTTAATCAT+CGG | + | chr1_1:21003872-21003891 | Msa0013560:CDS | 30.0% | |
| GAACTTAATCATCGGATTAT+TGG | + | chr1_1:21003880-21003899 | Msa0013560:CDS | 30.0% | |
| CTTCAAACAAATCTTCAAGA+AGG | + | chr1_1:21003925-21003944 | Msa0013560:CDS | 30.0% | |
| AAATCTTCAAGAAGGAAAAC+TGG | + | chr1_1:21003933-21003952 | Msa0013560:CDS | 30.0% | |
| !!! | CGACTGAAAAGAAAGTTTTT+TGG | + | chr1_1:21004228-21004247 | Msa0013560:CDS | 30.0% |
| ATCTTTAACGTGATTGTATG+TGG | + | chr1_1:21004362-21004381 | Msa0013560:CDS | 30.0% | |
| CTTCGATAGTTTCTCTTAAA+GGG | - | chr1_1:21004412-21004431 | None:intergenic | 30.0% | |
| TCTTCGATAGTTTCTCTTAA+AGG | - | chr1_1:21004413-21004432 | None:intergenic | 30.0% | |
| AACTATCGAAGAATATGAAG+AGG | + | chr1_1:21004421-21004440 | Msa0013560:CDS | 30.0% | |
| !! | AATTTTAAGGATGTGGACAA+TGG | + | chr1_1:21004620-21004639 | Msa0013560:CDS | 30.0% |
| GAATTACTCAATTTCTTAGC+AGG | + | chr1_1:21004748-21004767 | Msa0013560:intron | 30.0% | |
| GACATTGCATAATTTATGCA+GGG | + | chr1_1:21005302-21005321 | Msa0013560:intron | 30.0% | |
| ACATTGCATAATTTATGCAG+GGG | + | chr1_1:21005303-21005322 | Msa0013560:intron | 30.0% | |
| ACAATTAATTGTGGAGAAGT+GGG | - | chr1_1:21005351-21005370 | None:intergenic | 30.0% | |
| TGTTTCTTGGCAAATTCAAA+TGG | - | chr1_1:21005571-21005590 | None:intergenic | 30.0% | |
| AATATACATTAAGTGGTGGT+TGG | + | chr1_1:21005680-21005699 | Msa0013560:CDS | 30.0% | |
| AATAGCAACTTGGAATGAAA+TGG | - | chr1_1:21005779-21005798 | None:intergenic | 30.0% | |
| GTAAGTGATGTGATATGAAT+AGG | + | chr1_1:21005995-21006014 | Msa0013560:intron | 30.0% | |
| !! | TTTGATCGATTTCTAAAGTG+TGG | - | chr1_1:21006121-21006140 | None:intergenic | 30.0% |
| AACAATACTCCATTTCCTTA+TGG | + | chr1_1:21006230-21006249 | Msa0013560:intron | 30.0% | |
| TATGGCGATATATTTCCATA+AGG | - | chr1_1:21006248-21006267 | None:intergenic | 30.0% | |
| CAAATGAGTGGTTAGATATA+GGG | - | chr1_1:21006424-21006443 | None:intergenic | 30.0% | |
| TCAAATGAGTGGTTAGATAT+AGG | - | chr1_1:21006425-21006444 | None:intergenic | 30.0% | |
| GCATCTAGTAATTTGAAAAG+GGG | - | chr1_1:21006473-21006492 | None:intergenic | 30.0% | |
| ! | TATTAATTAGGGGTATGCTT+AGG | - | chr1_1:21006511-21006530 | None:intergenic | 30.0% |
| TGAATTAATTATGTTGGTGC+AGG | + | chr1_1:21006975-21006994 | Msa0013560:intron | 30.0% | |
| GAATTAATTATGTTGGTGCA+GGG | + | chr1_1:21006976-21006995 | Msa0013560:intron | 30.0% | |
| AATTAATTATGTTGGTGCAG+GGG | + | chr1_1:21006977-21006996 | Msa0013560:intron | 30.0% | |
| ! | TGCCTTTTCACGAAACTTAT+GGG | - | chr1_1:21004164-21004183 | None:intergenic | 35.0% |
| ! | ATGCCTTTTCACGAAACTTA+TGG | - | chr1_1:21004165-21004184 | None:intergenic | 35.0% |
| ! | TAAGTTTCGTGAAAAGGCAT+TGG | + | chr1_1:21004165-21004184 | Msa0013560:CDS | 35.0% |
| TAACAAACCCAGTTACTCTA+AGG | + | chr1_1:21004195-21004214 | Msa0013560:CDS | 35.0% | |
| ! | ACTTTCTTTTCAGTCGTGTT+TGG | - | chr1_1:21004224-21004243 | None:intergenic | 35.0% |
| GTGATTGTATGTGGTAAATG+CGG | + | chr1_1:21004371-21004390 | Msa0013560:CDS | 35.0% | |
| TTCTTAGAAACTCCAGAAGA+CGG | - | chr1_1:21004524-21004543 | None:intergenic | 35.0% | |
| !! | TCTACATGATGGATTGTGAT+TGG | + | chr1_1:21005160-21005179 | Msa0013560:intron | 35.0% |
| GGACATTGCATAATTTATGC+AGG | + | chr1_1:21005301-21005320 | Msa0013560:intron | 35.0% | |
| CAATTAATTGTGGAGAAGTG+GGG | - | chr1_1:21005350-21005369 | None:intergenic | 35.0% | |
| CACAATTAATTGTGGAGAAG+TGG | - | chr1_1:21005352-21005371 | None:intergenic | 35.0% | |
| AGAGCTCACACAATTAATTG+TGG | - | chr1_1:21005360-21005379 | None:intergenic | 35.0% | |
| TTGTTGATCAAGACAAGACA+TGG | + | chr1_1:21005626-21005645 | Msa0013560:CDS | 35.0% | |
| !!! | TGCTATTTTCTCTCTGGAAA+AGG | + | chr1_1:21005792-21005811 | Msa0013560:CDS | 35.0% |
| !! | ATGAACACTCCCTATTTTGA+AGG | + | chr1_1:21005817-21005836 | Msa0013560:CDS | 35.0% |
| CAAAGAATGAGAGTTAGAGA+AGG | + | chr1_1:21006175-21006194 | Msa0013560:intron | 35.0% | |
| AATGAGAGTTAGAGAAGGTT+AGG | + | chr1_1:21006180-21006199 | Msa0013560:intron | 35.0% | |
| AAACGTTCCAATCAAGCATA+AGG | + | chr1_1:21006366-21006385 | Msa0013560:intron | 35.0% | |
| AATTCCACCTTATGCTTGAT+TGG | - | chr1_1:21006376-21006395 | None:intergenic | 35.0% | |
| AATGTGAAAAAAGCAAAGGG+AGG | + | chr1_1:21006650-21006669 | Msa0013560:intron | 35.0% | |
| ACAAGGCAAATGTTAACCTA+TGG | + | chr1_1:21006714-21006733 | Msa0013560:intron | 35.0% | |
| CAAGGCAAATGTTAACCTAT+GGG | + | chr1_1:21006715-21006734 | Msa0013560:intron | 35.0% | |
| TAACCTATGGGCATATGTTA+AGG | + | chr1_1:21006727-21006746 | Msa0013560:intron | 35.0% | |
| ATTCCTTAACATATGCCCAT+AGG | - | chr1_1:21006733-21006752 | None:intergenic | 35.0% | |
| TTTACGACCTCTTTGAGTGT+AGG | + | chr1_1:21004038-21004057 | Msa0013560:intron | 40.0% | |
| TGCCCATAAGTTTCGTGAAA+AGG | + | chr1_1:21004159-21004178 | Msa0013560:CDS | 40.0% | |
| TTGGAAGCCTTAGAGTAACT+GGG | - | chr1_1:21004205-21004224 | None:intergenic | 40.0% | |
| TTTGGAAGCCTTAGAGTAAC+TGG | - | chr1_1:21004206-21004225 | None:intergenic | 40.0% | |
| ! | AGACTAGTCACCATGTTGTT+TGG | + | chr1_1:21004255-21004274 | Msa0013560:CDS | 40.0% |
| CATCGCAAAACCAAACAACA+TGG | - | chr1_1:21004268-21004287 | None:intergenic | 40.0% | |
| !!! | CATGTTGTTTGGTTTTGCGA+TGG | + | chr1_1:21004266-21004285 | Msa0013560:CDS | 40.0% |
| !!! | TTGTTTGGTTTTGCGATGGT+TGG | + | chr1_1:21004270-21004289 | Msa0013560:CDS | 40.0% |
| ! | CTTTTACCTCGTTGCAATGA+AGG | - | chr1_1:21004485-21004504 | None:intergenic | 40.0% |
| CTTCATTGCAACGAGGTAAA+AGG | + | chr1_1:21004483-21004502 | Msa0013560:CDS | 40.0% | |
| AAATCTCCATTACCGTCTTC+TGG | + | chr1_1:21004509-21004528 | Msa0013560:CDS | 40.0% | |
| TTAAGGATGTGGACAATGGT+TGG | + | chr1_1:21004624-21004643 | Msa0013560:intron | 40.0% | |
| !! | TTTTTGGTCTAGTAGCCTAG+TGG | - | chr1_1:21005414-21005433 | None:intergenic | 40.0% |
| !! | TTTTTGGTCTAGTAGCCTAG+TGG | - | chr1_1:21005414-21005433 | None:intergenic | 40.0% |
| TTGCCAAGAAACATCTGCAT+AGG | + | chr1_1:21005578-21005597 | Msa0013560:CDS | 40.0% | |
| CATCCTATGCAGATGTTTCT+TGG | - | chr1_1:21005584-21005603 | None:intergenic | 40.0% | |
| CAAGAAACATCTGCATAGGA+TGG | + | chr1_1:21005582-21005601 | Msa0013560:CDS | 40.0% | |
| AAACATCTGCATAGGATGGA+AGG | + | chr1_1:21005586-21005605 | Msa0013560:CDS | 40.0% | |
| CCAGAGAGAAAATAGCAACT+TGG | - | chr1_1:21005789-21005808 | None:intergenic | 40.0% | |
| !!! | CCAAGTTGCTATTTTCTCTC+TGG | + | chr1_1:21005786-21005805 | Msa0013560:CDS | 40.0% |
| TGAGTGGTTAGATATAGGGA+CGG | - | chr1_1:21006420-21006439 | None:intergenic | 40.0% | |
| AGCAAAGGGAGGTTACATTA+AGG | + | chr1_1:21006661-21006680 | Msa0013560:intron | 40.0% | |
| GCAAAGGGAGGTTACATTAA+GGG | + | chr1_1:21006662-21006681 | Msa0013560:intron | 40.0% | |
| !! | ATTCCTTAACTTGTGCCCTA+AGG | + | chr1_1:21006853-21006872 | Msa0013560:intron | 40.0% |
| !! | TTCCTTAACTTGTGCCCTAA+GGG | + | chr1_1:21006854-21006873 | Msa0013560:intron | 40.0% |
| ! | CTTGTTATCTTGTGCCCTTA+GGG | - | chr1_1:21006871-21006890 | None:intergenic | 40.0% |
| ! | TCTTGTTATCTTGTGCCCTT+AGG | - | chr1_1:21006872-21006891 | None:intergenic | 40.0% |
| TCATCGACCTACACTCAAAG+AGG | - | chr1_1:21004048-21004067 | None:intergenic | 45.0% | |
| !! | TTCGTGAAAAGGCATTGGCA+AGG | + | chr1_1:21004170-21004189 | Msa0013560:CDS | 45.0% |
| AAGGATCCTTCATTGCAACG+AGG | + | chr1_1:21004476-21004495 | Msa0013560:CDS | 45.0% | |
| GAAACTCCAGAAGACGGTAA+TGG | - | chr1_1:21004518-21004537 | None:intergenic | 45.0% | |
| TACCAACTGAGCTAAGGTCA+CGG | - | chr1_1:21005280-21005299 | None:intergenic | 45.0% | |
| ! | TGACCTTAGCTCAGTTGGTA+GGG | + | chr1_1:21005280-21005299 | Msa0013560:intron | 45.0% |
| TGCATAATTTATGCAGGGGC+CGG | + | chr1_1:21005307-21005326 | Msa0013560:intron | 45.0% | |
| GCATAGGATGGAAGGAAGAA+AGG | + | chr1_1:21005594-21005613 | Msa0013560:CDS | 45.0% | |
| CGTTCCAATCAAGCATAAGG+TGG | + | chr1_1:21006369-21006388 | Msa0013560:intron | 45.0% | |
| TGGTTAGATATAGGGACGGA+GGG | - | chr1_1:21006416-21006435 | None:intergenic | 45.0% | |
| AGGGAGGTTACATTAAGGGA+CGG | + | chr1_1:21006666-21006685 | Msa0013560:intron | 45.0% | |
| AGGTTACATTAAGGGACGGA+AGG | + | chr1_1:21006670-21006689 | Msa0013560:intron | 45.0% | |
| !!! | TTTATATTTGTTTTTTTTTT+GGG | + | chr1_1:21004724-21004743 | Msa0013560:intron | 5.0% |
| ACCAACTGAGCTAAGGTCAC+GGG | - | chr1_1:21005279-21005298 | None:intergenic | 50.0% | |
| GTGACCTTAGCTCAGTTGGT+AGG | + | chr1_1:21005279-21005298 | Msa0013560:intron | 50.0% | |
| TGTCCCTACCAACTGAGCTA+AGG | - | chr1_1:21005286-21005305 | None:intergenic | 50.0% | |
| GCATAATTTATGCAGGGGCC+GGG | + | chr1_1:21005308-21005327 | Msa0013560:intron | 50.0% | |
| CATAATTTATGCAGGGGCCG+GGG | + | chr1_1:21005309-21005328 | Msa0013560:intron | 50.0% | |
| ! | TTGTGTGAGCTCTAGCCACT+AGG | + | chr1_1:21005367-21005386 | Msa0013560:intron | 50.0% |
| ! | TTGTGTGAGCTCTAGCCACT+AGG | + | chr1_1:21005367-21005386 | Msa0013560:intron | 50.0% |
| GTGGTTAGATATAGGGACGG+AGG | - | chr1_1:21006417-21006436 | None:intergenic | 50.0% | |
| TGCCCTTAGGGCACAAGTTA+AGG | - | chr1_1:21006859-21006878 | None:intergenic | 50.0% | |
| GCAGGGGATACTCTCAATGT+TGG | + | chr1_1:21006993-21007012 | Msa0013560:intron | 50.0% | |
| TCCCGTGACCTTAGCTCAGT+TGG | + | chr1_1:21005275-21005294 | Msa0013560:intron | 55.0% | |
| ! | TTGTGGAGAAGTGGGGTGTC+CGG | - | chr1_1:21005343-21005362 | None:intergenic | 55.0% |
| CTCACGGTCTAGTAGCCTAG+TGG | - | chr1_1:21005385-21005404 | None:intergenic | 55.0% | |
| AGCCTAGTGGCTAGAGCTCA+CGG | - | chr1_1:21005372-21005391 | None:intergenic | 55.0% | |
| ! | TGTGGAGAAGTGGGGTGTCC+GGG | - | chr1_1:21005342-21005361 | None:intergenic | 60.0% |
| ! | GACCGTGAGCTCTAGCCACT+AGG | + | chr1_1:21005396-21005415 | Msa0013560:intron | 60.0% |
| ! | GTGGAGAAGTGGGGTGTCCG+GGG | - | chr1_1:21005341-21005360 | None:intergenic | 65.0% |
| GGTGTCCGGGGTTCGAACCC+CGG | - | chr1_1:21005329-21005348 | None:intergenic | 70.0% | |
| AGGGGCCGGGGTTCGAACCC+CGG | + | chr1_1:21005321-21005340 | Msa0013560:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 21003868 | 21007028 | 21003868 | ID=Msa0013560;Name=Msa0013560 |
| chr1_1 | mRNA | 21003868 | 21007028 | 21003868 | ID=Msa0013560-mRNA-1;Parent=Msa0013560;Name=Msa0013560-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|0.8|1|1|5|0|336 |
| chr1_1 | exon | 21003868 | 21003954 | 21003868 | ID=Msa0013560-mRNA-1:exon:7461;Parent=Msa0013560-mRNA-1 |
| chr1_1 | exon | 21004155 | 21004641 | 21004155 | ID=Msa0013560-mRNA-1:exon:7462;Parent=Msa0013560-mRNA-1 |
| chr1_1 | exon | 21004770 | 21004897 | 21004770 | ID=Msa0013560-mRNA-1:exon:7463;Parent=Msa0013560-mRNA-1 |
| chr1_1 | exon | 21005562 | 21005838 | 21005562 | ID=Msa0013560-mRNA-1:exon:7464;Parent=Msa0013560-mRNA-1 |
| chr1_1 | exon | 21006997 | 21007028 | 21006997 | ID=Msa0013560-mRNA-1:exon:7465;Parent=Msa0013560-mRNA-1 |
| chr1_1 | CDS | 21003868 | 21003954 | 21003868 | ID=Msa0013560-mRNA-1:cds;Parent=Msa0013560-mRNA-1 |
| chr1_1 | CDS | 21004155 | 21004641 | 21004155 | ID=Msa0013560-mRNA-1:cds;Parent=Msa0013560-mRNA-1 |
| chr1_1 | CDS | 21004770 | 21004897 | 21004770 | ID=Msa0013560-mRNA-1:cds;Parent=Msa0013560-mRNA-1 |
| chr1_1 | CDS | 21005562 | 21005838 | 21005562 | ID=Msa0013560-mRNA-1:cds;Parent=Msa0013560-mRNA-1 |
| chr1_1 | CDS | 21006997 | 21007028 | 21006997 | ID=Msa0013560-mRNA-1:cds;Parent=Msa0013560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
