Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0013640 | A0A396GZ09 | 61.712 | 222 | 62 | 3 | 1 | 199 | 1 | 222 | 3.64e-74 | 236 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0013640 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0013640 | MtrunA17_Chr1g0194771 | 61.712 | 222 | 62 | 3 | 1 | 199 | 1 | 222 | 7.01e-78 | 236 |
| Msa0013640 | MtrunA17_Chr7g0215401 | 61.712 | 222 | 62 | 3 | 1 | 199 | 1 | 222 | 7.01e-78 | 236 |
| Msa0013640 | MtrunA17_Chr6g0476171 | 77.647 | 85 | 18 | 1 | 196 | 280 | 165 | 248 | 1.11e-40 | 141 |
| Msa0013640 | MtrunA17_Chr1g0174611 | 67.961 | 103 | 32 | 1 | 97 | 198 | 3 | 105 | 1.13e-31 | 113 |
| Msa0013640 | MtrunA17_Chr3g0087061 | 46.099 | 141 | 51 | 4 | 34 | 156 | 1 | 134 | 1.61e-22 | 90.5 |
| Msa0013640 | MtrunA17_Chr1g0163111 | 49.383 | 81 | 37 | 3 | 198 | 277 | 151 | 228 | 2.15e-17 | 79.3 |
| Msa0013640 | MtrunA17_Chr1g0163201 | 44.578 | 83 | 44 | 1 | 194 | 276 | 311 | 391 | 6.04e-15 | 74.3 |
| Msa0013640 | MtrunA17_Chr1g0163151 | 50.794 | 63 | 31 | 0 | 215 | 277 | 159 | 221 | 6.32e-15 | 72.0 |
| Msa0013640 | MtrunA17_Chr1g0163131 | 38.710 | 93 | 51 | 2 | 188 | 280 | 223 | 309 | 1.80e-14 | 72.4 |
| Msa0013640 | MtrunA17_Chr1g0163181 | 42.169 | 83 | 46 | 1 | 195 | 277 | 349 | 429 | 1.48e-13 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 60 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATAAATTCCTCAATCTT+TGG | 0.253556 | 1_1:+21051397 | None:intergenic |
| TTCTTCATTATCAACAGTTT+TGG | 0.286921 | 1_1:+21051200 | None:intergenic |
| ACTTGGCAAGGAAAACTTAA+TGG | 0.295584 | 1_1:-21051145 | Msa0013640:CDS |
| TATATTTAGTGGAAATTTAG+TGG | 0.337369 | 1_1:-21048438 | Msa0013640:CDS |
| TATTGTTGATACTGTTGATA+TGG | 0.349394 | 1_1:+21051507 | None:intergenic |
| AAGCGACATAATATATTTAG+TGG | 0.351035 | 1_1:-21048449 | Msa0013640:CDS |
| CAAACATTCTTCTAAACATC+TGG | 0.359210 | 1_1:+21048236 | None:intergenic |
| TCATCTGTATCTAAAGTTCA+TGG | 0.382921 | 1_1:-21051022 | Msa0013640:CDS |
| GTCATTCGTTCCTCTTCATA+AGG | 0.385541 | 1_1:+21051483 | None:intergenic |
| GAAAACTTAATGGAAGTAAA+GGG | 0.388770 | 1_1:-21051135 | Msa0013640:CDS |
| CGTGCAAAATCATGTATTCA+AGG | 0.415158 | 1_1:-21048270 | Msa0013640:CDS |
| GGAAAACTTAATGGAAGTAA+AGG | 0.437415 | 1_1:-21051136 | Msa0013640:CDS |
| TATGATCAACACCTCGATCA+TGG | 0.460947 | 1_1:-21048374 | Msa0013640:CDS |
| AGAGATCGCAAAGTGAAGAT+TGG | 0.467048 | 1_1:-21048320 | Msa0013640:CDS |
| GAGAAACAAGAACGGTTACT+TGG | 0.467881 | 1_1:-21051162 | Msa0013640:CDS |
| GAGGAATTTATCAATTCAGT+TGG | 0.483967 | 1_1:-21051388 | Msa0013640:CDS |
| GACAAAATCATGGCTGATCA+TGG | 0.485385 | 1_1:-21051564 | None:intergenic |
| CTGTTGATATGGTTCATACT+CGG | 0.487646 | 1_1:+21051518 | None:intergenic |
| TGGAATTCCTCCCGAAAAGA+AGG | 0.495310 | 1_1:-21051002 | Msa0013640:CDS |
| GATGATTCAAGCTCAAATCA+TGG | 0.502349 | 1_1:-21051364 | Msa0013640:CDS |
| GTGGAGTTGAAAGCAGAAGA+AGG | 0.502821 | 1_1:-21048419 | Msa0013640:CDS |
| AAATAGAACTTCCTCAAGAA+TGG | 0.503507 | 1_1:-21051239 | Msa0013640:CDS |
| TGTCGCTTCAACAGCTCACT+TGG | 0.504863 | 1_1:+21048464 | None:intergenic |
| ACTCATGACGGAGAGATTGT+TGG | 0.508531 | 1_1:-21051318 | Msa0013640:CDS |
| CCTTGTTCAAATCAAAGTTA+AGG | 0.514393 | 1_1:-21051062 | Msa0013640:CDS |
| TAAATTCCTCAATCTTTGGT+TGG | 0.517843 | 1_1:+21051401 | None:intergenic |
| CCTTAACTTTGATTTGAACA+AGG | 0.522092 | 1_1:+21051062 | None:intergenic |
| TGAGCAAGGCAGAAATAGAT+CGG | 0.529521 | 1_1:-21051104 | Msa0013640:CDS |
| GATCATGGGTGGTTCACTAA+AGG | 0.540814 | 1_1:-21048359 | Msa0013640:CDS |
| AGAAGAAGGAACATGGTTTG+TGG | 0.547977 | 1_1:-21048405 | Msa0013640:CDS |
| ATGATCAACACCTCGATCAT+GGG | 0.558968 | 1_1:-21048373 | Msa0013640:CDS |
| TGTTGATATGGTTCATACTC+GGG | 0.560223 | 1_1:+21051519 | None:intergenic |
| TCAGAATCTGACCATTCTTG+AGG | 0.560426 | 1_1:+21051228 | None:intergenic |
| AACAATCTCTCCGTCATGAG+TGG | 0.562748 | 1_1:+21051320 | None:intergenic |
| GTCATGAGTGGATTGAATGT+TGG | 0.563231 | 1_1:+21051332 | None:intergenic |
| AACTTTAGATACAGATGATG+TGG | 0.565329 | 1_1:+21051027 | None:intergenic |
| AAAATACCAACCAAAGATTG+AGG | 0.567322 | 1_1:-21051407 | Msa0013640:CDS |
| GAGCAAGGCAGAAATAGATC+GGG | 0.571796 | 1_1:-21051103 | Msa0013640:CDS |
| AAAACTTAATGGAAGTAAAG+GGG | 0.579537 | 1_1:-21051134 | Msa0013640:CDS |
| ACAAGAACGGTTACTTGGCA+AGG | 0.581784 | 1_1:-21051157 | Msa0013640:CDS |
| AATCAAAGTTAAGGAGGACA+TGG | 0.587517 | 1_1:-21051053 | Msa0013640:CDS |
| TGAGGAAGTTCTATTTCAAG+TGG | 0.588658 | 1_1:+21051246 | None:intergenic |
| ATGGGTGGTTCACTAAAGGT+TGG | 0.588689 | 1_1:-21048355 | Msa0013640:CDS |
| TCAACAATATCCTTATGAAG+AGG | 0.590736 | 1_1:-21051493 | Msa0013640:CDS |
| TGTTCAAATCAAAGTTAAGG+AGG | 0.602276 | 1_1:-21051059 | Msa0013640:CDS |
| TGAAAGCAGAAGAAGGAACA+TGG | 0.607559 | 1_1:-21048412 | Msa0013640:CDS |
| GACGGAGAGATTGTTGGAGA+AGG | 0.608126 | 1_1:-21051312 | Msa0013640:CDS |
| AAAGGGGAAGAAAGTGAGCA+AGG | 0.608466 | 1_1:-21051118 | Msa0013640:CDS |
| AACATTCAATCCACTCATGA+CGG | 0.612069 | 1_1:-21051330 | Msa0013640:CDS |
| AGAAGGTGTTGTTGAACTTG+AGG | 0.616557 | 1_1:-21051295 | Msa0013640:CDS |
| TGATAATGAAGAATTGATAG+AGG | 0.625336 | 1_1:-21051190 | Msa0013640:CDS |
| ATCAACACCTCGATCATGGG+TGG | 0.635921 | 1_1:-21048370 | Msa0013640:CDS |
| CCCGAAAAGAAGGAATACAA+AGG | 0.660541 | 1_1:-21050992 | Msa0013640:CDS |
| AGAAGGAACATGGTTTGTGG+AGG | 0.660933 | 1_1:-21048402 | Msa0013640:CDS |
| TGATATGGTTCATACTCGGG+TGG | 0.661398 | 1_1:+21051522 | None:intergenic |
| TAATGAAGAATTGATAGAGG+TGG | 0.664949 | 1_1:-21051187 | Msa0013640:CDS |
| TAGTGAACCACCCATGATCG+AGG | 0.666809 | 1_1:+21048363 | None:intergenic |
| AGAATGGTCAGATTCTGAAG+AGG | 0.667387 | 1_1:-21051223 | Msa0013640:CDS |
| AGGTGGTAGAGAAACAAGAA+CGG | 0.711838 | 1_1:-21051170 | Msa0013640:CDS |
| AGAGGAACGAATGACCAATG+TGG | 0.725252 | 1_1:-21051475 | Msa0013640:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGATATTATTTTAGATATTT+TGG | - | chr1_1:21050793-21050812 | Msa0013640:intron | 10.0% |
| !!! | GATATTATTTTAGATATTTT+GGG | - | chr1_1:21050794-21050813 | Msa0013640:intron | 10.0% |
| !!! | ATATTATTTTAGATATTTTG+GGG | - | chr1_1:21050795-21050814 | Msa0013640:intron | 10.0% |
| !!! | ACACAATTTAAAACAATTAT+TGG | + | chr1_1:21049295-21049314 | None:intergenic | 15.0% |
| !!! | AAATTTTATGTCAAGTATAA+TGG | - | chr1_1:21049655-21049674 | Msa0013640:intron | 15.0% |
| !!! | AGATAATATATATTAGTCTT+AGG | - | chr1_1:21050853-21050872 | Msa0013640:intron | 15.0% |
| !!! | TTGTTTTAATTTGAACATTG+TGG | - | chr1_1:21048981-21049000 | Msa0013640:intron | 20.0% |
| !!! | AATTGTTTTAAATTGTGTGA+AGG | - | chr1_1:21049297-21049316 | Msa0013640:intron | 20.0% |
| !!! | TCGACAATTTATTCTATTTT+TGG | + | chr1_1:21049779-21049798 | None:intergenic | 20.0% |
| !!! | AAATTTTAATGGTTGATACA+AGG | - | chr1_1:21049859-21049878 | Msa0013640:intron | 20.0% |
| !! | TAGTAGAATTCTAAATTAGT+TGG | - | chr1_1:21050197-21050216 | Msa0013640:intron | 20.0% |
| !! | ATAATATCATAGAGAGAAAT+AGG | - | chr1_1:21050919-21050938 | Msa0013640:intron | 20.0% |
| !! | TAATATCATAGAGAGAAATA+GGG | - | chr1_1:21050920-21050939 | Msa0013640:intron | 20.0% |
| !! | AAGAGATTACATATTTAACA+AGG | + | chr1_1:21051104-21051123 | None:intergenic | 20.0% |
| !! | TATATTTAGTGGAAATTTAG+TGG | - | chr1_1:21051364-21051383 | Msa0013640:CDS | 20.0% |
| ! | TATTGTTGATACTGTTGATA+TGG | + | chr1_1:21048298-21048317 | None:intergenic | 25.0% |
| ! | TTGATAAATTCCTCAATCTT+TGG | + | chr1_1:21048408-21048427 | None:intergenic | 25.0% |
| !! | TTCTTCATTATCAACAGTTT+TGG | + | chr1_1:21048605-21048624 | None:intergenic | 25.0% |
| !! | TGATAATGAAGAATTGATAG+AGG | - | chr1_1:21048612-21048631 | Msa0013640:intron | 25.0% |
| ! | GAAAACTTAATGGAAGTAAA+GGG | - | chr1_1:21048667-21048686 | Msa0013640:intron | 25.0% |
| ! | AAAACTTAATGGAAGTAAAG+GGG | - | chr1_1:21048668-21048687 | Msa0013640:intron | 25.0% |
| ! | CTGGATATTGAAAAGTTAAA+AGG | + | chr1_1:21049488-21049507 | None:intergenic | 25.0% |
| ! | AAGTAAACATTGAAGGTTTA+GGG | + | chr1_1:21049559-21049578 | None:intergenic | 25.0% |
| !! | TTGAATTTTCCCTTACTTTA+AGG | + | chr1_1:21049592-21049611 | None:intergenic | 25.0% |
| ! | AAGTAAGGGAAAATTCAAAT+AGG | - | chr1_1:21049594-21049613 | Msa0013640:intron | 25.0% |
| ! | AGTAAGGGAAAATTCAAATA+GGG | - | chr1_1:21049595-21049614 | Msa0013640:intron | 25.0% |
| !! | GGAAGATTGTGAAATTTTAA+TGG | - | chr1_1:21049848-21049867 | Msa0013640:intron | 25.0% |
| ! | ACAAAAGAAATGTCATATGT+GGG | + | chr1_1:21049922-21049941 | None:intergenic | 25.0% |
| ! | TACAAAAGAAATGTCATATG+TGG | + | chr1_1:21049923-21049942 | None:intergenic | 25.0% |
| !! | TTTCAAAAGGCATAAAAACA+TGG | + | chr1_1:21049982-21050001 | None:intergenic | 25.0% |
| ! | CAATTGAAATCAAATGAATG+AGG | + | chr1_1:21050071-21050090 | None:intergenic | 25.0% |
| ! | ATGATAAGTAAAGCGTAATA+AGG | + | chr1_1:21050470-21050489 | None:intergenic | 25.0% |
| ! | AAGCGACATAATATATTTAG+TGG | - | chr1_1:21051353-21051372 | Msa0013640:CDS | 25.0% |
| TCAACAATATCCTTATGAAG+AGG | - | chr1_1:21048309-21048328 | Msa0013640:CDS | 30.0% | |
| !! | GTTCAAAGTATTTTCCACAT+TGG | + | chr1_1:21048344-21048363 | None:intergenic | 30.0% |
| ! | GGTATTTTGCATGTTTATCA+TGG | + | chr1_1:21048383-21048402 | None:intergenic | 30.0% |
| AAAATACCAACCAAAGATTG+AGG | - | chr1_1:21048395-21048414 | Msa0013640:CDS | 30.0% | |
| TAAATTCCTCAATCTTTGGT+TGG | + | chr1_1:21048404-21048423 | None:intergenic | 30.0% | |
| GAGGAATTTATCAATTCAGT+TGG | - | chr1_1:21048414-21048433 | Msa0013640:CDS | 30.0% | |
| AAATAGAACTTCCTCAAGAA+TGG | - | chr1_1:21048563-21048582 | Msa0013640:intron | 30.0% | |
| TAATGAAGAATTGATAGAGG+TGG | - | chr1_1:21048615-21048634 | Msa0013640:intron | 30.0% | |
| GGAAAACTTAATGGAAGTAA+AGG | - | chr1_1:21048666-21048685 | Msa0013640:intron | 30.0% | |
| !! | CCTTAACTTTGATTTGAACA+AGG | + | chr1_1:21048743-21048762 | None:intergenic | 30.0% |
| CCTTGTTCAAATCAAAGTTA+AGG | - | chr1_1:21048740-21048759 | Msa0013640:intron | 30.0% | |
| TGTTCAAATCAAAGTTAAGG+AGG | - | chr1_1:21048743-21048762 | Msa0013640:intron | 30.0% | |
| AACTTTAGATACAGATGATG+TGG | + | chr1_1:21048778-21048797 | None:intergenic | 30.0% | |
| ! | TCATCTGTATCTAAAGTTCA+TGG | - | chr1_1:21048780-21048799 | Msa0013640:intron | 30.0% |
| ! | TCCTTTGTATTCCTTCTTTT+CGG | + | chr1_1:21048814-21048833 | None:intergenic | 30.0% |
| GTAAAAGAACTTACCAAGTT+GGG | + | chr1_1:21048922-21048941 | None:intergenic | 30.0% | |
| AGTAAAAGAACTTACCAAGT+TGG | + | chr1_1:21048923-21048942 | None:intergenic | 30.0% | |
| ! | TACAAGTTTCCAGTTTTTCT+AGG | - | chr1_1:21049092-21049111 | Msa0013640:intron | 30.0% |
| GAGTAAAAACCTAGAAAAAC+TGG | + | chr1_1:21049104-21049123 | None:intergenic | 30.0% | |
| ! | TCTAGGTTTTTACTCGAATA+TGG | - | chr1_1:21049109-21049128 | Msa0013640:intron | 30.0% |
| CTGGTATTCATTGTTTAACT+CGG | - | chr1_1:21049253-21049272 | Msa0013640:intron | 30.0% | |
| ! | TTTTAAATTGTGTGAAGGCA+TGG | - | chr1_1:21049302-21049321 | Msa0013640:intron | 30.0% |
| GAATTGTCAGTTCATAATTG+AGG | + | chr1_1:21049440-21049459 | None:intergenic | 30.0% | |
| CAAGTAAACATTGAAGGTTT+AGG | + | chr1_1:21049560-21049579 | None:intergenic | 30.0% | |
| !!! | GGTGTATTTTGATTCAAGTT+GGG | - | chr1_1:21049616-21049635 | Msa0013640:intron | 30.0% |
| !!! | GTGTATTTTGATTCAAGTTG+GGG | - | chr1_1:21049617-21049636 | Msa0013640:intron | 30.0% |
| TATCTTTGATCAAGACAACA+TGG | - | chr1_1:21049686-21049705 | Msa0013640:intron | 30.0% | |
| AATCAAAAAGCCTATCAAAG+AGG | + | chr1_1:21049891-21049910 | None:intergenic | 30.0% | |
| CAAAAGAAATGTCATATGTG+GGG | + | chr1_1:21049921-21049940 | None:intergenic | 30.0% | |
| GCATAAAAACATGGATCAAA+AGG | + | chr1_1:21049973-21049992 | None:intergenic | 30.0% | |
| !!! | ATGCCTTTTGAAACGATATT+TGG | - | chr1_1:21049989-21050008 | Msa0013640:intron | 30.0% |
| CATCCAAATATCGTTTCAAA+AGG | + | chr1_1:21049995-21050014 | None:intergenic | 30.0% | |
| !!! | CTTTTGAAACGATATTTGGA+TGG | - | chr1_1:21049993-21050012 | Msa0013640:intron | 30.0% |
| ! | TACTTTCATAGAAGTGTGTT+AGG | - | chr1_1:21050097-21050116 | Msa0013640:intron | 30.0% |
| TTGACATGAACTTTGTACTT+AGG | - | chr1_1:21050158-21050177 | Msa0013640:intron | 30.0% | |
| ATGATTTAAAAGTGAATGCG+CGG | + | chr1_1:21050237-21050256 | None:intergenic | 30.0% | |
| GACAAACAAAGAGTTAAGTT+GGG | - | chr1_1:21050335-21050354 | Msa0013640:intron | 30.0% | |
| ! | ACAAACAAAGAGTTAAGTTG+GGG | - | chr1_1:21050336-21050355 | Msa0013640:intron | 30.0% |
| !!! | CGCACTTTTTCATGATAAAT+TGG | + | chr1_1:21050541-21050560 | None:intergenic | 30.0% |
| ! | TATCATGAAAAAGTGCGAAA+TGG | - | chr1_1:21050544-21050563 | Msa0013640:intron | 30.0% |
| ! | AATTTCGCTATTAGCGATTT+TGG | - | chr1_1:21050687-21050706 | Msa0013640:intron | 30.0% |
| ATCTAACAAGAATAGCAAGT+GGG | + | chr1_1:21050754-21050773 | None:intergenic | 30.0% | |
| TATCTAACAAGAATAGCAAG+TGG | + | chr1_1:21050755-21050774 | None:intergenic | 30.0% | |
| ! | ATATAGAGTGAGAGTGATTT+TGG | - | chr1_1:21050950-21050969 | Msa0013640:intron | 30.0% |
| TATTTAGCTACACATCATCA+TGG | + | chr1_1:21051053-21051072 | None:intergenic | 30.0% | |
| TGTAGCTAAATACTCTTTGT+TGG | - | chr1_1:21051061-21051080 | Msa0013640:CDS | 30.0% | |
| GTAGCTAAATACTCTTTGTT+GGG | - | chr1_1:21051062-21051081 | Msa0013640:CDS | 30.0% | |
| TCTCTTGATCTTGCAATATA+TGG | - | chr1_1:21051118-21051137 | Msa0013640:CDS | 30.0% | |
| CTAGAGTAGCAATATATCTT+AGG | - | chr1_1:21051236-21051255 | Msa0013640:CDS | 30.0% | |
| TTTGTTCTTATATATGCAGC+TGG | - | chr1_1:21051307-21051326 | Msa0013640:CDS | 30.0% | |
| TGTTGATATGGTTCATACTC+GGG | + | chr1_1:21048286-21048305 | None:intergenic | 35.0% | |
| CTGTTGATATGGTTCATACT+CGG | + | chr1_1:21048287-21048306 | None:intergenic | 35.0% | |
| GATGATTCAAGCTCAAATCA+TGG | - | chr1_1:21048438-21048457 | Msa0013640:CDS | 35.0% | |
| AACATTCAATCCACTCATGA+CGG | - | chr1_1:21048472-21048491 | Msa0013640:CDS | 35.0% | |
| TGAGGAAGTTCTATTTCAAG+TGG | + | chr1_1:21048559-21048578 | None:intergenic | 35.0% | |
| ACTTGGCAAGGAAAACTTAA+TGG | - | chr1_1:21048657-21048676 | Msa0013640:intron | 35.0% | |
| AATCAAAGTTAAGGAGGACA+TGG | - | chr1_1:21048749-21048768 | Msa0013640:intron | 35.0% | |
| ! | CCTTTGTATTCCTTCTTTTC+GGG | + | chr1_1:21048813-21048832 | None:intergenic | 35.0% |
| ! | ATGTATTGTCCGTCTCATTT+TGG | - | chr1_1:21048836-21048855 | Msa0013640:intron | 35.0% |
| ACGTTAAACAAGCACTTGTT+GGG | - | chr1_1:21048890-21048909 | Msa0013640:intron | 35.0% | |
| TTTAAGCAAGAGCGATATAG+AGG | + | chr1_1:21049013-21049032 | None:intergenic | 35.0% | |
| AAAACTGGAAACTTGTACCT+TGG | + | chr1_1:21049089-21049108 | None:intergenic | 35.0% | |
| ! | ACTTTTAGGCTAGAACTAAG+TGG | + | chr1_1:21049197-21049216 | None:intergenic | 35.0% |
| !! | TTAGTTCTAGCCTAAAAGTG+AGG | - | chr1_1:21049198-21049217 | Msa0013640:intron | 35.0% |
| TGCATATGTACAAACACTTG+AGG | + | chr1_1:21049227-21049246 | None:intergenic | 35.0% | |
| CAAGTGTTTGTACATATGCA+AGG | - | chr1_1:21049227-21049246 | Msa0013640:intron | 35.0% | |
| AAAGTGGGTCAAAAATGAAC+TGG | + | chr1_1:21049507-21049526 | None:intergenic | 35.0% | |
| ACATATCAGAGTCTCAAAGT+GGG | + | chr1_1:21049522-21049541 | None:intergenic | 35.0% | |
| AACATATCAGAGTCTCAAAG+TGG | + | chr1_1:21049523-21049542 | None:intergenic | 35.0% | |
| AAGGGACAAGTAAACATTGA+AGG | + | chr1_1:21049566-21049585 | None:intergenic | 35.0% | |
| ! | TCCCTTTTGCCTTAAAGTAA+GGG | - | chr1_1:21049580-21049599 | Msa0013640:intron | 35.0% |
| !! | TCCCTTACTTTAAGGCAAAA+GGG | + | chr1_1:21049584-21049603 | None:intergenic | 35.0% |
| !! | TTCCCTTACTTTAAGGCAAA+AGG | + | chr1_1:21049585-21049604 | None:intergenic | 35.0% |
| !!! | GGGTGTATTTTGATTCAAGT+TGG | - | chr1_1:21049615-21049634 | Msa0013640:intron | 35.0% |
| TACCAATCATTACAAACCCT+TGG | + | chr1_1:21049827-21049846 | None:intergenic | 35.0% | |
| AAGGGTTTGTAATGATTGGT+AGG | - | chr1_1:21049826-21049845 | Msa0013640:intron | 35.0% | |
| AGGGTTTGTAATGATTGGTA+GGG | - | chr1_1:21049827-21049846 | Msa0013640:intron | 35.0% | |
| AAGGAATGTTCCTCTTTGAT+AGG | - | chr1_1:21049878-21049897 | Msa0013640:intron | 35.0% | |
| ACATGGATCAAAAGGTCTTT+GGG | + | chr1_1:21049965-21049984 | None:intergenic | 35.0% | |
| AACATGGATCAAAAGGTCTT+TGG | + | chr1_1:21049966-21049985 | None:intergenic | 35.0% | |
| ! | TGGAATGTTAACTTGATTGC+CGG | - | chr1_1:21050030-21050049 | Msa0013640:intron | 35.0% |
| TGATTTAAAAGTGAATGCGC+GGG | + | chr1_1:21050236-21050255 | None:intergenic | 35.0% | |
| TGACAAGACACAAGTACAAA+AGG | + | chr1_1:21050282-21050301 | None:intergenic | 35.0% | |
| !! | GATTTTCGATCCTTTGTTTG+AGG | - | chr1_1:21050313-21050332 | Msa0013640:intron | 35.0% |
| ! | CTTTGTTTGTCCTCAAACAA+AGG | + | chr1_1:21050326-21050345 | None:intergenic | 35.0% |
| GGACAAACAAAGAGTTAAGT+TGG | - | chr1_1:21050334-21050353 | Msa0013640:intron | 35.0% | |
| CTTGTTCTGCAAGTTATTGA+AGG | - | chr1_1:21050418-21050437 | Msa0013640:intron | 35.0% | |
| ! | GGCATTTAACGCTTATTTCT+CGG | + | chr1_1:21050449-21050468 | None:intergenic | 35.0% |
| ! | ATTACTCTATCCTTTTGTGC+AGG | - | chr1_1:21050488-21050507 | Msa0013640:intron | 35.0% |
| CACACACATGGCTATATATA+TGG | + | chr1_1:21051270-21051289 | None:intergenic | 35.0% | |
| ATTCTACACATTCACACACA+TGG | + | chr1_1:21051282-21051301 | None:intergenic | 35.0% | |
| CGTGCAAAATCATGTATTCA+AGG | - | chr1_1:21051532-21051551 | Msa0013640:CDS | 35.0% | |
| GTCATTCGTTCCTCTTCATA+AGG | + | chr1_1:21048322-21048341 | None:intergenic | 40.0% | |
| !! | GTCATGAGTGGATTGAATGT+TGG | + | chr1_1:21048473-21048492 | None:intergenic | 40.0% |
| !! | AGAAGGTGTTGTTGAACTTG+AGG | - | chr1_1:21048507-21048526 | Msa0013640:intron | 40.0% |
| TCAGAATCTGACCATTCTTG+AGG | + | chr1_1:21048577-21048596 | None:intergenic | 40.0% | |
| ! | AGAATGGTCAGATTCTGAAG+AGG | - | chr1_1:21048579-21048598 | Msa0013640:intron | 40.0% |
| AGGTGGTAGAGAAACAAGAA+CGG | - | chr1_1:21048632-21048651 | Msa0013640:intron | 40.0% | |
| GAGAAACAAGAACGGTTACT+TGG | - | chr1_1:21048640-21048659 | Msa0013640:intron | 40.0% | |
| TGAGCAAGGCAGAAATAGAT+CGG | - | chr1_1:21048698-21048717 | Msa0013640:intron | 40.0% | |
| !! | TTGTATTCCTTCTTTTCGGG+AGG | + | chr1_1:21048810-21048829 | None:intergenic | 40.0% |
| CCCGAAAAGAAGGAATACAA+AGG | - | chr1_1:21048810-21048829 | Msa0013640:intron | 40.0% | |
| GACGTTAAACAAGCACTTGT+TGG | - | chr1_1:21048889-21048908 | Msa0013640:intron | 40.0% | |
| ! | TTAAACAAGCACTTGTTGGG+AGG | - | chr1_1:21048893-21048912 | Msa0013640:intron | 40.0% |
| !! | CTTGAGGTTTCCTCACTTTT+AGG | + | chr1_1:21049211-21049230 | None:intergenic | 40.0% |
| TTGTACATATGCAAGGAGAC+TGG | - | chr1_1:21049234-21049253 | Msa0013640:intron | 40.0% | |
| ! | TGAAGGCATGGATATGATCA+AGG | - | chr1_1:21049314-21049333 | Msa0013640:intron | 40.0% |
| AAATACTCGCTCTTCTCACA+AGG | + | chr1_1:21049386-21049405 | None:intergenic | 40.0% | |
| ATTGAGGACTCCGATTCATT+TGG | + | chr1_1:21049424-21049443 | None:intergenic | 40.0% | |
| ! | GTCCCTTTTGCCTTAAAGTA+AGG | - | chr1_1:21049579-21049598 | Msa0013640:intron | 40.0% |
| CACCAAGGGTTTGTAATGAT+TGG | - | chr1_1:21049822-21049841 | Msa0013640:intron | 40.0% | |
| TTGGGGGTTATAAATTGGCT+TGG | + | chr1_1:21049947-21049966 | None:intergenic | 40.0% | |
| ! | GGTCTTTGGGGGTTATAAAT+TGG | + | chr1_1:21049952-21049971 | None:intergenic | 40.0% |
| ATGGATCAAAAGGTCTTTGG+GGG | + | chr1_1:21049963-21049982 | None:intergenic | 40.0% | |
| CATGGATCAAAAGGTCTTTG+GGG | + | chr1_1:21049964-21049983 | None:intergenic | 40.0% | |
| GGATGGACACATAACTTGAT+TGG | - | chr1_1:21050010-21050029 | Msa0013640:intron | 40.0% | |
| GAGGATTATGAACACACATC+CGG | + | chr1_1:21050052-21050071 | None:intergenic | 40.0% | |
| ! | TCATAGAAGTGTGTTAGGTG+TGG | - | chr1_1:21050102-21050121 | Msa0013640:intron | 40.0% |
| !! | GTGAGAGTGATTTTGGAAGT+TGG | - | chr1_1:21050957-21050976 | Msa0013640:intron | 40.0% |
| AAAGGAAGGATTCATTCTCC+TGG | + | chr1_1:21051008-21051027 | None:intergenic | 40.0% | |
| ATACTCTTTGTTGGGATGAG+AGG | - | chr1_1:21051070-21051089 | Msa0013640:CDS | 40.0% | |
| ! | CCAAAGCATCTTGAATCTCA+TGG | + | chr1_1:21051194-21051213 | None:intergenic | 40.0% |
| CCATGAGATTCAAGATGCTT+TGG | - | chr1_1:21051191-21051210 | Msa0013640:CDS | 40.0% | |
| TGAAAGCAGAAGAAGGAACA+TGG | - | chr1_1:21051390-21051409 | Msa0013640:CDS | 40.0% | |
| AGAAGAAGGAACATGGTTTG+TGG | - | chr1_1:21051397-21051416 | Msa0013640:CDS | 40.0% | |
| TATGATCAACACCTCGATCA+TGG | - | chr1_1:21051428-21051447 | Msa0013640:CDS | 40.0% | |
| ATGATCAACACCTCGATCAT+GGG | - | chr1_1:21051429-21051448 | Msa0013640:CDS | 40.0% | |
| AGAGATCGCAAAGTGAAGAT+TGG | - | chr1_1:21051482-21051501 | Msa0013640:CDS | 40.0% | |
| TGATATGGTTCATACTCGGG+TGG | + | chr1_1:21048283-21048302 | None:intergenic | 45.0% | |
| AGAGGAACGAATGACCAATG+TGG | - | chr1_1:21048327-21048346 | Msa0013640:CDS | 45.0% | |
| AACAATCTCTCCGTCATGAG+TGG | + | chr1_1:21048485-21048504 | None:intergenic | 45.0% | |
| ! | ACTCATGACGGAGAGATTGT+TGG | - | chr1_1:21048484-21048503 | Msa0013640:intron | 45.0% |
| ACAAGAACGGTTACTTGGCA+AGG | - | chr1_1:21048645-21048664 | Msa0013640:intron | 45.0% | |
| AAAGGGGAAGAAAGTGAGCA+AGG | - | chr1_1:21048684-21048703 | Msa0013640:intron | 45.0% | |
| GAGCAAGGCAGAAATAGATC+GGG | - | chr1_1:21048699-21048718 | Msa0013640:intron | 45.0% | |
| TGGAATTCCTCCCGAAAAGA+AGG | - | chr1_1:21048800-21048819 | Msa0013640:intron | 45.0% | |
| TTAGGGTGGCCAAAATGAGA+CGG | + | chr1_1:21048848-21048867 | None:intergenic | 45.0% | |
| TTTGGCCACCCTAACGAAAA+AGG | - | chr1_1:21048854-21048873 | Msa0013640:intron | 45.0% | |
| GTGATTAAAGCGCAAAGCCA+AGG | - | chr1_1:21049069-21049088 | Msa0013640:intron | 45.0% | |
| CTCACAAGGTAGGCTATTTG+TGG | + | chr1_1:21049372-21049391 | None:intergenic | 45.0% | |
| ! | CCGATTCATTTGGCTCAAGT+GGG | + | chr1_1:21049414-21049433 | None:intergenic | 45.0% |
| CCCACTTGAGCCAAATGAAT+CGG | - | chr1_1:21049411-21049430 | Msa0013640:intron | 45.0% | |
| ! | TCCGATTCATTTGGCTCAAG+TGG | + | chr1_1:21049415-21049434 | None:intergenic | 45.0% |
| !! | TGATTCAAGTTGGGGAGAGA+AGG | - | chr1_1:21049625-21049644 | Msa0013640:intron | 45.0% |
| TGCTTCATGTGTGAACACCA+AGG | - | chr1_1:21049807-21049826 | Msa0013640:intron | 45.0% | |
| GCTTCATGTGTGAACACCAA+GGG | - | chr1_1:21049808-21049827 | Msa0013640:intron | 45.0% | |
| GAGGCTAATTCCTGCACAAA+AGG | + | chr1_1:21050501-21050520 | None:intergenic | 45.0% | |
| GGTCTTTGATCAGTGTCTTG+AGG | + | chr1_1:21050520-21050539 | None:intergenic | 45.0% | |
| GTCCAGCAAGCTTGAAGAAA+TGG | - | chr1_1:21050575-21050594 | Msa0013640:intron | 45.0% | |
| AGTCCAGAGAGATACGCTAT+TGG | - | chr1_1:21050645-21050664 | Msa0013640:intron | 45.0% | |
| AGATACGCTATTGGCGTATC+TGG | - | chr1_1:21050654-21050673 | Msa0013640:intron | 45.0% | |
| TCCTTTGTTGAGACATCACC+AGG | - | chr1_1:21050987-21051006 | Msa0013640:CDS | 45.0% | |
| ! | TCCTGGTGATGTCTCAACAA+AGG | + | chr1_1:21050991-21051010 | None:intergenic | 45.0% |
| CAAGGATGGCTTGAAAAGGA+AGG | + | chr1_1:21051022-21051041 | None:intergenic | 45.0% | |
| CTTGCAAGGATGGCTTGAAA+AGG | + | chr1_1:21051026-21051045 | None:intergenic | 45.0% | |
| !! | CTTTTCAAGCCATCCTTGCA+AGG | - | chr1_1:21051024-21051043 | Msa0013640:CDS | 45.0% |
| ATCATCATGGAAGCCTTGCA+AGG | + | chr1_1:21051040-21051059 | None:intergenic | 45.0% | |
| GTGGAGTTGAAAGCAGAAGA+AGG | - | chr1_1:21051383-21051402 | Msa0013640:CDS | 45.0% | |
| ! | AGAAGGAACATGGTTTGTGG+AGG | - | chr1_1:21051400-21051419 | Msa0013640:CDS | 45.0% |
| GATCATGGGTGGTTCACTAA+AGG | - | chr1_1:21051443-21051462 | Msa0013640:CDS | 45.0% | |
| ATGGGTGGTTCACTAAAGGT+TGG | - | chr1_1:21051447-21051466 | Msa0013640:CDS | 45.0% | |
| GACGGAGAGATTGTTGGAGA+AGG | - | chr1_1:21048490-21048509 | Msa0013640:intron | 50.0% | |
| !! | GCTCGACGCCTTTTTCGTTA+GGG | + | chr1_1:21048865-21048884 | None:intergenic | 50.0% |
| !! | AGCTCGACGCCTTTTTCGTT+AGG | + | chr1_1:21048866-21048885 | None:intergenic | 50.0% |
| ACTCGCTCTTCTCACAAGGT+AGG | + | chr1_1:21049382-21049401 | None:intergenic | 50.0% | |
| CGCCATTTCTTCAAGCTTGC+TGG | + | chr1_1:21050580-21050599 | None:intergenic | 50.0% | |
| ACGCCAATAGCGTATCTCTC+TGG | + | chr1_1:21050651-21050670 | None:intergenic | 50.0% | |
| TGGCGCTATTAGCGTGAGTT+AGG | - | chr1_1:21050707-21050726 | Msa0013640:intron | 50.0% | |
| CGCTATTAGCGTGAGTTAGG+CGG | - | chr1_1:21050710-21050729 | Msa0013640:intron | 50.0% | |
| ! | GGCGGTTTGCTCAATTCAAG+TGG | - | chr1_1:21050728-21050747 | Msa0013640:intron | 50.0% |
| TCATGGAAGCCTTGCAAGGA+TGG | + | chr1_1:21051036-21051055 | None:intergenic | 50.0% | |
| ! | TGTCGCTTCAACAGCTCACT+TGG | + | chr1_1:21051341-21051360 | None:intergenic | 50.0% |
| ATCAACACCTCGATCATGGG+TGG | - | chr1_1:21051432-21051451 | Msa0013640:CDS | 50.0% | |
| TAGTGAACCACCCATGATCG+AGG | + | chr1_1:21051442-21051461 | None:intergenic | 50.0% | |
| !! | CGACGCCTTTTTCGTTAGGG+TGG | + | chr1_1:21048862-21048881 | None:intergenic | 55.0% |
| TGTTGGGAGGCAACCCAACT+TGG | - | chr1_1:21048906-21048925 | Msa0013640:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 21048247 | 21051577 | 21048247 | ID=Msa0013640;Name=Msa0013640 |
| chr1_1 | mRNA | 21048247 | 21051577 | 21048247 | ID=Msa0013640-mRNA-1;Parent=Msa0013640;Name=Msa0013640-mRNA-1;_AED=0.74;_eAED=0.74;_QI=0|0|0|0.5|1|1|2|0|280 |
| chr1_1 | exon | 21050987 | 21051577 | 21050987 | ID=Msa0013640-mRNA-1:exon:7507;Parent=Msa0013640-mRNA-1 |
| chr1_1 | exon | 21048247 | 21048498 | 21048247 | ID=Msa0013640-mRNA-1:exon:7506;Parent=Msa0013640-mRNA-1 |
| chr1_1 | CDS | 21050987 | 21051577 | 21050987 | ID=Msa0013640-mRNA-1:cds;Parent=Msa0013640-mRNA-1 |
| chr1_1 | CDS | 21048247 | 21048498 | 21048247 | ID=Msa0013640-mRNA-1:cds;Parent=Msa0013640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
