Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0013720 | A0A072VG97 | 88.702 | 416 | 45 | 2 | 1 | 416 | 1 | 414 | 0.0 | 761 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0013720 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0013720 | MtrunA17_Chr1g0163231 | 86.942 | 291 | 36 | 2 | 1 | 291 | 1 | 289 | 0.0 | 525 |
| Msa0013720 | MtrunA17_Chr1g0171611 | 84.068 | 295 | 29 | 2 | 1 | 291 | 1 | 281 | 2.80e-174 | 488 |
| Msa0013720 | MtrunA17_Chr1g0163181 | 44.244 | 443 | 199 | 12 | 1 | 410 | 1 | 428 | 1.16e-113 | 340 |
| Msa0013720 | MtrunA17_Chr1g0163201 | 45.966 | 409 | 164 | 12 | 24 | 410 | 18 | 391 | 4.87e-106 | 319 |
| Msa0013720 | MtrunA17_Chr1g0163261 | 55.705 | 298 | 104 | 8 | 1 | 283 | 1 | 285 | 1.04e-101 | 304 |
| Msa0013720 | MtrunA17_Chr1g0163251 | 48.318 | 327 | 140 | 9 | 1 | 308 | 1 | 317 | 1.28e-93 | 287 |
| Msa0013720 | MtrunA17_Chr1g0163111 | 42.231 | 251 | 119 | 9 | 162 | 410 | 1 | 227 | 2.93e-51 | 172 |
| Msa0013720 | MtrunA17_Chr1g0163151 | 39.841 | 251 | 118 | 7 | 162 | 410 | 1 | 220 | 6.68e-50 | 168 |
| Msa0013720 | MtrunA17_Chr1g0163241 | 58.594 | 128 | 49 | 2 | 24 | 148 | 22 | 148 | 6.02e-44 | 150 |
| Msa0013720 | MtrunA17_Chr1g0162151 | 40.310 | 258 | 105 | 9 | 162 | 416 | 1 | 212 | 4.90e-43 | 150 |
| Msa0013720 | MtrunA17_Chr1g0163191 | 54.472 | 123 | 52 | 1 | 1 | 123 | 1 | 119 | 5.65e-40 | 140 |
| Msa0013720 | MtrunA17_Chr6g0476171 | 35.206 | 267 | 137 | 6 | 155 | 410 | 3 | 244 | 2.30e-36 | 133 |
| Msa0013720 | MtrunA17_Chr7g0233561 | 31.650 | 297 | 179 | 9 | 6 | 279 | 15 | 310 | 1.71e-34 | 130 |
| Msa0013720 | MtrunA17_Chr3g0131891 | 31.959 | 291 | 176 | 11 | 6 | 279 | 16 | 301 | 2.64e-33 | 127 |
| Msa0013720 | MtrunA17_Chr1g0162161 | 43.537 | 147 | 63 | 5 | 25 | 157 | 4 | 144 | 8.20e-30 | 113 |
| Msa0013720 | MtrunA17_Chr8g0390841 | 22.817 | 504 | 279 | 14 | 2 | 412 | 32 | 518 | 2.63e-29 | 119 |
| Msa0013720 | MtrunA17_Chr1g0163131 | 30.272 | 294 | 178 | 8 | 9 | 280 | 18 | 306 | 5.19e-29 | 115 |
| Msa0013720 | MtrunA17_Chr1g0163131 | 41.447 | 152 | 80 | 4 | 268 | 410 | 154 | 305 | 3.67e-24 | 102 |
| Msa0013720 | MtrunA17_Chr1g0163101 | 38.462 | 156 | 88 | 3 | 9 | 157 | 17 | 171 | 1.97e-28 | 110 |
| Msa0013720 | MtrunA17_Chr7g0233531 | 30.072 | 276 | 156 | 9 | 25 | 279 | 2 | 261 | 1.96e-27 | 110 |
| Msa0013720 | MtrunA17_Chr1g0163091 | 48.000 | 125 | 58 | 4 | 162 | 283 | 1 | 121 | 2.66e-27 | 106 |
| Msa0013720 | MtrunA17_Chr1g0208771 | 25.161 | 465 | 254 | 18 | 24 | 412 | 12 | 458 | 1.16e-26 | 111 |
| Msa0013720 | MtrunA17_Chr1g0163121 | 40.741 | 135 | 77 | 2 | 23 | 157 | 9 | 140 | 9.24e-26 | 101 |
| Msa0013720 | MtrunA17_Chr7g0233521 | 28.777 | 278 | 157 | 11 | 25 | 279 | 2 | 261 | 2.31e-24 | 101 |
| Msa0013720 | MtrunA17_Chr7g0233541 | 27.397 | 292 | 160 | 8 | 25 | 279 | 2 | 278 | 6.67e-23 | 98.2 |
| Msa0013720 | MtrunA17_Chr1g0163141 | 34.969 | 163 | 77 | 5 | 23 | 157 | 9 | 170 | 1.03e-22 | 94.7 |
| Msa0013720 | MtrunA17_Chr4g0067431 | 26.645 | 304 | 182 | 11 | 9 | 279 | 15 | 310 | 1.94e-22 | 97.4 |
| Msa0013720 | MtrunA17_Chr1g0163081 | 39.855 | 138 | 76 | 4 | 25 | 157 | 6 | 141 | 5.46e-22 | 91.7 |
| Msa0013720 | MtrunA17_Chr7g0233571 | 31.250 | 176 | 112 | 3 | 6 | 177 | 7 | 177 | 8.70e-22 | 93.2 |
| Msa0013720 | MtrunA17_Chr5g0419201 | 35.088 | 171 | 105 | 3 | 3 | 167 | 10 | 180 | 1.07e-21 | 92.0 |
| Msa0013720 | MtrunA17_Chr1g0163221 | 25.478 | 314 | 198 | 10 | 9 | 297 | 11 | 313 | 1.88e-21 | 95.1 |
| Msa0013720 | MtrunA17_Chr6g0476181 | 36.364 | 154 | 76 | 4 | 25 | 157 | 2 | 154 | 3.09e-21 | 90.1 |
| Msa0013720 | MtrunA17_Chr3g0103181 | 25.087 | 287 | 187 | 9 | 5 | 279 | 8 | 278 | 2.64e-20 | 90.5 |
| Msa0013720 | MtrunA17_Chr3g0103171 | 26.007 | 273 | 172 | 8 | 24 | 279 | 5 | 264 | 1.04e-19 | 88.2 |
| Msa0013720 | MtrunA17_Chr3g0103151 | 33.103 | 145 | 87 | 3 | 5 | 147 | 8 | 144 | 9.82e-19 | 82.8 |
| Msa0013720 | MtrunA17_Chr6g0467351 | 40.678 | 118 | 63 | 3 | 9 | 123 | 15 | 128 | 1.89e-18 | 84.0 |
| Msa0013720 | MtrunA17_Chr1g0163071 | 25.253 | 297 | 167 | 10 | 25 | 279 | 2 | 285 | 2.49e-18 | 85.1 |
| Msa0013720 | MtrunA17_Chr1g0163161 | 37.121 | 132 | 69 | 5 | 37 | 157 | 1 | 129 | 3.85e-17 | 77.8 |
| Msa0013720 | MtrunA17_Chr3g0103191 | 34.646 | 127 | 72 | 3 | 6 | 130 | 9 | 126 | 5.03e-17 | 80.5 |
| Msa0013720 | MtrunA17_Chr1g0163061 | 38.000 | 100 | 59 | 2 | 9 | 105 | 15 | 114 | 5.90e-14 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0013720 | AT3G18990.1 | 22.063 | 349 | 193 | 10 | 6 | 285 | 2 | 340 | 2.72e-11 | 65.1 |
| Msa0013720 | AT3G18990.2 | 22.222 | 342 | 187 | 10 | 6 | 278 | 2 | 333 | 2.86e-11 | 65.1 |
| Msa0013720 | AT1G49475.1 | 33.333 | 120 | 71 | 5 | 7 | 123 | 32 | 145 | 3.03e-11 | 62.8 |
Find 65 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTTGCAGATGACCCTTTA+AGG | 0.106528 | 1_1:+21162782 | None:intergenic |
| GTGCTCAAAAGGAAATATTT+TGG | 0.171981 | 1_1:-21163581 | Msa0013720:CDS |
| TCTATTGTGATGATAATATT+TGG | 0.191054 | 1_1:-21162440 | Msa0013720:CDS |
| TGCAGGTTGGCATAAATTTA+AGG | 0.202920 | 1_1:-21161373 | Msa0013720:CDS |
| TTACGCTCATGGCTATATTT+TGG | 0.211055 | 1_1:-21163032 | Msa0013720:intron |
| ATATTTGGTTTAAGAGAAAT+TGG | 0.232188 | 1_1:-21163542 | Msa0013720:CDS |
| AGAAATTTGTGGAGAAATAT+TGG | 0.241294 | 1_1:-21163644 | Msa0013720:CDS |
| AACAATCTTCAAGAACTCTT+TGG | 0.242863 | 1_1:+21163897 | None:intergenic |
| TTTGGGAGTCTAAGAATTAC+TGG | 0.267570 | 1_1:+21163606 | None:intergenic |
| TATTTGAATGACAACCTTAA+AGG | 0.276541 | 1_1:-21162796 | Msa0013720:CDS |
| AATATCTTAACCTTAAAATA+TGG | 0.285328 | 1_1:+21163459 | None:intergenic |
| AGTCTAAGAATTACTGGATT+TGG | 0.299817 | 1_1:+21163612 | None:intergenic |
| ATATTTCTCCACAAATTTCT+TGG | 0.318034 | 1_1:+21163647 | None:intergenic |
| TGGAGCGTGACGGTGATATT+TGG | 0.333381 | 1_1:-21163557 | Msa0013720:CDS |
| AACTTCACCTCCACTTTCAT+AGG | 0.353581 | 1_1:+21162739 | None:intergenic |
| ACAATCTTCAAGAACTCTTT+GGG | 0.366633 | 1_1:+21163898 | None:intergenic |
| ACAAAGGAGGCATAATTAAG+AGG | 0.367124 | 1_1:-21163129 | Msa0013720:CDS |
| ATTTGAATGACAACCTTAAA+GGG | 0.391511 | 1_1:-21162795 | Msa0013720:CDS |
| TGGAAGAAAAGAGGCATTGA+AGG | 0.400150 | 1_1:-21162420 | Msa0013720:CDS |
| TATTTCTCCACAAATTTCTT+GGG | 0.405795 | 1_1:+21163648 | None:intergenic |
| TCATCTGCAAGCATTAGATT+TGG | 0.416468 | 1_1:-21162772 | Msa0013720:CDS |
| AAATTCGTGCAGTTCACAAA+TGG | 0.417597 | 1_1:-21161450 | Msa0013720:CDS |
| GAAGATTGCGGATTGAAGAT+TGG | 0.417689 | 1_1:-21161351 | Msa0013720:CDS |
| TTTGCAAAGTCTCTAAAAGA+TGG | 0.419454 | 1_1:-21163513 | Msa0013720:CDS |
| GACAATTCAAGTTCAAAACT+TGG | 0.430631 | 1_1:+21163061 | None:intergenic |
| AATTCGTGCAGTTCACAAAT+GGG | 0.433283 | 1_1:-21161449 | Msa0013720:CDS |
| GAACAATGACAAGGTTATGA+AGG | 0.451012 | 1_1:-21162468 | Msa0013720:intron |
| ACTCCCAAATGGTGCTCAAA+AGG | 0.455326 | 1_1:-21163592 | Msa0013720:CDS |
| ACACGAATCTCGATTGTGTT+CGG | 0.462954 | 1_1:+21161654 | None:intergenic |
| AATATTATGAGAGAACTTGT+AGG | 0.465524 | 1_1:-21161401 | Msa0013720:CDS |
| GAGAGTTCCCAAGAAATTTG+TGG | 0.469633 | 1_1:-21163655 | Msa0013720:CDS |
| TTTGGCTTGGGTGATAGTTA+TGG | 0.473644 | 1_1:+21162588 | None:intergenic |
| TGTGTTTCAGCAGACTTAGA+AGG | 0.481816 | 1_1:-21161693 | Msa0013720:intron |
| TATTTGGTTTAAGAGAAATT+GGG | 0.491470 | 1_1:-21163541 | Msa0013720:CDS |
| GATATTTGGTCACAATACAT+TGG | 0.502848 | 1_1:-21163442 | Msa0013720:CDS |
| GATAATATTTGGAAGAAAAG+AGG | 0.503729 | 1_1:-21162429 | Msa0013720:CDS |
| AGAACTTGTAGGTTCTATGC+AGG | 0.508431 | 1_1:-21161390 | Msa0013720:CDS |
| AGTACATACTCGAGAGATCA+TGG | 0.515974 | 1_1:+21162382 | None:intergenic |
| AGAACATGCATTGTCACCTC+TGG | 0.519227 | 1_1:-21162697 | Msa0013720:CDS |
| CATAAATTTAAGGAAGATTG+CGG | 0.529511 | 1_1:-21161363 | Msa0013720:CDS |
| GAGGCATTGAAGGAAGTTCA+AGG | 0.529967 | 1_1:-21162410 | Msa0013720:CDS |
| CTTGTAGGTTCTATGCAGGT+TGG | 0.536785 | 1_1:-21161386 | Msa0013720:CDS |
| TTCATAGATGAAAGTTGTGA+AGG | 0.538273 | 1_1:-21163396 | Msa0013720:CDS |
| CAAAGGAGGCATAATTAAGA+GGG | 0.540734 | 1_1:-21163128 | Msa0013720:CDS |
| GTAATTCTTAGACTCCCAAA+TGG | 0.561023 | 1_1:-21163603 | Msa0013720:CDS |
| AACTTTGCAGGTAGGAACAA+AGG | 0.563812 | 1_1:-21163145 | Msa0013720:intron |
| TTGTCACAATCTTACGCTCA+TGG | 0.577647 | 1_1:-21163043 | Msa0013720:CDS |
| GGCAAATGGCTTCCAACCAG+AGG | 0.587307 | 1_1:+21162681 | None:intergenic |
| CATGCATTGTCACCTCTGGT+TGG | 0.594204 | 1_1:-21162693 | Msa0013720:CDS |
| TATGCTCTTGAAAAGTCACT+TGG | 0.596669 | 1_1:+21162817 | None:intergenic |
| AAGAGACATAAAGAGTGTCA+TGG | 0.604494 | 1_1:-21161474 | Msa0013720:CDS |
| TGAGAACATGCCTATGAAAG+TGG | 0.608998 | 1_1:-21162749 | Msa0013720:CDS |
| ATAGTTATGGTGAACGAAAG+TGG | 0.610916 | 1_1:+21162601 | None:intergenic |
| ATAGTGTTGGCACATCTCAA+AGG | 0.615505 | 1_1:-21163323 | Msa0013720:CDS |
| GACAATGTTACTAATAGTGT+TGG | 0.615695 | 1_1:-21163336 | Msa0013720:CDS |
| TTCGTGCAGTTCACAAATGG+GGG | 0.622353 | 1_1:-21161447 | Msa0013720:CDS |
| ATTCGTGCAGTTCACAAATG+GGG | 0.622898 | 1_1:-21161448 | Msa0013720:CDS |
| GTTTCAGCAGACTTAGAAGG+TGG | 0.625758 | 1_1:-21161690 | Msa0013720:intron |
| CATAAGTAATCCTACCGGGT+AGG | 0.638502 | 1_1:+21161623 | None:intergenic |
| ATAACTATCACCCAAGCCAA+AGG | 0.651162 | 1_1:-21162586 | Msa0013720:intron |
| GCAGAACAAACAACTAGTGG+TGG | 0.662011 | 1_1:+21161259 | None:intergenic |
| TCGTGTGAACTCTACCTACC+CGG | 0.663506 | 1_1:-21161637 | Msa0013720:intron |
| CAACATCATGAACTGCACAA+TGG | 0.678699 | 1_1:-21163874 | Msa0013720:CDS |
| TTTGCAGGTAGGAACAAAGG+AGG | 0.713031 | 1_1:-21163142 | Msa0013720:intron |
| GAACATGCCTATGAAAGTGG+AGG | 0.736568 | 1_1:-21162746 | Msa0013720:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAAATAAAATAAAATTACA+AGG | + | chr1_1:21161976-21161995 | None:intergenic | 10.0% |
| !!! | TGTAATTTTATTTTATTTTG+AGG | - | chr1_1:21161976-21161995 | Msa0013720:intron | 10.0% |
| !!! | TGTTCTAAATTATTATTTAT+TGG | - | chr1_1:21162233-21162252 | Msa0013720:intron | 10.0% |
| !!! | AATTTGTAAGTTATATTTTT+TGG | + | chr1_1:21162528-21162547 | None:intergenic | 10.0% |
| !! | AAAAAATATAACTTACAAAT+TGG | - | chr1_1:21162527-21162546 | Msa0013720:intron | 10.0% |
| !!! | ATTTTTTAGAGATTTTAAAT+AGG | - | chr1_1:21162833-21162852 | Msa0013720:intron | 10.0% |
| !!! | TTTTCAAAAAAATTATAACT+AGG | - | chr1_1:21162890-21162909 | Msa0013720:intron | 10.0% |
| !!! | TTTTATAATATGATTATTGT+CGG | + | chr1_1:21163455-21163474 | None:intergenic | 10.0% |
| !! | ATTATTAACAAATGTATAGT+TGG | + | chr1_1:21161436-21161455 | None:intergenic | 15.0% |
| !! | AATATCTTAACCTTAAAATA+TGG | + | chr1_1:21161729-21161748 | None:intergenic | 15.0% |
| !!! | TATTTTAAGGTTAAGATATT+TGG | - | chr1_1:21161729-21161748 | Msa0013720:intron | 15.0% |
| !!! | TTCATCTATGAATTTTATAT+TGG | + | chr1_1:21161781-21161800 | None:intergenic | 15.0% |
| !!! | TAAGTATAATGTTTTATAGT+AGG | + | chr1_1:21162183-21162202 | None:intergenic | 15.0% |
| !!! | AAAAAAGTTACTAGTAATTT+TGG | - | chr1_1:21162300-21162319 | Msa0013720:intron | 15.0% |
| !!! | CTTTTTTAAATAAAGTATGA+AGG | + | chr1_1:21162630-21162649 | None:intergenic | 15.0% |
| !!! | ATAAAATTTAAAACAGAACT+TGG | + | chr1_1:21162958-21162977 | None:intergenic | 15.0% |
| !! | AAATCATTTGTAATATATGA+GGG | + | chr1_1:21163018-21163037 | None:intergenic | 15.0% |
| !! | TAAATCATTTGTAATATATG+AGG | + | chr1_1:21163019-21163038 | None:intergenic | 15.0% |
| !! | ACAAATGATTTAATATTTCA+AGG | - | chr1_1:21163027-21163046 | Msa0013720:intron | 15.0% |
| !!! | TTGAACTAGTTTTTTTTAAT+TGG | + | chr1_1:21163055-21163074 | None:intergenic | 15.0% |
| !!! | ATAGTGTACATATTTATTTT+TGG | - | chr1_1:21163096-21163115 | Msa0013720:CDS | 15.0% |
| !!! | TAGTGTACATATTTATTTTT+GGG | - | chr1_1:21163097-21163116 | Msa0013720:CDS | 15.0% |
| !!! | AACTTTTTTTCAAGAATTTT+TGG | + | chr1_1:21163250-21163269 | None:intergenic | 15.0% |
| !!! | AATCAAACCAAAAATTTTAT+AGG | - | chr1_1:21163326-21163345 | Msa0013720:CDS | 15.0% |
| !!! | ATCAAACCAAAAATTTTATA+GGG | - | chr1_1:21163327-21163346 | Msa0013720:CDS | 15.0% |
| !! | TGACACTATTAAAAAATAAA+CGG | + | chr1_1:21163401-21163420 | None:intergenic | 15.0% |
| !! | ACAATAATCATTTATGGATA+AGG | + | chr1_1:21161502-21161521 | None:intergenic | 20.0% |
| !!! | ATATTTGGTTTAAGAGAAAT+TGG | - | chr1_1:21161643-21161662 | Msa0013720:CDS | 20.0% |
| !!! | TATTTGGTTTAAGAGAAATT+GGG | - | chr1_1:21161644-21161663 | Msa0013720:CDS | 20.0% |
| !!! | GCTTTAGTTTTCAAATATTT+AGG | - | chr1_1:21161699-21161718 | Msa0013720:intron | 20.0% |
| !!! | TTAGTTTTCAAATATTTAGG+TGG | - | chr1_1:21161702-21161721 | Msa0013720:intron | 20.0% |
| !!! | TTTTTGTTTTTTAACTTTGC+AGG | - | chr1_1:21162028-21162047 | Msa0013720:intron | 20.0% |
| !!! | AAGTTATATTTTTTGGCAAA+TGG | + | chr1_1:21162521-21162540 | None:intergenic | 20.0% |
| !! | CAATTGATATTAAGCAAATT+TGG | + | chr1_1:21162679-21162698 | None:intergenic | 20.0% |
| !! | TCTATTGTGATGATAATATT+TGG | - | chr1_1:21162745-21162764 | Msa0013720:CDS | 20.0% |
| !!! | TTTTTTGAATGACCTAAAAA+GGG | - | chr1_1:21163268-21163287 | Msa0013720:intron | 20.0% |
| !! | CTCGTAAAAAAAAAAATTTC+CGG | + | chr1_1:21163300-21163319 | None:intergenic | 20.0% |
| !!! | GGAAATTTTTTTTTTTACGA+GGG | - | chr1_1:21163299-21163318 | Msa0013720:CDS | 20.0% |
| !!! | TCAAACCAAAAATTTTATAG+GGG | - | chr1_1:21163328-21163347 | Msa0013720:CDS | 20.0% |
| !! | GATTGTGATTTGTAATTGAA+AGG | + | chr1_1:21161414-21161433 | None:intergenic | 25.0% |
| ! | CAACAGACAATAATCATTTA+TGG | + | chr1_1:21161508-21161527 | None:intergenic | 25.0% |
| ! | TATTTCTCCACAAATTTCTT+GGG | + | chr1_1:21161540-21161559 | None:intergenic | 25.0% |
| ! | ATATTTCTCCACAAATTTCT+TGG | + | chr1_1:21161541-21161560 | None:intergenic | 25.0% |
| ! | AGAAATTTGTGGAGAAATAT+TGG | - | chr1_1:21161541-21161560 | Msa0013720:intron | 25.0% |
| !! | TGCTCAAAAGGAAATATTTT+GGG | - | chr1_1:21161605-21161624 | Msa0013720:intron | 25.0% |
| ! | ATTAATCAGCAAAAAATCTC+TGG | - | chr1_1:21161906-21161925 | Msa0013720:intron | 25.0% |
| ! | ATCTACTTTAGCCATTTATA+AGG | + | chr1_1:21162009-21162028 | None:intergenic | 25.0% |
| ! | TAAACCTTGAATTGAAATAG+AGG | - | chr1_1:21162342-21162361 | Msa0013720:intron | 25.0% |
| ! | TATTTGAATGACAACCTTAA+AGG | - | chr1_1:21162389-21162408 | Msa0013720:intron | 25.0% |
| ! | ATTTGAATGACAACCTTAAA+GGG | - | chr1_1:21162390-21162409 | Msa0013720:intron | 25.0% |
| ! | GATAATATTTGGAAGAAAAG+AGG | - | chr1_1:21162756-21162775 | Msa0013720:CDS | 25.0% |
| !! | TAACTAGGTTTTCTTACTTT+AGG | - | chr1_1:21162905-21162924 | Msa0013720:intron | 25.0% |
| !! | TCAAACCAAAAATTTTACGA+GGG | + | chr1_1:21163170-21163189 | None:intergenic | 25.0% |
| !! | ATCAAACCAAAAATTTTACG+AGG | + | chr1_1:21163171-21163190 | None:intergenic | 25.0% |
| !! | GTTTTTGAATGACCTAAAAA+GGG | + | chr1_1:21163228-21163247 | None:intergenic | 25.0% |
| !!! | GTTTTTTGAATGACCTAAAA+AGG | - | chr1_1:21163267-21163286 | Msa0013720:intron | 25.0% |
| !!! | CGGAAATTTTTTTTTTTACG+AGG | - | chr1_1:21163298-21163317 | Msa0013720:CDS | 25.0% |
| ! | TTTAACATAAGTAATCCTAC+CGG | + | chr1_1:21163570-21163589 | None:intergenic | 25.0% |
| ! | AGGATTACTTATGTTAAATG+TGG | - | chr1_1:21163572-21163591 | Msa0013720:CDS | 25.0% |
| !! | TCATAATATTGCACTTTTAC+AGG | + | chr1_1:21163774-21163793 | None:intergenic | 25.0% |
| ! | AATATTATGAGAGAACTTGT+AGG | - | chr1_1:21163784-21163803 | Msa0013720:intron | 25.0% |
| ! | CATAAATTTAAGGAAGATTG+CGG | - | chr1_1:21163822-21163841 | Msa0013720:intron | 25.0% |
| ACAATCTTCAAGAACTCTTT+GGG | + | chr1_1:21161290-21161309 | None:intergenic | 30.0% | |
| AACAATCTTCAAGAACTCTT+TGG | + | chr1_1:21161291-21161310 | None:intergenic | 30.0% | |
| ATGCAACAAGAAGAACTTTA+TGG | + | chr1_1:21161472-21161491 | None:intergenic | 30.0% | |
| AGTCTAAGAATTACTGGATT+TGG | + | chr1_1:21161576-21161595 | None:intergenic | 30.0% | |
| ! | GTGCTCAAAAGGAAATATTT+TGG | - | chr1_1:21161604-21161623 | Msa0013720:intron | 30.0% |
| !! | TCAAAAGGAAATATTTTGGG+TGG | - | chr1_1:21161608-21161627 | Msa0013720:intron | 30.0% |
| ! | TTTGCAAAGTCTCTAAAAGA+TGG | - | chr1_1:21161672-21161691 | Msa0013720:CDS | 30.0% |
| ! | TTTAGGTGGTCCATATTTTA+AGG | - | chr1_1:21161716-21161735 | Msa0013720:intron | 30.0% |
| GATATTTGGTCACAATACAT+TGG | - | chr1_1:21161743-21161762 | Msa0013720:intron | 30.0% | |
| TTCATAGATGAAAGTTGTGA+AGG | - | chr1_1:21161789-21161808 | Msa0013720:intron | 30.0% | |
| GACAATGTTACTAATAGTGT+TGG | - | chr1_1:21161849-21161868 | Msa0013720:intron | 30.0% | |
| TTACAAGGTAGAATAACAAC+TGG | + | chr1_1:21161961-21161980 | None:intergenic | 30.0% | |
| ! | GAGGTATTCTACCTTATAAA+TGG | - | chr1_1:21161995-21162014 | Msa0013720:intron | 30.0% |
| !!! | TGTTTTTTAACTTTGCAGGT+AGG | - | chr1_1:21162032-21162051 | Msa0013720:intron | 30.0% |
| ! | GACAATTCAAGTTCAAAACT+TGG | + | chr1_1:21162127-21162146 | None:intergenic | 30.0% |
| GTATCCTCTATTTCAATTCA+AGG | + | chr1_1:21162349-21162368 | None:intergenic | 30.0% | |
| AAGTATGAAGGAAAAACCTT+TGG | + | chr1_1:21162618-21162637 | None:intergenic | 30.0% | |
| TTGTCATTGTTCAAAGGAAT+TGG | + | chr1_1:21162709-21162728 | None:intergenic | 30.0% | |
| AATTCCTTTGAACAATGACA+AGG | - | chr1_1:21162708-21162727 | Msa0013720:CDS | 30.0% | |
| ATAACCTTGTCATTGTTCAA+AGG | + | chr1_1:21162715-21162734 | None:intergenic | 30.0% | |
| ATTTGTAATATATGAGGGAG+AGG | + | chr1_1:21163013-21163032 | None:intergenic | 30.0% | |
| GGAAATGACATATATTACAG+GGG | + | chr1_1:21163139-21163158 | None:intergenic | 30.0% | |
| CGGAAATGACATATATTACA+GGG | + | chr1_1:21163140-21163159 | None:intergenic | 30.0% | |
| ! | CCTGTAATATATGTCATTTC+CGG | - | chr1_1:21163138-21163157 | Msa0013720:CDS | 30.0% |
| CCGGAAAAAAAAATTTACGA+GGG | + | chr1_1:21163199-21163218 | None:intergenic | 30.0% | |
| !!! | CCCTCGTAAATTTTTTTTTC+CGG | - | chr1_1:21163196-21163215 | Msa0013720:intron | 30.0% |
| TCCGGAAAAAAAAATTTACG+AGG | + | chr1_1:21163200-21163219 | None:intergenic | 30.0% | |
| ! | GGTTTTTGAATGACCTAAAA+AGG | + | chr1_1:21163229-21163248 | None:intergenic | 30.0% |
| ! | TTTCGCCCCTATAAAATTTT+TGG | + | chr1_1:21163336-21163355 | None:intergenic | 30.0% |
| TTAACATAAGTAATCCTACC+GGG | + | chr1_1:21163569-21163588 | None:intergenic | 30.0% | |
| TTTGGGAGTCTAAGAATTAC+TGG | + | chr1_1:21161582-21161601 | None:intergenic | 35.0% | |
| GTAATTCTTAGACTCCCAAA+TGG | - | chr1_1:21161582-21161601 | Msa0013720:intron | 35.0% | |
| ! | TTTCCTTTTGAGCACCATTT+GGG | + | chr1_1:21161599-21161618 | None:intergenic | 35.0% |
| ! | ATTTCCTTTTGAGCACCATT+TGG | + | chr1_1:21161600-21161619 | None:intergenic | 35.0% |
| ACATCTCAAAGGAGAAAAAG+TGG | - | chr1_1:21161873-21161892 | Msa0013720:intron | 35.0% | |
| ! | ACAAAGGAGGCATAATTAAG+AGG | - | chr1_1:21162056-21162075 | Msa0013720:intron | 35.0% |
| ! | CAAAGGAGGCATAATTAAGA+GGG | - | chr1_1:21162057-21162076 | Msa0013720:intron | 35.0% |
| ! | TTACGCTCATGGCTATATTT+TGG | - | chr1_1:21162153-21162172 | Msa0013720:intron | 35.0% |
| TATGCTCTTGAAAAGTCACT+TGG | + | chr1_1:21162371-21162390 | None:intergenic | 35.0% | |
| TCATCTGCAAGCATTAGATT+TGG | - | chr1_1:21162413-21162432 | Msa0013720:CDS | 35.0% | |
| ATAGTTATGGTGAACGAAAG+TGG | + | chr1_1:21162587-21162606 | None:intergenic | 35.0% | |
| GAACAATGACAAGGTTATGA+AGG | - | chr1_1:21162717-21162736 | Msa0013720:CDS | 35.0% | |
| CCGGAAATGACATATATTAC+AGG | + | chr1_1:21163141-21163160 | None:intergenic | 35.0% | |
| ! | TTTCGCCCTCGTAAAATTTT+TGG | - | chr1_1:21163162-21163181 | Msa0013720:intron | 35.0% |
| ! | AATTTTATAGGGGCGAAAAC+CGG | - | chr1_1:21163338-21163357 | Msa0013720:CDS | 35.0% |
| ! | CCTGTAATATATGCCATTTC+CGG | + | chr1_1:21163360-21163379 | None:intergenic | 35.0% |
| CGGAAATGGCATATATTACA+GGG | - | chr1_1:21163358-21163377 | Msa0013720:CDS | 35.0% | |
| GGAAATGGCATATATTACAG+GGG | - | chr1_1:21163359-21163378 | Msa0013720:CDS | 35.0% | |
| !! | AAGAGACATAAAGAGTGTCA+TGG | - | chr1_1:21163711-21163730 | Msa0013720:intron | 35.0% |
| AAATTCGTGCAGTTCACAAA+TGG | - | chr1_1:21163735-21163754 | Msa0013720:intron | 35.0% | |
| AATTCGTGCAGTTCACAAAT+GGG | - | chr1_1:21163736-21163755 | Msa0013720:intron | 35.0% | |
| ! | TGCAGGTTGGCATAAATTTA+AGG | - | chr1_1:21163812-21163831 | Msa0013720:intron | 35.0% |
| CAACATCATGAACTGCACAA+TGG | - | chr1_1:21161311-21161330 | Msa0013720:CDS | 40.0% | |
| GAGAGTTCCCAAGAAATTTG+TGG | - | chr1_1:21161530-21161549 | Msa0013720:intron | 40.0% | |
| !! | ATAGTGTTGGCACATCTCAA+AGG | - | chr1_1:21161862-21161881 | Msa0013720:intron | 40.0% |
| AACTTTGCAGGTAGGAACAA+AGG | - | chr1_1:21162040-21162059 | Msa0013720:intron | 40.0% | |
| TTGTCACAATCTTACGCTCA+TGG | - | chr1_1:21162142-21162161 | Msa0013720:intron | 40.0% | |
| TGAGAACATGCCTATGAAAG+TGG | - | chr1_1:21162436-21162455 | Msa0013720:CDS | 40.0% | |
| AACTTCACCTCCACTTTCAT+AGG | + | chr1_1:21162449-21162468 | None:intergenic | 40.0% | |
| !! | TTTGGCTTGGGTGATAGTTA+TGG | + | chr1_1:21162600-21162619 | None:intergenic | 40.0% |
| ATAACTATCACCCAAGCCAA+AGG | - | chr1_1:21162599-21162618 | Msa0013720:CDS | 40.0% | |
| ! | GAAGGAAAAACCTTTGGCTT+GGG | + | chr1_1:21162612-21162631 | None:intergenic | 40.0% |
| TGAAGGAAAAACCTTTGGCT+TGG | + | chr1_1:21162613-21162632 | None:intergenic | 40.0% | |
| !! | TGGAAGAAAAGAGGCATTGA+AGG | - | chr1_1:21162765-21162784 | Msa0013720:CDS | 40.0% |
| AGTACATACTCGAGAGATCA+TGG | + | chr1_1:21162806-21162825 | None:intergenic | 40.0% | |
| ! | AATTTTACGAGGGCGAAAAC+CGG | + | chr1_1:21163160-21163179 | None:intergenic | 40.0% |
| ! | TTCCGGAAAACACCCTTTTT+AGG | - | chr1_1:21163213-21163232 | Msa0013720:intron | 40.0% |
| !!! | GACCTAAAAAGGGTGTTTTC+CGG | + | chr1_1:21163278-21163297 | None:intergenic | 40.0% |
| !!! | GACCTAAAAAGGGTGTTTTC+CGG | - | chr1_1:21163278-21163297 | Msa0013720:intron | 40.0% |
| ! | TTCCGGAAAACACCCTTTTT+AGG | + | chr1_1:21163213-21163232 | None:intergenic | 40.0% |
| CCGGAAATGGCATATATTAC+AGG | - | chr1_1:21163357-21163376 | Msa0013720:CDS | 40.0% | |
| TGTGTTTCAGCAGACTTAGA+AGG | - | chr1_1:21163492-21163511 | Msa0013720:CDS | 40.0% | |
| ACACGAATCTCGATTGTGTT+CGG | + | chr1_1:21163534-21163553 | None:intergenic | 40.0% | |
| ATTCGTGCAGTTCACAAATG+GGG | - | chr1_1:21163737-21163756 | Msa0013720:intron | 40.0% | |
| TCACAAATGGGGGAAAATCA+TGG | - | chr1_1:21163748-21163767 | Msa0013720:intron | 40.0% | |
| AGAACTTGTAGGTTCTATGC+AGG | - | chr1_1:21163795-21163814 | Msa0013720:intron | 40.0% | |
| ! | GAAGATTGCGGATTGAAGAT+TGG | - | chr1_1:21163834-21163853 | Msa0013720:intron | 40.0% |
| ACTCCCAAATGGTGCTCAAA+AGG | - | chr1_1:21161593-21161612 | Msa0013720:intron | 45.0% | |
| !! | ATATTTTGGGTGGAGCGTGA+CGG | - | chr1_1:21161618-21161637 | Msa0013720:intron | 45.0% |
| TTTGCAGGTAGGAACAAAGG+AGG | - | chr1_1:21162043-21162062 | Msa0013720:intron | 45.0% | |
| TGCTTGCAGATGACCCTTTA+AGG | + | chr1_1:21162406-21162425 | None:intergenic | 45.0% | |
| GAACATGCCTATGAAAGTGG+AGG | - | chr1_1:21162439-21162458 | Msa0013720:CDS | 45.0% | |
| AGAACATGCATTGTCACCTC+TGG | - | chr1_1:21162488-21162507 | Msa0013720:intron | 45.0% | |
| !! | GAGGCATTGAAGGAAGTTCA+AGG | - | chr1_1:21162775-21162794 | Msa0013720:CDS | 45.0% |
| GTTTCAGCAGACTTAGAAGG+TGG | - | chr1_1:21163495-21163514 | Msa0013720:CDS | 45.0% | |
| CATAAGTAATCCTACCGGGT+AGG | + | chr1_1:21163565-21163584 | None:intergenic | 45.0% | |
| TTCGTGCAGTTCACAAATGG+GGG | - | chr1_1:21163738-21163757 | Msa0013720:intron | 45.0% | |
| CTTGTAGGTTCTATGCAGGT+TGG | - | chr1_1:21163799-21163818 | Msa0013720:intron | 45.0% | |
| TGGAGCGTGACGGTGATATT+TGG | - | chr1_1:21161628-21161647 | Msa0013720:intron | 50.0% | |
| CATGCATTGTCACCTCTGGT+TGG | - | chr1_1:21162492-21162511 | Msa0013720:intron | 50.0% | |
| ATAGGGGCGAAAACCGGAAA+TGG | - | chr1_1:21163344-21163363 | Msa0013720:CDS | 50.0% | |
| TCGTGTGAACTCTACCTACC+CGG | - | chr1_1:21163548-21163567 | Msa0013720:CDS | 50.0% | |
| GGCAAATGGCTTCCAACCAG+AGG | + | chr1_1:21162507-21162526 | None:intergenic | 55.0% | |
| GTGAACTCTACCTACCCGGT+AGG | - | chr1_1:21163552-21163571 | Msa0013720:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 21161272 | 21163935 | 21161272 | ID=Msa0013720;Name=Msa0013720 |
| chr1_1 | mRNA | 21161272 | 21163935 | 21161272 | ID=Msa0013720-mRNA-1;Parent=Msa0013720;Name=Msa0013720-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|1|7|0|416 |
| chr1_1 | exon | 21163867 | 21163935 | 21163867 | ID=Msa0013720-mRNA-1:exon:7540;Parent=Msa0013720-mRNA-1 |
| chr1_1 | exon | 21163280 | 21163676 | 21163280 | ID=Msa0013720-mRNA-1:exon:7539;Parent=Msa0013720-mRNA-1 |
| chr1_1 | exon | 21163033 | 21163157 | 21163033 | ID=Msa0013720-mRNA-1:exon:7538;Parent=Msa0013720-mRNA-1 |
| chr1_1 | exon | 21162587 | 21162845 | 21162587 | ID=Msa0013720-mRNA-1:exon:7537;Parent=Msa0013720-mRNA-1 |
| chr1_1 | exon | 21162391 | 21162477 | 21162391 | ID=Msa0013720-mRNA-1:exon:7536;Parent=Msa0013720-mRNA-1 |
| chr1_1 | exon | 21161638 | 21161705 | 21161638 | ID=Msa0013720-mRNA-1:exon:7535;Parent=Msa0013720-mRNA-1 |
| chr1_1 | exon | 21161272 | 21161517 | 21161272 | ID=Msa0013720-mRNA-1:exon:7534;Parent=Msa0013720-mRNA-1 |
| chr1_1 | CDS | 21163867 | 21163935 | 21163867 | ID=Msa0013720-mRNA-1:cds;Parent=Msa0013720-mRNA-1 |
| chr1_1 | CDS | 21163280 | 21163676 | 21163280 | ID=Msa0013720-mRNA-1:cds;Parent=Msa0013720-mRNA-1 |
| chr1_1 | CDS | 21163033 | 21163157 | 21163033 | ID=Msa0013720-mRNA-1:cds;Parent=Msa0013720-mRNA-1 |
| chr1_1 | CDS | 21162587 | 21162845 | 21162587 | ID=Msa0013720-mRNA-1:cds;Parent=Msa0013720-mRNA-1 |
| chr1_1 | CDS | 21162391 | 21162477 | 21162391 | ID=Msa0013720-mRNA-1:cds;Parent=Msa0013720-mRNA-1 |
| chr1_1 | CDS | 21161638 | 21161705 | 21161638 | ID=Msa0013720-mRNA-1:cds;Parent=Msa0013720-mRNA-1 |
| chr1_1 | CDS | 21161272 | 21161517 | 21161272 | ID=Msa0013720-mRNA-1:cds;Parent=Msa0013720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
