AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0013570

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0013570 MtrunA17_Chr1g0163071 91.060 302 23 1 32 333 1 298 0.0 540
Msa0013570 MtrunA17_Chr1g0208771 46.288 458 218 11 33 478 13 454 1.20e-123 373
Msa0013570 MtrunA17_Chr8g0390841 42.032 502 231 14 13 477 35 513 1.14e-117 360
Msa0013570 MtrunA17_Chr1g0163081 84.354 147 22 1 474 620 1 146 2.44e-85 263
Msa0013570 MtrunA17_Chr1g0163081 36.283 113 65 4 32 140 5 114 9.48e-12 63.2
Msa0013570 MtrunA17_Chr1g0162161 74.497 149 34 1 476 620 1 149 3.43e-73 232
Msa0013570 MtrunA17_Chr1g0162161 33.929 112 67 3 32 139 3 111 6.56e-11 61.2
Msa0013570 MtrunA17_Chr1g0163101 72.414 145 38 2 478 620 32 176 6.74e-68 219
Msa0013570 MtrunA17_Chr1g0163101 34.028 144 87 4 12 150 12 152 3.63e-15 73.9
Msa0013570 MtrunA17_Chr1g0163121 70.345 145 36 1 476 620 8 145 1.30e-64 209
Msa0013570 MtrunA17_Chr1g0163121 36.522 115 66 4 31 141 9 120 1.75e-12 65.5
Msa0013570 MtrunA17_Chr1g0163131 67.376 141 41 2 478 614 33 172 5.64e-60 202
Msa0013570 MtrunA17_Chr1g0163131 28.972 321 184 11 12 318 13 303 4.86e-23 100
Msa0013570 MtrunA17_Chr6g0476181 60.366 164 39 3 478 620 1 159 2.53e-58 192
Msa0013570 MtrunA17_Chr6g0476181 37.607 117 67 4 32 147 1 112 6.32e-12 64.3
Msa0013570 MtrunA17_Chr1g0163141 60.241 166 43 2 478 620 10 175 2.42e-57 191
Msa0013570 MtrunA17_Chr1g0163141 39.362 94 51 3 31 121 9 99 1.20e-11 63.9
Msa0013570 MtrunA17_Chr1g0163161 68.148 135 37 3 491 620 1 134 1.66e-55 184
Msa0013570 MtrunA17_Chr3g0131891 36.697 327 154 10 12 322 14 303 3.34e-53 185
Msa0013570 MtrunA17_Chr3g0131891 38.532 109 63 3 478 583 34 141 3.62e-11 65.1
Msa0013570 MtrunA17_Chr7g0233561 32.219 329 170 6 15 322 16 312 9.39e-48 170
Msa0013570 MtrunA17_Chr7g0233561 41.053 95 53 2 479 570 34 128 4.48e-11 64.7
Msa0013570 MtrunA17_Chr7g0233541 33.227 313 154 8 32 322 1 280 3.35e-47 167
Msa0013570 MtrunA17_Chr7g0233541 43.182 88 47 2 478 562 1 88 6.99e-11 63.9
Msa0013570 MtrunA17_Chr7g0233521 34.437 302 148 8 32 322 1 263 5.81e-46 164
Msa0013570 MtrunA17_Chr7g0233521 39.048 105 61 2 478 579 1 105 4.79e-11 63.9
Msa0013570 MtrunA17_Chr3g0103181 32.915 319 161 9 11 321 6 279 4.73e-45 161
Msa0013570 MtrunA17_Chr3g0103181 27.273 275 159 9 234 478 13 276 2.50e-19 88.6
Msa0013570 MtrunA17_Chr3g0103181 33.858 127 76 4 466 589 13 134 5.20e-11 63.9
Msa0013570 MtrunA17_Chr7g0233531 32.450 302 154 8 32 322 1 263 4.42e-41 150
Msa0013570 MtrunA17_Chr7g0233531 40.625 96 54 2 478 570 1 96 4.66e-11 63.9
Msa0013570 MtrunA17_Chr3g0103191 34.686 271 138 8 11 281 6 237 7.49e-41 149
Msa0013570 MtrunA17_Chr3g0103191 35.714 140 77 4 466 602 13 142 1.26e-13 71.2
Msa0013570 MtrunA17_Chr4g0033961 29.426 401 199 13 17 335 6 404 8.36e-41 154
Msa0013570 MtrunA17_Chr3g0103171 29.966 297 163 7 33 321 6 265 2.89e-37 139
Msa0013570 MtrunA17_Chr3g0103171 25.869 259 160 7 250 478 6 262 4.94e-16 78.6
Msa0013570 MtrunA17_Chr3g0103171 36.207 116 66 3 474 586 1 111 1.89e-14 73.9
Msa0013570 MtrunA17_Chr4g0067431 30.514 331 198 11 12 330 10 320 3.13e-36 138
Msa0013570 MtrunA17_Chr4g0067431 35.915 142 75 6 479 611 31 165 1.37e-16 81.3
Msa0013570 MtrunA17_Chr1g0163181 26.856 458 269 12 25 469 13 417 1.86e-35 139
Msa0013570 MtrunA17_Chr1g0163181 35.714 154 81 5 479 614 21 174 2.16e-20 94.4
Msa0013570 MtrunA17_Chr3g0103151 41.176 153 86 3 15 167 10 158 6.04e-33 124
Msa0013570 MtrunA17_Chr3g0103151 35.938 128 72 4 466 589 13 134 1.79e-14 71.6
Msa0013570 MtrunA17_Chr7g0233571 32.314 229 130 5 17 243 10 215 1.56e-31 122
Msa0013570 MtrunA17_Chr7g0233571 44.792 96 50 2 478 570 25 120 2.43e-14 72.8
Msa0013570 MtrunA17_Chr1g0154041 23.247 542 310 15 31 469 29 567 7.73e-29 121
Msa0013570 MtrunA17_Chr1g0163221 29.538 325 192 9 12 330 6 299 4.49e-28 115
Msa0013570 MtrunA17_Chr1g0163261 26.462 325 194 6 16 333 8 294 7.48e-28 114
Msa0013570 MtrunA17_Chr1g0163261 47.059 85 44 1 479 562 25 109 3.26e-18 85.9
Msa0013570 MtrunA17_Chr1g0163201 23.179 453 259 9 33 478 19 389 3.69e-26 111
Msa0013570 MtrunA17_Chr1g0163201 43.820 89 49 1 479 566 19 107 8.77e-18 85.9
Msa0013570 MtrunA17_Chr5g0419201 33.143 175 100 3 1 167 1 166 1.40e-25 104
Msa0013570 MtrunA17_Chr5g0419201 33.813 139 78 5 464 591 15 150 7.23e-15 73.6
Msa0013570 MtrunA17_Chr1g0163251 27.523 327 189 10 25 339 13 303 2.61e-24 105
Msa0013570 MtrunA17_Chr1g0163251 51.685 89 42 1 479 566 21 109 1.82e-22 100
Msa0013570 MtrunA17_Chr3g0103201 29.528 254 135 8 75 321 4 220 5.91e-24 100
Msa0013570 MtrunA17_Chr3g0103201 39.024 123 68 5 360 478 98 217 7.51e-14 71.2
Msa0013570 MtrunA17_Chr3g0077411 21.521 539 315 14 17 488 25 522 1.92e-22 101
Msa0013570 MtrunA17_Chr3g0077411 25.460 326 157 9 14 321 259 516 1.92e-22 101
Msa0013570 MtrunA17_Chr1g0163241 45.161 93 50 1 475 566 19 111 3.50e-21 90.9
Msa0013570 MtrunA17_Chr1g0163241 40.964 83 47 1 33 115 23 103 6.62e-14 70.1
Msa0013570 MtrunA17_Chr5g0429931 27.000 300 141 9 33 322 11 242 4.52e-21 93.2
Msa0013570 MtrunA17_Chr1g0163231 38.686 137 77 2 479 614 25 155 6.35e-21 93.6
Msa0013570 MtrunA17_Chr1g0163231 22.540 315 187 10 17 320 9 277 2.36e-17 83.2
Msa0013570 MtrunA17_Chr6g0467351 32.278 158 93 3 15 171 13 157 2.57e-20 90.5
Msa0013570 MtrunA17_Chr6g0467351 42.857 84 44 3 479 558 31 114 4.07e-13 69.3
Msa0013570 MtrunA17_Chr3g0077451 27.119 295 148 7 31 325 10 237 4.98e-20 89.7
Msa0013570 MtrunA17_Chr1g0171611 47.191 89 46 1 479 566 25 113 5.81e-20 90.9
Msa0013570 MtrunA17_Chr1g0171611 34.343 99 63 1 17 115 9 105 3.06e-14 73.9
Msa0013570 MtrunA17_Chr1g0163191 40.777 103 58 2 479 580 21 121 7.45e-19 84.0
Msa0013570 MtrunA17_Chr1g0163191 41.758 91 51 1 25 115 13 101 3.18e-17 79.3
Msa0013570 MtrunA17_Chr3g0103161 39.669 121 68 3 361 478 2 120 8.67e-18 80.1
Msa0013570 MtrunA17_Chr1g0162441 33.813 139 79 2 17 145 7 142 9.98e-18 86.3
Msa0013570 MtrunA17_Chr1g0162441 28.000 175 114 4 164 326 222 396 5.40e-17 84.0
Msa0013570 MtrunA17_Chr3g0077461 26.689 296 132 9 20 310 241 456 1.91e-17 85.5
Msa0013570 MtrunA17_Chr3g0077461 22.822 482 292 17 33 476 23 462 1.32e-15 79.7
Msa0013570 MtrunA17_Chr1g0154071 26.415 318 202 8 31 319 169 483 3.86e-17 84.7
Msa0013570 MtrunA17_Chr1g0154161 23.585 318 193 10 15 321 28 306 5.62e-15 76.6
Msa0013570 MtrunA17_Chr1g0154171 22.258 310 217 8 30 318 35 341 1.31e-14 75.9
Msa0013570 MtrunA17_Chr1g0162411 30.435 138 83 3 17 145 7 140 2.67e-14 75.5
Msa0013570 MtrunA17_Chr1g0163061 35.514 107 62 2 15 117 13 116 3.81e-14 73.2
Msa0013570 MtrunA17_Chr1g0163061 42.857 84 44 2 479 558 31 114 6.41e-12 66.6
Msa0013570 MtrunA17_Chr3g0077381 37.931 87 54 0 31 117 34 120 1.11e-13 73.6
Msa0013570 MtrunA17_Chr4g0009491 31.667 120 76 1 31 144 11 130 7.12e-13 70.9
Msa0013570 MtrunA17_Chr4g0009491 29.139 151 78 3 20 170 229 350 2.31e-11 66.2
Msa0013570 MtrunA17_Chr1g0163091 30.702 114 71 3 228 333 17 130 1.46e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0013570 AT3G18990.1 28.940 349 193 13 17 325 6 339 4.49e-35 135
Msa0013570 AT3G18990.1 34.906 106 64 3 375 478 230 332 3.88e-12 68.6
Msa0013570 AT3G18990.2 28.653 349 194 13 17 325 6 339 2.07e-34 135
Msa0013570 AT3G18990.2 34.906 106 64 3 375 478 230 332 5.23e-12 68.6
Msa0013570 AT4G01580.1 35.714 140 79 3 16 151 29 161 1.59e-19 87.4
Msa0013570 AT3G18960.2 35.922 103 66 0 16 118 29 131 7.30e-18 82.8
Msa0013570 AT3G18960.1 35.922 103 66 0 16 118 29 131 9.94e-18 82.8
Msa0013570 AT1G49475.1 34.815 135 77 4 16 141 33 165 1.27e-15 76.3
Msa0013570 AT4G33280.1 25.163 306 200 10 30 325 36 322 2.84e-15 77.8
Msa0013570 AT1G49480.3 31.081 148 94 5 185 325 78 224 4.08e-15 75.5
Msa0013570 AT1G49480.3 34.906 106 64 3 375 478 115 217 6.24e-13 68.9
Msa0013570 AT1G49480.1 31.081 148 94 5 185 325 78 224 4.08e-15 75.5
Msa0013570 AT1G49480.1 34.906 106 64 3 375 478 115 217 6.24e-13 68.9
Msa0013570 AT1G49480.2 31.081 148 94 5 185 325 78 224 4.08e-15 75.5
Msa0013570 AT1G49480.2 34.906 106 64 3 375 478 115 217 6.24e-13 68.9
Msa0013570 AT3G18960.3 39.535 86 52 0 33 118 9 94 8.65e-15 73.2

Find 100 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAACTCATTTGGAAGTTTA+AGG 0.107062 1_1:+21017868 None:intergenic
GTAGAGGTTGGAAGCTATTT+TGG 0.155141 1_1:-21019330 Msa0013570:CDS
TACAACGTGGTTATGATATT+TGG 0.190744 1_1:-21017827 Msa0013570:CDS
AATCAAATAATCCTTCTTTC+AGG 0.198997 1_1:-21020454 Msa0013570:CDS
AACTCTTGGATGGGAGAGTT+TGG 0.242668 1_1:-21020230 Msa0013570:CDS
GGACACATAATTGGTGATTT+TGG 0.244060 1_1:+21020782 None:intergenic
TGTATTAGATGATAGTAAAT+TGG 0.248691 1_1:-21017715 Msa0013570:CDS
TAATTTGTAATGAAGGAATT+TGG 0.257343 1_1:+21019451 None:intergenic
GTACACAACAAGTTGAAAAT+TGG 0.262789 1_1:-21020156 Msa0013570:CDS
CATGATGCTTAGGCAAGTTT+TGG 0.267797 1_1:+21020699 None:intergenic
AGTTTAAGTGCAAAATGTTT+TGG 0.269541 1_1:-21017851 Msa0013570:CDS
GAATAACAATGCAACTTTAC+AGG 0.277076 1_1:+21019376 None:intergenic
TTTGGAAGTTTAAGGGATAT+TGG 0.281020 1_1:+21017876 None:intergenic
CAGATGGTGATGTTAAAGTT+TGG 0.294860 1_1:-21019412 Msa0013570:CDS
CTAGAATGCCCTCGTTGATT+TGG 0.297882 1_1:+21019604 None:intergenic
AGCTTTCCATCTTGAAGAAT+TGG 0.312657 1_1:+21021715 None:intergenic
AACAACAATGACTAGCAATA+AGG 0.315318 1_1:-21021791 None:intergenic
ATGATATTTGGCTAGTGAAT+TGG 0.327057 1_1:-21017815 Msa0013570:CDS
ATAAATATGTGAAGACTTCA+TGG 0.340994 1_1:+21020427 None:intergenic
AAACTCATTTGGAAGTTTAA+GGG 0.350384 1_1:+21017869 None:intergenic
TACACAACAAGTTGAAAATT+GGG 0.354673 1_1:-21020155 Msa0013570:CDS
TGTGGTTGAGGACACATAAT+TGG 0.354680 1_1:+21020773 None:intergenic
TGACATTCTTCTTCAACTCT+TGG 0.360124 1_1:-21020244 Msa0013570:CDS
GAAACTATTATGACAAATAA+AGG 0.361575 1_1:-21019905 Msa0013570:intron
TTACTTTCAAAGTAAGGTAT+TGG 0.362100 1_1:+21020103 None:intergenic
AGATGGTGATGTTAAAGTTT+GGG 0.372056 1_1:-21019411 Msa0013570:CDS
TGGTCCTTAGTGAAACCTTT+TGG 0.375145 1_1:+21021136 None:intergenic
CTCAATTTCTTATGTGGTTG+AGG 0.376046 1_1:+21020761 None:intergenic
TGTTATTCCAACATGAAATC+AGG 0.384360 1_1:-21019361 Msa0013570:CDS
TATCTTTCTACAAAATTCCT+TGG 0.385312 1_1:+21017918 None:intergenic
TTCCTTCATTACAAATTACT+TGG 0.385639 1_1:-21019446 Msa0013570:CDS
ACTCTTGGATGGGAGAGTTT+GGG 0.388176 1_1:-21020229 Msa0013570:CDS
ATCCAAGTAATTTGTAATGA+AGG 0.391002 1_1:+21019444 None:intergenic
CCACATTCCCCTCCCCTTCA+AGG 0.392505 1_1:-21020057 Msa0013570:intron
GATTTGACATGTCATTCATA+TGG 0.392626 1_1:+21021116 None:intergenic
ATATTATTACTTTCAAAGTA+AGG 0.401134 1_1:+21020097 None:intergenic
TTCAATCTCAAGGGTACTCT+TGG 0.401861 1_1:+21020916 None:intergenic
TATTTAACTGCTCCTGCTCT+TGG 0.409863 1_1:+21020492 None:intergenic
GCTTCCAACCTCTACAAAAC+TGG 0.416735 1_1:+21019338 None:intergenic
TCACTTCTCAATTTCTTATG+TGG 0.420211 1_1:+21020755 None:intergenic
TCAAAGAGACAAAGACTTCT+CGG 0.423887 1_1:-21019939 Msa0013570:CDS
ACAACAATGACTAGCAATAA+GGG 0.438593 1_1:-21021790 None:intergenic
ATTCTTCTTCAACTCTTGGA+TGG 0.449374 1_1:-21020240 Msa0013570:CDS
AACAAGTTGGATTACCTTGA+AGG 0.449668 1_1:+21020043 None:intergenic
TGAGTGCGACTAAAATCAAT+GGG 0.458480 1_1:-21021054 Msa0013570:CDS
CAAGAATTATACCACTAGAT+TGG 0.461063 1_1:+21020675 None:intergenic
ACACATTATTCACTAGATCA+TGG 0.461106 1_1:-21020995 Msa0013570:CDS
TGGAGTTGAATTTATCAGCT+TGG 0.461811 1_1:+21019656 None:intergenic
TCAACGAGGGCATTCTAGAT+TGG 0.465952 1_1:-21019599 Msa0013570:intron
ACATATTTATAGCACTTCCT+TGG 0.465958 1_1:-21020414 Msa0013570:intron
TTCTTCTTCAACTCTTGGAT+GGG 0.471949 1_1:-21020239 Msa0013570:CDS
TTGTCAATGTTTGTCCATTG+AGG 0.488966 1_1:+21017579 None:intergenic
CTGGAAGAATTAAAGGTGGA+TGG 0.489864 1_1:-21020191 Msa0013570:CDS
AGTCGTCATCACTACTTTGT+TGG 0.491123 1_1:+21020852 None:intergenic
TGGGAAGAAAATAAATTGAA+AGG 0.492702 1_1:-21019310 Msa0013570:CDS
CTAGTCTTCTTCTTGCATGA+AGG 0.492721 1_1:+21020806 None:intergenic
ACCACACCAATTCTTCAAGA+TGG 0.495178 1_1:-21021721 Msa0013570:CDS
ATGAGTGCGACTAAAATCAA+TGG 0.496366 1_1:-21021055 Msa0013570:CDS
AGTAATAATATTTAGACTTG+AGG 0.498996 1_1:-21020085 Msa0013570:CDS
TAAAGTTTGGGAAGAAATTG+TGG 0.501503 1_1:-21019399 Msa0013570:CDS
CCTTGAAGGGGAGGGGAATG+TGG 0.501998 1_1:+21020057 None:intergenic
ACAAGTTGGATTACCTTGAA+GGG 0.512204 1_1:+21020044 None:intergenic
TGAAAGGATATTCAATCTCA+AGG 0.515164 1_1:+21020906 None:intergenic
TTGGATTACCTTGAAGGGGA+GGG 0.522489 1_1:+21020049 None:intergenic
CTAGATTGGACATGATGCTT+AGG 0.523842 1_1:+21020689 None:intergenic
TCTGGAGTCTTGAGAAACAT+TGG 0.528591 1_1:+21021094 None:intergenic
CACATTATTCACTAGATCAT+GGG 0.539236 1_1:-21020994 Msa0013570:CDS
GTGATATTACTACACCTCAA+TGG 0.541396 1_1:-21017593 Msa0013570:CDS
TTCATGGTAATCCTGAAAGA+AGG 0.545664 1_1:+21020443 None:intergenic
TGGATTACCTTGAAGGGGAG+GGG 0.550048 1_1:+21020050 None:intergenic
TCAAATGAAGTAGATGAACT+TGG 0.557460 1_1:+21017515 None:intergenic
TGTGTTTGCAGATGATTCCA+AGG 0.559130 1_1:-21017935 Msa0013570:intron
TCGCGTTATGACAGGAGAGA+AGG 0.560064 1_1:-21019737 Msa0013570:intron
GCGTTGTAGATGATACCAAA+AGG 0.565115 1_1:-21021151 Msa0013570:intron
TCATGTTGATTGTCATTGAA+AGG 0.565866 1_1:+21020890 None:intergenic
CTTGGATAACAAGGAACAGA+TGG 0.569177 1_1:-21019428 Msa0013570:CDS
ACGAATAGTAGAAGCAGAGA+GGG 0.570331 1_1:+21021759 None:intergenic
AAACTGGCCTGATTTCATGT+TGG 0.576131 1_1:+21019354 None:intergenic
TACAAATTACTTGGATAACA+AGG 0.576875 1_1:-21019437 Msa0013570:CDS
TGATTGTTAGCAAATTGTGA+TGG 0.578116 1_1:+21020285 None:intergenic
GAAGAAAATAAATTGAAAGG+TGG 0.594266 1_1:-21019307 Msa0013570:CDS
GATTGTTAGCAAATTGTGAT+GGG 0.597689 1_1:+21020286 None:intergenic
GAAAGGATATTCAATCTCAA+GGG 0.599161 1_1:+21020907 None:intergenic
TTTGCACGATCGCTTAGATG+TGG 0.600459 1_1:-21017786 Msa0013570:CDS
GATACCAAAAGGTTTCACTA+AGG 0.601016 1_1:-21021140 Msa0013570:CDS
ATGTTTCTCAAGACTCCAGA+TGG 0.601949 1_1:-21021091 Msa0013570:CDS
AGTGACTCAAGTGAAGGTGT+TGG 0.603054 1_1:-21020737 Msa0013570:CDS
TCCATCTTGAAGAATTGGTG+TGG 0.604101 1_1:+21021720 None:intergenic
TTGAGAAGTGACTCAAGTGA+AGG 0.604348 1_1:-21020743 Msa0013570:CDS
CAAGTTGGATTACCTTGAAG+GGG 0.606972 1_1:+21020045 None:intergenic
TGTCTTTGAGCTTATCAAGA+GGG 0.608394 1_1:-21019275 Msa0013570:CDS
GTTGGATTACCTTGAAGGGG+AGG 0.616096 1_1:+21020048 None:intergenic
TTCACTAGATCATGGGCACA+TGG 0.616979 1_1:-21020987 Msa0013570:CDS
ACACAACAAGTTGAAAATTG+GGG 0.637450 1_1:-21020154 Msa0013570:CDS
AAGCATCATGTCCAATCTAG+TGG 0.644078 1_1:-21020686 Msa0013570:intron
AACGAATAGTAGAAGCAGAG+AGG 0.651419 1_1:+21021758 None:intergenic
GTGTCTTTGAGCTTATCAAG+AGG 0.662665 1_1:-21019276 Msa0013570:CDS
AATATTATGCCAAATCAACG+AGG 0.719522 1_1:-21019613 Msa0013570:CDS
ATATTATGCCAAATCAACGA+GGG 0.724045 1_1:-21019612 Msa0013570:CDS
GAGTGCGACTAAAATCAATG+GGG 0.768451 1_1:-21021053 Msa0013570:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAAAAACAAAATATGAA+GGG + chr1_1:21017631-21017650 None:intergenic 10.0%
!! AATTAAAAAACAAAATATGA+AGG + chr1_1:21017632-21017651 None:intergenic 10.0%
!! TTCTTTCAAAAAAAAAATTA+TGG + chr1_1:21020175-21020194 None:intergenic 10.0%
!! TTATTTGATAAAATTTATGT+GGG + chr1_1:21020461-21020480 None:intergenic 10.0%
!! TTTATTTGATAAAATTTATG+TGG + chr1_1:21020462-21020481 None:intergenic 10.0%
!!! TTTTTTAAGTGTAAAAAATT+TGG + chr1_1:21021265-21021284 None:intergenic 10.0%
!!! TTATCTTTTAATTTATCCAA+TGG - chr1_1:21018661-21018680 Msa0013570:intron 15.0%
!! ATATTATTACTTTCAAAGTA+AGG + chr1_1:21019205-21019224 None:intergenic 15.0%
!!! ATTATTTTGAAGATAAAACA+AGG + chr1_1:21019309-21019328 None:intergenic 15.0%
!!! TTGTTTTATCTTCAAAATAA+TGG - chr1_1:21019308-21019327 Msa0013570:CDS 15.0%
!!! TTTTCTTTCAAATTGTAAAA+TGG + chr1_1:21020307-21020326 None:intergenic 15.0%
!!! ACTTTTTGTTTATACATATA+AGG - chr1_1:21020710-21020729 Msa0013570:CDS 15.0%
!!! CTTTTTGTTTATACATATAA+GGG - chr1_1:21020711-21020730 Msa0013570:CDS 15.0%
!! TAGTAAAGAAATAAATGAAA+TGG + chr1_1:21021081-21021100 None:intergenic 15.0%
!! TTCAACAATAAAAAAAAACA+AGG + chr1_1:21021203-21021222 None:intergenic 15.0%
!!! CTTTTAGTTTTTCAATATAA+AGG - chr1_1:21021540-21021559 Msa0013570:intron 15.0%
!! TAGAAAAATAATACGCTAAA+AGG + chr1_1:21017739-21017758 None:intergenic 20.0%
!!! TATCTACAAGTTTTAACTTA+GGG - chr1_1:21017757-21017776 Msa0013570:CDS 20.0%
!! TGACTTATCAAAAATTTCAA+TGG + chr1_1:21018473-21018492 None:intergenic 20.0%
!!! AAAGTTCAATGCATATATTT+TGG + chr1_1:21018959-21018978 None:intergenic 20.0%
!!! TATTTTTCTGGAAGAATTAA+AGG - chr1_1:21019101-21019120 Msa0013570:intron 20.0%
!! AGTAATAATATTTAGACTTG+AGG - chr1_1:21019214-21019233 Msa0013570:intron 20.0%
!!! AAGATAAAACAAGGTATTAA+AGG + chr1_1:21019300-21019319 None:intergenic 20.0%
!! GAAACTATTATGACAAATAA+AGG - chr1_1:21019394-21019413 Msa0013570:CDS 20.0%
!! ATAATATTGACCTTGAAAAA+TGG + chr1_1:21019674-21019693 None:intergenic 20.0%
!!! TAATTTGTAATGAAGGAATT+TGG + chr1_1:21019851-21019870 None:intergenic 20.0%
!!! TATAACACTTGCTTTTTTAT+TGG - chr1_1:21020380-21020399 Msa0013570:intron 20.0%
!! TGGTATATGGATATAAATAA+TGG + chr1_1:21020766-21020785 None:intergenic 20.0%
!!! TTAGTTTTTCAATATAAAGG+AGG - chr1_1:21021543-21021562 Msa0013570:intron 20.0%
!!! TAGTTTTTCAATATAAAGGA+GGG - chr1_1:21021544-21021563 Msa0013570:intron 20.0%
!! TGTATTAGATGATAGTAAAT+TGG - chr1_1:21021584-21021603 Msa0013570:intron 20.0%
!!! TTTAATTTGTTCTGCACATT+TGG - chr1_1:21017645-21017664 Msa0013570:CDS 25.0%
!! TTTGAATTTTCACTTCATGA+TGG - chr1_1:21017676-21017695 Msa0013570:CDS 25.0%
!!! CTATCTACAAGTTTTAACTT+AGG - chr1_1:21017756-21017775 Msa0013570:CDS 25.0%
! ATAGACAAAAATTAACCCTT+CGG - chr1_1:21017790-21017809 Msa0013570:CDS 25.0%
!! TATATTTTCAACCCTAAAGA+TGG - chr1_1:21017827-21017846 Msa0013570:CDS 25.0%
!! ATATTTTCAACCCTAAAGAT+GGG - chr1_1:21017828-21017847 Msa0013570:CDS 25.0%
! TTTATTTGTAGATGACGAAA+CGG + chr1_1:21017863-21017882 None:intergenic 25.0%
! CATTTGAACAATTTCTCTTA+TGG - chr1_1:21017887-21017906 Msa0013570:CDS 25.0%
!! GTCATGTTAACAAATGTTTT+TGG - chr1_1:21017909-21017928 Msa0013570:CDS 25.0%
!!! ATGTTAACAAATGTTTTTGG+AGG - chr1_1:21017912-21017931 Msa0013570:CDS 25.0%
! TTTATATGCATGCTAACATA+AGG - chr1_1:21018117-21018136 Msa0013570:intron 25.0%
! AATCAAATAATCCTTCTTTC+AGG - chr1_1:21018845-21018864 Msa0013570:intron 25.0%
! ATAAATATGTGAAGACTTCA+TGG + chr1_1:21018875-21018894 None:intergenic 25.0%
!! TACACAACAAGTTGAAAATT+GGG - chr1_1:21019144-21019163 Msa0013570:intron 25.0%
! TTACTTTCAAAGTAAGGTAT+TGG + chr1_1:21019199-21019218 None:intergenic 25.0%
! CTTCAAAAGAAAAAACAAGT+TGG + chr1_1:21019272-21019291 None:intergenic 25.0%
!! TGCATCAAGTAACATTTTAA+CGG + chr1_1:21019821-21019840 None:intergenic 25.0%
! TTCCTTCATTACAAATTACT+TGG - chr1_1:21019853-21019872 Msa0013570:intron 25.0%
!! ATCCAAGTAATTTGTAATGA+AGG + chr1_1:21019858-21019877 None:intergenic 25.0%
! TACAAATTACTTGGATAACA+AGG - chr1_1:21019862-21019881 Msa0013570:intron 25.0%
! TGGGAAGAAAATAAATTGAA+AGG - chr1_1:21019989-21020008 Msa0013570:intron 25.0%
! GAAGAAAATAAATTGAAAGG+TGG - chr1_1:21019992-21020011 Msa0013570:intron 25.0%
!! CTTAATGTTCATATTTTCAG+AGG - chr1_1:21020058-21020077 Msa0013570:CDS 25.0%
!!! GTCATTTTCACATATAAGAT+CGG - chr1_1:21020553-21020572 Msa0013570:CDS 25.0%
!! TCATTTTCACATATAAGATC+GGG - chr1_1:21020554-21020573 Msa0013570:CDS 25.0%
! CTAACTCAATGTTACAAAAT+CGG + chr1_1:21020834-21020853 None:intergenic 25.0%
! AAAAATCAAACCATGAATGA+AGG + chr1_1:21021120-21021139 None:intergenic 25.0%
! TATCTTTCTACAAAATTCCT+TGG + chr1_1:21021384-21021403 None:intergenic 25.0%
!! GGAATTTTGTAGAAAGATAT+TGG - chr1_1:21021385-21021404 Msa0013570:intron 25.0%
! AAACTCATTTGGAAGTTTAA+GGG + chr1_1:21021433-21021452 None:intergenic 25.0%
! TAAACTCATTTGGAAGTTTA+AGG + chr1_1:21021434-21021453 None:intergenic 25.0%
!! ATTTTGCACTTAAACTCATT+TGG + chr1_1:21021444-21021463 None:intergenic 25.0%
!! AGTTTAAGTGCAAAATGTTT+TGG - chr1_1:21021448-21021467 Msa0013570:intron 25.0%
!! GTTTAAGTGCAAAATGTTTT+GGG - chr1_1:21021449-21021468 Msa0013570:intron 25.0%
AAAAATTAACCCTTCGGAAA+TGG - chr1_1:21017796-21017815 Msa0013570:CDS 30.0%
AAAATTAACCCTTCGGAAAT+GGG - chr1_1:21017797-21017816 Msa0013570:CDS 30.0%
TTATTTGTAGATGACGAAAC+GGG + chr1_1:21017862-21017881 None:intergenic 30.0%
!! TGCACGTTGAACATTTTAAT+AGG - chr1_1:21018039-21018058 Msa0013570:intron 30.0%
GATTTGACATGTCATTCATA+TGG + chr1_1:21018186-21018205 None:intergenic 30.0%
! CTAAAATCAATGGGGATTTT+TGG - chr1_1:21018254-21018273 Msa0013570:intron 30.0%
!!! ATTTTTGGTTTCAAAAGGGT+TGG - chr1_1:21018269-21018288 Msa0013570:intron 30.0%
ACACATTATTCACTAGATCA+TGG - chr1_1:21018304-21018323 Msa0013570:intron 30.0%
CACATTATTCACTAGATCAT+GGG - chr1_1:21018305-21018324 Msa0013570:intron 30.0%
! TGAAGAAAACTCTCATTTTG+TGG - chr1_1:21018348-21018367 Msa0013570:intron 30.0%
GAAAGGATATTCAATCTCAA+GGG + chr1_1:21018395-21018414 None:intergenic 30.0%
TGAAAGGATATTCAATCTCA+AGG + chr1_1:21018396-21018415 None:intergenic 30.0%
! TCATGTTGATTGTCATTGAA+AGG + chr1_1:21018412-21018431 None:intergenic 30.0%
TCACTTCTCAATTTCTTATG+TGG + chr1_1:21018547-21018566 None:intergenic 30.0%
CAAGAATTATACCACTAGAT+TGG + chr1_1:21018627-21018646 None:intergenic 30.0%
TTCGACTTCAAAATTTCCAT+TGG + chr1_1:21018680-21018699 None:intergenic 30.0%
! TATGTTGTTCATTTTCCTAG+AGG - chr1_1:21018714-21018733 Msa0013570:intron 30.0%
ACATATTTATAGCACTTCCT+TGG - chr1_1:21018885-21018904 Msa0013570:intron 30.0%
AATTAATCAAAGACTCACCA+AGG + chr1_1:21018905-21018924 None:intergenic 30.0%
GATTGTTAGCAAATTGTGAT+GGG + chr1_1:21019016-21019035 None:intergenic 30.0%
TGATTGTTAGCAAATTGTGA+TGG + chr1_1:21019017-21019036 None:intergenic 30.0%
! TGGGATGCTAAATATTTTTC+TGG - chr1_1:21019089-21019108 Msa0013570:intron 30.0%
!! TTTTCTGGAAGAATTAAAGG+TGG - chr1_1:21019104-21019123 Msa0013570:intron 30.0%
! GTACACAACAAGTTGAAAAT+TGG - chr1_1:21019143-21019162 Msa0013570:intron 30.0%
! ACACAACAAGTTGAAAATTG+GGG - chr1_1:21019145-21019164 Msa0013570:intron 30.0%
ATAGTAACTCTTTGAGTAGT+TGG - chr1_1:21019462-21019481 Msa0013570:intron 30.0%
TAGTAACTCTTTGAGTAGTT+GGG - chr1_1:21019463-21019482 Msa0013570:intron 30.0%
! GATTCCTCAAAATTTGTTTG+CGG + chr1_1:21019517-21019536 None:intergenic 30.0%
!! CTCCAAATATCCATTTTTCA+AGG - chr1_1:21019661-21019680 Msa0013570:CDS 30.0%
GACCTTGAAAAATGGATATT+TGG + chr1_1:21019666-21019685 None:intergenic 30.0%
AATATTATGCCAAATCAACG+AGG - chr1_1:21019686-21019705 Msa0013570:CDS 30.0%
ATATTATGCCAAATCAACGA+GGG - chr1_1:21019687-21019706 Msa0013570:CDS 30.0%
! AGATGGTGATGTTAAAGTTT+GGG - chr1_1:21019888-21019907 Msa0013570:intron 30.0%
TAAAGTTTGGGAAGAAATTG+TGG - chr1_1:21019900-21019919 Msa0013570:intron 30.0%
GAATAACAATGCAACTTTAC+AGG + chr1_1:21019926-21019945 None:intergenic 30.0%
TGTTATTCCAACATGAAATC+AGG - chr1_1:21019938-21019957 Msa0013570:CDS 30.0%
GTAGTACAGCACAATTATTA+TGG + chr1_1:21020109-21020128 None:intergenic 30.0%
! AAGTGTTATAGAGTGTCAAA+AGG + chr1_1:21020370-21020389 None:intergenic 30.0%
TTTATTGGATGAAACTCATG+TGG - chr1_1:21020395-21020414 Msa0013570:intron 30.0%
! TTTGAGTTAAGAGAAATGCT+AGG + chr1_1:21020523-21020542 None:intergenic 30.0%
TGTTGAAAAGACATAATGCT+TGG + chr1_1:21020888-21020907 None:intergenic 30.0%
!! GATGCTTTAGAAAAGGTTAA+TGG + chr1_1:21021047-21021066 None:intergenic 30.0%
! ACACATTTTTCCTTCATTCA+TGG - chr1_1:21021107-21021126 Msa0013570:CDS 30.0%
ATTACTAGTTCGATCTAAGT+TGG - chr1_1:21021321-21021340 Msa0013570:intron 30.0%
TTTGGAAGTTTAAGGGATAT+TGG + chr1_1:21021426-21021445 None:intergenic 30.0%
TACAACGTGGTTATGATATT+TGG - chr1_1:21021472-21021491 Msa0013570:intron 30.0%
ATGATATTTGGCTAGTGAAT+TGG - chr1_1:21021484-21021503 Msa0013570:intron 30.0%
TCAAATGAAGTAGATGAACT+TGG + chr1_1:21021787-21021806 None:intergenic 30.0%
AGCTTTCCATCTTGAAGAAT+TGG + chr1_1:21017587-21017606 None:intergenic 35.0%
AATCTATTCCCATTTCCGAA+GGG + chr1_1:21017808-21017827 None:intergenic 35.0%
TAATCTATTCCCATTTCCGA+AGG + chr1_1:21017809-21017828 None:intergenic 35.0%
GATACCAAAAGGTTTCACTA+AGG - chr1_1:21018159-21018178 Msa0013570:intron 35.0%
! ATTTCCCAATTTTTGCCATC+TGG + chr1_1:21018226-21018245 None:intergenic 35.0%
ATGAGTGCGACTAAAATCAA+TGG - chr1_1:21018244-21018263 Msa0013570:intron 35.0%
TGAGTGCGACTAAAATCAAT+GGG - chr1_1:21018245-21018264 Msa0013570:intron 35.0%
!!! TGGGGATTTTTGGTTTCAAA+AGG - chr1_1:21018264-21018283 Msa0013570:intron 35.0%
!!! GGGGATTTTTGGTTTCAAAA+GGG - chr1_1:21018265-21018284 Msa0013570:intron 35.0%
!! GGACACATAATTGGTGATTT+TGG + chr1_1:21018520-21018539 None:intergenic 35.0%
CTCAATTTCTTATGTGGTTG+AGG + chr1_1:21018541-21018560 None:intergenic 35.0%
! GTTCATTTTCCTAGAGGATA+CGG - chr1_1:21018720-21018739 Msa0013570:intron 35.0%
! TTCATTTTCCTAGAGGATAC+GGG - chr1_1:21018721-21018740 Msa0013570:intron 35.0%
TTCATGGTAATCCTGAAAGA+AGG + chr1_1:21018859-21018878 None:intergenic 35.0%
TGACATTCTTCTTCAACTCT+TGG - chr1_1:21019055-21019074 Msa0013570:intron 35.0%
ATTCTTCTTCAACTCTTGGA+TGG - chr1_1:21019059-21019078 Msa0013570:intron 35.0%
TTCTTCTTCAACTCTTGGAT+GGG - chr1_1:21019060-21019079 Msa0013570:intron 35.0%
! ACAAGTTGGATTACCTTGAA+GGG + chr1_1:21019258-21019277 None:intergenic 35.0%
! AACAAGTTGGATTACCTTGA+AGG + chr1_1:21019259-21019278 None:intergenic 35.0%
TCAAAGAGACAAAGACTTCT+CGG - chr1_1:21019360-21019379 Msa0013570:CDS 35.0%
CAACCGAAAAAACTTCATTG+CGG - chr1_1:21019585-21019604 Msa0013570:intron 35.0%
!!! TGTCCGCAATGAAGTTTTTT+CGG + chr1_1:21019591-21019610 None:intergenic 35.0%
AAAAACTTCATTGCGGACAA+AGG - chr1_1:21019592-21019611 Msa0013570:intron 35.0%
TGGAGTTGAATTTATCAGCT+TGG + chr1_1:21019646-21019665 None:intergenic 35.0%
! GAAAGTATAACAGCACTTTC+TGG + chr1_1:21019786-21019805 None:intergenic 35.0%
! CAGATGGTGATGTTAAAGTT+TGG - chr1_1:21019887-21019906 Msa0013570:intron 35.0%
!! TAGAGGTTGGAAGCTATTTT+GGG - chr1_1:21019970-21019989 Msa0013570:intron 35.0%
TGTCTTTGAGCTTATCAAGA+GGG - chr1_1:21020024-21020043 Msa0013570:intron 35.0%
GCAATTGAGATTTCAAGCTA+TGG - chr1_1:21020080-21020099 Msa0013570:CDS 35.0%
GGGGGGAAATTTACTTTAAA+AGG - chr1_1:21020273-21020292 Msa0013570:CDS 35.0%
! GTGGTTTCACACTTTAGAAA+TGG - chr1_1:21020414-21020433 Msa0013570:intron 35.0%
AAACACAATTTCACACCGTA+CGG + chr1_1:21020623-21020642 None:intergenic 35.0%
GTTATGTGTGACTTCTTGTA+AGG - chr1_1:21020643-21020662 Msa0013570:intron 35.0%
TGTTAAACTCGTGTTGAACA+TGG + chr1_1:21020786-21020805 None:intergenic 35.0%
! ATGTCTTTTCAACAACACAC+CGG - chr1_1:21020894-21020913 Msa0013570:CDS 35.0%
ACTCACGAAGTTCAATAGTT+AGG + chr1_1:21020965-21020984 None:intergenic 35.0%
AAATGAAATGGTACTCGTTG+AGG + chr1_1:21021069-21021088 None:intergenic 35.0%
CAGATTGAAGCAAATTGAGT+TGG + chr1_1:21021168-21021187 None:intergenic 35.0%
! CAACTCAATTTGCTTCAATC+TGG - chr1_1:21021166-21021185 Msa0013570:intron 35.0%
!! AAAATGTTTTGGGTACAACG+TGG - chr1_1:21021459-21021478 Msa0013570:intron 35.0%
GTGATATTACTACACCTCAA+TGG - chr1_1:21021706-21021725 Msa0013570:intron 35.0%
TTGTCAATGTTTGTCCATTG+AGG + chr1_1:21021723-21021742 None:intergenic 35.0%
ACGAATAGTAGAAGCAGAGA+GGG + chr1_1:21017543-21017562 None:intergenic 40.0%
AACGAATAGTAGAAGCAGAG+AGG + chr1_1:21017544-21017563 None:intergenic 40.0%
ACCACACCAATTCTTCAAGA+TGG - chr1_1:21017578-21017597 Msa0013570:CDS 40.0%
TCCATCTTGAAGAATTGGTG+TGG + chr1_1:21017582-21017601 None:intergenic 40.0%
GGTTATTCGACCCATCTTTA+GGG + chr1_1:21017841-21017860 None:intergenic 40.0%
TTGGTATCATCTACAACGCA+TGG + chr1_1:21018147-21018166 None:intergenic 40.0%
GCGTTGTAGATGATACCAAA+AGG - chr1_1:21018148-21018167 Msa0013570:intron 40.0%
! TGGTCCTTAGTGAAACCTTT+TGG + chr1_1:21018166-21018185 None:intergenic 40.0%
! TCTGGAGTCTTGAGAAACAT+TGG + chr1_1:21018208-21018227 None:intergenic 40.0%
ATGTTTCTCAAGACTCCAGA+TGG - chr1_1:21018208-21018227 Msa0013570:intron 40.0%
AGACTCCAGATGGCAAAAAT+TGG - chr1_1:21018218-21018237 Msa0013570:intron 40.0%
GACTCCAGATGGCAAAAATT+GGG - chr1_1:21018219-21018238 Msa0013570:intron 40.0%
GAGTGCGACTAAAATCAATG+GGG - chr1_1:21018246-21018265 Msa0013570:intron 40.0%
!! TTCAATCTCAAGGGTACTCT+TGG + chr1_1:21018386-21018405 None:intergenic 40.0%
AGTCGTCATCACTACTTTGT+TGG + chr1_1:21018450-21018469 None:intergenic 40.0%
! CTAGTCTTCTTCTTGCATGA+AGG + chr1_1:21018496-21018515 None:intergenic 40.0%
TGTGGTTGAGGACACATAAT+TGG + chr1_1:21018529-21018548 None:intergenic 40.0%
TTGAGAAGTGACTCAAGTGA+AGG - chr1_1:21018556-21018575 Msa0013570:intron 40.0%
! CATGATGCTTAGGCAAGTTT+TGG + chr1_1:21018603-21018622 None:intergenic 40.0%
CTAGATTGGACATGATGCTT+AGG + chr1_1:21018613-21018632 None:intergenic 40.0%
AAGCATCATGTCCAATCTAG+TGG - chr1_1:21018613-21018632 Msa0013570:intron 40.0%
!! CTAGCTCGTGCTTTACTTTT+CGG + chr1_1:21018762-21018781 None:intergenic 40.0%
CAAAAAGCAATACCAAGAGC+AGG - chr1_1:21018795-21018814 Msa0013570:intron 40.0%
TATTTAACTGCTCCTGCTCT+TGG + chr1_1:21018810-21018829 None:intergenic 40.0%
CTGGAAGAATTAAAGGTGGA+TGG - chr1_1:21019108-21019127 Msa0013570:intron 40.0%
! CAAGTTGGATTACCTTGAAG+GGG + chr1_1:21019257-21019276 None:intergenic 40.0%
GCATCAATGTTCTGCACATA+TGG - chr1_1:21019426-21019445 Msa0013570:CDS 40.0%
! TTGGGACTGATTTCTATACG+AGG - chr1_1:21019481-21019500 Msa0013570:intron 40.0%
! TGGGACTGATTTCTATACGA+GGG - chr1_1:21019482-21019501 Msa0013570:intron 40.0%
TTTCTATACGAGGGAGAATC+AGG - chr1_1:21019491-21019510 Msa0013570:intron 40.0%
!! TGTTTTTGTCGCGTTATGAC+AGG - chr1_1:21019554-21019573 Msa0013570:intron 40.0%
CTTGGATAACAAGGAACAGA+TGG - chr1_1:21019871-21019890 Msa0013570:intron 40.0%
! AAACTGGCCTGATTTCATGT+TGG + chr1_1:21019948-21019967 None:intergenic 40.0%
!! AAATCAGGCCAGTTTTGTAG+AGG - chr1_1:21019953-21019972 Msa0013570:intron 40.0%
! GTAGAGGTTGGAAGCTATTT+TGG - chr1_1:21019969-21019988 Msa0013570:intron 40.0%
GTGTCTTTGAGCTTATCAAG+AGG - chr1_1:21020023-21020042 Msa0013570:intron 40.0%
TTTCACAACAAGCAGCACAT+GGG - chr1_1:21020237-21020256 Msa0013570:CDS 40.0%
AATCCATGTTCTCATCCGTA+CGG - chr1_1:21020605-21020624 Msa0013570:intron 40.0%
CTCGTGTTGAACATGGTATA+TGG + chr1_1:21020779-21020798 None:intergenic 40.0%
!! CGTTGAGGATGCTTTAGAAA+AGG + chr1_1:21021054-21021073 None:intergenic 40.0%
! CTCAATTTGCTTCAATCTGG+TGG - chr1_1:21021169-21021188 Msa0013570:intron 40.0%
TGTGTTTGCAGATGATTCCA+AGG - chr1_1:21021364-21021383 Msa0013570:intron 40.0%
!!! CTTGGCTGTGATTTTTTGCT+GGG + chr1_1:21021769-21021788 None:intergenic 40.0%
!!! ACTTGGCTGTGATTTTTTGC+TGG + chr1_1:21021770-21021789 None:intergenic 40.0%
GGGTTATTCGACCCATCTTT+AGG + chr1_1:21017842-21017861 None:intergenic 45.0%
TTCACTAGATCATGGGCACA+TGG - chr1_1:21018312-21018331 Msa0013570:intron 45.0%
! AGTGACTCAAGTGAAGGTGT+TGG - chr1_1:21018562-21018581 Msa0013570:intron 45.0%
AACTCTTGGATGGGAGAGTT+TGG - chr1_1:21019069-21019088 Msa0013570:intron 45.0%
ACTCTTGGATGGGAGAGTTT+GGG - chr1_1:21019070-21019089 Msa0013570:intron 45.0%
TTGGATTACCTTGAAGGGGA+GGG + chr1_1:21019253-21019272 None:intergenic 45.0%
! CAGGCCGCAAACAAATTTTG+AGG - chr1_1:21019510-21019529 Msa0013570:intron 45.0%
! CTAGAATGCCCTCGTTGATT+TGG + chr1_1:21019698-21019717 None:intergenic 45.0%
!! TCAACGAGGGCATTCTAGAT+TGG - chr1_1:21019700-21019719 Msa0013570:CDS 45.0%
GCTTCCAACCTCTACAAAAC+TGG + chr1_1:21019964-21019983 None:intergenic 45.0%
CTTTCACAACAAGCAGCACA+TGG - chr1_1:21020236-21020255 Msa0013570:CDS 45.0%
GAAATGGATCCCACGTAAAG+TGG - chr1_1:21020430-21020449 Msa0013570:CDS 45.0%
TTCCCTTAGCATCACTTCCA+CGG + chr1_1:21020932-21020951 None:intergenic 45.0%
TTTGCACGATCGCTTAGATG+TGG - chr1_1:21021513-21021532 Msa0013570:intron 45.0%
!! AAAAATATCAAATTTAATTA+TGG + chr1_1:21020206-21020225 None:intergenic 5.0%
TGGATTACCTTGAAGGGGAG+GGG + chr1_1:21019252-21019271 None:intergenic 50.0%
GTTGGATTACCTTGAAGGGG+AGG + chr1_1:21019254-21019273 None:intergenic 50.0%
TCGCGTTATGACAGGAGAGA+AGG - chr1_1:21019562-21019581 Msa0013570:intron 50.0%
!! CAGGCCAGTTTTGTAGAGGT+TGG - chr1_1:21019957-21019976 Msa0013570:intron 50.0%
TGGGTCTCACCACTTTACGT+GGG + chr1_1:21020442-21020461 None:intergenic 50.0%
ACACCGTACGGATGAGAACA+TGG + chr1_1:21020611-21020630 None:intergenic 50.0%
ACATGGGCGCATGTGAGAGA+GGG - chr1_1:21020253-21020272 Msa0013570:CDS 55.0%
GTGGGTCTCACCACTTTACG+TGG + chr1_1:21020443-21020462 None:intergenic 55.0%
CAACACACCGGCGTTCACTA+TGG - chr1_1:21020906-21020925 Msa0013570:CDS 55.0%
TGGCCGTGGAAGTGATGCTA+AGG - chr1_1:21020926-21020945 Msa0013570:CDS 55.0%
GGCCGTGGAAGTGATGCTAA+GGG - chr1_1:21020927-21020946 Msa0013570:CDS 55.0%
CGCTAGCACCCGTATCCTCT+AGG + chr1_1:21018732-21018751 None:intergenic 60.0%
CCTTGAAGGGGAGGGGAATG+TGG + chr1_1:21019245-21019264 None:intergenic 60.0%
CCACATTCCCCTCCCCTTCA+AGG - chr1_1:21019242-21019261 Msa0013570:intron 60.0%
CACATGGGCGCATGTGAGAG+AGG - chr1_1:21020252-21020271 Msa0013570:CDS 60.0%
CATGGGCGCATGTGAGAGAG+GGG - chr1_1:21020254-21020273 Msa0013570:CDS 60.0%
ATGGGCGCATGTGAGAGAGG+GGG - chr1_1:21020255-21020274 Msa0013570:CDS 60.0%
TCCACGGCCATAGTGAACGC+CGG + chr1_1:21020916-21020935 None:intergenic 60.0%
TGGGCGCATGTGAGAGAGGG+GGG - chr1_1:21020256-21020275 Msa0013570:CDS 65.0%
ACCGGCGTTCACTATGGCCG+TGG - chr1_1:21020912-21020931 Msa0013570:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 21017515 21021806 21017515 ID=Msa0013570;Name=Msa0013570
chr1_1 mRNA 21017515 21021806 21017515 ID=Msa0013570-mRNA-1;Parent=Msa0013570;Name=Msa0013570-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0|0|0|0.87|1|1|8|0|620
chr1_1 exon 21021714 21021806 21021714 ID=Msa0013570-mRNA-1:exon:7501;Parent=Msa0013570-mRNA-1
chr1_1 exon 21020687 21021164 21020687 ID=Msa0013570-mRNA-1:exon:7500;Parent=Msa0013570-mRNA-1
chr1_1 exon 21020415 21020587 21020415 ID=Msa0013570-mRNA-1:exon:7499;Parent=Msa0013570-mRNA-1
chr1_1 exon 21020058 21020313 21020058 ID=Msa0013570-mRNA-1:exon:7498;Parent=Msa0013570-mRNA-1
chr1_1 exon 21019906 21019968 21019906 ID=Msa0013570-mRNA-1:exon:7497;Parent=Msa0013570-mRNA-1
chr1_1 exon 21019600 21019745 21019600 ID=Msa0013570-mRNA-1:exon:7496;Parent=Msa0013570-mRNA-1
chr1_1 exon 21019258 21019479 21019258 ID=Msa0013570-mRNA-1:exon:7495;Parent=Msa0013570-mRNA-1
chr1_1 exon 21017515 21017946 21017515 ID=Msa0013570-mRNA-1:exon:7494;Parent=Msa0013570-mRNA-1
chr1_1 CDS 21021714 21021806 21021714 ID=Msa0013570-mRNA-1:cds;Parent=Msa0013570-mRNA-1
chr1_1 CDS 21020687 21021164 21020687 ID=Msa0013570-mRNA-1:cds;Parent=Msa0013570-mRNA-1
chr1_1 CDS 21020415 21020587 21020415 ID=Msa0013570-mRNA-1:cds;Parent=Msa0013570-mRNA-1
chr1_1 CDS 21020058 21020313 21020058 ID=Msa0013570-mRNA-1:cds;Parent=Msa0013570-mRNA-1
chr1_1 CDS 21019906 21019968 21019906 ID=Msa0013570-mRNA-1:cds;Parent=Msa0013570-mRNA-1
chr1_1 CDS 21019600 21019745 21019600 ID=Msa0013570-mRNA-1:cds;Parent=Msa0013570-mRNA-1
chr1_1 CDS 21019258 21019479 21019258 ID=Msa0013570-mRNA-1:cds;Parent=Msa0013570-mRNA-1
chr1_1 CDS 21017515 21017946 21017515 ID=Msa0013570-mRNA-1:cds;Parent=Msa0013570-mRNA-1
Gene Sequence

>Msa0013570

ATGACTAGCAATAAGGGAAAGCATACCCTCTCTGCTTCTACTATTCGTTTCTTTAGAGTTATTACCACACCAATTCTTCAAGATGGAAAGCTTATGATACCAAAAGGTTTCACTAAGGACCATATGAATGACATGTCAAATCCAATGTTTCTCAAGACTCCAGATGGCAAAAATTGGGAAATGAGTGCGACTAAAATCAATGGGGATTTTTGGTTTCAAAAGGGTTGGAACGAATTTGCTACACATTATTCACTAGATCATGGGCACATGGTATTATTTCAATATGAAGAAAACTCTCATTTTGTGGTGCATATATTTTCCAAGAGTACCCTTGAGATTGAATATCCTTTCAATGACAATCAACATGAACAAAACAACTTTGACCAACAAAGTAGTGATGACGACTCCATTGAAATTTTTGATAAGTCACCTTCATGCAAGAAGAAGACTAGACCAAAATCACCAATTATGTGTCCTCAACCACATAAGAAATTGAGAAGTGACTCAAGTGAAGGTGTTGGAACAAGCTCGAGATTCCAAAACTTGCCTAAGCATCATGTCCAATCTAGTGAGGATACGGGTGCTAGCGCTGAATTCCGAAAAGTAAAGCACGAGCTAGAACAAGATCAAGACAAAAAGCAATACCAAGAGCAGGAGCAGTTAAATAGAGTTAGAAGCTTCAAATCAAATAATCCTTCTTTCAGGATTACCATGAAGTCTTCACATATTTATAGCACTTCCTTGTATGTCCCATCACAATTTGCTAACAATCATATGAAGAAAGAGCAAAGTGACATTCTTCTTCAACTCTTGGATGGGAGAGTTTGGGATGCTAAATATTTTTCTGGAAGAATTAAAGGTGGATGGAAGAAATTTGTAGTACACAACAAGTTGAAAATTGGGGATGTGTGTATTTTTGAACTAACTAAAAGCCAATACCTTACTTTGAAAGTAATAATATTTAGACTTGAGGAAGATCCACATTCCCCTCCCCTTCAAGAATCAGTTCAAAGAGACAAAGACTTCTCGGATGTTGAAAGTGAAACTATTATGACAAATAAAGGAGAGAAGGCAACCGAAAAAACTTCATTGCGGACAAAGGCTGAATTCTTTACGAATGAAGCTGAGAACCAAGCTGATAAATTCAACTCCAAATATCCATTTTTCAAGGTCAATATTATGCCAAATCAACGAGGGCATTCTAGATTGCATGTACCAAATTCCTTCATTACAAATTACTTGGATAACAAGGAACAGATGGTGATGTTAAAGTTTGGGAAGAAATTGTGGCCTGTAAAGTTGCATTGTTATTCCAACATGAAATCAGGCCAGTTTTGTAGAGGTTGGAAGCTATTTTGGGAAGAAAATAAATTGAAAGGTGGAGATGCATGTGTCTTTGAGCTTATCAAGAGGGAAGATGTTGTGCTTAATATGATTCCAAGGAATTTTGTAGAAAGATATTGGAAAGATGTATCAAATCCAATATCCCTTAAACTTCCAAATGAGTTTAAGTGCAAAATGTTTTGGGTACAACGTGGTTATGATATTTGGCTAGTGAATTGGAAAAGATTTGCACGATCGCTTAGATGTGGAGATCTTTTAGTTTTTCAATATAAAGGAGGGTCAGATTTTCATGTCATTGTATTAGATGATAGTAAATTGGAAATTGACTATTCAAGTATGAGATGCAACGACGAACAAGATTCTAACAAGCACTTTAAACAAGTAGAAGAAAGTGATTATGATTGTGTTGAGATTCTGAGTGATATTACTACACCTCAATGGACAAACATTGACAAGAAAAAAATTATTATGACTTCATCCCAGCAAAAAATCACAGCCAAGTTCATCTACTTCATTTGA
Protein sequence

>Msa0013570

MTSNKGKHTLSASTIRFFRVITTPILQDGKLMIPKGFTKDHMNDMSNPMFLKTPDGKNWEMSATKINGDFWFQKGWNEFATHYSLDHGHMVLFQYEENSHFVVHIFSKSTLEIEYPFNDNQHEQNNFDQQSSDDDSIEIFDKSPSCKKKTRPKSPIMCPQPHKKLRSDSSEGVGTSSRFQNLPKHHVQSSEDTGASAEFRKVKHELEQDQDKKQYQEQEQLNRVRSFKSNNPSFRITMKSSHIYSTSLYVPSQFANNHMKKEQSDILLQLLDGRVWDAKYFSGRIKGGWKKFVVHNKLKIGDVCIFELTKSQYLTLKVIIFRLEEDPHSPPLQESVQRDKDFSDVESETIMTNKGEKATEKTSLRTKAEFFTNEAENQADKFNSKYPFFKVNIMPNQRGHSRLHVPNSFITNYLDNKEQMVMLKFGKKLWPVKLHCYSNMKSGQFCRGWKLFWEENKLKGGDACVFELIKREDVVLNMIPRNFVERYWKDVSNPISLKLPNEFKCKMFWVQRGYDIWLVNWKRFARSLRCGDLLVFQYKGGSDFHVIVLDDSKLEIDYSSMRCNDEQDSNKHFKQVEESDYDCVEILSDITTPQWTNIDKKKIIMTSSQQKITAKFIYFI*