Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0013710 | sp|Q8L3W1|VRN1_ARATH | 25.602 | 332 | 181 | 10 | 15 | 288 | 6 | 329 | 3.40e-20 | 92.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0013710 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0013710 | MtrunA17_Chr1g0163221 | 91.234 | 308 | 22 | 2 | 1 | 308 | 1 | 303 | 0.0 | 530 |
| Msa0013710 | MtrunA17_Chr4g0067431 | 64.329 | 328 | 93 | 6 | 1 | 308 | 1 | 324 | 2.12e-142 | 404 |
| Msa0013710 | MtrunA17_Chr6g0467351 | 59.664 | 238 | 75 | 3 | 1 | 224 | 1 | 231 | 1.25e-95 | 282 |
| Msa0013710 | MtrunA17_Chr1g0163061 | 51.321 | 265 | 69 | 3 | 1 | 205 | 1 | 265 | 4.46e-69 | 216 |
| Msa0013710 | MtrunA17_Chr1g0163131 | 31.935 | 310 | 179 | 13 | 1 | 288 | 1 | 300 | 9.67e-34 | 125 |
| Msa0013710 | MtrunA17_Chr3g0131891 | 27.891 | 294 | 201 | 7 | 9 | 295 | 13 | 302 | 8.22e-30 | 115 |
| Msa0013710 | MtrunA17_Chr1g0163071 | 28.526 | 312 | 175 | 9 | 31 | 308 | 2 | 299 | 8.55e-30 | 115 |
| Msa0013710 | MtrunA17_Chr3g0103181 | 29.097 | 299 | 179 | 10 | 7 | 295 | 4 | 279 | 2.29e-29 | 113 |
| Msa0013710 | MtrunA17_Chr6g0467361 | 66.292 | 89 | 26 | 3 | 218 | 303 | 7 | 94 | 5.38e-29 | 107 |
| Msa0013710 | MtrunA17_Chr1g0163261 | 30.070 | 286 | 181 | 9 | 15 | 294 | 9 | 281 | 1.57e-28 | 111 |
| Msa0013710 | MtrunA17_Chr1g0163181 | 28.475 | 295 | 180 | 10 | 19 | 294 | 9 | 291 | 2.62e-28 | 113 |
| Msa0013710 | MtrunA17_Chr1g0208771 | 25.597 | 293 | 190 | 8 | 31 | 303 | 13 | 297 | 8.33e-28 | 112 |
| Msa0013710 | MtrunA17_Chr8g0390841 | 26.688 | 311 | 201 | 10 | 13 | 304 | 37 | 339 | 3.26e-27 | 110 |
| Msa0013710 | MtrunA17_Chr1g0163231 | 30.282 | 284 | 154 | 9 | 15 | 281 | 9 | 265 | 5.55e-27 | 107 |
| Msa0013710 | MtrunA17_Chr1g0163251 | 29.856 | 278 | 175 | 10 | 24 | 294 | 14 | 278 | 6.25e-27 | 108 |
| Msa0013710 | MtrunA17_Chr7g0233561 | 28.223 | 287 | 184 | 8 | 13 | 281 | 16 | 298 | 8.58e-27 | 107 |
| Msa0013710 | MtrunA17_Chr3g0103171 | 29.197 | 274 | 171 | 8 | 31 | 295 | 6 | 265 | 5.08e-26 | 103 |
| Msa0013710 | MtrunA17_Chr3g0103191 | 29.098 | 244 | 150 | 8 | 13 | 250 | 10 | 236 | 2.62e-25 | 101 |
| Msa0013710 | MtrunA17_Chr1g0163201 | 28.826 | 281 | 171 | 9 | 31 | 289 | 19 | 292 | 5.41e-25 | 103 |
| Msa0013710 | MtrunA17_Chr7g0233541 | 27.444 | 266 | 177 | 5 | 31 | 281 | 2 | 266 | 2.00e-23 | 97.8 |
| Msa0013710 | MtrunA17_Chr7g0233521 | 28.244 | 262 | 163 | 7 | 31 | 281 | 2 | 249 | 2.49e-23 | 97.1 |
| Msa0013710 | MtrunA17_Chr1g0163101 | 34.211 | 152 | 83 | 5 | 1 | 139 | 1 | 148 | 6.80e-21 | 88.2 |
| Msa0013710 | MtrunA17_Chr1g0171611 | 26.740 | 273 | 166 | 7 | 15 | 281 | 9 | 253 | 1.62e-20 | 89.7 |
| Msa0013710 | MtrunA17_Chr3g0103151 | 36.111 | 144 | 82 | 6 | 13 | 149 | 10 | 150 | 1.81e-20 | 86.3 |
| Msa0013710 | MtrunA17_Chr7g0233531 | 25.969 | 258 | 174 | 6 | 31 | 281 | 2 | 249 | 2.27e-20 | 89.0 |
| Msa0013710 | MtrunA17_Chr7g0233571 | 37.391 | 115 | 71 | 1 | 13 | 127 | 8 | 121 | 6.19e-20 | 86.7 |
| Msa0013710 | MtrunA17_Chr1g0154161 | 26.115 | 314 | 176 | 13 | 13 | 300 | 28 | 311 | 3.06e-19 | 86.7 |
| Msa0013710 | MtrunA17_Chr5g0419201 | 34.066 | 182 | 96 | 7 | 1 | 159 | 1 | 181 | 5.55e-19 | 83.2 |
| Msa0013710 | MtrunA17_Chr1g0163121 | 34.884 | 129 | 70 | 4 | 29 | 147 | 9 | 133 | 2.85e-18 | 80.1 |
| Msa0013710 | MtrunA17_Chr1g0154131 | 27.365 | 296 | 167 | 14 | 13 | 281 | 182 | 456 | 3.62e-18 | 84.7 |
| Msa0013710 | MtrunA17_Chr3g0077411 | 23.841 | 302 | 154 | 9 | 2 | 293 | 12 | 247 | 2.31e-16 | 79.3 |
| Msa0013710 | MtrunA17_Chr3g0077411 | 23.569 | 297 | 177 | 10 | 13 | 297 | 260 | 518 | 1.79e-13 | 70.9 |
| Msa0013710 | MtrunA17_Chr6g0476181 | 37.607 | 117 | 65 | 4 | 31 | 144 | 2 | 113 | 2.50e-16 | 75.1 |
| Msa0013710 | MtrunA17_Chr5g0429931 | 28.253 | 269 | 151 | 10 | 31 | 295 | 11 | 241 | 1.03e-15 | 75.5 |
| Msa0013710 | MtrunA17_Chr1g0163191 | 38.235 | 102 | 60 | 2 | 24 | 125 | 14 | 112 | 2.09e-15 | 72.4 |
| Msa0013710 | MtrunA17_Chr1g0163081 | 32.258 | 124 | 70 | 3 | 31 | 144 | 6 | 125 | 3.04e-15 | 71.6 |
| Msa0013710 | MtrunA17_Chr3g0077451 | 25.540 | 278 | 142 | 12 | 29 | 295 | 10 | 233 | 7.40e-15 | 72.8 |
| Msa0013710 | MtrunA17_Chr1g0154191 | 24.471 | 331 | 180 | 15 | 13 | 281 | 20 | 342 | 1.15e-14 | 73.9 |
| Msa0013710 | MtrunA17_Chr1g0162161 | 32.653 | 147 | 85 | 5 | 31 | 169 | 4 | 144 | 1.35e-14 | 70.5 |
| Msa0013710 | MtrunA17_Chr1g0163241 | 32.432 | 111 | 72 | 2 | 31 | 141 | 23 | 130 | 4.14e-14 | 69.3 |
| Msa0013710 | MtrunA17_Chr3g0103201 | 27.897 | 233 | 141 | 9 | 74 | 295 | 4 | 220 | 4.87e-14 | 70.1 |
| Msa0013710 | MtrunA17_Chr3g0077461 | 30.337 | 178 | 111 | 4 | 14 | 179 | 236 | 412 | 5.36e-14 | 72.0 |
| Msa0013710 | MtrunA17_Chr1g0154151 | 27.431 | 288 | 168 | 12 | 30 | 281 | 19 | 301 | 3.85e-13 | 68.9 |
| Msa0013710 | MtrunA17_Chr1g0163141 | 32.673 | 101 | 64 | 2 | 29 | 129 | 9 | 105 | 2.37e-11 | 62.0 |
| Msa0013710 | MtrunA17_Chr3g0077361 | 23.509 | 285 | 154 | 8 | 14 | 293 | 39 | 264 | 7.42e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0013710 | AT3G18990.2 | 25.434 | 346 | 191 | 11 | 15 | 302 | 6 | 342 | 3.13e-21 | 93.2 |
| Msa0013710 | AT3G18990.1 | 25.602 | 332 | 181 | 10 | 15 | 288 | 6 | 329 | 3.45e-21 | 92.4 |
| Msa0013710 | AT3G18960.1 | 36.634 | 101 | 63 | 1 | 15 | 115 | 30 | 129 | 1.64e-15 | 74.3 |
| Msa0013710 | AT3G18960.2 | 36.634 | 101 | 63 | 1 | 15 | 115 | 30 | 129 | 1.96e-15 | 73.9 |
| Msa0013710 | AT4G33280.1 | 23.891 | 293 | 186 | 6 | 28 | 295 | 36 | 316 | 4.15e-15 | 75.1 |
| Msa0013710 | AT4G01580.1 | 34.653 | 101 | 65 | 1 | 15 | 115 | 30 | 129 | 3.26e-14 | 70.5 |
| Msa0013710 | AT1G49475.1 | 35.135 | 111 | 70 | 2 | 15 | 125 | 34 | 142 | 1.60e-13 | 68.6 |
| Msa0013710 | AT3G18960.3 | 37.647 | 85 | 52 | 1 | 31 | 115 | 9 | 92 | 1.56e-11 | 62.4 |
Find 36 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTATCTTTGTCAACAAAA+AGG | 0.196489 | 1_1:+21118502 | None:intergenic |
| GAAGAGAATAATTTGAAATT+TGG | 0.198679 | 1_1:-21118417 | Msa0013710:CDS |
| CTCTATCAATGTATGACTTT+TGG | 0.220204 | 1_1:+21118894 | None:intergenic |
| TTTGGAAACCTTAGAGTAAC+TGG | 0.256715 | 1_1:+21119477 | None:intergenic |
| CTTCATCATCACGGGGTAAA+AGG | 0.262699 | 1_1:-21119206 | Msa0013710:CDS |
| AAGTAGTTGTGATGATATTA+AGG | 0.299219 | 1_1:-21118990 | Msa0013710:CDS |
| AAAATCTTCAGCACCATCTA+TGG | 0.308606 | 1_1:-21119181 | Msa0013710:CDS |
| GTCTTTAATGTGATTGTATT+CGG | 0.330391 | 1_1:-21119318 | Msa0013710:CDS |
| TTCTTACAAACTTCCATAGA+TGG | 0.339692 | 1_1:+21119168 | None:intergenic |
| ATATAATTACCTTCAAAATA+AGG | 0.343429 | 1_1:+21118306 | None:intergenic |
| TAACAAACCCAGTTACTCTA+AGG | 0.363012 | 1_1:-21119485 | Msa0013710:CDS |
| ATTTCAAATTATTCTCTTCA+CGG | 0.368199 | 1_1:+21118421 | None:intergenic |
| GAGAAAATAACAACTTGAAA+TGG | 0.395512 | 1_1:+21118351 | None:intergenic |
| TGTTTCTTAACAAATTCATT+TGG | 0.400949 | 1_1:+21118558 | None:intergenic |
| TGAATTTGTTAAGAAACATA+TGG | 0.414296 | 1_1:-21118553 | Msa0013710:CDS |
| CTTCCCTAGTTTCTCTTGAC+GGG | 0.422598 | 1_1:+21119271 | None:intergenic |
| TCTTCCCTAGTTTCTCTTGA+CGG | 0.433773 | 1_1:+21119270 | None:intergenic |
| TCTAAGGTTTCCAAACATGA+TGG | 0.492653 | 1_1:-21119469 | Msa0013710:CDS |
| TGAGAACCCTTCATCATCAC+GGG | 0.497990 | 1_1:-21119214 | Msa0013710:CDS |
| TTTCTCTTTGGAAAAGGACA+TGG | 0.524275 | 1_1:-21118334 | Msa0013710:CDS |
| TAAGAAACATATGGACATGA+TGG | 0.532545 | 1_1:-21118544 | Msa0013710:CDS |
| AATACCCGTCAAGAGAAACT+AGG | 0.533719 | 1_1:-21119275 | Msa0013710:CDS |
| ATACATTGATAGAGATCGCT+TGG | 0.539899 | 1_1:-21118885 | Msa0013710:intron |
| TTTGTGAAAAGGTATTGGAA+AGG | 0.553882 | 1_1:-21119510 | Msa0013710:CDS |
| AATCTGCACTAACTTGTGGT+TGG | 0.573287 | 1_1:-21118452 | Msa0013710:CDS |
| TTGAGAACCCTTCATCATCA+CGG | 0.579054 | 1_1:-21119215 | Msa0013710:CDS |
| ATACCCGTCAAGAGAAACTA+GGG | 0.582374 | 1_1:-21119274 | Msa0013710:CDS |
| AAACAATCTGCACTAACTTG+TGG | 0.589005 | 1_1:-21118456 | Msa0013710:CDS |
| GAACATGGTCATCAGAGTAA+TGG | 0.594006 | 1_1:-21120000 | Msa0013710:CDS |
| AAACATATGGACATGATGGA+AGG | 0.599445 | 1_1:-21118540 | Msa0013710:CDS |
| ACCATGTTCTTGAGAAGACA+TGG | 0.602247 | 1_1:+21120014 | None:intergenic |
| GTGATTGTATTCGGTAGATG+CGG | 0.604317 | 1_1:-21119309 | Msa0013710:CDS |
| TTGGAAACCTTAGAGTAACT+GGG | 0.606122 | 1_1:+21119478 | None:intergenic |
| ACCATGTCTTCTCAAGAACA+TGG | 0.657917 | 1_1:-21120015 | Msa0013710:CDS |
| AAGCGTGAGCATGTGAACAA+TGG | 0.705898 | 1_1:-21119111 | Msa0013710:intron |
| GAGAACCCTTCATCATCACG+GGG | 0.761785 | 1_1:-21119213 | Msa0013710:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATGATTTATGAAAAATTTA+TGG | - | chr1_1:21119946-21119965 | Msa0013710:intron | 10.0% |
| !! | TATGATTTATGAAAAATTTA+TGG | - | chr1_1:21119946-21119965 | Msa0013710:intron | 10.0% |
| !!! | TTTTTGCTACTAATTTTTTT+TGG | - | chr1_1:21119181-21119200 | Msa0013710:CDS | 15.0% |
| !! | ATATAATTACCTTCAAAATA+AGG | + | chr1_1:21119914-21119933 | None:intergenic | 15.0% |
| !!! | TATTTTGAAGGTAATTATAT+TGG | - | chr1_1:21119914-21119933 | Msa0013710:intron | 15.0% |
| !!! | TTTTTGCTACTAATTTTTTT+TGG | - | chr1_1:21119181-21119200 | Msa0013710:CDS | 15.0% |
| !! | ATATAATTACCTTCAAAATA+AGG | + | chr1_1:21119914-21119933 | None:intergenic | 15.0% |
| !!! | TATTTTGAAGGTAATTATAT+TGG | - | chr1_1:21119914-21119933 | Msa0013710:intron | 15.0% |
| !! | GAAAAACAATTTCTTCATTA+GGG | + | chr1_1:21118438-21118457 | None:intergenic | 20.0% |
| !! | AGAAAAACAATTTCTTCATT+AGG | + | chr1_1:21118439-21118458 | None:intergenic | 20.0% |
| !! | AAAATGTGATCTTATGATAT+TGG | - | chr1_1:21118486-21118505 | Msa0013710:CDS | 20.0% |
| !! | AATAGTGATTGTTCAAATAT+AGG | - | chr1_1:21118530-21118549 | Msa0013710:CDS | 20.0% |
| !!! | TTTGAATGAATCACAATTTT+TGG | - | chr1_1:21118853-21118872 | Msa0013710:intron | 20.0% |
| !!! | TGAATTCTTATTTTTTTAGC+AGG | - | chr1_1:21119204-21119223 | Msa0013710:CDS | 20.0% |
| !! | CCAATTATGGTATAATAATT+TGG | + | chr1_1:21119460-21119479 | None:intergenic | 20.0% |
| !! | CCAAATTATTATACCATAAT+TGG | - | chr1_1:21119457-21119476 | Msa0013710:CDS | 20.0% |
| !! | AACTATATGTGTGTATTTAT+AGG | - | chr1_1:21119631-21119650 | Msa0013710:intron | 20.0% |
| !! | TGTTTCTTAACAAATTCATT+TGG | + | chr1_1:21119662-21119681 | None:intergenic | 20.0% |
| !!! | TGAATTTGTTAAGAAACATA+TGG | - | chr1_1:21119664-21119683 | Msa0013710:intron | 20.0% |
| !! | TTTATCTTTGTCAACAAAAA+GGG | + | chr1_1:21119717-21119736 | None:intergenic | 20.0% |
| !! | ATTTATCTTTGTCAACAAAA+AGG | + | chr1_1:21119718-21119737 | None:intergenic | 20.0% |
| !!! | TTTTTGTTGACAAAGATAAA+TGG | - | chr1_1:21119717-21119736 | Msa0013710:intron | 20.0% |
| !! | ATTTCAAATTATTCTCTTCA+CGG | + | chr1_1:21119799-21119818 | None:intergenic | 20.0% |
| !!! | GAAGAGAATAATTTGAAATT+TGG | - | chr1_1:21119800-21119819 | Msa0013710:intron | 20.0% |
| !! | GAAAAACAATTTCTTCATTA+GGG | + | chr1_1:21118438-21118457 | None:intergenic | 20.0% |
| !! | AGAAAAACAATTTCTTCATT+AGG | + | chr1_1:21118439-21118458 | None:intergenic | 20.0% |
| !! | AAAATGTGATCTTATGATAT+TGG | - | chr1_1:21118486-21118505 | Msa0013710:CDS | 20.0% |
| !! | AATAGTGATTGTTCAAATAT+AGG | - | chr1_1:21118530-21118549 | Msa0013710:CDS | 20.0% |
| !!! | TTTGAATGAATCACAATTTT+TGG | - | chr1_1:21118853-21118872 | Msa0013710:intron | 20.0% |
| !!! | TGAATTCTTATTTTTTTAGC+AGG | - | chr1_1:21119204-21119223 | Msa0013710:CDS | 20.0% |
| !! | CCAATTATGGTATAATAATT+TGG | + | chr1_1:21119460-21119479 | None:intergenic | 20.0% |
| !! | CCAAATTATTATACCATAAT+TGG | - | chr1_1:21119457-21119476 | Msa0013710:CDS | 20.0% |
| !! | AACTATATGTGTGTATTTAT+AGG | - | chr1_1:21119631-21119650 | Msa0013710:intron | 20.0% |
| !! | TGTTTCTTAACAAATTCATT+TGG | + | chr1_1:21119662-21119681 | None:intergenic | 20.0% |
| !!! | TGAATTTGTTAAGAAACATA+TGG | - | chr1_1:21119664-21119683 | Msa0013710:intron | 20.0% |
| !! | TTTATCTTTGTCAACAAAAA+GGG | + | chr1_1:21119717-21119736 | None:intergenic | 20.0% |
| !! | ATTTATCTTTGTCAACAAAA+AGG | + | chr1_1:21119718-21119737 | None:intergenic | 20.0% |
| !!! | TTTTTGTTGACAAAGATAAA+TGG | - | chr1_1:21119717-21119736 | Msa0013710:intron | 20.0% |
| !! | ATTTCAAATTATTCTCTTCA+CGG | + | chr1_1:21119799-21119818 | None:intergenic | 20.0% |
| !!! | GAAGAGAATAATTTGAAATT+TGG | - | chr1_1:21119800-21119819 | Msa0013710:intron | 20.0% |
| ! | TGCATATTGTGAAAAATCAA+GGG | + | chr1_1:21118317-21118336 | None:intergenic | 25.0% |
| ! | TTGCATATTGTGAAAAATCA+AGG | + | chr1_1:21118318-21118337 | None:intergenic | 25.0% |
| ! | CAAATATGCATTGCAAAATT+TGG | - | chr1_1:21118335-21118354 | Msa0013710:CDS | 25.0% |
| !! | TACCTTTTCACAAAAGTTAT+GGG | + | chr1_1:21118701-21118720 | None:intergenic | 25.0% |
| !! | ATACCTTTTCACAAAAGTTA+TGG | + | chr1_1:21118702-21118721 | None:intergenic | 25.0% |
| !!! | TAACTTTTGTGAAAAGGTAT+TGG | - | chr1_1:21118702-21118721 | Msa0013710:intron | 25.0% |
| !!! | TGATGGAAAAGAAAGTTTTT+TGG | - | chr1_1:21118765-21118784 | Msa0013710:intron | 25.0% |
| !!! | GATGGAAAAGAAAGTTTTTT+GGG | - | chr1_1:21118766-21118785 | Msa0013710:intron | 25.0% |
| !! | AATGAAGTTATGTTTTGCAA+TGG | - | chr1_1:21118803-21118822 | Msa0013710:intron | 25.0% |
| ! | GTCTTTAATGTGATTGTATT+CGG | - | chr1_1:21118899-21118918 | Msa0013710:CDS | 25.0% |
| ! | AAGTAGTTGTGATGATATTA+AGG | - | chr1_1:21119227-21119246 | Msa0013710:CDS | 25.0% |
| !!! | CAAATTTTTTCTTCACTTTC+TGG | + | chr1_1:21119272-21119291 | None:intergenic | 25.0% |
| ! | GAAAAAATTTGACTCTGATA+AGG | - | chr1_1:21119281-21119300 | Msa0013710:CDS | 25.0% |
| ! | AATATAGCAAAGTCCAATTA+TGG | + | chr1_1:21119473-21119492 | None:intergenic | 25.0% |
| !!! | CTTTAAAAGTACCTACATAA+TGG | - | chr1_1:21119507-21119526 | Msa0013710:CDS | 25.0% |
| ! | GAGAAAATAACAACTTGAAA+TGG | + | chr1_1:21119869-21119888 | None:intergenic | 25.0% |
| !!! | TCAAGTTGTTATTTTCTCTT+TGG | - | chr1_1:21119871-21119890 | Msa0013710:intron | 25.0% |
| !!! | TGTTATTTTCTCTTTGGAAA+AGG | - | chr1_1:21119877-21119896 | Msa0013710:intron | 25.0% |
| ! | CAATATAGTAATTCATGTGT+TGG | - | chr1_1:21119991-21120010 | Msa0013710:CDS | 25.0% |
| ! | TGCATATTGTGAAAAATCAA+GGG | + | chr1_1:21118317-21118336 | None:intergenic | 25.0% |
| ! | TTGCATATTGTGAAAAATCA+AGG | + | chr1_1:21118318-21118337 | None:intergenic | 25.0% |
| ! | CAAATATGCATTGCAAAATT+TGG | - | chr1_1:21118335-21118354 | Msa0013710:CDS | 25.0% |
| !! | TACCTTTTCACAAAAGTTAT+GGG | + | chr1_1:21118701-21118720 | None:intergenic | 25.0% |
| !! | ATACCTTTTCACAAAAGTTA+TGG | + | chr1_1:21118702-21118721 | None:intergenic | 25.0% |
| !!! | TAACTTTTGTGAAAAGGTAT+TGG | - | chr1_1:21118702-21118721 | Msa0013710:intron | 25.0% |
| !!! | TGATGGAAAAGAAAGTTTTT+TGG | - | chr1_1:21118765-21118784 | Msa0013710:intron | 25.0% |
| !!! | GATGGAAAAGAAAGTTTTTT+GGG | - | chr1_1:21118766-21118785 | Msa0013710:intron | 25.0% |
| !! | AATGAAGTTATGTTTTGCAA+TGG | - | chr1_1:21118803-21118822 | Msa0013710:intron | 25.0% |
| ! | GTCTTTAATGTGATTGTATT+CGG | - | chr1_1:21118899-21118918 | Msa0013710:CDS | 25.0% |
| ! | AAGTAGTTGTGATGATATTA+AGG | - | chr1_1:21119227-21119246 | Msa0013710:CDS | 25.0% |
| !!! | CAAATTTTTTCTTCACTTTC+TGG | + | chr1_1:21119272-21119291 | None:intergenic | 25.0% |
| ! | GAAAAAATTTGACTCTGATA+AGG | - | chr1_1:21119281-21119300 | Msa0013710:CDS | 25.0% |
| ! | AATATAGCAAAGTCCAATTA+TGG | + | chr1_1:21119473-21119492 | None:intergenic | 25.0% |
| !!! | CTTTAAAAGTACCTACATAA+TGG | - | chr1_1:21119507-21119526 | Msa0013710:CDS | 25.0% |
| ! | GAGAAAATAACAACTTGAAA+TGG | + | chr1_1:21119869-21119888 | None:intergenic | 25.0% |
| !!! | TCAAGTTGTTATTTTCTCTT+TGG | - | chr1_1:21119871-21119890 | Msa0013710:intron | 25.0% |
| !!! | TGTTATTTTCTCTTTGGAAA+AGG | - | chr1_1:21119877-21119896 | Msa0013710:intron | 25.0% |
| ! | CAATATAGTAATTCATGTGT+TGG | - | chr1_1:21119991-21120010 | Msa0013710:CDS | 25.0% |
| !!! | TAATGGTGTCCACTTTTTTA+AGG | - | chr1_1:21118234-21118253 | Msa0013710:intron | 30.0% |
| GACGAATAACCTTAAAAAAG+TGG | + | chr1_1:21118246-21118265 | None:intergenic | 30.0% | |
| ! | TACCAGTTTTTCTTCTTGAA+GGG | + | chr1_1:21118275-21118294 | None:intergenic | 30.0% |
| ! | TTACCAGTTTTTCTTCTTGA+AGG | + | chr1_1:21118276-21118295 | None:intergenic | 30.0% |
| AGTGATTGTTCAAATATAGG+TGG | - | chr1_1:21118533-21118552 | Msa0013710:CDS | 30.0% | |
| !! | TTTGTGAAAAGGTATTGGAA+AGG | - | chr1_1:21118707-21118726 | Msa0013710:intron | 30.0% |
| ! | ACTTTCTTTTCCATCATGTT+TGG | + | chr1_1:21118761-21118780 | None:intergenic | 30.0% |
| ! | AAGTTATGTTTTGCAATGGT+TGG | - | chr1_1:21118807-21118826 | Msa0013710:intron | 30.0% |
| TTCTTACAAACTTCCATAGA+TGG | + | chr1_1:21119052-21119071 | None:intergenic | 30.0% | |
| ! | CTCTATCAATGTATGACTTT+TGG | + | chr1_1:21119326-21119345 | None:intergenic | 30.0% |
| TAAGAAACATATGGACATGA+TGG | - | chr1_1:21119673-21119692 | Msa0013710:intron | 30.0% | |
| !! | TGTGTTTTTGTGCTAAAGAA+AGG | - | chr1_1:21119830-21119849 | Msa0013710:intron | 30.0% |
| !!! | ATGGAAACTCCTTATTTTGA+AGG | - | chr1_1:21119902-21119921 | Msa0013710:intron | 30.0% |
| !!! | TAATGGTGTCCACTTTTTTA+AGG | - | chr1_1:21118234-21118253 | Msa0013710:intron | 30.0% |
| GACGAATAACCTTAAAAAAG+TGG | + | chr1_1:21118246-21118265 | None:intergenic | 30.0% | |
| ! | TACCAGTTTTTCTTCTTGAA+GGG | + | chr1_1:21118275-21118294 | None:intergenic | 30.0% |
| ! | TTACCAGTTTTTCTTCTTGA+AGG | + | chr1_1:21118276-21118295 | None:intergenic | 30.0% |
| AGTGATTGTTCAAATATAGG+TGG | - | chr1_1:21118533-21118552 | Msa0013710:CDS | 30.0% | |
| !! | TTTGTGAAAAGGTATTGGAA+AGG | - | chr1_1:21118707-21118726 | Msa0013710:intron | 30.0% |
| ! | ACTTTCTTTTCCATCATGTT+TGG | + | chr1_1:21118761-21118780 | None:intergenic | 30.0% |
| ! | AAGTTATGTTTTGCAATGGT+TGG | - | chr1_1:21118807-21118826 | Msa0013710:intron | 30.0% |
| TTCTTACAAACTTCCATAGA+TGG | + | chr1_1:21119052-21119071 | None:intergenic | 30.0% | |
| ! | CTCTATCAATGTATGACTTT+TGG | + | chr1_1:21119326-21119345 | None:intergenic | 30.0% |
| TAAGAAACATATGGACATGA+TGG | - | chr1_1:21119673-21119692 | Msa0013710:intron | 30.0% | |
| !! | TGTGTTTTTGTGCTAAAGAA+AGG | - | chr1_1:21119830-21119849 | Msa0013710:intron | 30.0% |
| !!! | ATGGAAACTCCTTATTTTGA+AGG | - | chr1_1:21119902-21119921 | Msa0013710:intron | 30.0% |
| TACCCTTCAAGAAGAAAAAC+TGG | - | chr1_1:21118270-21118289 | Msa0013710:intron | 35.0% | |
| ! | TGCCCATAACTTTTGTGAAA+AGG | - | chr1_1:21118696-21118715 | Msa0013710:intron | 35.0% |
| TAACAAACCCAGTTACTCTA+AGG | - | chr1_1:21118732-21118751 | Msa0013710:intron | 35.0% | |
| TTGGAAACCTTAGAGTAACT+GGG | + | chr1_1:21118742-21118761 | None:intergenic | 35.0% | |
| TTTGGAAACCTTAGAGTAAC+TGG | + | chr1_1:21118743-21118762 | None:intergenic | 35.0% | |
| ! | TCTAAGGTTTCCAAACATGA+TGG | - | chr1_1:21118748-21118767 | Msa0013710:intron | 35.0% |
| AAAATCTTCAGCACCATCTA+TGG | - | chr1_1:21119036-21119055 | Msa0013710:intron | 35.0% | |
| ATACATTGATAGAGATCGCT+TGG | - | chr1_1:21119332-21119351 | Msa0013710:CDS | 35.0% | |
| CCAATCACAATCCATTATGT+AGG | + | chr1_1:21119521-21119540 | None:intergenic | 35.0% | |
| !! | CCTACATAATGGATTGTGAT+TGG | - | chr1_1:21119518-21119537 | Msa0013710:CDS | 35.0% |
| ! | AAACATATGGACATGATGGA+AGG | - | chr1_1:21119677-21119696 | Msa0013710:intron | 35.0% |
| AAACAATCTGCACTAACTTG+TGG | - | chr1_1:21119761-21119780 | Msa0013710:intron | 35.0% | |
| ! | TTTCTCTTTGGAAAAGGACA+TGG | - | chr1_1:21119883-21119902 | Msa0013710:intron | 35.0% |
| TACCCTTCAAGAAGAAAAAC+TGG | - | chr1_1:21118270-21118289 | Msa0013710:intron | 35.0% | |
| ! | TGCCCATAACTTTTGTGAAA+AGG | - | chr1_1:21118696-21118715 | Msa0013710:intron | 35.0% |
| TAACAAACCCAGTTACTCTA+AGG | - | chr1_1:21118732-21118751 | Msa0013710:intron | 35.0% | |
| TTGGAAACCTTAGAGTAACT+GGG | + | chr1_1:21118742-21118761 | None:intergenic | 35.0% | |
| TTTGGAAACCTTAGAGTAAC+TGG | + | chr1_1:21118743-21118762 | None:intergenic | 35.0% | |
| ! | TCTAAGGTTTCCAAACATGA+TGG | - | chr1_1:21118748-21118767 | Msa0013710:intron | 35.0% |
| AAAATCTTCAGCACCATCTA+TGG | - | chr1_1:21119036-21119055 | Msa0013710:intron | 35.0% | |
| ATACATTGATAGAGATCGCT+TGG | - | chr1_1:21119332-21119351 | Msa0013710:CDS | 35.0% | |
| CCAATCACAATCCATTATGT+AGG | + | chr1_1:21119521-21119540 | None:intergenic | 35.0% | |
| !! | CCTACATAATGGATTGTGAT+TGG | - | chr1_1:21119518-21119537 | Msa0013710:CDS | 35.0% |
| ! | AAACATATGGACATGATGGA+AGG | - | chr1_1:21119677-21119696 | Msa0013710:intron | 35.0% |
| AAACAATCTGCACTAACTTG+TGG | - | chr1_1:21119761-21119780 | Msa0013710:intron | 35.0% | |
| ! | TTTCTCTTTGGAAAAGGACA+TGG | - | chr1_1:21119883-21119902 | Msa0013710:intron | 35.0% |
| GAACATGGTCATCAGAGTAA+TGG | - | chr1_1:21118217-21118236 | Msa0013710:intron | 40.0% | |
| GTGATTGTATTCGGTAGATG+CGG | - | chr1_1:21118908-21118927 | Msa0013710:CDS | 40.0% | |
| AATACCCGTCAAGAGAAACT+AGG | - | chr1_1:21118942-21118961 | Msa0013710:CDS | 40.0% | |
| ATACCCGTCAAGAGAAACTA+GGG | - | chr1_1:21118943-21118962 | Msa0013710:CDS | 40.0% | |
| TCTTCCCTAGTTTCTCTTGA+CGG | + | chr1_1:21118950-21118969 | None:intergenic | 40.0% | |
| TTGAGAACCCTTCATCATCA+CGG | - | chr1_1:21119002-21119021 | Msa0013710:intron | 40.0% | |
| !! | TTTTACCCCGTGATGATGAA+GGG | + | chr1_1:21119012-21119031 | None:intergenic | 40.0% |
| ! | AATCTGCACTAACTTGTGGT+TGG | - | chr1_1:21119765-21119784 | Msa0013710:intron | 40.0% |
| TTCATGTGTTGGACTATTGC+AGG | - | chr1_1:21120002-21120021 | Msa0013710:CDS | 40.0% | |
| TCATGTGTTGGACTATTGCA+GGG | - | chr1_1:21120003-21120022 | Msa0013710:CDS | 40.0% | |
| GAACATGGTCATCAGAGTAA+TGG | - | chr1_1:21118217-21118236 | Msa0013710:intron | 40.0% | |
| GTGATTGTATTCGGTAGATG+CGG | - | chr1_1:21118908-21118927 | Msa0013710:CDS | 40.0% | |
| AATACCCGTCAAGAGAAACT+AGG | - | chr1_1:21118942-21118961 | Msa0013710:CDS | 40.0% | |
| ATACCCGTCAAGAGAAACTA+GGG | - | chr1_1:21118943-21118962 | Msa0013710:CDS | 40.0% | |
| TCTTCCCTAGTTTCTCTTGA+CGG | + | chr1_1:21118950-21118969 | None:intergenic | 40.0% | |
| TTGAGAACCCTTCATCATCA+CGG | - | chr1_1:21119002-21119021 | Msa0013710:intron | 40.0% | |
| !! | TTTTACCCCGTGATGATGAA+GGG | + | chr1_1:21119012-21119031 | None:intergenic | 40.0% |
| ! | AATCTGCACTAACTTGTGGT+TGG | - | chr1_1:21119765-21119784 | Msa0013710:intron | 40.0% |
| TTCATGTGTTGGACTATTGC+AGG | - | chr1_1:21120002-21120021 | Msa0013710:CDS | 40.0% | |
| TCATGTGTTGGACTATTGCA+GGG | - | chr1_1:21120003-21120022 | Msa0013710:CDS | 40.0% | |
| ! | CATCCAACAAAGGCTAGCTA+GGG | + | chr1_1:21118412-21118431 | None:intergenic | 45.0% |
| ATTAGGGCTGCATCCAACAA+AGG | + | chr1_1:21118422-21118441 | None:intergenic | 45.0% | |
| CTTCCCTAGTTTCTCTTGAC+GGG | + | chr1_1:21118949-21118968 | None:intergenic | 45.0% | |
| TGAGAACCCTTCATCATCAC+GGG | - | chr1_1:21119003-21119022 | Msa0013710:intron | 45.0% | |
| !! | CTTTTACCCCGTGATGATGA+AGG | + | chr1_1:21119013-21119032 | None:intergenic | 45.0% |
| CTTCATCATCACGGGGTAAA+AGG | - | chr1_1:21119011-21119030 | Msa0013710:intron | 45.0% | |
| AAGCGTGAGCATGTGAACAA+TGG | - | chr1_1:21119106-21119125 | Msa0013710:intron | 45.0% | |
| GTGAGCATGTGAACAATGGT+TGG | - | chr1_1:21119110-21119129 | Msa0013710:intron | 45.0% | |
| ! | CATCCAACAAAGGCTAGCTA+GGG | + | chr1_1:21118412-21118431 | None:intergenic | 45.0% |
| ATTAGGGCTGCATCCAACAA+AGG | + | chr1_1:21118422-21118441 | None:intergenic | 45.0% | |
| CTTCCCTAGTTTCTCTTGAC+GGG | + | chr1_1:21118949-21118968 | None:intergenic | 45.0% | |
| TGAGAACCCTTCATCATCAC+GGG | - | chr1_1:21119003-21119022 | Msa0013710:intron | 45.0% | |
| !! | CTTTTACCCCGTGATGATGA+AGG | + | chr1_1:21119013-21119032 | None:intergenic | 45.0% |
| CTTCATCATCACGGGGTAAA+AGG | - | chr1_1:21119011-21119030 | Msa0013710:intron | 45.0% | |
| AAGCGTGAGCATGTGAACAA+TGG | - | chr1_1:21119106-21119125 | Msa0013710:intron | 45.0% | |
| GTGAGCATGTGAACAATGGT+TGG | - | chr1_1:21119110-21119129 | Msa0013710:intron | 45.0% | |
| !! | CATCCCTAGCTAGCCTTTGT+TGG | - | chr1_1:21118406-21118425 | Msa0013710:CDS | 50.0% |
| ! | GCATCCAACAAAGGCTAGCT+AGG | + | chr1_1:21118413-21118432 | None:intergenic | 50.0% |
| GAGAACCCTTCATCATCACG+GGG | - | chr1_1:21119004-21119023 | Msa0013710:intron | 50.0% | |
| GTGTTGGACTATTGCAGGGT+TGG | - | chr1_1:21120007-21120026 | Msa0013710:CDS | 50.0% | |
| !! | CATCCCTAGCTAGCCTTTGT+TGG | - | chr1_1:21118406-21118425 | Msa0013710:CDS | 50.0% |
| ! | GCATCCAACAAAGGCTAGCT+AGG | + | chr1_1:21118413-21118432 | None:intergenic | 50.0% |
| GAGAACCCTTCATCATCACG+GGG | - | chr1_1:21119004-21119023 | Msa0013710:intron | 50.0% | |
| GTGTTGGACTATTGCAGGGT+TGG | - | chr1_1:21120007-21120026 | Msa0013710:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 21118205 | 21120034 | 21118205 | ID=Msa0013710;Name=Msa0013710 |
| chr1_1 | mRNA | 21118205 | 21120034 | 21118205 | ID=Msa0013710-mRNA-1;Parent=Msa0013710;Name=Msa0013710-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0|0|0.6|1|1|5|0|310 |
| chr1_1 | exon | 21119948 | 21120034 | 21119948 | ID=Msa0013710-mRNA-1:exon:7545;Parent=Msa0013710-mRNA-1 |
| chr1_1 | exon | 21119112 | 21119547 | 21119112 | ID=Msa0013710-mRNA-1:exon:7544;Parent=Msa0013710-mRNA-1 |
| chr1_1 | exon | 21118886 | 21119013 | 21118886 | ID=Msa0013710-mRNA-1:exon:7543;Parent=Msa0013710-mRNA-1 |
| chr1_1 | exon | 21118316 | 21118586 | 21118316 | ID=Msa0013710-mRNA-1:exon:7542;Parent=Msa0013710-mRNA-1 |
| chr1_1 | exon | 21118205 | 21118215 | 21118205 | ID=Msa0013710-mRNA-1:exon:7541;Parent=Msa0013710-mRNA-1 |
| chr1_1 | CDS | 21119948 | 21120034 | 21119948 | ID=Msa0013710-mRNA-1:cds;Parent=Msa0013710-mRNA-1 |
| chr1_1 | CDS | 21119112 | 21119547 | 21119112 | ID=Msa0013710-mRNA-1:cds;Parent=Msa0013710-mRNA-1 |
| chr1_1 | CDS | 21118886 | 21119013 | 21118886 | ID=Msa0013710-mRNA-1:cds;Parent=Msa0013710-mRNA-1 |
| chr1_1 | CDS | 21118316 | 21118586 | 21118316 | ID=Msa0013710-mRNA-1:cds;Parent=Msa0013710-mRNA-1 |
| chr1_1 | CDS | 21118205 | 21118215 | 21118205 | ID=Msa0013710-mRNA-1:cds;Parent=Msa0013710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
