AlfalfaGEDB | Msa0015660

M. sativa cultivar zhongmu-4 / Msa0015660

KEGG: K08790|K20069
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007399 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0010975 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0022008 GO:0023052 GO:0030154 GO:0030554 GO:0031344 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0035556 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045595 GO:0045664 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050773 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051716 GO:0051960 GO:0060284 GO:0065007 GO:0071704 GO:0097159 GO:0097367 GO:0120035 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:2000026
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0015660	sp\|Q9Y2H1\|ST38L_HUMAN	48.387	434	206	5	37	461	12	436	4.75e-136	404

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0015660	MtrunA17_Chr1g0167311	88.615	527	33	3	1	501	1	526	0.0	956
Msa0015660	MtrunA17_Chr1g0167351	77.947	526	84	4	1	499	1	521	0.0	819
Msa0015660	MtrunA17_Chr1g0187581	70.476	525	120	7	7	499	5	526	0.0	743
Msa0015660	MtrunA17_Chr1g0183651	71.338	471	125	5	1	464	1	468	0.0	685
Msa0015660	MtrunA17_Chr7g0261491	66.411	521	135	11	1	483	1	519	0.0	675
Msa0015660	MtrunA17_Chr3g0135951	62.529	435	153	4	39	464	18	451	0.0	556
Msa0015660	MtrunA17_Chr2g0299781	62.217	442	153	5	34	464	32	470	0.0	554
Msa0015660	MtrunA17_Chr1g0153321	60.890	427	159	5	42	464	35	457	0.0	540
Msa0015660	MtrunA17_Chr6g0478601	37.949	390	221	6	54	442	59	428	1.94e-84	270
Msa0015660	MtrunA17_Chr4g0018201	40.409	391	209	10	54	442	706	1074	6.38e-80	270

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0015660	AT3G23310.1	70.980	510	107	6	16	495	31	529	733
Msa0015660	AT4G14350.3	71.837	490	109	4	34	495	38	526	718
Msa0015660	AT4G14350.2	71.837	490	109	4	34	495	38	526	717
Msa0015660	AT4G14350.1	71.837	490	109	4	34	495	38	526	717
Msa0015660	AT4G14350.4	71.837	490	109	4	34	495	38	526	717
Msa0015660	AT2G20470.3	62.235	519	157	8	1	483	1	516	653
Msa0015660	AT2G20470.2	61.996	521	159	8	1	485	1	518	652
Msa0015660	AT2G20470.1	61.996	521	159	8	1	485	1	518	652
Msa0015660	AT1G03920.1	64.286	490	144	6	1	464	1	485	635
Msa0015660	AT1G03920.3	64.286	490	144	6	1	464	1	485	635

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Find 114 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCAGAGATGCTTCGTAG+AGG	0.680348	1_1:-25241371	Msa0015660:CDS
AAATGGAAGCTGCAAGGCGC+TGG	0.485731	1_1:-25242117	Msa0015660:CDS
AAATTTCGAGAAATTTGAAG+AGG	0.589108	1_1:-25239205	Msa0015660:intron
AACAGCAGAAACTGGAGCAT+TGG	0.521632	1_1:-25240631	Msa0015660:CDS
AACGTCATCATATCTCCACC+GGG	0.657380	1_1:+25241148	None:intergenic
AACTTCTGGAGCAATATAAT+CGG	0.385695	1_1:+25240146	None:intergenic
AACTTGCTTCTGGATAGAAA+TGG	0.545939	1_1:-25240791	Msa0015660:CDS
AAGCAAGTTCATCACTTTGA+AGG	0.415965	1_1:+25240672	None:intergenic
AAGCAGAGGCTTGGAACTAA+AGG	0.513672	1_1:-25239410	Msa0015660:CDS
AAGGATATTCTTACCAAATA+AGG	0.292170	1_1:+25237813	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTAGCATTATATGCAAACAA+TGG	-	chr1_1:25237947-25237966	Msa0015660:intron	30.0%
TGATTTCTTAAGCTTCTTCA+TGG	+	chr1_1:25238372-25238391	None:intergenic	30.0%
TAAATACTCGTCATCTTGAA+AGG	+	chr1_1:25238568-25238587	None:intergenic	30.0%
GATGAAGCTAAGTTCTATAT+CGG	-	chr1_1:25238660-25238679	Msa0015660:intron	30.0%
ATGAAGCTAAGTTCTATATC+GGG	-	chr1_1:25238661-25238680	Msa0015660:intron	30.0%
CATAATGTATGAAATGCTTG+TGG	-	chr1_1:25239786-25239805	Msa0015660:intron	30.0%
TAATGTATGAAATGCTTGTG+GGG	-	chr1_1:25239788-25239807	Msa0015660:intron	30.0%
TGTATCTTAAATCATCTCCT+AGG	+	chr1_1:25240065-25240084	None:intergenic	30.0%
ACCGAAATAGATGCATTATA+AGG	+	chr1_1:25240193-25240212	None:intergenic	30.0%
TCTGGTGATAGTTTATCTTT+CGG	+	chr1_1:25240290-25240309	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	25237642	25242137	25237642	ID=Msa0015660;Name=Msa0015660
chr1_1	mRNA	25237642	25242137	25237642	ID=Msa0015660-mRNA-1;Parent=Msa0015660;Name=Msa0015660-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0\|0.09\|0\|0.83\|0.90\|0.91\|12\|0\|502
chr1_1	exon	25241929	25242137	25241929	ID=Msa0015660-mRNA-1:exon:8774;Parent=Msa0015660-mRNA-1
chr1_1	exon	25241578	25241752	25241578	ID=Msa0015660-mRNA-1:exon:8773;Parent=Msa0015660-mRNA-1
chr1_1	exon	25241367	25241450	25241367	ID=Msa0015660-mRNA-1:exon:8772;Parent=Msa0015660-mRNA-1
chr1_1	exon	25241046	25241287	25241046	ID=Msa0015660-mRNA-1:exon:8771;Parent=Msa0015660-mRNA-1
chr1_1	exon	25240607	25240829	25240607	ID=Msa0015660-mRNA-1:exon:8770;Parent=Msa0015660-mRNA-1
chr1_1	exon	25240111	25240190	25240111	ID=Msa0015660-mRNA-1:exon:8769;Parent=Msa0015660-mRNA-1
chr1_1	exon	25239924	25240008	25239924	ID=Msa0015660-mRNA-1:exon:8768;Parent=Msa0015660-mRNA-1
chr1_1	exon	25239394	25239522	25239394	ID=Msa0015660-mRNA-1:exon:8767;Parent=Msa0015660-mRNA-1
chr1_1	exon	25239206	25239319	25239206	ID=Msa0015660-mRNA-1:exon:8766;Parent=Msa0015660-mRNA-1
chr1_1	exon	25239046	25239103	25239046	ID=Msa0015660-mRNA-1:exon:8765;Parent=Msa0015660-mRNA-1
chr1_1	exon	25237827	25237877	25237827	ID=Msa0015660-mRNA-1:exon:8764;Parent=Msa0015660-mRNA-1
chr1_1	exon	25237642	25237700	25237642	ID=Msa0015660-mRNA-1:exon:8763;Parent=Msa0015660-mRNA-1
chr1_1	CDS	25241929	25242137	25241929	ID=Msa0015660-mRNA-1:cds;Parent=Msa0015660-mRNA-1
chr1_1	CDS	25241578	25241752	25241578	ID=Msa0015660-mRNA-1:cds;Parent=Msa0015660-mRNA-1
chr1_1	CDS	25241367	25241450	25241367	ID=Msa0015660-mRNA-1:cds;Parent=Msa0015660-mRNA-1
chr1_1	CDS	25241046	25241287	25241046	ID=Msa0015660-mRNA-1:cds;Parent=Msa0015660-mRNA-1
chr1_1	CDS	25240607	25240829	25240607	ID=Msa0015660-mRNA-1:cds;Parent=Msa0015660-mRNA-1
chr1_1	CDS	25240111	25240190	25240111	ID=Msa0015660-mRNA-1:cds;Parent=Msa0015660-mRNA-1
chr1_1	CDS	25239924	25240008	25239924	ID=Msa0015660-mRNA-1:cds;Parent=Msa0015660-mRNA-1
chr1_1	CDS	25239394	25239522	25239394	ID=Msa0015660-mRNA-1:cds;Parent=Msa0015660-mRNA-1
chr1_1	CDS	25239206	25239319	25239206	ID=Msa0015660-mRNA-1:cds;Parent=Msa0015660-mRNA-1
chr1_1	CDS	25239046	25239103	25239046	ID=Msa0015660-mRNA-1:cds;Parent=Msa0015660-mRNA-1
chr1_1	CDS	25237827	25237877	25237827	ID=Msa0015660-mRNA-1:cds;Parent=Msa0015660-mRNA-1
chr1_1	CDS	25237642	25237700	25237642	ID=Msa0015660-mRNA-1:cds;Parent=Msa0015660-mRNA-1

Gene Sequence

>Msa0015660

ATGGAAGCTGCAAGGCGCTGGTTTAGAAAGCGTTGGTTAAAAAAGAAGGAAGCTACAAGCACGTCAAATGGTAATCAGTGTTTGGCGCTGGACGTAGTAAATGAAGAACCACCTTCAAATGAAACTAAACTGAAGGTTGAAGCTGCGAAGCATTTCGTAGAAAGGTATTATAAGAACCAGAAGCAGATCCAGCAGGAGAGGATAGAAAGACGTAATATTCTAGAAAACAAATTGGCCGATGCTGAAGTATCCAAGGAAGACAAGAAAAATTTGCTTAAGAATTTTGAGGAAAAGGAGACAGAAATCATGCGCCGTCAGAGACTTAAGATAGGTGCTGATGACTTTGAGCCCCTGACTATGATTGGGAAGGGTGCATTTGGAGAGGTTAGAATCTGCCGAGAGAAGACAACTGGTCAGGTATATGCCATGAAGAAGCTTAAGAAATCAGAGATGCTTCGTAGAGGACAGGTTGAATATGTCAAATCTGAAAGGAACCTTCTTGCAGAAGTTGATAGCAATTGCATTGTAAGACTTTATTGTTCCTTTCAAGATGACGAGTATTTATATCTCATAATGGAGTATCTACCCGGTGGAGATATGATGACGTTGCTGATGCGGAAAGAAGTACTGACTGAAGATGAAGCTAAGTTCTATATCGGGGAGACTGTGCTAGCCATAGAGTCTATTCATAAACATAATTATATTCATAGAGATATCAAGCCCGACAACTTGCTTCTGGATAGAAATGGTCACGTGAAATTATCAGATTTTGGATTATGTAAGCCGCTAGACTGCAGTAACCTGCAGGAAAAAGACTTATCTGATGGAGTTAACAGAAGTGGAGTCCTTCAAAGTGATGAACTTGCTTTATCTCCTAACCAATCACAACAGCAGAAACTGGAGCATTGGCGGAAAAATCGCAGCAGAATGCTGGCCTATTCTACGGTTGGAACACCCGATTATATTGCTCCAGAAGTTATTCTGAAGAGAGGATATGGCGTGGAATGTGATTGGTGGTCTCTTGGAGTCATAATGTATGAAATGCTTGTGGGGTATCCACCATTTCATTCAGATGATACAAAGACAACGTGTAGAAAGATAGCACATTGGAAAACTTATTTAAAATTTCCGAAAGATAAACTATCACCAGAGGCAAAGGATCTTATTTGTCGTCTCCTATGTAATGCGAAGCAGAGGCTTGGAACTAAAGGAGCTGATGAAATAAAGGCTCACCCATGGTTCAAAGTAGTTGAATGGGAGAAATTGTACCAAATGAGAGCTCCTTTTATTCCTAAGGTCAATGATGAATTGGATACTCAAAATTTCGAGAAATTTGAAGAGGAGGACCAGCAAACTGAACCTTCGCCTAAGGCAGGGCCGTGGAGAAAGGTTAGTTTTTTTGAACTGAAGAAGACAAAACCTAAAAGGCCATCTATCAAGTCCTTATTTGAGGATGAATCAGCTAAGGCAGCTTCTTCTCATCAACCAGCTAGAGGGAAAGAAAATTGA

Protein sequence

>Msa0015660

MEAARRWFRKRWLKKKEATSTSNGNQCLALDVVNEEPPSNETKLKVEAAKHFVERYYKNQKQIQQERIERRNILENKLADAEVSKEDKKNLLKNFEEKETEIMRRQRLKIGADDFEPLTMIGKGAFGEVRICREKTTGQVYAMKKLKKSEMLRRGQVEYVKSERNLLAEVDSNCIVRLYCSFQDDEYLYLIMEYLPGGDMMTLLMRKEVLTEDEAKFYIGETVLAIESIHKHNYIHRDIKPDNLLLDRNGHVKLSDFGLCKPLDCSNLQEKDLSDGVNRSGVLQSDELALSPNQSQQQKLEHWRKNRSRMLAYSTVGTPDYIAPEVILKRGYGVECDWWSLGVIMYEMLVGYPPFHSDDTKTTCRKIAHWKTYLKFPKDKLSPEAKDLICRLLCNAKQRLGTKGADEIKAHPWFKVVEWEKLYQMRAPFIPKVNDELDTQNFEKFEEEDQQTEPSPKAGPWRKVSFFELKKTKPKRPSIKSLFEDESAKAASSHQPARGKEN*