Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0015620 | KEH15799.1 | 84.962 | 399 | 15 | 2 | 1 | 382 | 1 | 371 | 0.0 | 680 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0015620 | sp|Q9LW62|CKL10_ARATH | 74.085 | 355 | 61 | 3 | 1 | 354 | 1 | 325 | 0.0 | 529 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0015620 | MtrunA17_Chr1g0167261 | 83.770 | 382 | 27 | 2 | 1 | 382 | 2 | 348 | 0.0 | 640 |
| Msa0015620 | MtrunA17_Chr1g0166821 | 72.864 | 398 | 61 | 4 | 1 | 382 | 2 | 368 | 0.0 | 569 |
| Msa0015620 | MtrunA17_Chr1g0187571 | 69.114 | 395 | 71 | 4 | 1 | 374 | 2 | 366 | 0.0 | 538 |
| Msa0015620 | MtrunA17_Chr7g0261501 | 72.113 | 355 | 67 | 4 | 1 | 353 | 1 | 325 | 1.82e-180 | 509 |
| Msa0015620 | MtrunA17_Chr1g0183631 | 73.273 | 333 | 59 | 2 | 1 | 333 | 1 | 303 | 1.49e-176 | 499 |
| Msa0015620 | MtrunA17_Chr4g0071031 | 63.333 | 360 | 98 | 3 | 1 | 356 | 1 | 330 | 4.42e-165 | 470 |
| Msa0015620 | MtrunA17_Chr2g0329981 | 61.376 | 378 | 109 | 4 | 1 | 374 | 1 | 345 | 2.50e-164 | 469 |
| Msa0015620 | MtrunA17_Chr8g0342821 | 65.029 | 346 | 88 | 4 | 1 | 346 | 1 | 313 | 7.17e-161 | 460 |
| Msa0015620 | MtrunA17_Chr2g0299661 | 58.378 | 370 | 108 | 4 | 1 | 360 | 1 | 334 | 1.54e-154 | 444 |
| Msa0015620 | MtrunA17_Chr6g0486611 | 63.343 | 341 | 94 | 3 | 1 | 341 | 1 | 310 | 2.66e-154 | 441 |
| Msa0015620 | MtrunA17_Chr8g0390211 | 57.662 | 385 | 116 | 5 | 1 | 371 | 1 | 352 | 2.41e-153 | 439 |
| Msa0015620 | MtrunA17_Chr3g0140071 | 56.183 | 372 | 112 | 4 | 1 | 359 | 1 | 334 | 3.24e-145 | 418 |
| Msa0015620 | MtrunA17_Chr1g0146151 | 56.598 | 341 | 118 | 2 | 1 | 341 | 1 | 311 | 7.24e-138 | 399 |
| Msa0015620 | MtrunA17_Chr7g0214531 | 34.069 | 317 | 160 | 7 | 3 | 303 | 29 | 312 | 2.88e-49 | 175 |
| Msa0015620 | MtrunA17_Chr3g0140431 | 34.727 | 311 | 160 | 7 | 3 | 303 | 30 | 307 | 6.04e-49 | 174 |
| Msa0015620 | MtrunA17_Chr1g0146301 | 33.119 | 311 | 165 | 7 | 3 | 303 | 116 | 393 | 1.58e-46 | 169 |
| Msa0015620 | MtrunA17_Chr1g0213321 | 32.353 | 306 | 175 | 5 | 3 | 303 | 111 | 389 | 4.68e-46 | 167 |
| Msa0015620 | MtrunA17_Chr7g0253211 | 33.333 | 312 | 162 | 6 | 9 | 307 | 324 | 602 | 5.13e-46 | 168 |
| Msa0015620 | MtrunA17_Chr8g0340491 | 33.557 | 298 | 174 | 6 | 9 | 303 | 128 | 404 | 3.93e-44 | 162 |
| Msa0015620 | MtrunA17_Chr5g0405421 | 25.301 | 249 | 148 | 6 | 8 | 252 | 98 | 312 | 2.93e-12 | 68.2 |
| Msa0015620 | MtrunA17_Chr8g0374701 | 27.755 | 245 | 134 | 10 | 6 | 241 | 122 | 332 | 2.56e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0015620 | AT3G23340.1 | 74.085 | 355 | 61 | 3 | 1 | 354 | 1 | 325 | 0.0 | 529 |
| Msa0015620 | AT4G14340.1 | 65.664 | 399 | 84 | 6 | 1 | 376 | 7 | 375 | 0.0 | 510 |
| Msa0015620 | AT4G14340.2 | 70.028 | 357 | 76 | 3 | 1 | 356 | 7 | 333 | 1.04e-179 | 504 |
| Msa0015620 | AT1G03930.1 | 68.595 | 363 | 78 | 3 | 1 | 357 | 1 | 333 | 1.05e-176 | 500 |
| Msa0015620 | AT3G23340.2 | 71.268 | 355 | 57 | 4 | 1 | 354 | 1 | 311 | 2.42e-176 | 498 |
| Msa0015620 | AT4G28540.1 | 64.583 | 384 | 96 | 4 | 1 | 374 | 5 | 358 | 1.87e-174 | 495 |
| Msa0015620 | AT5G44100.1 | 68.871 | 363 | 76 | 4 | 1 | 357 | 1 | 332 | 2.61e-174 | 494 |
| Msa0015620 | AT5G44100.2 | 68.871 | 363 | 76 | 4 | 1 | 357 | 1 | 332 | 2.61e-174 | 494 |
| Msa0015620 | AT5G43320.1 | 67.925 | 371 | 83 | 5 | 1 | 365 | 1 | 341 | 1.89e-173 | 492 |
| Msa0015620 | AT5G43320.2 | 68.681 | 364 | 79 | 4 | 1 | 359 | 1 | 334 | 2.02e-172 | 485 |
| Msa0015620 | AT5G43320.3 | 68.681 | 364 | 79 | 4 | 1 | 359 | 1 | 334 | 2.02e-172 | 485 |
| Msa0015620 | AT1G04440.1 | 62.814 | 398 | 93 | 6 | 1 | 377 | 1 | 364 | 4.00e-172 | 488 |
| Msa0015620 | AT4G26100.1 | 62.088 | 364 | 104 | 3 | 1 | 360 | 1 | 334 | 1.00e-163 | 466 |
| Msa0015620 | AT2G19470.1 | 61.789 | 369 | 99 | 4 | 1 | 359 | 1 | 337 | 3.15e-162 | 462 |
| Msa0015620 | AT1G72710.1 | 63.056 | 360 | 98 | 4 | 1 | 356 | 1 | 329 | 8.24e-162 | 462 |
| Msa0015620 | AT5G57015.1 | 64.348 | 345 | 92 | 3 | 1 | 344 | 1 | 315 | 3.13e-160 | 457 |
| Msa0015620 | AT4G28880.3 | 61.243 | 338 | 101 | 2 | 1 | 338 | 1 | 308 | 1.95e-149 | 429 |
| Msa0015620 | AT4G28880.2 | 61.243 | 338 | 101 | 2 | 1 | 338 | 1 | 308 | 1.95e-149 | 429 |
| Msa0015620 | AT4G28880.1 | 61.243 | 338 | 101 | 2 | 1 | 338 | 1 | 308 | 1.95e-149 | 429 |
| Msa0015620 | AT4G28880.4 | 61.243 | 338 | 101 | 2 | 1 | 338 | 1 | 308 | 1.95e-149 | 429 |
| Msa0015620 | AT4G28860.2 | 55.526 | 380 | 134 | 3 | 1 | 380 | 1 | 345 | 4.03e-149 | 427 |
| Msa0015620 | AT4G28860.1 | 55.526 | 380 | 134 | 3 | 1 | 380 | 1 | 345 | 1.90e-148 | 426 |
| Msa0015620 | AT4G08800.1 | 56.135 | 326 | 81 | 4 | 1 | 326 | 1 | 264 | 1.14e-124 | 361 |
| Msa0015620 | AT2G25760.2 | 35.570 | 298 | 171 | 7 | 9 | 303 | 107 | 386 | 1.55e-50 | 180 |
| Msa0015620 | AT2G25760.1 | 35.235 | 298 | 169 | 6 | 9 | 303 | 107 | 383 | 4.85e-50 | 179 |
| Msa0015620 | AT3G13670.1 | 33.119 | 311 | 179 | 7 | 3 | 307 | 129 | 416 | 2.16e-47 | 171 |
| Msa0015620 | AT5G18190.2 | 32.237 | 304 | 176 | 6 | 9 | 307 | 130 | 408 | 3.22e-45 | 165 |
| Msa0015620 | AT5G18190.1 | 32.237 | 304 | 176 | 6 | 9 | 307 | 130 | 408 | 3.22e-45 | 165 |
| Msa0015620 | AT3G03940.1 | 32.692 | 312 | 164 | 6 | 9 | 307 | 140 | 418 | 4.79e-45 | 165 |
| Msa0015620 | AT2G17890.1 | 24.096 | 249 | 151 | 6 | 8 | 252 | 107 | 321 | 1.16e-11 | 66.6 |
| Msa0015620 | AT3G50530.1 | 27.273 | 242 | 136 | 8 | 6 | 241 | 145 | 352 | 2.10e-11 | 65.9 |
| Msa0015620 | AT3G53570.1 | 24.609 | 256 | 147 | 6 | 8 | 244 | 114 | 342 | 4.06e-11 | 64.7 |
| Msa0015620 | AT3G53570.4 | 24.609 | 256 | 147 | 6 | 8 | 244 | 114 | 342 | 4.06e-11 | 64.7 |
| Msa0015620 | AT3G53570.2 | 24.609 | 256 | 147 | 6 | 8 | 244 | 114 | 342 | 4.06e-11 | 64.7 |
| Msa0015620 | AT3G53570.3 | 24.609 | 256 | 147 | 6 | 8 | 244 | 100 | 328 | 4.51e-11 | 64.7 |
| Msa0015620 | AT3G53570.5 | 24.609 | 256 | 147 | 6 | 8 | 244 | 100 | 328 | 4.51e-11 | 64.7 |
Find 79 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCATTTGGGGAGCTTTATT+TGG | 0.240792 | 1_1:+25193703 | Msa0015620:CDS |
| CTAAATATTGGTACCTCTAT+TGG | 0.252438 | 1_1:-25196283 | None:intergenic |
| GTTACGATGGATATTGTTAT+TGG | 0.292524 | 1_1:+25193644 | None:intergenic |
| ATATCTTAAGAAACTCTTTC+GGG | 0.305643 | 1_1:+25196560 | Msa0015620:CDS |
| CATATCTTAAGAAACTCTTT+CGG | 0.313975 | 1_1:+25196559 | Msa0015620:CDS |
| GTGATGGCTATTGACCTTCT+TGG | 0.321338 | 1_1:+25194996 | Msa0015620:CDS |
| GCATTTGGGGAGCTTTATTT+GGG | 0.341011 | 1_1:+25193704 | Msa0015620:CDS |
| TTTAAGACTGGTTTCACATT+TGG | 0.346834 | 1_1:-25196859 | None:intergenic |
| TTCAAGCTTGGAAGCAAACT+TGG | 0.354665 | 1_1:+25193674 | Msa0015620:CDS |
| AAACTTGGGAGTGGAGCATT+TGG | 0.356250 | 1_1:+25193689 | Msa0015620:CDS |
| TTCTTAAGATATGAATAATC+AGG | 0.358182 | 1_1:-25196549 | None:intergenic |
| TTTAACACTCACCTTGGAAT+TGG | 0.359788 | 1_1:+25195912 | Msa0015620:CDS |
| AGTTTGACTTGGTATTTGAT+TGG | 0.368124 | 1_1:+25196702 | Msa0015620:CDS |
| AACTTGGGAGTGGAGCATTT+GGG | 0.378231 | 1_1:+25193690 | Msa0015620:CDS |
| AGAAGAAATATGAATGGATA+AGG | 0.378535 | 1_1:+25196242 | Msa0015620:CDS |
| TCAGGAAGAAATAATGGCTC+TGG | 0.388829 | 1_1:+25197195 | Msa0015620:intron |
| AAAGCCCGAGAACTTTCTAA+TGG | 0.388867 | 1_1:+25195248 | Msa0015620:CDS |
| TGTATGAGTCTAAATTGTAT+AGG | 0.392182 | 1_1:+25194696 | Msa0015620:CDS |
| CAGACTGCAGCATAGGTCTT+TGG | 0.407190 | 1_1:+25197221 | Msa0015620:CDS |
| GAGAACTTTCTAATGGGTTC+AGG | 0.413955 | 1_1:+25195255 | Msa0015620:CDS |
| CAGGTGTACATTATTGACTA+TGG | 0.418986 | 1_1:+25195565 | Msa0015620:intron |
| AGAGGAAGTGGCTCTTAAAC+TGG | 0.426091 | 1_1:+25193825 | Msa0015620:CDS |
| TATGGTCCTGTGTTTAAGAC+TGG | 0.431845 | 1_1:-25196871 | None:intergenic |
| GTTATAGTCTTCCATGGCAT+GGG | 0.446603 | 1_1:+25196194 | Msa0015620:intron |
| TTAGAACTAGAACCACTTTG+TGG | 0.454457 | 1_1:-25196740 | None:intergenic |
| TATGAAAAGAAGAGTAAAAG+AGG | 0.456252 | 1_1:-25194606 | None:intergenic |
| AGGGAAAACAAGAATCTCAT+TGG | 0.467420 | 1_1:+25195870 | Msa0015620:intron |
| AAGCCCGAGAACTTTCTAAT+GGG | 0.468302 | 1_1:+25195249 | Msa0015620:CDS |
| CGTTCTAATCTCTCTTCATA+TGG | 0.470694 | 1_1:-25196889 | None:intergenic |
| TGAACCCATTAGAAAGTTCT+CGG | 0.471922 | 1_1:-25195253 | None:intergenic |
| ATTTGATTGGACTAAATTGA+AGG | 0.475148 | 1_1:+25196715 | Msa0015620:CDS |
| ACCGCAATGATCGACAATAG+TGG | 0.481921 | 1_1:-25196515 | None:intergenic |
| TGTTATAGTCTTCCATGGCA+TGG | 0.485138 | 1_1:+25196193 | Msa0015620:intron |
| GAAGAAATATGAATGGATAA+GGG | 0.486661 | 1_1:+25196243 | Msa0015620:CDS |
| ACTCCATACCACTTTATATG+AGG | 0.493402 | 1_1:-25194957 | None:intergenic |
| CAGGAAGAAATAATGGCTCT+GGG | 0.501297 | 1_1:+25197196 | Msa0015620:intron |
| TTAAATAAGTCTTCAAGACT+TGG | 0.501394 | 1_1:-25195020 | None:intergenic |
| CCACTTTATATGAGGTATGC+CGG | 0.507981 | 1_1:-25194949 | None:intergenic |
| TGCAGGTTATCAGTTTGACT+TGG | 0.509022 | 1_1:+25196691 | Msa0015620:intron |
| TTCAGGCAGCAAGATCAATC+AGG | 0.509068 | 1_1:+25195272 | Msa0015620:CDS |
| ACGATGGATATTGTTATTGG+TGG | 0.510289 | 1_1:+25193647 | None:intergenic |
| CGGGAACTATTCATTAGAGA+AGG | 0.512534 | 1_1:+25196579 | Msa0015620:CDS |
| AAAGAAGCTAACTCCAATAG+AGG | 0.515041 | 1_1:+25196270 | Msa0015620:CDS |
| TTGTATATTAGGTACCTGTA+TGG | 0.516743 | 1_1:-25195631 | None:intergenic |
| ATTGGTGGAAAATTCAAGCT+TGG | 0.526484 | 1_1:+25193662 | Msa0015620:CDS |
| AAAGATTGTATTTCACATGA+AGG | 0.526919 | 1_1:-25194583 | None:intergenic |
| CACAAAGGCACATACCATAC+AGG | 0.527052 | 1_1:+25195617 | Msa0015620:CDS |
| GAGAGATTAGAACGGCCTAC+AGG | 0.527482 | 1_1:+25196898 | Msa0015620:CDS |
| AAATTGTATAGGCTTCTTCA+AGG | 0.528424 | 1_1:+25194707 | Msa0015620:CDS |
| CTGGGGACAGACTGCAGCAT+AGG | 0.535067 | 1_1:+25197214 | Msa0015620:CDS |
| CTAAAGAGAAGAAATATGAA+TGG | 0.541076 | 1_1:+25196236 | Msa0015620:CDS |
| CTTCAAGACTTGGTCCAAGA+AGG | 0.548592 | 1_1:-25195010 | None:intergenic |
| TGTGAAAACTCAAGAGGAAG+TGG | 0.550394 | 1_1:+25193813 | Msa0015620:CDS |
| TGCACAAATTACCAATTCCA+AGG | 0.554278 | 1_1:-25195923 | None:intergenic |
| TTCATGCCGTGCCCATGCCA+TGG | 0.555518 | 1_1:-25196205 | None:intergenic |
| ATACCTCATATAAAGTGGTA+TGG | 0.563349 | 1_1:+25194954 | Msa0015620:CDS |
| CTTGGAAGCAAACTTGGGAG+TGG | 0.565271 | 1_1:+25193680 | Msa0015620:CDS |
| GAACCCATTAGAAAGTTCTC+GGG | 0.565868 | 1_1:-25195252 | None:intergenic |
| CCGGCATACCTCATATAAAG+TGG | 0.567709 | 1_1:+25194949 | Msa0015620:CDS |
| TCAAGCTTGGAAGCAAACTT+GGG | 0.573496 | 1_1:+25193675 | Msa0015620:CDS |
| TTAGACTCATACAGAAGTTG+AGG | 0.573846 | 1_1:-25194686 | None:intergenic |
| AGAGATGATCTAGAATCGCT+TGG | 0.574171 | 1_1:+25196067 | Msa0015620:CDS |
| ACTTGGGAGTGGAGCATTTG+GGG | 0.577875 | 1_1:+25193691 | Msa0015620:CDS |
| TATAAAGTGGTATGGAGTCG+AGG | 0.580298 | 1_1:+25194962 | Msa0015620:CDS |
| AGTCTTCCATGGCATGGGCA+CGG | 0.583186 | 1_1:+25196199 | Msa0015620:intron |
| GTGAAACCAGTCTTAAACAC+AGG | 0.585633 | 1_1:+25196865 | Msa0015620:CDS |
| AATCATGGAAGAACATCTGA+AGG | 0.597406 | 1_1:-25197261 | None:intergenic |
| TCCACTATTGTCGATCATTG+CGG | 0.598884 | 1_1:+25196514 | Msa0015620:CDS |
| ATAAAGTGGTATGGAGTCGA+GGG | 0.602710 | 1_1:+25194963 | Msa0015620:CDS |
| TGTTGATGTGAAAACTCAAG+AGG | 0.614137 | 1_1:+25193807 | Msa0015620:CDS |
| AAATATGACGTGAACTCTGT+TGG | 0.622690 | 1_1:-25196492 | None:intergenic |
| CGAGGGTGACTACAATGTGA+TGG | 0.626100 | 1_1:+25194980 | Msa0015620:CDS |
| GTAGCGTATATGCACTATCG+TGG | 0.653910 | 1_1:+25195207 | Msa0015620:CDS |
| ATTGTGATCTTAAAACACAA+AGG | 0.669161 | 1_1:+25195602 | Msa0015620:CDS |
| TTGTATAGGCTTCTTCAAGG+AGG | 0.676548 | 1_1:+25194710 | Msa0015620:CDS |
| AAATTGAAGGATCCACAAAG+TGG | 0.696056 | 1_1:+25196728 | Msa0015620:CDS |
| ACATCTGAAGGTGCATACGA+CGG | 0.698148 | 1_1:-25197249 | None:intergenic |
| AGGAAGAAATAATGGCTCTG+GGG | 0.722212 | 1_1:+25197197 | Msa0015620:intron |
| CATATGAAGAGAGATTAGAA+CGG | 0.732307 | 1_1:+25196890 | Msa0015620:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATTAATTTATTATAAA+TGG | + | chr1_1:25196662-25196681 | Msa0015620:intron | 0.0% |
| !! | TTTCTTAAAATTAAACATTA+AGG | - | chr1_1:25195111-25195130 | None:intergenic | 10.0% |
| !! | AAATCATAAAATTTAACATA+AGG | - | chr1_1:25195531-25195550 | None:intergenic | 10.0% |
| !! | TTTAATTAAACTAAAGATTT+GGG | - | chr1_1:25196389-25196408 | None:intergenic | 10.0% |
| !! | ATTTAATTAAACTAAAGATT+TGG | - | chr1_1:25196390-25196409 | None:intergenic | 10.0% |
| !!! | AAATTTTTAATTTCTTAAAC+AGG | + | chr1_1:25196452-25196471 | Msa0015620:intron | 10.0% |
| !!! | CTAATAAATTTTATTTTAGT+CGG | + | chr1_1:25197122-25197141 | Msa0015620:intron | 10.0% |
| !!! | TATGTTTTCTTTGAATAATT+TGG | + | chr1_1:25193768-25193787 | Msa0015620:intron | 15.0% |
| !! | AATGTGTATGAAAATAATTA+TGG | - | chr1_1:25195805-25195824 | None:intergenic | 15.0% |
| !! | TTAATTAAACTAAAGATTTG+GGG | - | chr1_1:25196388-25196407 | None:intergenic | 15.0% |
| !! | ATTTATTAAATTATCAGCAT+AGG | - | chr1_1:25196975-25196994 | None:intergenic | 15.0% |
| !! | TATGCTGATAATTTAATAAA+TGG | + | chr1_1:25196974-25196993 | Msa0015620:intron | 15.0% |
| !! | CGACTAAAATAAAATTTATT+AGG | - | chr1_1:25197124-25197143 | None:intergenic | 15.0% |
| !!! | ATCTAAAACATTGGAATTTA+GGG | - | chr1_1:25194096-25194115 | None:intergenic | 20.0% |
| !!! | TATCTAAAACATTGGAATTT+AGG | - | chr1_1:25194097-25194116 | None:intergenic | 20.0% |
| !!! | TTTCACTATATCTAAAACAT+TGG | - | chr1_1:25194105-25194124 | None:intergenic | 20.0% |
| !!! | CATTTTCCAATTAGTATTTA+CGG | + | chr1_1:25194164-25194183 | Msa0015620:intron | 20.0% |
| !!! | GTTGTGTTATTTTATTGAAA+GGG | - | chr1_1:25194409-25194428 | None:intergenic | 20.0% |
| !!! | TGTTGTGTTATTTTATTGAA+AGG | - | chr1_1:25194410-25194429 | None:intergenic | 20.0% |
| !!! | TCTTTTTTCTACATTTTCAT+TGG | + | chr1_1:25194634-25194653 | Msa0015620:CDS | 20.0% |
| !! | CATTAAATACTCAAACTATT+AGG | - | chr1_1:25194910-25194929 | None:intergenic | 20.0% |
| !! | TCTTGCATTTAATGTAATTT+AGG | + | chr1_1:25195312-25195331 | Msa0015620:intron | 20.0% |
| !! | GATTTCCATTTAATTATTAC+AGG | + | chr1_1:25195546-25195565 | Msa0015620:intron | 20.0% |
| !!! | ACCTAATATACAATTTTGTT+TGG | + | chr1_1:25195641-25195660 | Msa0015620:intron | 20.0% |
| !!! | CCTAATATACAATTTTGTTT+GGG | + | chr1_1:25195642-25195661 | Msa0015620:intron | 20.0% |
| !!! | AATTTTCAACAGATGAAATT+TGG | - | chr1_1:25196437-25196456 | None:intergenic | 20.0% |
| !! | TTCTTAAGATATGAATAATC+AGG | - | chr1_1:25196552-25196571 | None:intergenic | 20.0% |
| !!! | TTTATAACTATCACAAGTTT+TGG | + | chr1_1:25196921-25196940 | Msa0015620:intron | 20.0% |
| !! | ATGCATATTATTTAAACAAG+TGG | - | chr1_1:25197021-25197040 | None:intergenic | 20.0% |
| !!! | TGTTATTTTAATTCTAGGAT+AGG | + | chr1_1:25197067-25197086 | Msa0015620:intron | 20.0% |
| !! | TGTACCATGATTTTAAATTG+CGG | + | chr1_1:25193982-25194001 | Msa0015620:intron | 25.0% |
| ! | AACACAACATATTTACTTGT+CGG | + | chr1_1:25194421-25194440 | Msa0015620:intron | 25.0% |
| ! | AAAGATTGTATTTCACATGA+AGG | - | chr1_1:25194586-25194605 | None:intergenic | 25.0% |
| ! | TATGAAAAGAAGAGTAAAAG+AGG | - | chr1_1:25194609-25194628 | None:intergenic | 25.0% |
| ! | TGTATGAGTCTAAATTGTAT+AGG | + | chr1_1:25194696-25194715 | Msa0015620:CDS | 25.0% |
| !!! | CAATTTGTTTTATTTCCACT+AGG | - | chr1_1:25194819-25194838 | None:intergenic | 25.0% |
| !!! | TGCTAATTTTTATTTGAAGC+CGG | + | chr1_1:25194930-25194949 | Msa0015620:intron | 25.0% |
| ! | TTAAATAAGTCTTCAAGACT+TGG | - | chr1_1:25195023-25195042 | None:intergenic | 25.0% |
| !!! | AAGCATCAATACTGTTTTTA+AGG | - | chr1_1:25195066-25195085 | None:intergenic | 25.0% |
| ! | TTTGCTTCATGCTAAAAATA+TGG | - | chr1_1:25195135-25195154 | None:intergenic | 25.0% |
| !!! | CATGAAGCAAAAGTATTTTA+CGG | + | chr1_1:25195144-25195163 | Msa0015620:intron | 25.0% |
| ! | ATCTGTTGTCTGATTATATT+TGG | + | chr1_1:25195402-25195421 | Msa0015620:intron | 25.0% |
| ! | TCCTATTTCAAATACAAGAA+TGG | + | chr1_1:25195451-25195470 | Msa0015620:intron | 25.0% |
| !! | TCCATTCTTGTATTTGAAAT+AGG | - | chr1_1:25195455-25195474 | None:intergenic | 25.0% |
| ! | TTCAAATACAAGAATGGAAA+AGG | + | chr1_1:25195457-25195476 | Msa0015620:intron | 25.0% |
| ! | TGGAAGTAGAAAAATACAAA+CGG | + | chr1_1:25195493-25195512 | Msa0015620:intron | 25.0% |
| ! | AATTTAACATAAGGCCTATA+TGG | - | chr1_1:25195522-25195541 | None:intergenic | 25.0% |
| ! | GTACACCTGTAATAATTAAA+TGG | - | chr1_1:25195554-25195573 | None:intergenic | 25.0% |
| ! | ATTGTGATCTTAAAACACAA+AGG | + | chr1_1:25195602-25195621 | Msa0015620:CDS | 25.0% |
| ! | CCCAAACAAAATTGTATATT+AGG | - | chr1_1:25195645-25195664 | None:intergenic | 25.0% |
| ! | ACTTAAATGTAACTGTAGAA+AGG | - | chr1_1:25195684-25195703 | None:intergenic | 25.0% |
| ! | AAGTTGAAACAAAACGTAAA+GGG | - | chr1_1:25195740-25195759 | None:intergenic | 25.0% |
| ! | AAAGTTGAAACAAAACGTAA+AGG | - | chr1_1:25195741-25195760 | None:intergenic | 25.0% |
| !!! | TTTTGTTTCAACTTTAAAGC+TGG | + | chr1_1:25195746-25195765 | Msa0015620:intron | 25.0% |
| !!! | AATTTTGTTATAGTCTTCCA+TGG | + | chr1_1:25196188-25196207 | Msa0015620:intron | 25.0% |
| ! | CTAAAGAGAAGAAATATGAA+TGG | + | chr1_1:25196236-25196255 | Msa0015620:CDS | 25.0% |
| ! | AGAAGAAATATGAATGGATA+AGG | + | chr1_1:25196242-25196261 | Msa0015620:CDS | 25.0% |
| ! | GAAGAAATATGAATGGATAA+GGG | + | chr1_1:25196243-25196262 | Msa0015620:CDS | 25.0% |
| ! | AGCTTCTTGAAACTAAATAT+TGG | - | chr1_1:25196298-25196317 | None:intergenic | 25.0% |
| ! | AACATGATGCAGAAAAATAA+GGG | - | chr1_1:25196347-25196366 | None:intergenic | 25.0% |
| ! | AAACATGATGCAGAAAAATA+AGG | - | chr1_1:25196348-25196367 | None:intergenic | 25.0% |
| ! | CATATCTTAAGAAACTCTTT+CGG | + | chr1_1:25196559-25196578 | Msa0015620:CDS | 25.0% |
| ! | ATATCTTAAGAAACTCTTTC+GGG | + | chr1_1:25196560-25196579 | Msa0015620:CDS | 25.0% |
| !! | TTTGCAAGAATTTTCAAATG+AGG | - | chr1_1:25196638-25196657 | None:intergenic | 25.0% |
| ! | ATTTGATTGGACTAAATTGA+AGG | + | chr1_1:25196715-25196734 | Msa0015620:CDS | 25.0% |
| !!! | GTTGGTGTTATTTTAATTCT+AGG | + | chr1_1:25197062-25197081 | Msa0015620:intron | 25.0% |
| ! | AATTTGGACTTGTTTGTTTC+AGG | + | chr1_1:25193784-25193803 | Msa0015620:intron | 30.0% |
| ! | CGTCTAAAATATTGTTGATG+CGG | + | chr1_1:25194021-25194040 | Msa0015620:intron | 30.0% |
| TTTGGTCCGTAAATACTAAT+TGG | - | chr1_1:25194173-25194192 | None:intergenic | 30.0% | |
| GTGTATAGGTATATGTGTAT+GGG | - | chr1_1:25194378-25194397 | None:intergenic | 30.0% | |
| TGTGTATAGGTATATGTGTA+TGG | - | chr1_1:25194379-25194398 | None:intergenic | 30.0% | |
| !!! | TGTTATTTTATTGAAAGGGC+AGG | - | chr1_1:25194405-25194424 | None:intergenic | 30.0% |
| ACACAACATATTTACTTGTC+GGG | + | chr1_1:25194422-25194441 | Msa0015620:intron | 30.0% | |
| AAATTGTATAGGCTTCTTCA+AGG | + | chr1_1:25194707-25194726 | Msa0015620:CDS | 30.0% | |
| CCGCTTATTAACAAAATTGT+CGG | - | chr1_1:25194779-25194798 | None:intergenic | 30.0% | |
| ! | CCGACAATTTTGTTAATAAG+CGG | + | chr1_1:25194776-25194795 | Msa0015620:intron | 30.0% |
| ATACCTCATATAAAGTGGTA+TGG | + | chr1_1:25194954-25194973 | Msa0015620:CDS | 30.0% | |
| CGTCAAATAGTAAACATTGA+AGG | - | chr1_1:25195175-25195194 | None:intergenic | 30.0% | |
| TCTTTGAACTTGAAAAATGC+TGG | - | chr1_1:25195382-25195401 | None:intergenic | 30.0% | |
| ! | GAAAAGGTCACTTTGTTAAA+TGG | + | chr1_1:25195473-25195492 | Msa0015620:intron | 30.0% |
| AATACAAACGGAAACCATAT+AGG | + | chr1_1:25195505-25195524 | Msa0015620:intron | 30.0% | |
| !!! | GATCACAATACTTTTTTGCA+AGG | - | chr1_1:25195591-25195610 | None:intergenic | 30.0% |
| TTGTATATTAGGTACCTGTA+TGG | - | chr1_1:25195634-25195653 | None:intergenic | 30.0% | |
| GTAAAGGGAACAAAATACAA+AGG | - | chr1_1:25195725-25195744 | None:intergenic | 30.0% | |
| !! | GTACTAATGTACTTTTTGAG+AGG | + | chr1_1:25196094-25196113 | Msa0015620:CDS | 30.0% |
| !! | TAATGTACTTTTTGAGAGGA+AGG | + | chr1_1:25196098-25196117 | Msa0015620:CDS | 30.0% |
| AATGTATAATGACGAGTACA+AGG | - | chr1_1:25196153-25196172 | None:intergenic | 30.0% | |
| CTAAATATTGGTACCTCTAT+TGG | - | chr1_1:25196286-25196305 | None:intergenic | 30.0% | |
| ! | TAGTTTCAAGAAGCTCTTTT+AGG | + | chr1_1:25196303-25196322 | Msa0015620:intron | 30.0% |
| CTAAAGATTTGGGGATTAAA+AGG | - | chr1_1:25196379-25196398 | None:intergenic | 30.0% | |
| !! | AGTTTGACTTGGTATTTGAT+TGG | + | chr1_1:25196702-25196721 | Msa0015620:CDS | 30.0% |
| !! | TTTAAGACTGGTTTCACATT+TGG | - | chr1_1:25196862-25196881 | None:intergenic | 30.0% |
| CATATGAAGAGAGATTAGAA+CGG | + | chr1_1:25196890-25196909 | Msa0015620:CDS | 30.0% | |
| TGTGATAGTTATAAACCTGT+AGG | - | chr1_1:25196916-25196935 | None:intergenic | 30.0% | |
| TATATGATACACTGCAAAGT+TGG | + | chr1_1:25197044-25197063 | Msa0015620:intron | 30.0% | |
| TTTGAAAAGTCGTTGATCAT+AGG | + | chr1_1:25197092-25197111 | Msa0015620:intron | 30.0% | |
| !! | GCATTTTCAGGAAGAAATAA+TGG | + | chr1_1:25197189-25197208 | Msa0015620:intron | 30.0% |
| ATTGGTGGAAAATTCAAGCT+TGG | + | chr1_1:25193662-25193681 | Msa0015620:CDS | 35.0% | |
| TGTTGATGTGAAAACTCAAG+AGG | + | chr1_1:25193807-25193826 | Msa0015620:CDS | 35.0% | |
| TGTCACTCCAATTTCTATGT+AGG | + | chr1_1:25193871-25193890 | Msa0015620:intron | 35.0% | |
| GTCACTCCAATTTCTATGTA+GGG | + | chr1_1:25193872-25193891 | Msa0015620:intron | 35.0% | |
| ! | CCATGATTTTAAATTGCGGT+CGG | + | chr1_1:25193986-25194005 | Msa0015620:intron | 35.0% |
| CTAAAATATTGTTGATGCGG+TGG | + | chr1_1:25194024-25194043 | Msa0015620:intron | 35.0% | |
| CAAAGTTCACATCGCAATTA+CGG | - | chr1_1:25194070-25194089 | None:intergenic | 35.0% | |
| CAAAGTCAGACTCTACTATA+GGG | + | chr1_1:25194189-25194208 | Msa0015620:intron | 35.0% | |
| ! | TTAAATTGCGGTTCTAGTCA+CGG | - | chr1_1:25194341-25194360 | None:intergenic | 35.0% |
| ! | TACATTTTCATTGGCATCTC+AGG | + | chr1_1:25194643-25194662 | Msa0015620:CDS | 35.0% |
| TTAGACTCATACAGAAGTTG+AGG | - | chr1_1:25194689-25194708 | None:intergenic | 35.0% | |
| ACTCCATACCACTTTATATG+AGG | - | chr1_1:25194960-25194979 | None:intergenic | 35.0% | |
| TGAACCCATTAGAAAGTTCT+CGG | - | chr1_1:25195256-25195275 | None:intergenic | 35.0% | |
| ATTTAGGCACGTATCTTCTA+AGG | + | chr1_1:25195328-25195347 | Msa0015620:intron | 35.0% | |
| GGTGATAGATGTGTAAGTTA+TGG | - | chr1_1:25195361-25195380 | None:intergenic | 35.0% | |
| ! | CAGGTGTACATTATTGACTA+TGG | + | chr1_1:25195565-25195584 | Msa0015620:intron | 35.0% |
| CTGTAGAAAGGAAAACAAGT+TGG | - | chr1_1:25195672-25195691 | None:intergenic | 35.0% | |
| ! | TGCAATGTTTTACTCTCAAC+AGG | + | chr1_1:25195850-25195869 | Msa0015620:intron | 35.0% |
| ! | GCAATGTTTTACTCTCAACA+GGG | + | chr1_1:25195851-25195870 | Msa0015620:intron | 35.0% |
| AGGGAAAACAAGAATCTCAT+TGG | + | chr1_1:25195870-25195889 | Msa0015620:intron | 35.0% | |
| TTTAACACTCACCTTGGAAT+TGG | + | chr1_1:25195912-25195931 | Msa0015620:CDS | 35.0% | |
| TGCACAAATTACCAATTCCA+AGG | - | chr1_1:25195926-25195945 | None:intergenic | 35.0% | |
| AAAGAAGCTAACTCCAATAG+AGG | + | chr1_1:25196270-25196289 | Msa0015620:CDS | 35.0% | |
| AAATATGACGTGAACTCTGT+TGG | - | chr1_1:25196495-25196514 | None:intergenic | 35.0% | |
| ! | ATTATAAATGGCGCTTTTGC+AGG | + | chr1_1:25196674-25196693 | Msa0015620:intron | 35.0% |
| AAATTGAAGGATCCACAAAG+TGG | + | chr1_1:25196728-25196747 | Msa0015620:CDS | 35.0% | |
| TTAGAACTAGAACCACTTTG+TGG | - | chr1_1:25196743-25196762 | None:intergenic | 35.0% | |
| CGTTCTAATCTCTCTTCATA+TGG | - | chr1_1:25196892-25196911 | None:intergenic | 35.0% | |
| GAGATTCGAGATAGATTATG+AGG | + | chr1_1:25197156-25197175 | Msa0015620:intron | 35.0% | |
| ATAGATTATGAGGTGAGGTT+GGG | + | chr1_1:25197166-25197185 | Msa0015620:intron | 35.0% | |
| TTCAAGCTTGGAAGCAAACT+TGG | + | chr1_1:25193674-25193693 | Msa0015620:CDS | 40.0% | |
| TCAAGCTTGGAAGCAAACTT+GGG | + | chr1_1:25193675-25193694 | Msa0015620:CDS | 40.0% | |
| !! | AGCATTTGGGGAGCTTTATT+TGG | + | chr1_1:25193703-25193722 | Msa0015620:CDS | 40.0% |
| !! | GCATTTGGGGAGCTTTATTT+GGG | + | chr1_1:25193704-25193723 | Msa0015620:CDS | 40.0% |
| TGTGAAAACTCAAGAGGAAG+TGG | + | chr1_1:25193813-25193832 | Msa0015620:CDS | 40.0% | |
| ACTGGTGAGTGAAGTTGTTA+TGG | + | chr1_1:25193843-25193862 | Msa0015620:intron | 40.0% | |
| CTCCAATTTCTATGTAGGGA+TGG | + | chr1_1:25193876-25193895 | Msa0015620:intron | 40.0% | |
| ! | TTTTGTCCAACTACGTGCAA+GGG | - | chr1_1:25193941-25193960 | None:intergenic | 40.0% |
| ! | ATTTTGTCCAACTACGTGCA+AGG | - | chr1_1:25193942-25193961 | None:intergenic | 40.0% |
| GCACGTAGTTGGACAAAATA+TGG | + | chr1_1:25193943-25193962 | Msa0015620:intron | 40.0% | |
| ! | CCGACCGCAATTTAAAATCA+TGG | - | chr1_1:25193989-25194008 | None:intergenic | 40.0% |
| CCTATAGTAGAGTCTGACTT+TGG | - | chr1_1:25194191-25194210 | None:intergenic | 40.0% | |
| CCAAAGTCAGACTCTACTAT+AGG | + | chr1_1:25194188-25194207 | Msa0015620:intron | 40.0% | |
| GTGACTAGAACCGCAATTTA+AGG | + | chr1_1:25194340-25194359 | Msa0015620:intron | 40.0% | |
| ! | AGAGTCATGGCCTTAAATTG+CGG | - | chr1_1:25194353-25194372 | None:intergenic | 40.0% |
| ATGTGTATGGGTAAGAGTCA+TGG | - | chr1_1:25194366-25194385 | None:intergenic | 40.0% | |
| TTGTATAGGCTTCTTCAAGG+AGG | + | chr1_1:25194710-25194729 | Msa0015620:CDS | 40.0% | |
| TGCATGAAAAGAAGCTGAAC+AGG | - | chr1_1:25194755-25194774 | None:intergenic | 40.0% | |
| CCACTTTATATGAGGTATGC+CGG | - | chr1_1:25194952-25194971 | None:intergenic | 40.0% | |
| TATAAAGTGGTATGGAGTCG+AGG | + | chr1_1:25194962-25194981 | Msa0015620:CDS | 40.0% | |
| ATAAAGTGGTATGGAGTCGA+GGG | + | chr1_1:25194963-25194982 | Msa0015620:CDS | 40.0% | |
| AAAGCCCGAGAACTTTCTAA+TGG | + | chr1_1:25195248-25195267 | Msa0015620:CDS | 40.0% | |
| AAGCCCGAGAACTTTCTAAT+GGG | + | chr1_1:25195249-25195268 | Msa0015620:CDS | 40.0% | |
| GAACCCATTAGAAAGTTCTC+GGG | - | chr1_1:25195255-25195274 | None:intergenic | 40.0% | |
| !! | GAGAACTTTCTAATGGGTTC+AGG | + | chr1_1:25195255-25195274 | Msa0015620:CDS | 40.0% |
| TTCCACTGATGTTGCATGAA+TGG | + | chr1_1:25195826-25195845 | Msa0015620:intron | 40.0% | |
| !! | GCAAGTTTTAACACTCACCT+TGG | + | chr1_1:25195906-25195925 | Msa0015620:CDS | 40.0% |
| ! | AGAGATGATCTAGAATCGCT+TGG | + | chr1_1:25196067-25196086 | Msa0015620:CDS | 40.0% |
| !! | GTACTTTTTGAGAGGAAGGT+TGG | + | chr1_1:25196102-25196121 | Msa0015620:intron | 40.0% |
| !! | TTTTTGAGAGGAAGGTTGGT+TGG | + | chr1_1:25196106-25196125 | Msa0015620:intron | 40.0% |
| TGTTATAGTCTTCCATGGCA+TGG | + | chr1_1:25196193-25196212 | Msa0015620:intron | 40.0% | |
| GTTATAGTCTTCCATGGCAT+GGG | + | chr1_1:25196194-25196213 | Msa0015620:intron | 40.0% | |
| TCCACTATTGTCGATCATTG+CGG | + | chr1_1:25196514-25196533 | Msa0015620:CDS | 40.0% | |
| CGGGAACTATTCATTAGAGA+AGG | + | chr1_1:25196579-25196598 | Msa0015620:CDS | 40.0% | |
| TGCAGGTTATCAGTTTGACT+TGG | + | chr1_1:25196691-25196710 | Msa0015620:intron | 40.0% | |
| GTGAAACCAGTCTTAAACAC+AGG | + | chr1_1:25196865-25196884 | Msa0015620:CDS | 40.0% | |
| ! | TATGGTCCTGTGTTTAAGAC+TGG | - | chr1_1:25196874-25196893 | None:intergenic | 40.0% |
| TCGAGATAGATTATGAGGTG+AGG | + | chr1_1:25197161-25197180 | Msa0015620:intron | 40.0% | |
| GATAGATTATGAGGTGAGGT+TGG | + | chr1_1:25197165-25197184 | Msa0015620:intron | 40.0% | |
| TAGATTATGAGGTGAGGTTG+GGG | + | chr1_1:25197167-25197186 | Msa0015620:intron | 40.0% | |
| TCAGGAAGAAATAATGGCTC+TGG | + | chr1_1:25197195-25197214 | Msa0015620:intron | 40.0% | |
| CAGGAAGAAATAATGGCTCT+GGG | + | chr1_1:25197196-25197215 | Msa0015620:intron | 40.0% | |
| ! | AGGAAGAAATAATGGCTCTG+GGG | + | chr1_1:25197197-25197216 | Msa0015620:intron | 40.0% |
| ! | AAACTTGGGAGTGGAGCATT+TGG | + | chr1_1:25193689-25193708 | Msa0015620:CDS | 45.0% |
| ! | AACTTGGGAGTGGAGCATTT+GGG | + | chr1_1:25193690-25193709 | Msa0015620:CDS | 45.0% |
| AGAGGAAGTGGCTCTTAAAC+TGG | + | chr1_1:25193825-25193844 | Msa0015620:CDS | 45.0% | |
| CGCCATCCCTACATAGAAAT+TGG | - | chr1_1:25193881-25193900 | None:intergenic | 45.0% | |
| TTTCTATGTAGGGATGGCGA+TGG | + | chr1_1:25193882-25193901 | Msa0015620:intron | 45.0% | |
| TTCTATGTAGGGATGGCGAT+GGG | + | chr1_1:25193883-25193902 | Msa0015620:intron | 45.0% | |
| TTTGTCCAACTACGTGCAAG+GGG | - | chr1_1:25193940-25193959 | None:intergenic | 45.0% | |
| AAAGGGCAGGTGATGTGTAT+AGG | - | chr1_1:25194392-25194411 | None:intergenic | 45.0% | |
| CCGGCATACCTCATATAAAG+TGG | + | chr1_1:25194949-25194968 | Msa0015620:CDS | 45.0% | |
| GTGATGGCTATTGACCTTCT+TGG | + | chr1_1:25194996-25195015 | Msa0015620:CDS | 45.0% | |
| ! | CTTCAAGACTTGGTCCAAGA+AGG | - | chr1_1:25195013-25195032 | None:intergenic | 45.0% |
| GTAGCGTATATGCACTATCG+TGG | + | chr1_1:25195207-25195226 | Msa0015620:CDS | 45.0% | |
| TTCAGGCAGCAAGATCAATC+AGG | + | chr1_1:25195272-25195291 | Msa0015620:CDS | 45.0% | |
| ! | CACAAAGGCACATACCATAC+AGG | + | chr1_1:25195617-25195636 | Msa0015620:CDS | 45.0% |
| AGCCATTCATGCAACATCAG+TGG | - | chr1_1:25195831-25195850 | None:intergenic | 45.0% | |
| ACCGCAATGATCGACAATAG+TGG | - | chr1_1:25196518-25196537 | None:intergenic | 45.0% | |
| ! | ACATCTGAAGGTGCATACGA+CGG | - | chr1_1:25197252-25197271 | None:intergenic | 45.0% |
| !! | TACAAAATATTATTAAATAT+TGG | + | chr1_1:25194864-25194883 | Msa0015620:intron | 5.0% |
| !!! | AATTTCTTATTTAAATAAAT+TGG | + | chr1_1:25195996-25196015 | Msa0015620:intron | 5.0% |
| CTTGGAAGCAAACTTGGGAG+TGG | + | chr1_1:25193680-25193699 | Msa0015620:CDS | 50.0% | |
| ! | ACTTGGGAGTGGAGCATTTG+GGG | + | chr1_1:25193691-25193710 | Msa0015620:CDS | 50.0% |
| TTACGGTGCCTTTGCGGTTA+CGG | - | chr1_1:25194053-25194072 | None:intergenic | 50.0% | |
| TCGCAATTACGGTGCCTTTG+CGG | - | chr1_1:25194059-25194078 | None:intergenic | 50.0% | |
| CACTGATGCGACTCGCATTA+AGG | - | chr1_1:25194291-25194310 | None:intergenic | 50.0% | |
| ! | ATAGCAGAGCTCTAGCCTAG+TGG | + | chr1_1:25194801-25194820 | Msa0015620:intron | 50.0% |
| CGAGGGTGACTACAATGTGA+TGG | + | chr1_1:25194980-25194999 | Msa0015620:CDS | 50.0% | |
| GAGAGATTAGAACGGCCTAC+AGG | + | chr1_1:25196898-25196917 | Msa0015620:CDS | 50.0% | |
| CAGACTGCAGCATAGGTCTT+TGG | + | chr1_1:25197221-25197240 | Msa0015620:CDS | 50.0% | |
| ATGTAGGGATGGCGATGGGT+AGG | + | chr1_1:25193887-25193906 | Msa0015620:intron | 55.0% | |
| TGTAGGGATGGCGATGGGTA+GGG | + | chr1_1:25193888-25193907 | Msa0015620:intron | 55.0% | |
| ! | GATGGCGATGGGTAGGGTTT+TGG | + | chr1_1:25193894-25193913 | Msa0015620:intron | 55.0% |
| TCTGTCCCCTTGCACGTAGT+TGG | + | chr1_1:25193932-25193951 | Msa0015620:intron | 55.0% | |
| AGTCTTCCATGGCATGGGCA+CGG | + | chr1_1:25196199-25196218 | Msa0015620:intron | 55.0% | |
| !! | GGTGAGGTTGGGGCATTTTC+AGG | + | chr1_1:25197177-25197196 | Msa0015620:intron | 55.0% |
| CTACGTGCAAGGGGACAGAC+AGG | - | chr1_1:25193931-25193950 | None:intergenic | 60.0% | |
| TTCATGCCGTGCCCATGCCA+TGG | - | chr1_1:25196208-25196227 | None:intergenic | 60.0% | |
| CTGGGGACAGACTGCAGCAT+AGG | + | chr1_1:25197214-25197233 | Msa0015620:CDS | 60.0% | |
| GGTGGCCACCGTAACCGCAA+AGG | + | chr1_1:25194042-25194061 | Msa0015620:intron | 65.0% | |
| CGGTGCCTTTGCGGTTACGG+TGG | - | chr1_1:25194050-25194069 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 25193650 | 25197281 | 25193650 | ID=Msa0015620;Name=Msa0015620 |
| chr1_1 | mRNA | 25193650 | 25197281 | 25193650 | ID=Msa0015620-mRNA-1;Parent=Msa0015620;Name=Msa0015620-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0|0|1|0.91|0.84|13|0|382 |
| chr1_1 | exon | 25193650 | 25193725 | 25193650 | ID=Msa0015620-mRNA-1:exon:8730;Parent=Msa0015620-mRNA-1 |
| chr1_1 | exon | 25193806 | 25193846 | 25193806 | ID=Msa0015620-mRNA-1:exon:8731;Parent=Msa0015620-mRNA-1 |
| chr1_1 | exon | 25194581 | 25194734 | 25194581 | ID=Msa0015620-mRNA-1:exon:8732;Parent=Msa0015620-mRNA-1 |
| chr1_1 | exon | 25194949 | 25195097 | 25194949 | ID=Msa0015620-mRNA-1:exon:8733;Parent=Msa0015620-mRNA-1 |
| chr1_1 | exon | 25195198 | 25195293 | 25195198 | ID=Msa0015620-mRNA-1:exon:8734;Parent=Msa0015620-mRNA-1 |
| chr1_1 | exon | 25195568 | 25195638 | 25195568 | ID=Msa0015620-mRNA-1:exon:8735;Parent=Msa0015620-mRNA-1 |
| chr1_1 | exon | 25195872 | 25195933 | 25195872 | ID=Msa0015620-mRNA-1:exon:8736;Parent=Msa0015620-mRNA-1 |
| chr1_1 | exon | 25196056 | 25196119 | 25196056 | ID=Msa0015620-mRNA-1:exon:8737;Parent=Msa0015620-mRNA-1 |
| chr1_1 | exon | 25196201 | 25196291 | 25196201 | ID=Msa0015620-mRNA-1:exon:8738;Parent=Msa0015620-mRNA-1 |
| chr1_1 | exon | 25196474 | 25196600 | 25196474 | ID=Msa0015620-mRNA-1:exon:8739;Parent=Msa0015620-mRNA-1 |
| chr1_1 | exon | 25196696 | 25196769 | 25196696 | ID=Msa0015620-mRNA-1:exon:8740;Parent=Msa0015620-mRNA-1 |
| chr1_1 | exon | 25196859 | 25196919 | 25196859 | ID=Msa0015620-mRNA-1:exon:8741;Parent=Msa0015620-mRNA-1 |
| chr1_1 | exon | 25197199 | 25197281 | 25197199 | ID=Msa0015620-mRNA-1:exon:8742;Parent=Msa0015620-mRNA-1 |
| chr1_1 | CDS | 25193650 | 25193725 | 25193650 | ID=Msa0015620-mRNA-1:cds;Parent=Msa0015620-mRNA-1 |
| chr1_1 | CDS | 25193806 | 25193846 | 25193806 | ID=Msa0015620-mRNA-1:cds;Parent=Msa0015620-mRNA-1 |
| chr1_1 | CDS | 25194581 | 25194734 | 25194581 | ID=Msa0015620-mRNA-1:cds;Parent=Msa0015620-mRNA-1 |
| chr1_1 | CDS | 25194949 | 25195097 | 25194949 | ID=Msa0015620-mRNA-1:cds;Parent=Msa0015620-mRNA-1 |
| chr1_1 | CDS | 25195198 | 25195293 | 25195198 | ID=Msa0015620-mRNA-1:cds;Parent=Msa0015620-mRNA-1 |
| chr1_1 | CDS | 25195568 | 25195638 | 25195568 | ID=Msa0015620-mRNA-1:cds;Parent=Msa0015620-mRNA-1 |
| chr1_1 | CDS | 25195872 | 25195933 | 25195872 | ID=Msa0015620-mRNA-1:cds;Parent=Msa0015620-mRNA-1 |
| chr1_1 | CDS | 25196056 | 25196119 | 25196056 | ID=Msa0015620-mRNA-1:cds;Parent=Msa0015620-mRNA-1 |
| chr1_1 | CDS | 25196201 | 25196291 | 25196201 | ID=Msa0015620-mRNA-1:cds;Parent=Msa0015620-mRNA-1 |
| chr1_1 | CDS | 25196474 | 25196600 | 25196474 | ID=Msa0015620-mRNA-1:cds;Parent=Msa0015620-mRNA-1 |
| chr1_1 | CDS | 25196696 | 25196769 | 25196696 | ID=Msa0015620-mRNA-1:cds;Parent=Msa0015620-mRNA-1 |
| chr1_1 | CDS | 25196859 | 25196919 | 25196859 | ID=Msa0015620-mRNA-1:cds;Parent=Msa0015620-mRNA-1 |
| chr1_1 | CDS | 25197199 | 25197281 | 25197199 | ID=Msa0015620-mRNA-1:cds;Parent=Msa0015620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
