AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0015620


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0015620 MtrunA17_Chr1g0167261 83.770 382 27 2 1 382 2 348 0.0 640
Msa0015620 MtrunA17_Chr1g0166821 72.864 398 61 4 1 382 2 368 0.0 569
Msa0015620 MtrunA17_Chr1g0187571 69.114 395 71 4 1 374 2 366 0.0 538
Msa0015620 MtrunA17_Chr7g0261501 72.113 355 67 4 1 353 1 325 1.82e-180 509
Msa0015620 MtrunA17_Chr1g0183631 73.273 333 59 2 1 333 1 303 1.49e-176 499
Msa0015620 MtrunA17_Chr4g0071031 63.333 360 98 3 1 356 1 330 4.42e-165 470
Msa0015620 MtrunA17_Chr2g0329981 61.376 378 109 4 1 374 1 345 2.50e-164 469
Msa0015620 MtrunA17_Chr8g0342821 65.029 346 88 4 1 346 1 313 7.17e-161 460
Msa0015620 MtrunA17_Chr2g0299661 58.378 370 108 4 1 360 1 334 1.54e-154 444
Msa0015620 MtrunA17_Chr6g0486611 63.343 341 94 3 1 341 1 310 2.66e-154 441
Msa0015620 MtrunA17_Chr8g0390211 57.662 385 116 5 1 371 1 352 2.41e-153 439
Msa0015620 MtrunA17_Chr3g0140071 56.183 372 112 4 1 359 1 334 3.24e-145 418
Msa0015620 MtrunA17_Chr1g0146151 56.598 341 118 2 1 341 1 311 7.24e-138 399
Msa0015620 MtrunA17_Chr7g0214531 34.069 317 160 7 3 303 29 312 2.88e-49 175
Msa0015620 MtrunA17_Chr3g0140431 34.727 311 160 7 3 303 30 307 6.04e-49 174
Msa0015620 MtrunA17_Chr1g0146301 33.119 311 165 7 3 303 116 393 1.58e-46 169
Msa0015620 MtrunA17_Chr1g0213321 32.353 306 175 5 3 303 111 389 4.68e-46 167
Msa0015620 MtrunA17_Chr7g0253211 33.333 312 162 6 9 307 324 602 5.13e-46 168
Msa0015620 MtrunA17_Chr8g0340491 33.557 298 174 6 9 303 128 404 3.93e-44 162
Msa0015620 MtrunA17_Chr5g0405421 25.301 249 148 6 8 252 98 312 2.93e-12 68.2
Msa0015620 MtrunA17_Chr8g0374701 27.755 245 134 10 6 241 122 332 2.56e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0015620 AT3G23340.1 74.085 355 61 3 1 354 1 325 0.0 529
Msa0015620 AT4G14340.1 65.664 399 84 6 1 376 7 375 0.0 510
Msa0015620 AT4G14340.2 70.028 357 76 3 1 356 7 333 1.04e-179 504
Msa0015620 AT1G03930.1 68.595 363 78 3 1 357 1 333 1.05e-176 500
Msa0015620 AT3G23340.2 71.268 355 57 4 1 354 1 311 2.42e-176 498
Msa0015620 AT4G28540.1 64.583 384 96 4 1 374 5 358 1.87e-174 495
Msa0015620 AT5G44100.1 68.871 363 76 4 1 357 1 332 2.61e-174 494
Msa0015620 AT5G44100.2 68.871 363 76 4 1 357 1 332 2.61e-174 494
Msa0015620 AT5G43320.1 67.925 371 83 5 1 365 1 341 1.89e-173 492
Msa0015620 AT5G43320.2 68.681 364 79 4 1 359 1 334 2.02e-172 485
Msa0015620 AT5G43320.3 68.681 364 79 4 1 359 1 334 2.02e-172 485
Msa0015620 AT1G04440.1 62.814 398 93 6 1 377 1 364 4.00e-172 488
Msa0015620 AT4G26100.1 62.088 364 104 3 1 360 1 334 1.00e-163 466
Msa0015620 AT2G19470.1 61.789 369 99 4 1 359 1 337 3.15e-162 462
Msa0015620 AT1G72710.1 63.056 360 98 4 1 356 1 329 8.24e-162 462
Msa0015620 AT5G57015.1 64.348 345 92 3 1 344 1 315 3.13e-160 457
Msa0015620 AT4G28880.3 61.243 338 101 2 1 338 1 308 1.95e-149 429
Msa0015620 AT4G28880.2 61.243 338 101 2 1 338 1 308 1.95e-149 429
Msa0015620 AT4G28880.1 61.243 338 101 2 1 338 1 308 1.95e-149 429
Msa0015620 AT4G28880.4 61.243 338 101 2 1 338 1 308 1.95e-149 429
Msa0015620 AT4G28860.2 55.526 380 134 3 1 380 1 345 4.03e-149 427
Msa0015620 AT4G28860.1 55.526 380 134 3 1 380 1 345 1.90e-148 426
Msa0015620 AT4G08800.1 56.135 326 81 4 1 326 1 264 1.14e-124 361
Msa0015620 AT2G25760.2 35.570 298 171 7 9 303 107 386 1.55e-50 180
Msa0015620 AT2G25760.1 35.235 298 169 6 9 303 107 383 4.85e-50 179
Msa0015620 AT3G13670.1 33.119 311 179 7 3 307 129 416 2.16e-47 171
Msa0015620 AT5G18190.2 32.237 304 176 6 9 307 130 408 3.22e-45 165
Msa0015620 AT5G18190.1 32.237 304 176 6 9 307 130 408 3.22e-45 165
Msa0015620 AT3G03940.1 32.692 312 164 6 9 307 140 418 4.79e-45 165
Msa0015620 AT2G17890.1 24.096 249 151 6 8 252 107 321 1.16e-11 66.6
Msa0015620 AT3G50530.1 27.273 242 136 8 6 241 145 352 2.10e-11 65.9
Msa0015620 AT3G53570.1 24.609 256 147 6 8 244 114 342 4.06e-11 64.7
Msa0015620 AT3G53570.4 24.609 256 147 6 8 244 114 342 4.06e-11 64.7
Msa0015620 AT3G53570.2 24.609 256 147 6 8 244 114 342 4.06e-11 64.7
Msa0015620 AT3G53570.3 24.609 256 147 6 8 244 100 328 4.51e-11 64.7
Msa0015620 AT3G53570.5 24.609 256 147 6 8 244 100 328 4.51e-11 64.7

Find 79 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCATTTGGGGAGCTTTATT+TGG 0.240792 1_1:+25193703 Msa0015620:CDS
CTAAATATTGGTACCTCTAT+TGG 0.252438 1_1:-25196283 None:intergenic
GTTACGATGGATATTGTTAT+TGG 0.292524 1_1:+25193644 None:intergenic
ATATCTTAAGAAACTCTTTC+GGG 0.305643 1_1:+25196560 Msa0015620:CDS
CATATCTTAAGAAACTCTTT+CGG 0.313975 1_1:+25196559 Msa0015620:CDS
GTGATGGCTATTGACCTTCT+TGG 0.321338 1_1:+25194996 Msa0015620:CDS
GCATTTGGGGAGCTTTATTT+GGG 0.341011 1_1:+25193704 Msa0015620:CDS
TTTAAGACTGGTTTCACATT+TGG 0.346834 1_1:-25196859 None:intergenic
TTCAAGCTTGGAAGCAAACT+TGG 0.354665 1_1:+25193674 Msa0015620:CDS
AAACTTGGGAGTGGAGCATT+TGG 0.356250 1_1:+25193689 Msa0015620:CDS
TTCTTAAGATATGAATAATC+AGG 0.358182 1_1:-25196549 None:intergenic
TTTAACACTCACCTTGGAAT+TGG 0.359788 1_1:+25195912 Msa0015620:CDS
AGTTTGACTTGGTATTTGAT+TGG 0.368124 1_1:+25196702 Msa0015620:CDS
AACTTGGGAGTGGAGCATTT+GGG 0.378231 1_1:+25193690 Msa0015620:CDS
AGAAGAAATATGAATGGATA+AGG 0.378535 1_1:+25196242 Msa0015620:CDS
TCAGGAAGAAATAATGGCTC+TGG 0.388829 1_1:+25197195 Msa0015620:intron
AAAGCCCGAGAACTTTCTAA+TGG 0.388867 1_1:+25195248 Msa0015620:CDS
TGTATGAGTCTAAATTGTAT+AGG 0.392182 1_1:+25194696 Msa0015620:CDS
CAGACTGCAGCATAGGTCTT+TGG 0.407190 1_1:+25197221 Msa0015620:CDS
GAGAACTTTCTAATGGGTTC+AGG 0.413955 1_1:+25195255 Msa0015620:CDS
CAGGTGTACATTATTGACTA+TGG 0.418986 1_1:+25195565 Msa0015620:intron
AGAGGAAGTGGCTCTTAAAC+TGG 0.426091 1_1:+25193825 Msa0015620:CDS
TATGGTCCTGTGTTTAAGAC+TGG 0.431845 1_1:-25196871 None:intergenic
GTTATAGTCTTCCATGGCAT+GGG 0.446603 1_1:+25196194 Msa0015620:intron
TTAGAACTAGAACCACTTTG+TGG 0.454457 1_1:-25196740 None:intergenic
TATGAAAAGAAGAGTAAAAG+AGG 0.456252 1_1:-25194606 None:intergenic
AGGGAAAACAAGAATCTCAT+TGG 0.467420 1_1:+25195870 Msa0015620:intron
AAGCCCGAGAACTTTCTAAT+GGG 0.468302 1_1:+25195249 Msa0015620:CDS
CGTTCTAATCTCTCTTCATA+TGG 0.470694 1_1:-25196889 None:intergenic
TGAACCCATTAGAAAGTTCT+CGG 0.471922 1_1:-25195253 None:intergenic
ATTTGATTGGACTAAATTGA+AGG 0.475148 1_1:+25196715 Msa0015620:CDS
ACCGCAATGATCGACAATAG+TGG 0.481921 1_1:-25196515 None:intergenic
TGTTATAGTCTTCCATGGCA+TGG 0.485138 1_1:+25196193 Msa0015620:intron
GAAGAAATATGAATGGATAA+GGG 0.486661 1_1:+25196243 Msa0015620:CDS
ACTCCATACCACTTTATATG+AGG 0.493402 1_1:-25194957 None:intergenic
CAGGAAGAAATAATGGCTCT+GGG 0.501297 1_1:+25197196 Msa0015620:intron
TTAAATAAGTCTTCAAGACT+TGG 0.501394 1_1:-25195020 None:intergenic
CCACTTTATATGAGGTATGC+CGG 0.507981 1_1:-25194949 None:intergenic
TGCAGGTTATCAGTTTGACT+TGG 0.509022 1_1:+25196691 Msa0015620:intron
TTCAGGCAGCAAGATCAATC+AGG 0.509068 1_1:+25195272 Msa0015620:CDS
ACGATGGATATTGTTATTGG+TGG 0.510289 1_1:+25193647 None:intergenic
CGGGAACTATTCATTAGAGA+AGG 0.512534 1_1:+25196579 Msa0015620:CDS
AAAGAAGCTAACTCCAATAG+AGG 0.515041 1_1:+25196270 Msa0015620:CDS
TTGTATATTAGGTACCTGTA+TGG 0.516743 1_1:-25195631 None:intergenic
ATTGGTGGAAAATTCAAGCT+TGG 0.526484 1_1:+25193662 Msa0015620:CDS
AAAGATTGTATTTCACATGA+AGG 0.526919 1_1:-25194583 None:intergenic
CACAAAGGCACATACCATAC+AGG 0.527052 1_1:+25195617 Msa0015620:CDS
GAGAGATTAGAACGGCCTAC+AGG 0.527482 1_1:+25196898 Msa0015620:CDS
AAATTGTATAGGCTTCTTCA+AGG 0.528424 1_1:+25194707 Msa0015620:CDS
CTGGGGACAGACTGCAGCAT+AGG 0.535067 1_1:+25197214 Msa0015620:CDS
CTAAAGAGAAGAAATATGAA+TGG 0.541076 1_1:+25196236 Msa0015620:CDS
CTTCAAGACTTGGTCCAAGA+AGG 0.548592 1_1:-25195010 None:intergenic
TGTGAAAACTCAAGAGGAAG+TGG 0.550394 1_1:+25193813 Msa0015620:CDS
TGCACAAATTACCAATTCCA+AGG 0.554278 1_1:-25195923 None:intergenic
TTCATGCCGTGCCCATGCCA+TGG 0.555518 1_1:-25196205 None:intergenic
ATACCTCATATAAAGTGGTA+TGG 0.563349 1_1:+25194954 Msa0015620:CDS
CTTGGAAGCAAACTTGGGAG+TGG 0.565271 1_1:+25193680 Msa0015620:CDS
GAACCCATTAGAAAGTTCTC+GGG 0.565868 1_1:-25195252 None:intergenic
CCGGCATACCTCATATAAAG+TGG 0.567709 1_1:+25194949 Msa0015620:CDS
TCAAGCTTGGAAGCAAACTT+GGG 0.573496 1_1:+25193675 Msa0015620:CDS
TTAGACTCATACAGAAGTTG+AGG 0.573846 1_1:-25194686 None:intergenic
AGAGATGATCTAGAATCGCT+TGG 0.574171 1_1:+25196067 Msa0015620:CDS
ACTTGGGAGTGGAGCATTTG+GGG 0.577875 1_1:+25193691 Msa0015620:CDS
TATAAAGTGGTATGGAGTCG+AGG 0.580298 1_1:+25194962 Msa0015620:CDS
AGTCTTCCATGGCATGGGCA+CGG 0.583186 1_1:+25196199 Msa0015620:intron
GTGAAACCAGTCTTAAACAC+AGG 0.585633 1_1:+25196865 Msa0015620:CDS
AATCATGGAAGAACATCTGA+AGG 0.597406 1_1:-25197261 None:intergenic
TCCACTATTGTCGATCATTG+CGG 0.598884 1_1:+25196514 Msa0015620:CDS
ATAAAGTGGTATGGAGTCGA+GGG 0.602710 1_1:+25194963 Msa0015620:CDS
TGTTGATGTGAAAACTCAAG+AGG 0.614137 1_1:+25193807 Msa0015620:CDS
AAATATGACGTGAACTCTGT+TGG 0.622690 1_1:-25196492 None:intergenic
CGAGGGTGACTACAATGTGA+TGG 0.626100 1_1:+25194980 Msa0015620:CDS
GTAGCGTATATGCACTATCG+TGG 0.653910 1_1:+25195207 Msa0015620:CDS
ATTGTGATCTTAAAACACAA+AGG 0.669161 1_1:+25195602 Msa0015620:CDS
TTGTATAGGCTTCTTCAAGG+AGG 0.676548 1_1:+25194710 Msa0015620:CDS
AAATTGAAGGATCCACAAAG+TGG 0.696056 1_1:+25196728 Msa0015620:CDS
ACATCTGAAGGTGCATACGA+CGG 0.698148 1_1:-25197249 None:intergenic
AGGAAGAAATAATGGCTCTG+GGG 0.722212 1_1:+25197197 Msa0015620:intron
CATATGAAGAGAGATTAGAA+CGG 0.732307 1_1:+25196890 Msa0015620:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATTAATTTATTATAAA+TGG + chr1_1:25196662-25196681 Msa0015620:intron 0.0%
!! TTTCTTAAAATTAAACATTA+AGG - chr1_1:25195111-25195130 None:intergenic 10.0%
!! AAATCATAAAATTTAACATA+AGG - chr1_1:25195531-25195550 None:intergenic 10.0%
!! TTTAATTAAACTAAAGATTT+GGG - chr1_1:25196389-25196408 None:intergenic 10.0%
!! ATTTAATTAAACTAAAGATT+TGG - chr1_1:25196390-25196409 None:intergenic 10.0%
!!! AAATTTTTAATTTCTTAAAC+AGG + chr1_1:25196452-25196471 Msa0015620:intron 10.0%
!!! CTAATAAATTTTATTTTAGT+CGG + chr1_1:25197122-25197141 Msa0015620:intron 10.0%
!!! TATGTTTTCTTTGAATAATT+TGG + chr1_1:25193768-25193787 Msa0015620:intron 15.0%
!! AATGTGTATGAAAATAATTA+TGG - chr1_1:25195805-25195824 None:intergenic 15.0%
!! TTAATTAAACTAAAGATTTG+GGG - chr1_1:25196388-25196407 None:intergenic 15.0%
!! ATTTATTAAATTATCAGCAT+AGG - chr1_1:25196975-25196994 None:intergenic 15.0%
!! TATGCTGATAATTTAATAAA+TGG + chr1_1:25196974-25196993 Msa0015620:intron 15.0%
!! CGACTAAAATAAAATTTATT+AGG - chr1_1:25197124-25197143 None:intergenic 15.0%
!!! ATCTAAAACATTGGAATTTA+GGG - chr1_1:25194096-25194115 None:intergenic 20.0%
!!! TATCTAAAACATTGGAATTT+AGG - chr1_1:25194097-25194116 None:intergenic 20.0%
!!! TTTCACTATATCTAAAACAT+TGG - chr1_1:25194105-25194124 None:intergenic 20.0%
!!! CATTTTCCAATTAGTATTTA+CGG + chr1_1:25194164-25194183 Msa0015620:intron 20.0%
!!! GTTGTGTTATTTTATTGAAA+GGG - chr1_1:25194409-25194428 None:intergenic 20.0%
!!! TGTTGTGTTATTTTATTGAA+AGG - chr1_1:25194410-25194429 None:intergenic 20.0%
!!! TCTTTTTTCTACATTTTCAT+TGG + chr1_1:25194634-25194653 Msa0015620:CDS 20.0%
!! CATTAAATACTCAAACTATT+AGG - chr1_1:25194910-25194929 None:intergenic 20.0%
!! TCTTGCATTTAATGTAATTT+AGG + chr1_1:25195312-25195331 Msa0015620:intron 20.0%
!! GATTTCCATTTAATTATTAC+AGG + chr1_1:25195546-25195565 Msa0015620:intron 20.0%
!!! ACCTAATATACAATTTTGTT+TGG + chr1_1:25195641-25195660 Msa0015620:intron 20.0%
!!! CCTAATATACAATTTTGTTT+GGG + chr1_1:25195642-25195661 Msa0015620:intron 20.0%
!!! AATTTTCAACAGATGAAATT+TGG - chr1_1:25196437-25196456 None:intergenic 20.0%
!! TTCTTAAGATATGAATAATC+AGG - chr1_1:25196552-25196571 None:intergenic 20.0%
!!! TTTATAACTATCACAAGTTT+TGG + chr1_1:25196921-25196940 Msa0015620:intron 20.0%
!! ATGCATATTATTTAAACAAG+TGG - chr1_1:25197021-25197040 None:intergenic 20.0%
!!! TGTTATTTTAATTCTAGGAT+AGG + chr1_1:25197067-25197086 Msa0015620:intron 20.0%
!! TGTACCATGATTTTAAATTG+CGG + chr1_1:25193982-25194001 Msa0015620:intron 25.0%
! AACACAACATATTTACTTGT+CGG + chr1_1:25194421-25194440 Msa0015620:intron 25.0%
! AAAGATTGTATTTCACATGA+AGG - chr1_1:25194586-25194605 None:intergenic 25.0%
! TATGAAAAGAAGAGTAAAAG+AGG - chr1_1:25194609-25194628 None:intergenic 25.0%
! TGTATGAGTCTAAATTGTAT+AGG + chr1_1:25194696-25194715 Msa0015620:CDS 25.0%
!!! CAATTTGTTTTATTTCCACT+AGG - chr1_1:25194819-25194838 None:intergenic 25.0%
!!! TGCTAATTTTTATTTGAAGC+CGG + chr1_1:25194930-25194949 Msa0015620:intron 25.0%
! TTAAATAAGTCTTCAAGACT+TGG - chr1_1:25195023-25195042 None:intergenic 25.0%
!!! AAGCATCAATACTGTTTTTA+AGG - chr1_1:25195066-25195085 None:intergenic 25.0%
! TTTGCTTCATGCTAAAAATA+TGG - chr1_1:25195135-25195154 None:intergenic 25.0%
!!! CATGAAGCAAAAGTATTTTA+CGG + chr1_1:25195144-25195163 Msa0015620:intron 25.0%
! ATCTGTTGTCTGATTATATT+TGG + chr1_1:25195402-25195421 Msa0015620:intron 25.0%
! TCCTATTTCAAATACAAGAA+TGG + chr1_1:25195451-25195470 Msa0015620:intron 25.0%
!! TCCATTCTTGTATTTGAAAT+AGG - chr1_1:25195455-25195474 None:intergenic 25.0%
! TTCAAATACAAGAATGGAAA+AGG + chr1_1:25195457-25195476 Msa0015620:intron 25.0%
! TGGAAGTAGAAAAATACAAA+CGG + chr1_1:25195493-25195512 Msa0015620:intron 25.0%
! AATTTAACATAAGGCCTATA+TGG - chr1_1:25195522-25195541 None:intergenic 25.0%
! GTACACCTGTAATAATTAAA+TGG - chr1_1:25195554-25195573 None:intergenic 25.0%
! ATTGTGATCTTAAAACACAA+AGG + chr1_1:25195602-25195621 Msa0015620:CDS 25.0%
! CCCAAACAAAATTGTATATT+AGG - chr1_1:25195645-25195664 None:intergenic 25.0%
! ACTTAAATGTAACTGTAGAA+AGG - chr1_1:25195684-25195703 None:intergenic 25.0%
! AAGTTGAAACAAAACGTAAA+GGG - chr1_1:25195740-25195759 None:intergenic 25.0%
! AAAGTTGAAACAAAACGTAA+AGG - chr1_1:25195741-25195760 None:intergenic 25.0%
!!! TTTTGTTTCAACTTTAAAGC+TGG + chr1_1:25195746-25195765 Msa0015620:intron 25.0%
!!! AATTTTGTTATAGTCTTCCA+TGG + chr1_1:25196188-25196207 Msa0015620:intron 25.0%
! CTAAAGAGAAGAAATATGAA+TGG + chr1_1:25196236-25196255 Msa0015620:CDS 25.0%
! AGAAGAAATATGAATGGATA+AGG + chr1_1:25196242-25196261 Msa0015620:CDS 25.0%
! GAAGAAATATGAATGGATAA+GGG + chr1_1:25196243-25196262 Msa0015620:CDS 25.0%
! AGCTTCTTGAAACTAAATAT+TGG - chr1_1:25196298-25196317 None:intergenic 25.0%
! AACATGATGCAGAAAAATAA+GGG - chr1_1:25196347-25196366 None:intergenic 25.0%
! AAACATGATGCAGAAAAATA+AGG - chr1_1:25196348-25196367 None:intergenic 25.0%
! CATATCTTAAGAAACTCTTT+CGG + chr1_1:25196559-25196578 Msa0015620:CDS 25.0%
! ATATCTTAAGAAACTCTTTC+GGG + chr1_1:25196560-25196579 Msa0015620:CDS 25.0%
!! TTTGCAAGAATTTTCAAATG+AGG - chr1_1:25196638-25196657 None:intergenic 25.0%
! ATTTGATTGGACTAAATTGA+AGG + chr1_1:25196715-25196734 Msa0015620:CDS 25.0%
!!! GTTGGTGTTATTTTAATTCT+AGG + chr1_1:25197062-25197081 Msa0015620:intron 25.0%
! AATTTGGACTTGTTTGTTTC+AGG + chr1_1:25193784-25193803 Msa0015620:intron 30.0%
! CGTCTAAAATATTGTTGATG+CGG + chr1_1:25194021-25194040 Msa0015620:intron 30.0%
TTTGGTCCGTAAATACTAAT+TGG - chr1_1:25194173-25194192 None:intergenic 30.0%
GTGTATAGGTATATGTGTAT+GGG - chr1_1:25194378-25194397 None:intergenic 30.0%
TGTGTATAGGTATATGTGTA+TGG - chr1_1:25194379-25194398 None:intergenic 30.0%
!!! TGTTATTTTATTGAAAGGGC+AGG - chr1_1:25194405-25194424 None:intergenic 30.0%
ACACAACATATTTACTTGTC+GGG + chr1_1:25194422-25194441 Msa0015620:intron 30.0%
AAATTGTATAGGCTTCTTCA+AGG + chr1_1:25194707-25194726 Msa0015620:CDS 30.0%
CCGCTTATTAACAAAATTGT+CGG - chr1_1:25194779-25194798 None:intergenic 30.0%
! CCGACAATTTTGTTAATAAG+CGG + chr1_1:25194776-25194795 Msa0015620:intron 30.0%
ATACCTCATATAAAGTGGTA+TGG + chr1_1:25194954-25194973 Msa0015620:CDS 30.0%
CGTCAAATAGTAAACATTGA+AGG - chr1_1:25195175-25195194 None:intergenic 30.0%
TCTTTGAACTTGAAAAATGC+TGG - chr1_1:25195382-25195401 None:intergenic 30.0%
! GAAAAGGTCACTTTGTTAAA+TGG + chr1_1:25195473-25195492 Msa0015620:intron 30.0%
AATACAAACGGAAACCATAT+AGG + chr1_1:25195505-25195524 Msa0015620:intron 30.0%
!!! GATCACAATACTTTTTTGCA+AGG - chr1_1:25195591-25195610 None:intergenic 30.0%
TTGTATATTAGGTACCTGTA+TGG - chr1_1:25195634-25195653 None:intergenic 30.0%
GTAAAGGGAACAAAATACAA+AGG - chr1_1:25195725-25195744 None:intergenic 30.0%
!! GTACTAATGTACTTTTTGAG+AGG + chr1_1:25196094-25196113 Msa0015620:CDS 30.0%
!! TAATGTACTTTTTGAGAGGA+AGG + chr1_1:25196098-25196117 Msa0015620:CDS 30.0%
AATGTATAATGACGAGTACA+AGG - chr1_1:25196153-25196172 None:intergenic 30.0%
CTAAATATTGGTACCTCTAT+TGG - chr1_1:25196286-25196305 None:intergenic 30.0%
! TAGTTTCAAGAAGCTCTTTT+AGG + chr1_1:25196303-25196322 Msa0015620:intron 30.0%
CTAAAGATTTGGGGATTAAA+AGG - chr1_1:25196379-25196398 None:intergenic 30.0%
!! AGTTTGACTTGGTATTTGAT+TGG + chr1_1:25196702-25196721 Msa0015620:CDS 30.0%
!! TTTAAGACTGGTTTCACATT+TGG - chr1_1:25196862-25196881 None:intergenic 30.0%
CATATGAAGAGAGATTAGAA+CGG + chr1_1:25196890-25196909 Msa0015620:CDS 30.0%
TGTGATAGTTATAAACCTGT+AGG - chr1_1:25196916-25196935 None:intergenic 30.0%
TATATGATACACTGCAAAGT+TGG + chr1_1:25197044-25197063 Msa0015620:intron 30.0%
TTTGAAAAGTCGTTGATCAT+AGG + chr1_1:25197092-25197111 Msa0015620:intron 30.0%
!! GCATTTTCAGGAAGAAATAA+TGG + chr1_1:25197189-25197208 Msa0015620:intron 30.0%
ATTGGTGGAAAATTCAAGCT+TGG + chr1_1:25193662-25193681 Msa0015620:CDS 35.0%
TGTTGATGTGAAAACTCAAG+AGG + chr1_1:25193807-25193826 Msa0015620:CDS 35.0%
TGTCACTCCAATTTCTATGT+AGG + chr1_1:25193871-25193890 Msa0015620:intron 35.0%
GTCACTCCAATTTCTATGTA+GGG + chr1_1:25193872-25193891 Msa0015620:intron 35.0%
! CCATGATTTTAAATTGCGGT+CGG + chr1_1:25193986-25194005 Msa0015620:intron 35.0%
CTAAAATATTGTTGATGCGG+TGG + chr1_1:25194024-25194043 Msa0015620:intron 35.0%
CAAAGTTCACATCGCAATTA+CGG - chr1_1:25194070-25194089 None:intergenic 35.0%
CAAAGTCAGACTCTACTATA+GGG + chr1_1:25194189-25194208 Msa0015620:intron 35.0%
! TTAAATTGCGGTTCTAGTCA+CGG - chr1_1:25194341-25194360 None:intergenic 35.0%
! TACATTTTCATTGGCATCTC+AGG + chr1_1:25194643-25194662 Msa0015620:CDS 35.0%
TTAGACTCATACAGAAGTTG+AGG - chr1_1:25194689-25194708 None:intergenic 35.0%
ACTCCATACCACTTTATATG+AGG - chr1_1:25194960-25194979 None:intergenic 35.0%
TGAACCCATTAGAAAGTTCT+CGG - chr1_1:25195256-25195275 None:intergenic 35.0%
ATTTAGGCACGTATCTTCTA+AGG + chr1_1:25195328-25195347 Msa0015620:intron 35.0%
GGTGATAGATGTGTAAGTTA+TGG - chr1_1:25195361-25195380 None:intergenic 35.0%
! CAGGTGTACATTATTGACTA+TGG + chr1_1:25195565-25195584 Msa0015620:intron 35.0%
CTGTAGAAAGGAAAACAAGT+TGG - chr1_1:25195672-25195691 None:intergenic 35.0%
! TGCAATGTTTTACTCTCAAC+AGG + chr1_1:25195850-25195869 Msa0015620:intron 35.0%
! GCAATGTTTTACTCTCAACA+GGG + chr1_1:25195851-25195870 Msa0015620:intron 35.0%
AGGGAAAACAAGAATCTCAT+TGG + chr1_1:25195870-25195889 Msa0015620:intron 35.0%
TTTAACACTCACCTTGGAAT+TGG + chr1_1:25195912-25195931 Msa0015620:CDS 35.0%
TGCACAAATTACCAATTCCA+AGG - chr1_1:25195926-25195945 None:intergenic 35.0%
AAAGAAGCTAACTCCAATAG+AGG + chr1_1:25196270-25196289 Msa0015620:CDS 35.0%
AAATATGACGTGAACTCTGT+TGG - chr1_1:25196495-25196514 None:intergenic 35.0%
! ATTATAAATGGCGCTTTTGC+AGG + chr1_1:25196674-25196693 Msa0015620:intron 35.0%
AAATTGAAGGATCCACAAAG+TGG + chr1_1:25196728-25196747 Msa0015620:CDS 35.0%
TTAGAACTAGAACCACTTTG+TGG - chr1_1:25196743-25196762 None:intergenic 35.0%
CGTTCTAATCTCTCTTCATA+TGG - chr1_1:25196892-25196911 None:intergenic 35.0%
GAGATTCGAGATAGATTATG+AGG + chr1_1:25197156-25197175 Msa0015620:intron 35.0%
ATAGATTATGAGGTGAGGTT+GGG + chr1_1:25197166-25197185 Msa0015620:intron 35.0%
TTCAAGCTTGGAAGCAAACT+TGG + chr1_1:25193674-25193693 Msa0015620:CDS 40.0%
TCAAGCTTGGAAGCAAACTT+GGG + chr1_1:25193675-25193694 Msa0015620:CDS 40.0%
!! AGCATTTGGGGAGCTTTATT+TGG + chr1_1:25193703-25193722 Msa0015620:CDS 40.0%
!! GCATTTGGGGAGCTTTATTT+GGG + chr1_1:25193704-25193723 Msa0015620:CDS 40.0%
TGTGAAAACTCAAGAGGAAG+TGG + chr1_1:25193813-25193832 Msa0015620:CDS 40.0%
ACTGGTGAGTGAAGTTGTTA+TGG + chr1_1:25193843-25193862 Msa0015620:intron 40.0%
CTCCAATTTCTATGTAGGGA+TGG + chr1_1:25193876-25193895 Msa0015620:intron 40.0%
! TTTTGTCCAACTACGTGCAA+GGG - chr1_1:25193941-25193960 None:intergenic 40.0%
! ATTTTGTCCAACTACGTGCA+AGG - chr1_1:25193942-25193961 None:intergenic 40.0%
GCACGTAGTTGGACAAAATA+TGG + chr1_1:25193943-25193962 Msa0015620:intron 40.0%
! CCGACCGCAATTTAAAATCA+TGG - chr1_1:25193989-25194008 None:intergenic 40.0%
CCTATAGTAGAGTCTGACTT+TGG - chr1_1:25194191-25194210 None:intergenic 40.0%
CCAAAGTCAGACTCTACTAT+AGG + chr1_1:25194188-25194207 Msa0015620:intron 40.0%
GTGACTAGAACCGCAATTTA+AGG + chr1_1:25194340-25194359 Msa0015620:intron 40.0%
! AGAGTCATGGCCTTAAATTG+CGG - chr1_1:25194353-25194372 None:intergenic 40.0%
ATGTGTATGGGTAAGAGTCA+TGG - chr1_1:25194366-25194385 None:intergenic 40.0%
TTGTATAGGCTTCTTCAAGG+AGG + chr1_1:25194710-25194729 Msa0015620:CDS 40.0%
TGCATGAAAAGAAGCTGAAC+AGG - chr1_1:25194755-25194774 None:intergenic 40.0%
CCACTTTATATGAGGTATGC+CGG - chr1_1:25194952-25194971 None:intergenic 40.0%
TATAAAGTGGTATGGAGTCG+AGG + chr1_1:25194962-25194981 Msa0015620:CDS 40.0%
ATAAAGTGGTATGGAGTCGA+GGG + chr1_1:25194963-25194982 Msa0015620:CDS 40.0%
AAAGCCCGAGAACTTTCTAA+TGG + chr1_1:25195248-25195267 Msa0015620:CDS 40.0%
AAGCCCGAGAACTTTCTAAT+GGG + chr1_1:25195249-25195268 Msa0015620:CDS 40.0%
GAACCCATTAGAAAGTTCTC+GGG - chr1_1:25195255-25195274 None:intergenic 40.0%
!! GAGAACTTTCTAATGGGTTC+AGG + chr1_1:25195255-25195274 Msa0015620:CDS 40.0%
TTCCACTGATGTTGCATGAA+TGG + chr1_1:25195826-25195845 Msa0015620:intron 40.0%
!! GCAAGTTTTAACACTCACCT+TGG + chr1_1:25195906-25195925 Msa0015620:CDS 40.0%
! AGAGATGATCTAGAATCGCT+TGG + chr1_1:25196067-25196086 Msa0015620:CDS 40.0%
!! GTACTTTTTGAGAGGAAGGT+TGG + chr1_1:25196102-25196121 Msa0015620:intron 40.0%
!! TTTTTGAGAGGAAGGTTGGT+TGG + chr1_1:25196106-25196125 Msa0015620:intron 40.0%
TGTTATAGTCTTCCATGGCA+TGG + chr1_1:25196193-25196212 Msa0015620:intron 40.0%
GTTATAGTCTTCCATGGCAT+GGG + chr1_1:25196194-25196213 Msa0015620:intron 40.0%
TCCACTATTGTCGATCATTG+CGG + chr1_1:25196514-25196533 Msa0015620:CDS 40.0%
CGGGAACTATTCATTAGAGA+AGG + chr1_1:25196579-25196598 Msa0015620:CDS 40.0%
TGCAGGTTATCAGTTTGACT+TGG + chr1_1:25196691-25196710 Msa0015620:intron 40.0%
GTGAAACCAGTCTTAAACAC+AGG + chr1_1:25196865-25196884 Msa0015620:CDS 40.0%
! TATGGTCCTGTGTTTAAGAC+TGG - chr1_1:25196874-25196893 None:intergenic 40.0%
TCGAGATAGATTATGAGGTG+AGG + chr1_1:25197161-25197180 Msa0015620:intron 40.0%
GATAGATTATGAGGTGAGGT+TGG + chr1_1:25197165-25197184 Msa0015620:intron 40.0%
TAGATTATGAGGTGAGGTTG+GGG + chr1_1:25197167-25197186 Msa0015620:intron 40.0%
TCAGGAAGAAATAATGGCTC+TGG + chr1_1:25197195-25197214 Msa0015620:intron 40.0%
CAGGAAGAAATAATGGCTCT+GGG + chr1_1:25197196-25197215 Msa0015620:intron 40.0%
! AGGAAGAAATAATGGCTCTG+GGG + chr1_1:25197197-25197216 Msa0015620:intron 40.0%
! AAACTTGGGAGTGGAGCATT+TGG + chr1_1:25193689-25193708 Msa0015620:CDS 45.0%
! AACTTGGGAGTGGAGCATTT+GGG + chr1_1:25193690-25193709 Msa0015620:CDS 45.0%
AGAGGAAGTGGCTCTTAAAC+TGG + chr1_1:25193825-25193844 Msa0015620:CDS 45.0%
CGCCATCCCTACATAGAAAT+TGG - chr1_1:25193881-25193900 None:intergenic 45.0%
TTTCTATGTAGGGATGGCGA+TGG + chr1_1:25193882-25193901 Msa0015620:intron 45.0%
TTCTATGTAGGGATGGCGAT+GGG + chr1_1:25193883-25193902 Msa0015620:intron 45.0%
TTTGTCCAACTACGTGCAAG+GGG - chr1_1:25193940-25193959 None:intergenic 45.0%
AAAGGGCAGGTGATGTGTAT+AGG - chr1_1:25194392-25194411 None:intergenic 45.0%
CCGGCATACCTCATATAAAG+TGG + chr1_1:25194949-25194968 Msa0015620:CDS 45.0%
GTGATGGCTATTGACCTTCT+TGG + chr1_1:25194996-25195015 Msa0015620:CDS 45.0%
! CTTCAAGACTTGGTCCAAGA+AGG - chr1_1:25195013-25195032 None:intergenic 45.0%
GTAGCGTATATGCACTATCG+TGG + chr1_1:25195207-25195226 Msa0015620:CDS 45.0%
TTCAGGCAGCAAGATCAATC+AGG + chr1_1:25195272-25195291 Msa0015620:CDS 45.0%
! CACAAAGGCACATACCATAC+AGG + chr1_1:25195617-25195636 Msa0015620:CDS 45.0%
AGCCATTCATGCAACATCAG+TGG - chr1_1:25195831-25195850 None:intergenic 45.0%
ACCGCAATGATCGACAATAG+TGG - chr1_1:25196518-25196537 None:intergenic 45.0%
! ACATCTGAAGGTGCATACGA+CGG - chr1_1:25197252-25197271 None:intergenic 45.0%
!! TACAAAATATTATTAAATAT+TGG + chr1_1:25194864-25194883 Msa0015620:intron 5.0%
!!! AATTTCTTATTTAAATAAAT+TGG + chr1_1:25195996-25196015 Msa0015620:intron 5.0%
CTTGGAAGCAAACTTGGGAG+TGG + chr1_1:25193680-25193699 Msa0015620:CDS 50.0%
! ACTTGGGAGTGGAGCATTTG+GGG + chr1_1:25193691-25193710 Msa0015620:CDS 50.0%
TTACGGTGCCTTTGCGGTTA+CGG - chr1_1:25194053-25194072 None:intergenic 50.0%
TCGCAATTACGGTGCCTTTG+CGG - chr1_1:25194059-25194078 None:intergenic 50.0%
CACTGATGCGACTCGCATTA+AGG - chr1_1:25194291-25194310 None:intergenic 50.0%
! ATAGCAGAGCTCTAGCCTAG+TGG + chr1_1:25194801-25194820 Msa0015620:intron 50.0%
CGAGGGTGACTACAATGTGA+TGG + chr1_1:25194980-25194999 Msa0015620:CDS 50.0%
GAGAGATTAGAACGGCCTAC+AGG + chr1_1:25196898-25196917 Msa0015620:CDS 50.0%
CAGACTGCAGCATAGGTCTT+TGG + chr1_1:25197221-25197240 Msa0015620:CDS 50.0%
ATGTAGGGATGGCGATGGGT+AGG + chr1_1:25193887-25193906 Msa0015620:intron 55.0%
TGTAGGGATGGCGATGGGTA+GGG + chr1_1:25193888-25193907 Msa0015620:intron 55.0%
! GATGGCGATGGGTAGGGTTT+TGG + chr1_1:25193894-25193913 Msa0015620:intron 55.0%
TCTGTCCCCTTGCACGTAGT+TGG + chr1_1:25193932-25193951 Msa0015620:intron 55.0%
AGTCTTCCATGGCATGGGCA+CGG + chr1_1:25196199-25196218 Msa0015620:intron 55.0%
!! GGTGAGGTTGGGGCATTTTC+AGG + chr1_1:25197177-25197196 Msa0015620:intron 55.0%
CTACGTGCAAGGGGACAGAC+AGG - chr1_1:25193931-25193950 None:intergenic 60.0%
TTCATGCCGTGCCCATGCCA+TGG - chr1_1:25196208-25196227 None:intergenic 60.0%
CTGGGGACAGACTGCAGCAT+AGG + chr1_1:25197214-25197233 Msa0015620:CDS 60.0%
GGTGGCCACCGTAACCGCAA+AGG + chr1_1:25194042-25194061 Msa0015620:intron 65.0%
CGGTGCCTTTGCGGTTACGG+TGG - chr1_1:25194050-25194069 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 25193650 25197281 25193650 ID=Msa0015620;Name=Msa0015620
chr1_1 mRNA 25193650 25197281 25193650 ID=Msa0015620-mRNA-1;Parent=Msa0015620;Name=Msa0015620-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0|0|1|0.91|0.84|13|0|382
chr1_1 exon 25193650 25193725 25193650 ID=Msa0015620-mRNA-1:exon:8730;Parent=Msa0015620-mRNA-1
chr1_1 exon 25193806 25193846 25193806 ID=Msa0015620-mRNA-1:exon:8731;Parent=Msa0015620-mRNA-1
chr1_1 exon 25194581 25194734 25194581 ID=Msa0015620-mRNA-1:exon:8732;Parent=Msa0015620-mRNA-1
chr1_1 exon 25194949 25195097 25194949 ID=Msa0015620-mRNA-1:exon:8733;Parent=Msa0015620-mRNA-1
chr1_1 exon 25195198 25195293 25195198 ID=Msa0015620-mRNA-1:exon:8734;Parent=Msa0015620-mRNA-1
chr1_1 exon 25195568 25195638 25195568 ID=Msa0015620-mRNA-1:exon:8735;Parent=Msa0015620-mRNA-1
chr1_1 exon 25195872 25195933 25195872 ID=Msa0015620-mRNA-1:exon:8736;Parent=Msa0015620-mRNA-1
chr1_1 exon 25196056 25196119 25196056 ID=Msa0015620-mRNA-1:exon:8737;Parent=Msa0015620-mRNA-1
chr1_1 exon 25196201 25196291 25196201 ID=Msa0015620-mRNA-1:exon:8738;Parent=Msa0015620-mRNA-1
chr1_1 exon 25196474 25196600 25196474 ID=Msa0015620-mRNA-1:exon:8739;Parent=Msa0015620-mRNA-1
chr1_1 exon 25196696 25196769 25196696 ID=Msa0015620-mRNA-1:exon:8740;Parent=Msa0015620-mRNA-1
chr1_1 exon 25196859 25196919 25196859 ID=Msa0015620-mRNA-1:exon:8741;Parent=Msa0015620-mRNA-1
chr1_1 exon 25197199 25197281 25197199 ID=Msa0015620-mRNA-1:exon:8742;Parent=Msa0015620-mRNA-1
chr1_1 CDS 25193650 25193725 25193650 ID=Msa0015620-mRNA-1:cds;Parent=Msa0015620-mRNA-1
chr1_1 CDS 25193806 25193846 25193806 ID=Msa0015620-mRNA-1:cds;Parent=Msa0015620-mRNA-1
chr1_1 CDS 25194581 25194734 25194581 ID=Msa0015620-mRNA-1:cds;Parent=Msa0015620-mRNA-1
chr1_1 CDS 25194949 25195097 25194949 ID=Msa0015620-mRNA-1:cds;Parent=Msa0015620-mRNA-1
chr1_1 CDS 25195198 25195293 25195198 ID=Msa0015620-mRNA-1:cds;Parent=Msa0015620-mRNA-1
chr1_1 CDS 25195568 25195638 25195568 ID=Msa0015620-mRNA-1:cds;Parent=Msa0015620-mRNA-1
chr1_1 CDS 25195872 25195933 25195872 ID=Msa0015620-mRNA-1:cds;Parent=Msa0015620-mRNA-1
chr1_1 CDS 25196056 25196119 25196056 ID=Msa0015620-mRNA-1:cds;Parent=Msa0015620-mRNA-1
chr1_1 CDS 25196201 25196291 25196201 ID=Msa0015620-mRNA-1:cds;Parent=Msa0015620-mRNA-1
chr1_1 CDS 25196474 25196600 25196474 ID=Msa0015620-mRNA-1:cds;Parent=Msa0015620-mRNA-1
chr1_1 CDS 25196696 25196769 25196696 ID=Msa0015620-mRNA-1:cds;Parent=Msa0015620-mRNA-1
chr1_1 CDS 25196859 25196919 25196859 ID=Msa0015620-mRNA-1:cds;Parent=Msa0015620-mRNA-1
chr1_1 CDS 25197199 25197281 25197199 ID=Msa0015620-mRNA-1:cds;Parent=Msa0015620-mRNA-1
Gene Sequence

>Msa0015620

ATGGATATTGTTATTGGTGGAAAATTCAAGCTTGGAAGCAAACTTGGGAGTGGAGCATTTGGGGAGCTTTATTTGGGTGTTGATGTGAAAACTCAAGAGGAAGTGGCTCTTAAACTGATCCTTCATGTGAAATACAATCTTTCCTCTTTTACTCTTCTTTTCATAATCACTCTTTTTTCTACATTTTCATTGGCATCTCAGGAACATGTGAAGACAAAGCATCCTCAACTTCTGTATGAGTCTAAATTGTATAGGCTTCTTCAAGGAGGAACCGGCATACCTCATATAAAGTGGTATGGAGTCGAGGGTGACTACAATGTGATGGCTATTGACCTTCTTGGACCAAGTCTTGAAGACTTATTTAACTATTGCAATAGAAAATTCTCCTTAAAAACAGTATTGATGCTTGCTGATCAACTAATAAACAGAGTAGCGTATATGCACTATCGTGGATTTCTGCATCGTGATGTAAAGCCCGAGAACTTTCTAATGGGTTCAGGCAGCAAGATCAATCAGGTGTACATTATTGACTATGGCCTTGCAAAAAAGTATTGTGATCTTAAAACACAAAGGCACATACCATACAGGGAAAACAAGAATCTCATTGGAACTGCTCAATATGCAAGTTTTAACACTCACCTTGGAATTGAACAAAGTAGAAGAGATGATCTAGAATCGCTTGGTTATGTACTAATGTACTTTTTGAGAGGAAGTCTTCCATGGCATGGGCACGGCATGAAAGCTGTCACTAAAGAGAAGAAATATGAATGGATAAGGGAAAAAAAGAAGCTAACTCCAATAGAGGTCTTGTGCAAGTCACATCCAACAGAGTTCACGTCATATTTCCACTATTGTCGATCATTGCGGTTTGAAGATAAACCTGATTATTCATATCTTAAGAAACTCTTTCGGGAACTATTCATTAGAGAAGGTTATCAGTTTGACTTGGTATTTGATTGGACTAAATTGAAGGATCCACAAAGTGGTTCTAGTTCTAAAACAAGTCCAAATGTGAAACCAGTCTTAAACACAGGACCATATGAAGAGAGATTAGAACGGCCTACAGGAAGAAATAATGGCTCTGGGGACAGACTGCAGCATAGGTCTTTGGCAGATCCGTCGTATGCACCTTCAGATGTTCTTCCATGA

Protein sequence

>Msa0015620

MDIVIGGKFKLGSKLGSGAFGELYLGVDVKTQEEVALKLILHVKYNLSSFTLLFIITLFSTFSLASQEHVKTKHPQLLYESKLYRLLQGGTGIPHIKWYGVEGDYNVMAIDLLGPSLEDLFNYCNRKFSLKTVLMLADQLINRVAYMHYRGFLHRDVKPENFLMGSGSKINQVYIIDYGLAKKYCDLKTQRHIPYRENKNLIGTAQYASFNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWHGHGMKAVTKEKKYEWIREKKKLTPIEVLCKSHPTEFTSYFHYCRSLRFEDKPDYSYLKKLFRELFIREGYQFDLVFDWTKLKDPQSGSSSKTSPNVKPVLNTGPYEERLERPTGRNNGSGDRLQHRSLADPSYAPSDVLP*