Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0014420 | RHN78369.1 | 92.767 | 553 | 40 | 0 | 1 | 553 | 18 | 570 | 0.0 | 1063 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0014420 | sp|Q336N8|JM706_ORYSJ | 52.621 | 477 | 219 | 4 | 13 | 485 | 88 | 561 | 3.22e-172 | 512 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0014420 | TR | Jumonji |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0014420 | MtrunA17_Chr1g0164731 | 92.767 | 553 | 40 | 0 | 1 | 553 | 18 | 570 | 0.0 | 1063 |
| Msa0014420 | MtrunA17_Chr1g0164761 | 70.968 | 558 | 116 | 4 | 22 | 553 | 2 | 539 | 0.0 | 798 |
| Msa0014420 | MtrunA17_Chr5g0410721 | 56.173 | 486 | 212 | 1 | 10 | 495 | 71 | 555 | 0.0 | 583 |
| Msa0014420 | MtrunA17_Chr3g0116441 | 38.420 | 367 | 190 | 8 | 21 | 366 | 11 | 362 | 6.10e-69 | 241 |
| Msa0014420 | MtrunA17_Chr8g0380981 | 36.176 | 387 | 174 | 8 | 24 | 345 | 39 | 417 | 5.58e-56 | 203 |
| Msa0014420 | MtrunA17_Chr1g0199511 | 46.277 | 188 | 97 | 1 | 172 | 359 | 291 | 474 | 5.87e-54 | 197 |
| Msa0014420 | MtrunA17_Chr1g0189211 | 30.331 | 544 | 276 | 16 | 24 | 483 | 146 | 670 | 1.40e-53 | 196 |
| Msa0014420 | MtrunA17_Chr7g0214951 | 74.167 | 120 | 13 | 2 | 201 | 319 | 99 | 201 | 1.64e-52 | 178 |
| Msa0014420 | MtrunA17_Chr2g0303101 | 33.827 | 405 | 187 | 11 | 24 | 359 | 48 | 440 | 1.35e-51 | 190 |
| Msa0014420 | MtrunA17_Chr5g0397501 | 33.333 | 429 | 243 | 16 | 107 | 512 | 302 | 710 | 1.41e-51 | 190 |
| Msa0014420 | MtrunA17_Chr7g0261401 | 25.990 | 404 | 264 | 9 | 176 | 554 | 338 | 731 | 1.73e-29 | 123 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0014420 | AT5G46910.1 | 54.321 | 486 | 221 | 1 | 2 | 487 | 77 | 561 | 0.0 | 570 |
| Msa0014420 | AT5G46910.2 | 54.321 | 486 | 221 | 1 | 2 | 487 | 77 | 561 | 0.0 | 569 |
| Msa0014420 | AT3G48430.1 | 34.286 | 385 | 211 | 8 | 12 | 359 | 4 | 383 | 8.62e-61 | 218 |
| Msa0014420 | AT2G34880.1 | 31.086 | 534 | 273 | 19 | 25 | 483 | 58 | 571 | 1.47e-57 | 206 |
| Msa0014420 | AT1G63490.1 | 35.695 | 367 | 197 | 11 | 107 | 451 | 46 | 395 | 8.83e-56 | 203 |
| Msa0014420 | AT1G63490.2 | 35.695 | 367 | 197 | 12 | 107 | 451 | 299 | 648 | 1.07e-55 | 203 |
| Msa0014420 | AT1G63490.4 | 35.695 | 367 | 197 | 12 | 107 | 451 | 299 | 648 | 1.13e-55 | 203 |
| Msa0014420 | AT5G04240.1 | 48.404 | 188 | 93 | 1 | 172 | 359 | 259 | 442 | 5.87e-54 | 198 |
| Msa0014420 | AT1G30810.3 | 31.346 | 520 | 258 | 18 | 24 | 463 | 55 | 555 | 1.84e-53 | 194 |
| Msa0014420 | AT1G30810.2 | 31.346 | 520 | 258 | 18 | 24 | 463 | 55 | 555 | 1.84e-53 | 194 |
| Msa0014420 | AT1G30810.1 | 31.346 | 520 | 258 | 18 | 24 | 463 | 55 | 555 | 1.84e-53 | 194 |
| Msa0014420 | AT4G20400.1 | 28.820 | 517 | 278 | 16 | 24 | 463 | 52 | 555 | 2.63e-52 | 192 |
| Msa0014420 | AT1G08620.2 | 33.816 | 414 | 188 | 12 | 25 | 363 | 143 | 545 | 2.65e-52 | 193 |
| Msa0014420 | AT1G08620.4 | 33.816 | 414 | 188 | 12 | 25 | 363 | 143 | 545 | 2.65e-52 | 193 |
| Msa0014420 | AT1G08620.1 | 33.816 | 414 | 188 | 12 | 25 | 363 | 143 | 545 | 2.65e-52 | 193 |
| Msa0014420 | AT1G08620.3 | 33.816 | 414 | 188 | 12 | 25 | 363 | 157 | 559 | 2.86e-52 | 193 |
| Msa0014420 | AT4G20400.2 | 29.109 | 505 | 268 | 16 | 36 | 463 | 7 | 498 | 4.50e-49 | 182 |
| Msa0014420 | AT2G38950.1 | 26.347 | 501 | 296 | 16 | 22 | 467 | 102 | 584 | 4.46e-32 | 131 |
| Msa0014420 | AT1G63490.3 | 34.973 | 183 | 106 | 5 | 274 | 451 | 15 | 189 | 7.75e-24 | 107 |
Find 90 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGCCATTGTACAGTCTTTC+TGG | 0.128715 | 1_1:+22886082 | Msa0014420:CDS |
| TTGATTTGGATGATCTAAAT+TGG | 0.203515 | 1_1:+22883864 | Msa0014420:CDS |
| TGTCTTAATGAAAGAGAAAA+AGG | 0.225632 | 1_1:+22884189 | Msa0014420:CDS |
| AGCTCTTCAAATACATTATT+AGG | 0.253287 | 1_1:+22886165 | Msa0014420:CDS |
| TTGGTGATTGGTTTCCATTT+GGG | 0.283394 | 1_1:+22885914 | Msa0014420:CDS |
| AAACAATTGTACAGCCTCTT+AGG | 0.293247 | 1_1:+22884224 | Msa0014420:CDS |
| AATCCAGCATGATATGAATT+AGG | 0.298533 | 1_1:-22885274 | None:intergenic |
| TTACCATGGAAAAGGCAAAT+TGG | 0.303547 | 1_1:-22886261 | None:intergenic |
| GACAAAATCAGCAGAATTAG+AGG | 0.307535 | 1_1:-22884170 | None:intergenic |
| CAAATCGAGTAAACTTGATT+TGG | 0.309253 | 1_1:+22883850 | Msa0014420:CDS |
| GCTCCCGAGGCTTCTAAATA+TGG | 0.309276 | 1_1:+22883968 | Msa0014420:CDS |
| AGTTCCTCATATGGAATTAT+AGG | 0.316333 | 1_1:-22885976 | None:intergenic |
| TGTTCTGATGGATGGTATAC+TGG | 0.323713 | 1_1:-22883908 | None:intergenic |
| GCAGAATTAGAGGCACTAAT+TGG | 0.335063 | 1_1:-22884160 | None:intergenic |
| ATAAAGGGTTCGCGGTCTTT+TGG | 0.338413 | 1_1:-22886884 | None:intergenic |
| ATTGGTGATTGGTTTCCATT+TGG | 0.339040 | 1_1:+22885913 | Msa0014420:CDS |
| TTACAAAGAAGTTCCTCATA+TGG | 0.344918 | 1_1:-22885985 | None:intergenic |
| GGATGGTATACTGGACATTC+TGG | 0.356909 | 1_1:-22883899 | None:intergenic |
| TATATCTTTCTCATTCCATT+TGG | 0.357030 | 1_1:-22884251 | None:intergenic |
| GAGAAGGGAACAGTTGAGTA+TGG | 0.365357 | 1_1:+22884514 | Msa0014420:CDS |
| TAAACTTTGCTATTGGTGAT+TGG | 0.380389 | 1_1:+22885902 | Msa0014420:CDS |
| AATGAGCAAATTCAATTTGA+AGG | 0.382800 | 1_1:+22884588 | Msa0014420:CDS |
| TACCATGGAAAAGGCAAATT+GGG | 0.391203 | 1_1:-22886260 | None:intergenic |
| CTCATTCCAAGTTTATCATC+AGG | 0.397301 | 1_1:-22884571 | None:intergenic |
| GAAGAACTGTCAACTCTGTA+AGG | 0.420264 | 1_1:+22886743 | Msa0014420:CDS |
| TCATGTTGTAACAAGACATT+AGG | 0.439737 | 1_1:-22885199 | None:intergenic |
| GAAGCTGTAAACTTTGCTAT+TGG | 0.453482 | 1_1:+22885895 | Msa0014420:CDS |
| AATTGAAAGGCTGCAGAACT+AGG | 0.454817 | 1_1:-22885073 | None:intergenic |
| GGAAAATGCCTTGTTTGCTA+TGG | 0.457031 | 1_1:-22884416 | None:intergenic |
| TGCTCAAATTCTTGTTCTGA+TGG | 0.458499 | 1_1:-22883920 | None:intergenic |
| GCTACCTATAATTCCATATG+AGG | 0.458631 | 1_1:+22885972 | Msa0014420:CDS |
| ACTGAAAGCAGAATGATAAT+CGG | 0.460027 | 1_1:+22886701 | Msa0014420:intron |
| CTGATCCTATGCTTTACATT+GGG | 0.461409 | 1_1:+22884865 | Msa0014420:CDS |
| TTCCATTTGGAAAGCCTAAG+AGG | 0.464543 | 1_1:-22884238 | None:intergenic |
| ACATGATGTGCCGGTTTACA+AGG | 0.470430 | 1_1:+22885216 | Msa0014420:CDS |
| TTGCTTGCTTCAGCCCCAAA+TGG | 0.473962 | 1_1:-22885928 | None:intergenic |
| TACAAGGCGGTGCAAAATCC+AGG | 0.476036 | 1_1:+22885232 | Msa0014420:CDS |
| GAGTATGGAGTGAACATTGA+GGG | 0.478961 | 1_1:+22884529 | Msa0014420:CDS |
| TTTCCTAATTCATATCATGC+TGG | 0.481919 | 1_1:+22885271 | Msa0014420:CDS |
| ACTGATCCTATGCTTTACAT+TGG | 0.488180 | 1_1:+22884864 | Msa0014420:CDS |
| CAAATTCTTGTTCTGATGGA+TGG | 0.494920 | 1_1:-22883916 | None:intergenic |
| ATTTACATATCAAGAATTTG+AGG | 0.498743 | 1_1:+22884393 | Msa0014420:CDS |
| TGACATGCAGCCTCTGCCAT+AGG | 0.501176 | 1_1:+22886193 | Msa0014420:CDS |
| AAGGTGATGACAAACTCTCC+TGG | 0.504606 | 1_1:-22885250 | None:intergenic |
| AGCCTCTTAGGCTTTCCAAA+TGG | 0.506480 | 1_1:+22884236 | Msa0014420:CDS |
| TGGTGATTGGTTTCCATTTG+GGG | 0.516058 | 1_1:+22885915 | Msa0014420:CDS |
| TGCTATTCAGTATGTTTGCA+TGG | 0.518171 | 1_1:+22884889 | Msa0014420:CDS |
| TAGAAGATCACTATTTGTAC+AGG | 0.521776 | 1_1:+22884916 | Msa0014420:CDS |
| TTACCTTCCTCTCTTAGAGA+AGG | 0.529901 | 1_1:-22884278 | None:intergenic |
| CTCAAATTATAAAGGGTTCG+CGG | 0.531379 | 1_1:-22886892 | None:intergenic |
| TGTGATCCTGATGATAAACT+TGG | 0.532849 | 1_1:+22884565 | Msa0014420:CDS |
| TGTTGTAACAAGACATTAGG+AGG | 0.534027 | 1_1:-22885196 | None:intergenic |
| TTAGCAGAACATGGAGAGAA+TGG | 0.538483 | 1_1:+22885136 | Msa0014420:CDS |
| TGAAATGATACACGGAGAGA+AGG | 0.542147 | 1_1:+22884498 | Msa0014420:CDS |
| ACTCAGGTGGAAATAAAACT+TGG | 0.542933 | 1_1:+22885041 | Msa0014420:CDS |
| AAGCTACATAACAATCCCTA+TGG | 0.550057 | 1_1:-22886209 | None:intergenic |
| GACATGCAGCCTCTGCCATA+GGG | 0.557662 | 1_1:+22886194 | Msa0014420:CDS |
| TAACCTTCTCTAAGAGAGGA+AGG | 0.559927 | 1_1:+22884275 | Msa0014420:CDS |
| TAAACTGAAAACAAGAGTCA+TGG | 0.561190 | 1_1:+22886777 | Msa0014420:CDS |
| GTACCATATTTAGAAGCCTC+GGG | 0.562686 | 1_1:-22883971 | None:intergenic |
| GAAATGATACACGGAGAGAA+GGG | 0.565666 | 1_1:+22884499 | Msa0014420:CDS |
| ATAAATTATCATCACTCAGG+TGG | 0.565750 | 1_1:+22885028 | Msa0014420:CDS |
| CAAGACATTAGGAGGGAACA+TGG | 0.568622 | 1_1:-22885188 | None:intergenic |
| CATGTCATTCTTCTTAAAAG+CGG | 0.568682 | 1_1:-22886406 | None:intergenic |
| ATTTGAGGCCATAGCAAACA+AGG | 0.572015 | 1_1:+22884408 | Msa0014420:CDS |
| CAAAAGCAAACTCGAAGTCA+TGG | 0.572919 | 1_1:+22886050 | Msa0014420:CDS |
| CGTACCATATTTAGAAGCCT+CGG | 0.575055 | 1_1:-22883972 | None:intergenic |
| TACTTCTCCATCAGTGATGA+GGG | 0.579966 | 1_1:+22886861 | Msa0014420:CDS |
| GGTGGAAATAAAACTTGGTA+CGG | 0.583755 | 1_1:+22885046 | Msa0014420:CDS |
| ATAATAACCTTCTCTAAGAG+AGG | 0.584975 | 1_1:+22884271 | Msa0014420:CDS |
| CATAACAATCCCTATGGCAG+AGG | 0.587190 | 1_1:-22886203 | None:intergenic |
| TATCATGCTGGATTTAGTCA+TGG | 0.587724 | 1_1:+22885283 | Msa0014420:CDS |
| TCTACAGAAAATTGCTCCCG+AGG | 0.589922 | 1_1:+22883955 | Msa0014420:CDS |
| AAATGAATCAGACGAAGACA+AGG | 0.593088 | 1_1:+22886821 | Msa0014420:CDS |
| AAGAACTGTCAACTCTGTAA+GGG | 0.595848 | 1_1:+22886744 | Msa0014420:CDS |
| AACAAAATCTTAGCAGAACA+TGG | 0.596081 | 1_1:+22885127 | Msa0014420:CDS |
| AGTATAAATTATCATCACTC+AGG | 0.598943 | 1_1:+22885025 | Msa0014420:intron |
| CTTGTTACAACATGATGTGC+CGG | 0.599827 | 1_1:+22885207 | Msa0014420:CDS |
| ATACTTCTCCATCAGTGATG+AGG | 0.601559 | 1_1:+22886860 | Msa0014420:CDS |
| AGCATCCCAATGTAAAGCAT+AGG | 0.618659 | 1_1:-22884870 | None:intergenic |
| ATGGAAAAGGCAAATTGGGT+AGG | 0.620491 | 1_1:-22886256 | None:intergenic |
| AGCATGATATGAATTAGGAA+AGG | 0.636839 | 1_1:-22885269 | None:intergenic |
| ACTAAACGCAGCGGAGACTG+AGG | 0.652092 | 1_1:-22884744 | None:intergenic |
| CCGCTGCGTTTAGTTGACAG+AGG | 0.658090 | 1_1:+22884753 | Msa0014420:CDS |
| TTCTGGCATGAAATGATACA+CGG | 0.662413 | 1_1:+22884490 | Msa0014420:CDS |
| TGAGTATGGAGTGAACATTG+AGG | 0.678526 | 1_1:+22884528 | Msa0014420:CDS |
| GTTGTAACAAGACATTAGGA+GGG | 0.697642 | 1_1:-22885195 | None:intergenic |
| TGATGTGCCGGTTTACAAGG+CGG | 0.701604 | 1_1:+22885219 | Msa0014420:CDS |
| ATGCCAGAAAGACTGTACAA+TGG | 0.727660 | 1_1:-22886085 | None:intergenic |
| CCTCTGTCAACTAAACGCAG+CGG | 0.751324 | 1_1:-22884753 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATGATTTTTTATCAAATA+TGG | + | chr1_1:22884038-22884057 | Msa0014420:intron | 10.0% |
| !!! | TTTCATTTGATTTTAGAATT+TGG | + | chr1_1:22884713-22884732 | Msa0014420:intron | 15.0% |
| !!! | TGATTCTGTTTTAATATTTT+AGG | + | chr1_1:22884836-22884855 | Msa0014420:intron | 15.0% |
| !!! | GATTCTGTTTTAATATTTTA+GGG | + | chr1_1:22884837-22884856 | Msa0014420:intron | 15.0% |
| !! | TTTATTCTTGATAGATAAAT+TGG | + | chr1_1:22886324-22886343 | Msa0014420:intron | 15.0% |
| !!! | TGTTTTTCTCAAATTATAAA+GGG | - | chr1_1:22886902-22886921 | None:intergenic | 15.0% |
| !!! | ATGTTTTTCTCAAATTATAA+AGG | - | chr1_1:22886903-22886922 | None:intergenic | 15.0% |
| !!! | ATTTTCTGTAGATAAATCAA+AGG | - | chr1_1:22883947-22883966 | None:intergenic | 20.0% |
| !!! | TTATTCATTTTGCATATTTC+AGG | + | chr1_1:22884118-22884137 | Msa0014420:intron | 20.0% |
| !!! | AGTTTAGTTTCTAATCATTT+AGG | - | chr1_1:22884342-22884361 | None:intergenic | 20.0% |
| !! | ATTTACATATCAAGAATTTG+AGG | + | chr1_1:22884393-22884412 | Msa0014420:CDS | 20.0% |
| !!! | ACATAAGTATTTGAAATATC+AGG | - | chr1_1:22885767-22885786 | None:intergenic | 20.0% |
| !!! | TTTATTTTCTTGTTGAGTTT+AGG | + | chr1_1:22885859-22885878 | Msa0014420:intron | 20.0% |
| !! | AATTATCAAATAGACTAATG+AGG | - | chr1_1:22886289-22886308 | None:intergenic | 20.0% |
| !!! | TTGATTTGGATGATCTAAAT+TGG | + | chr1_1:22883864-22883883 | Msa0014420:CDS | 25.0% |
| ! | AATATGGTTGTCAAATATGT+TGG | + | chr1_1:22884054-22884073 | Msa0014420:intron | 25.0% |
| ! | TGTCTTAATGAAAGAGAAAA+AGG | + | chr1_1:22884189-22884208 | Msa0014420:CDS | 25.0% |
| ! | TATATCTTTCTCATTCCATT+TGG | - | chr1_1:22884254-22884273 | None:intergenic | 25.0% |
| !! | TTTTGAACTGCAAAATATGT+TGG | - | chr1_1:22884440-22884459 | None:intergenic | 25.0% |
| ! | AATGAGCAAATTCAATTTGA+AGG | + | chr1_1:22884588-22884607 | Msa0014420:CDS | 25.0% |
| ! | TAGAGATGTTAATAGAGAAA+GGG | - | chr1_1:22884658-22884677 | None:intergenic | 25.0% |
| ! | ATAGAGATGTTAATAGAGAA+AGG | - | chr1_1:22884659-22884678 | None:intergenic | 25.0% |
| ! | ATAATAACTTATTCCAGACT+AGG | - | chr1_1:22884807-22884826 | None:intergenic | 25.0% |
| ! | AGTATAAATTATCATCACTC+AGG | + | chr1_1:22885025-22885044 | Msa0014420:intron | 25.0% |
| !!! | TTGTTTTTTGTGCAAGAAAT+TGG | - | chr1_1:22885168-22885187 | None:intergenic | 25.0% |
| ! | TGATTTAGTCATGTTTATGT+TGG | + | chr1_1:22885449-22885468 | Msa0014420:intron | 25.0% |
| !! | TAATTGAAAGGTATGATTCA+AGG | + | chr1_1:22885518-22885537 | Msa0014420:intron | 25.0% |
| !! | TTTACATTTTGCACTAGATA+GGG | - | chr1_1:22885824-22885843 | None:intergenic | 25.0% |
| ! | AGCTCTTCAAATACATTATT+AGG | + | chr1_1:22886165-22886184 | Msa0014420:CDS | 25.0% |
| !! | TTTTACCTGTTCAAAACTTT+TGG | - | chr1_1:22886451-22886470 | None:intergenic | 25.0% |
| CAAATCGAGTAAACTTGATT+TGG | + | chr1_1:22883850-22883869 | Msa0014420:CDS | 30.0% | |
| ! | ATAATAACCTTCTCTAAGAG+AGG | + | chr1_1:22884271-22884290 | Msa0014420:CDS | 30.0% |
| !!! | TTTGATTTTAGAATTTGGCG+CGG | + | chr1_1:22884718-22884737 | Msa0014420:intron | 30.0% |
| TAGAAGATCACTATTTGTAC+AGG | + | chr1_1:22884916-22884935 | Msa0014420:CDS | 30.0% | |
| ATAAATTATCATCACTCAGG+TGG | + | chr1_1:22885028-22885047 | Msa0014420:CDS | 30.0% | |
| ! | GACAGTCTTTTCAAATTGAA+AGG | - | chr1_1:22885089-22885108 | None:intergenic | 30.0% |
| AACAAAATCTTAGCAGAACA+TGG | + | chr1_1:22885127-22885146 | Msa0014420:CDS | 30.0% | |
| TCATGTTGTAACAAGACATT+AGG | - | chr1_1:22885202-22885221 | None:intergenic | 30.0% | |
| AGCATGATATGAATTAGGAA+AGG | - | chr1_1:22885272-22885291 | None:intergenic | 30.0% | |
| TTTCCTAATTCATATCATGC+TGG | + | chr1_1:22885271-22885290 | Msa0014420:CDS | 30.0% | |
| AATCCAGCATGATATGAATT+AGG | - | chr1_1:22885277-22885296 | None:intergenic | 30.0% | |
| TCAAGGTTAATCTTGTAAAC+TGG | + | chr1_1:22885535-22885554 | Msa0014420:intron | 30.0% | |
| ACAAGTAATCTGAAAATCCT+AGG | + | chr1_1:22885572-22885591 | Msa0014420:intron | 30.0% | |
| AAAATCCTAGGCTTGAAAAA+TGG | + | chr1_1:22885584-22885603 | Msa0014420:intron | 30.0% | |
| GAACAGGCAATATTTGATTA+TGG | - | chr1_1:22885647-22885666 | None:intergenic | 30.0% | |
| GTCCAAAAGTAAACAGATTA+CGG | - | chr1_1:22885671-22885690 | None:intergenic | 30.0% | |
| CTCTATATGCACAAACTATT+AGG | - | chr1_1:22885706-22885725 | None:intergenic | 30.0% | |
| ACTTATGTTGCATACTTGTT+CGG | + | chr1_1:22885779-22885798 | Msa0014420:intron | 30.0% | |
| ! | CTTTACATTTTGCACTAGAT+AGG | - | chr1_1:22885825-22885844 | None:intergenic | 30.0% |
| TCTAGTGCAAAATGTAAAGA+TGG | + | chr1_1:22885826-22885845 | Msa0014420:intron | 30.0% | |
| !!! | TTGAGTTTAGGTTTTAACTG+TGG | + | chr1_1:22885871-22885890 | Msa0014420:intron | 30.0% |
| !! | TAAACTTTGCTATTGGTGAT+TGG | + | chr1_1:22885902-22885921 | Msa0014420:CDS | 30.0% |
| AGTTCCTCATATGGAATTAT+AGG | - | chr1_1:22885979-22885998 | None:intergenic | 30.0% | |
| TTACAAAGAAGTTCCTCATA+TGG | - | chr1_1:22885988-22886007 | None:intergenic | 30.0% | |
| ! | TTTGTATCTTCTGACTTTTG+AGG | - | chr1_1:22886034-22886053 | None:intergenic | 30.0% |
| CATGTCATTCTTCTTAAAAG+CGG | - | chr1_1:22886409-22886428 | None:intergenic | 30.0% | |
| TACTGCATTACTTCATCTTT+AGG | + | chr1_1:22886630-22886649 | Msa0014420:intron | 30.0% | |
| ACTGAAAGCAGAATGATAAT+CGG | + | chr1_1:22886701-22886720 | Msa0014420:intron | 30.0% | |
| TAAACTGAAAACAAGAGTCA+TGG | + | chr1_1:22886777-22886796 | Msa0014420:CDS | 30.0% | |
| CAAATTCTTGTTCTGATGGA+TGG | - | chr1_1:22883919-22883938 | None:intergenic | 35.0% | |
| TGCTCAAATTCTTGTTCTGA+TGG | - | chr1_1:22883923-22883942 | None:intergenic | 35.0% | |
| ! | AGATGATTTCCTTTTCATCG+CGG | + | chr1_1:22884012-22884031 | Msa0014420:intron | 35.0% |
| ATGTAAGCATGTGCACAATA+TGG | - | chr1_1:22884087-22884106 | None:intergenic | 35.0% | |
| GACAAAATCAGCAGAATTAG+AGG | - | chr1_1:22884173-22884192 | None:intergenic | 35.0% | |
| AAACAATTGTACAGCCTCTT+AGG | + | chr1_1:22884224-22884243 | Msa0014420:CDS | 35.0% | |
| !! | TAGACATCGAAAAAGCATTC+TGG | + | chr1_1:22884473-22884492 | Msa0014420:CDS | 35.0% |
| TTCTGGCATGAAATGATACA+CGG | + | chr1_1:22884490-22884509 | Msa0014420:CDS | 35.0% | |
| TGTGATCCTGATGATAAACT+TGG | + | chr1_1:22884565-22884584 | Msa0014420:CDS | 35.0% | |
| CTCATTCCAAGTTTATCATC+AGG | - | chr1_1:22884574-22884593 | None:intergenic | 35.0% | |
| ACTGATCCTATGCTTTACAT+TGG | + | chr1_1:22884864-22884883 | Msa0014420:CDS | 35.0% | |
| CTGATCCTATGCTTTACATT+GGG | + | chr1_1:22884865-22884884 | Msa0014420:CDS | 35.0% | |
| TGCTATTCAGTATGTTTGCA+TGG | + | chr1_1:22884889-22884908 | Msa0014420:CDS | 35.0% | |
| ACTCAGGTGGAAATAAAACT+TGG | + | chr1_1:22885041-22885060 | Msa0014420:CDS | 35.0% | |
| GGTGGAAATAAAACTTGGTA+CGG | + | chr1_1:22885046-22885065 | Msa0014420:CDS | 35.0% | |
| GTTGTAACAAGACATTAGGA+GGG | - | chr1_1:22885198-22885217 | None:intergenic | 35.0% | |
| TGTTGTAACAAGACATTAGG+AGG | - | chr1_1:22885199-22885218 | None:intergenic | 35.0% | |
| TATCATGCTGGATTTAGTCA+TGG | + | chr1_1:22885283-22885302 | Msa0014420:CDS | 35.0% | |
| TGGCTATTGCTCATAGTTTA+CGG | + | chr1_1:22885469-22885488 | Msa0014420:intron | 35.0% | |
| TATTGCTCATAGTTTACGGA+TGG | + | chr1_1:22885473-22885492 | Msa0014420:intron | 35.0% | |
| TAGTTTACGGATGGATAAGT+AGG | + | chr1_1:22885482-22885501 | Msa0014420:intron | 35.0% | |
| AGATCGCTCGAATAATTGAA+AGG | + | chr1_1:22885506-22885525 | Msa0014420:intron | 35.0% | |
| ! | CTCCGTAATCTGTTTACTTT+TGG | + | chr1_1:22885666-22885685 | Msa0014420:intron | 35.0% |
| !! | AATCTGTTTACTTTTGGACC+AGG | + | chr1_1:22885672-22885691 | Msa0014420:intron | 35.0% |
| !! | ATCTGTTTACTTTTGGACCA+GGG | + | chr1_1:22885673-22885692 | Msa0014420:intron | 35.0% |
| ! | ATTTTGCACTAGATAGGGAT+AGG | - | chr1_1:22885819-22885838 | None:intergenic | 35.0% |
| ! | GAAGCTGTAAACTTTGCTAT+TGG | + | chr1_1:22885895-22885914 | Msa0014420:CDS | 35.0% |
| !! | ATTGGTGATTGGTTTCCATT+TGG | + | chr1_1:22885913-22885932 | Msa0014420:CDS | 35.0% |
| !! | TTGGTGATTGGTTTCCATTT+GGG | + | chr1_1:22885914-22885933 | Msa0014420:CDS | 35.0% |
| GCTACCTATAATTCCATATG+AGG | + | chr1_1:22885972-22885991 | Msa0014420:CDS | 35.0% | |
| AAGCTACATAACAATCCCTA+TGG | - | chr1_1:22886212-22886231 | None:intergenic | 35.0% | |
| TACCATGGAAAAGGCAAATT+GGG | - | chr1_1:22886263-22886282 | None:intergenic | 35.0% | |
| TTACCATGGAAAAGGCAAAT+TGG | - | chr1_1:22886264-22886283 | None:intergenic | 35.0% | |
| ! | ATGAGGTTTTACCATGGAAA+AGG | - | chr1_1:22886272-22886291 | None:intergenic | 35.0% |
| ! | AGACTAATGAGGTTTTACCA+TGG | - | chr1_1:22886278-22886297 | None:intergenic | 35.0% |
| ! | TGCCAAAAACTTGCTTATGT+GGG | + | chr1_1:22886373-22886392 | Msa0014420:CDS | 35.0% |
| AAGAACTGTCAACTCTGTAA+GGG | + | chr1_1:22886744-22886763 | Msa0014420:CDS | 35.0% | |
| AAATGAATCAGACGAAGACA+AGG | + | chr1_1:22886821-22886840 | Msa0014420:CDS | 35.0% | |
| CTCAAATTATAAAGGGTTCG+CGG | - | chr1_1:22886895-22886914 | None:intergenic | 35.0% | |
| ! | TGTTCTGATGGATGGTATAC+TGG | - | chr1_1:22883911-22883930 | None:intergenic | 40.0% |
| GTACCATATTTAGAAGCCTC+GGG | - | chr1_1:22883974-22883993 | None:intergenic | 40.0% | |
| CGTACCATATTTAGAAGCCT+CGG | - | chr1_1:22883975-22883994 | None:intergenic | 40.0% | |
| !! | GCAGAATTAGAGGCACTAAT+TGG | - | chr1_1:22884163-22884182 | None:intergenic | 40.0% |
| TTCCATTTGGAAAGCCTAAG+AGG | - | chr1_1:22884241-22884260 | None:intergenic | 40.0% | |
| ! | TAACCTTCTCTAAGAGAGGA+AGG | + | chr1_1:22884275-22884294 | Msa0014420:CDS | 40.0% |
| TTACCTTCCTCTCTTAGAGA+AGG | - | chr1_1:22884281-22884300 | None:intergenic | 40.0% | |
| ! | ATTTGAGGCCATAGCAAACA+AGG | + | chr1_1:22884408-22884427 | Msa0014420:CDS | 40.0% |
| !! | GGAAAATGCCTTGTTTGCTA+TGG | - | chr1_1:22884419-22884438 | None:intergenic | 40.0% |
| TGAAATGATACACGGAGAGA+AGG | + | chr1_1:22884498-22884517 | Msa0014420:CDS | 40.0% | |
| GAAATGATACACGGAGAGAA+GGG | + | chr1_1:22884499-22884518 | Msa0014420:CDS | 40.0% | |
| TGAGTATGGAGTGAACATTG+AGG | + | chr1_1:22884528-22884547 | Msa0014420:CDS | 40.0% | |
| GAGTATGGAGTGAACATTGA+GGG | + | chr1_1:22884529-22884548 | Msa0014420:CDS | 40.0% | |
| GAGAAAGGGAACACTAAGAA+TGG | - | chr1_1:22884644-22884663 | None:intergenic | 40.0% | |
| TTGACAGAGGAATTCCTGTA+AGG | + | chr1_1:22884766-22884785 | Msa0014420:intron | 40.0% | |
| !! | TCCTGTAAGGAAGCCATTTT+TGG | + | chr1_1:22884779-22884798 | Msa0014420:intron | 40.0% |
| TCCAAAAATGGCTTCCTTAC+AGG | - | chr1_1:22884783-22884802 | None:intergenic | 40.0% | |
| TCCAGACTAGGTTCCAAAAA+TGG | - | chr1_1:22884795-22884814 | None:intergenic | 40.0% | |
| AGCATCCCAATGTAAAGCAT+AGG | - | chr1_1:22884873-22884892 | None:intergenic | 40.0% | |
| AATTGAAAGGCTGCAGAACT+AGG | - | chr1_1:22885076-22885095 | None:intergenic | 40.0% | |
| TTAGCAGAACATGGAGAGAA+TGG | + | chr1_1:22885136-22885155 | Msa0014420:CDS | 40.0% | |
| CTTGTTACAACATGATGTGC+CGG | + | chr1_1:22885207-22885226 | Msa0014420:CDS | 40.0% | |
| !!! | CCTTTCCATTTTTCAAGCCT+AGG | - | chr1_1:22885592-22885611 | None:intergenic | 40.0% |
| CCTAGGCTTGAAAAATGGAA+AGG | + | chr1_1:22885589-22885608 | Msa0014420:intron | 40.0% | |
| GTAAACAGATTACGGAGAAC+AGG | - | chr1_1:22885663-22885682 | None:intergenic | 40.0% | |
| !! | TGGTGATTGGTTTCCATTTG+GGG | + | chr1_1:22885915-22885934 | Msa0014420:CDS | 40.0% |
| CAAAAGCAAACTCGAAGTCA+TGG | + | chr1_1:22886050-22886069 | Msa0014420:CDS | 40.0% | |
| ATGCCAGAAAGACTGTACAA+TGG | - | chr1_1:22886088-22886107 | None:intergenic | 40.0% | |
| ATGGAAAAGGCAAATTGGGT+AGG | - | chr1_1:22886259-22886278 | None:intergenic | 40.0% | |
| ! | TACCCAATTTGCCTTTTCCA+TGG | + | chr1_1:22886258-22886277 | Msa0014420:CDS | 40.0% |
| ! | GTGCCAAAAACTTGCTTATG+TGG | + | chr1_1:22886372-22886391 | Msa0014420:CDS | 40.0% |
| ! | GCCAAAAACTTGCTTATGTG+GGG | + | chr1_1:22886374-22886393 | Msa0014420:CDS | 40.0% |
| ! | CCAAAAACTTGCTTATGTGG+GGG | + | chr1_1:22886375-22886394 | Msa0014420:CDS | 40.0% |
| !!! | TGCTGCCAAAAGTTTTGAAC+AGG | + | chr1_1:22886443-22886462 | Msa0014420:CDS | 40.0% |
| GACGCATTCAATCATGCTAT+AGG | - | chr1_1:22886511-22886530 | None:intergenic | 40.0% | |
| GAAGAACTGTCAACTCTGTA+AGG | + | chr1_1:22886743-22886762 | Msa0014420:CDS | 40.0% | |
| ATACTTCTCCATCAGTGATG+AGG | + | chr1_1:22886860-22886879 | Msa0014420:CDS | 40.0% | |
| TACTTCTCCATCAGTGATGA+GGG | + | chr1_1:22886861-22886880 | Msa0014420:CDS | 40.0% | |
| GGATGGTATACTGGACATTC+TGG | - | chr1_1:22883902-22883921 | None:intergenic | 45.0% | |
| TCTACAGAAAATTGCTCCCG+AGG | + | chr1_1:22883955-22883974 | Msa0014420:CDS | 45.0% | |
| TCATAAACGCCGCGATGAAA+AGG | - | chr1_1:22884024-22884043 | None:intergenic | 45.0% | |
| AGCCTCTTAGGCTTTCCAAA+TGG | + | chr1_1:22884236-22884255 | Msa0014420:CDS | 45.0% | |
| GAGAAGGGAACAGTTGAGTA+TGG | + | chr1_1:22884514-22884533 | Msa0014420:CDS | 45.0% | |
| !!! | GCCATTTTTGGAACCTAGTC+TGG | + | chr1_1:22884791-22884810 | Msa0014420:intron | 45.0% |
| CAAGACATTAGGAGGGAACA+TGG | - | chr1_1:22885191-22885210 | None:intergenic | 45.0% | |
| !! | ACATGATGTGCCGGTTTACA+AGG | + | chr1_1:22885216-22885235 | Msa0014420:CDS | 45.0% |
| ! | TTTTGCACCGCCTTGTAAAC+CGG | - | chr1_1:22885229-22885248 | None:intergenic | 45.0% |
| AAGGTGATGACAAACTCTCC+TGG | - | chr1_1:22885253-22885272 | None:intergenic | 45.0% | |
| AACTATTAGGACTTCAGCCC+TGG | - | chr1_1:22885693-22885712 | None:intergenic | 45.0% | |
| ! | GTGCCATTGTACAGTCTTTC+TGG | + | chr1_1:22886082-22886101 | Msa0014420:CDS | 45.0% |
| CATAACAATCCCTATGGCAG+AGG | - | chr1_1:22886206-22886225 | None:intergenic | 45.0% | |
| ! | CCCCCACATAAGCAAGTTTT+TGG | - | chr1_1:22886378-22886397 | None:intergenic | 45.0% |
| ! | ATAAAGGGTTCGCGGTCTTT+TGG | - | chr1_1:22886887-22886906 | None:intergenic | 45.0% |
| GCTCCCGAGGCTTCTAAATA+TGG | + | chr1_1:22883968-22883987 | Msa0014420:CDS | 50.0% | |
| CCTCTGTCAACTAAACGCAG+CGG | - | chr1_1:22884756-22884775 | None:intergenic | 50.0% | |
| !! | TGATGTGCCGGTTTACAAGG+CGG | + | chr1_1:22885219-22885238 | Msa0014420:CDS | 50.0% |
| TACAAGGCGGTGCAAAATCC+AGG | + | chr1_1:22885232-22885251 | Msa0014420:CDS | 50.0% | |
| !! | GGAAAGGTACTTCAGCCACT+AGG | + | chr1_1:22885605-22885624 | Msa0014420:intron | 50.0% |
| CTTCAGCCACTAGGCACAAT+TGG | + | chr1_1:22885614-22885633 | Msa0014420:intron | 50.0% | |
| GTTCGACCAATTGTGCCTAG+TGG | - | chr1_1:22885623-22885642 | None:intergenic | 50.0% | |
| TTGCTTGCTTCAGCCCCAAA+TGG | - | chr1_1:22885931-22885950 | None:intergenic | 50.0% | |
| ! | CTTTTGGCCCTCATCACTGA+TGG | - | chr1_1:22886871-22886890 | None:intergenic | 50.0% |
| ACTAAACGCAGCGGAGACTG+AGG | - | chr1_1:22884747-22884766 | None:intergenic | 55.0% | |
| CCGCTGCGTTTAGTTGACAG+AGG | + | chr1_1:22884753-22884772 | Msa0014420:CDS | 55.0% | |
| TGACATGCAGCCTCTGCCAT+AGG | + | chr1_1:22886193-22886212 | Msa0014420:CDS | 55.0% | |
| GACATGCAGCCTCTGCCATA+GGG | + | chr1_1:22886194-22886213 | Msa0014420:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 22883824 | 22886924 | 22883824 | ID=Msa0014420;Name=Msa0014420 |
| chr1_1 | mRNA | 22883824 | 22886924 | 22883824 | ID=Msa0014420-mRNA-1;Parent=Msa0014420;Name=Msa0014420-mRNA-1;_AED=0.33;_eAED=0.34;_QI=0|0.12|0|1|1|1|9|0|554 |
| chr1_1 | exon | 22883824 | 22883989 | 22883824 | ID=Msa0014420-mRNA-1:exon:8026;Parent=Msa0014420-mRNA-1 |
| chr1_1 | exon | 22884140 | 22884296 | 22884140 | ID=Msa0014420-mRNA-1:exon:8027;Parent=Msa0014420-mRNA-1 |
| chr1_1 | exon | 22884390 | 22884609 | 22884390 | ID=Msa0014420-mRNA-1:exon:8028;Parent=Msa0014420-mRNA-1 |
| chr1_1 | exon | 22884729 | 22884782 | 22884729 | ID=Msa0014420-mRNA-1:exon:8029;Parent=Msa0014420-mRNA-1 |
| chr1_1 | exon | 22884858 | 22884937 | 22884858 | ID=Msa0014420-mRNA-1:exon:8030;Parent=Msa0014420-mRNA-1 |
| chr1_1 | exon | 22885027 | 22885304 | 22885027 | ID=Msa0014420-mRNA-1:exon:8031;Parent=Msa0014420-mRNA-1 |
| chr1_1 | exon | 22885881 | 22886279 | 22885881 | ID=Msa0014420-mRNA-1:exon:8032;Parent=Msa0014420-mRNA-1 |
| chr1_1 | exon | 22886367 | 22886464 | 22886367 | ID=Msa0014420-mRNA-1:exon:8033;Parent=Msa0014420-mRNA-1 |
| chr1_1 | exon | 22886712 | 22886924 | 22886712 | ID=Msa0014420-mRNA-1:exon:8034;Parent=Msa0014420-mRNA-1 |
| chr1_1 | CDS | 22883824 | 22883989 | 22883824 | ID=Msa0014420-mRNA-1:cds;Parent=Msa0014420-mRNA-1 |
| chr1_1 | CDS | 22884140 | 22884296 | 22884140 | ID=Msa0014420-mRNA-1:cds;Parent=Msa0014420-mRNA-1 |
| chr1_1 | CDS | 22884390 | 22884609 | 22884390 | ID=Msa0014420-mRNA-1:cds;Parent=Msa0014420-mRNA-1 |
| chr1_1 | CDS | 22884729 | 22884782 | 22884729 | ID=Msa0014420-mRNA-1:cds;Parent=Msa0014420-mRNA-1 |
| chr1_1 | CDS | 22884858 | 22884937 | 22884858 | ID=Msa0014420-mRNA-1:cds;Parent=Msa0014420-mRNA-1 |
| chr1_1 | CDS | 22885027 | 22885304 | 22885027 | ID=Msa0014420-mRNA-1:cds;Parent=Msa0014420-mRNA-1 |
| chr1_1 | CDS | 22885881 | 22886279 | 22885881 | ID=Msa0014420-mRNA-1:cds;Parent=Msa0014420-mRNA-1 |
| chr1_1 | CDS | 22886367 | 22886464 | 22886367 | ID=Msa0014420-mRNA-1:cds;Parent=Msa0014420-mRNA-1 |
| chr1_1 | CDS | 22886712 | 22886924 | 22886712 | ID=Msa0014420-mRNA-1:cds;Parent=Msa0014420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
