Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0015760 | sp|Q8L3W1|VRN1_ARATH | 25.075 | 335 | 194 | 13 | 12 | 300 | 6 | 329 | 1.10e-19 | 91.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0015760 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0015760 | MtrunA17_Chr4g0067431 | 63.344 | 311 | 102 | 4 | 1 | 303 | 1 | 307 | 2.85e-137 | 391 |
| Msa0015760 | MtrunA17_Chr1g0163221 | 56.958 | 309 | 104 | 8 | 1 | 303 | 1 | 286 | 8.96e-98 | 292 |
| Msa0015760 | MtrunA17_Chr6g0467351 | 62.712 | 236 | 70 | 4 | 1 | 228 | 1 | 226 | 3.09e-93 | 276 |
| Msa0015760 | MtrunA17_Chr1g0163061 | 55.094 | 265 | 69 | 3 | 1 | 215 | 1 | 265 | 2.89e-71 | 221 |
| Msa0015760 | MtrunA17_Chr1g0163131 | 29.582 | 311 | 184 | 16 | 8 | 302 | 14 | 305 | 4.15e-28 | 110 |
| Msa0015760 | MtrunA17_Chr3g0131891 | 31.544 | 298 | 165 | 12 | 10 | 293 | 17 | 289 | 6.03e-28 | 110 |
| Msa0015760 | MtrunA17_Chr1g0163071 | 28.223 | 287 | 178 | 8 | 28 | 297 | 2 | 277 | 2.22e-27 | 108 |
| Msa0015760 | MtrunA17_Chr1g0163251 | 27.891 | 294 | 168 | 10 | 12 | 295 | 9 | 268 | 3.24e-25 | 104 |
| Msa0015760 | MtrunA17_Chr3g0103181 | 28.383 | 303 | 171 | 11 | 10 | 303 | 10 | 275 | 4.83e-25 | 101 |
| Msa0015760 | MtrunA17_Chr1g0163261 | 27.891 | 294 | 179 | 9 | 8 | 295 | 5 | 271 | 2.03e-23 | 97.8 |
| Msa0015760 | MtrunA17_Chr1g0208771 | 24.910 | 277 | 186 | 7 | 27 | 293 | 12 | 276 | 3.99e-23 | 99.0 |
| Msa0015760 | MtrunA17_Chr1g0163181 | 28.826 | 281 | 177 | 11 | 21 | 293 | 14 | 279 | 4.12e-23 | 98.6 |
| Msa0015760 | MtrunA17_Chr3g0103151 | 37.908 | 153 | 81 | 6 | 10 | 153 | 10 | 157 | 5.39e-23 | 93.2 |
| Msa0015760 | MtrunA17_Chr8g0390841 | 24.658 | 292 | 205 | 6 | 10 | 295 | 37 | 319 | 8.23e-23 | 98.6 |
| Msa0015760 | MtrunA17_Chr7g0233561 | 26.403 | 303 | 184 | 10 | 10 | 293 | 16 | 298 | 3.78e-22 | 94.7 |
| Msa0015760 | MtrunA17_Chr7g0233571 | 42.991 | 107 | 55 | 2 | 10 | 111 | 8 | 113 | 2.41e-21 | 90.5 |
| Msa0015760 | MtrunA17_Chr1g0163201 | 27.018 | 285 | 159 | 9 | 27 | 293 | 18 | 271 | 4.30e-21 | 92.8 |
| Msa0015760 | MtrunA17_Chr6g0467361 | 52.055 | 73 | 35 | 0 | 228 | 300 | 7 | 79 | 6.82e-20 | 82.8 |
| Msa0015760 | MtrunA17_Chr1g0163231 | 26.384 | 307 | 174 | 10 | 1 | 295 | 1 | 267 | 8.51e-20 | 87.8 |
| Msa0015760 | MtrunA17_Chr7g0233521 | 28.522 | 291 | 146 | 12 | 28 | 296 | 2 | 252 | 8.84e-20 | 87.4 |
| Msa0015760 | MtrunA17_Chr7g0233541 | 25.175 | 286 | 179 | 9 | 28 | 296 | 2 | 269 | 9.55e-20 | 87.4 |
| Msa0015760 | MtrunA17_Chr1g0163101 | 32.941 | 170 | 86 | 7 | 9 | 163 | 14 | 170 | 1.71e-19 | 84.3 |
| Msa0015760 | MtrunA17_Chr1g0154161 | 26.246 | 301 | 172 | 10 | 10 | 293 | 28 | 295 | 7.18e-19 | 85.5 |
| Msa0015760 | MtrunA17_Chr1g0171611 | 25.817 | 306 | 169 | 9 | 1 | 297 | 1 | 257 | 4.24e-18 | 82.8 |
| Msa0015760 | MtrunA17_Chr5g0419201 | 31.915 | 188 | 102 | 7 | 1 | 169 | 1 | 181 | 1.22e-17 | 79.3 |
| Msa0015760 | MtrunA17_Chr3g0103171 | 27.083 | 288 | 168 | 10 | 27 | 303 | 5 | 261 | 1.36e-17 | 80.9 |
| Msa0015760 | MtrunA17_Chr3g0103191 | 26.432 | 227 | 134 | 6 | 10 | 230 | 10 | 209 | 1.35e-16 | 77.8 |
| Msa0015760 | MtrunA17_Chr6g0476181 | 33.951 | 162 | 82 | 7 | 28 | 177 | 2 | 150 | 1.48e-16 | 75.9 |
| Msa0015760 | MtrunA17_Chr7g0233531 | 24.828 | 290 | 158 | 9 | 28 | 296 | 2 | 252 | 2.14e-16 | 77.8 |
| Msa0015760 | MtrunA17_Chr1g0163191 | 37.405 | 131 | 62 | 6 | 1 | 122 | 2 | 121 | 9.63e-16 | 73.6 |
| Msa0015760 | MtrunA17_Chr1g0162161 | 36.111 | 144 | 74 | 8 | 28 | 161 | 4 | 139 | 1.06e-15 | 73.6 |
| Msa0015760 | MtrunA17_Chr1g0163081 | 34.711 | 121 | 63 | 5 | 28 | 136 | 6 | 122 | 2.67e-15 | 72.0 |
| Msa0015760 | MtrunA17_Chr1g0154191 | 23.780 | 328 | 201 | 9 | 10 | 293 | 20 | 342 | 1.08e-14 | 73.9 |
| Msa0015760 | MtrunA17_Chr1g0163121 | 32.558 | 129 | 71 | 6 | 26 | 142 | 9 | 133 | 2.99e-14 | 68.9 |
| Msa0015760 | MtrunA17_Chr4g0033961 | 36.842 | 114 | 69 | 2 | 12 | 125 | 6 | 116 | 4.44e-14 | 72.4 |
| Msa0015760 | MtrunA17_Chr3g0077411 | 24.026 | 308 | 164 | 11 | 1 | 293 | 251 | 503 | 6.76e-14 | 72.0 |
| Msa0015760 | MtrunA17_Chr3g0077411 | 30.345 | 145 | 90 | 4 | 11 | 148 | 24 | 164 | 5.45e-11 | 63.2 |
| Msa0015760 | MtrunA17_Chr1g0154151 | 25.899 | 278 | 166 | 10 | 44 | 293 | 36 | 301 | 1.67e-13 | 70.1 |
| Msa0015760 | MtrunA17_Chr1g0154131 | 25.817 | 306 | 165 | 11 | 23 | 300 | 193 | 464 | 7.03e-13 | 68.9 |
| Msa0015760 | MtrunA17_Chr1g0163241 | 32.394 | 142 | 75 | 6 | 15 | 147 | 14 | 143 | 1.37e-12 | 65.1 |
| Msa0015760 | MtrunA17_Chr3g0077461 | 31.013 | 158 | 95 | 4 | 11 | 155 | 236 | 392 | 1.49e-12 | 67.8 |
| Msa0015760 | MtrunA17_Chr1g0163141 | 29.508 | 183 | 105 | 8 | 26 | 188 | 9 | 187 | 1.08e-11 | 62.8 |
| Msa0015760 | MtrunA17_Chr1g0154171 | 25.078 | 319 | 191 | 11 | 13 | 293 | 23 | 331 | 1.11e-11 | 64.7 |
| Msa0015760 | MtrunA17_Chr5g0429931 | 24.648 | 284 | 146 | 10 | 27 | 300 | 10 | 235 | 1.13e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0015760 | AT3G18990.1 | 25.075 | 335 | 194 | 13 | 12 | 300 | 6 | 329 | 1.12e-20 | 91.3 |
| Msa0015760 | AT3G18990.2 | 25.075 | 335 | 194 | 13 | 12 | 300 | 6 | 329 | 1.36e-20 | 91.3 |
| Msa0015760 | AT1G49475.1 | 37.097 | 124 | 70 | 4 | 5 | 122 | 26 | 147 | 3.43e-14 | 70.5 |
| Msa0015760 | AT3G18960.1 | 31.250 | 112 | 70 | 3 | 2 | 107 | 19 | 129 | 1.31e-13 | 68.9 |
| Msa0015760 | AT3G18960.2 | 31.250 | 112 | 70 | 3 | 2 | 107 | 19 | 129 | 1.40e-13 | 68.6 |
| Msa0015760 | AT4G01580.1 | 27.083 | 144 | 99 | 3 | 2 | 140 | 19 | 161 | 8.39e-13 | 66.2 |
Find 38 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTAAACAATTCAGAATAAA+TGG | 0.142583 | 1_1:+25403482 | Msa0015760:CDS |
| TTGATGACAAAGATAGAAAA+TGG | 0.181722 | 1_1:+25403435 | Msa0015760:CDS |
| CATGCGAAGCAATCTTTATC+AGG | 0.243715 | 1_1:-25402278 | None:intergenic |
| GCTGACCATAATGTTAAATT+TGG | 0.262407 | 1_1:+25403524 | Msa0015760:CDS |
| TTACTGAAAAGAAAGTTTAT+TGG | 0.274412 | 1_1:+25401693 | Msa0015760:CDS |
| TGCCTCGTAGCAAAATTATT+TGG | 0.278239 | 1_1:-25403377 | None:intergenic |
| TCTGAGTGATTCACAACTTT+TGG | 0.293072 | 1_1:+25401781 | Msa0015760:CDS |
| GAAGACGGTGATGAAGATTT+TGG | 0.298750 | 1_1:-25401971 | None:intergenic |
| TACTGAAAAGAAAGTTTATT+GGG | 0.299312 | 1_1:+25401694 | Msa0015760:CDS |
| TTAGGAAGTCGTAGAGTAAC+TGG | 0.331524 | 1_1:-25401668 | None:intergenic |
| CATCACCAAATTTAACATTA+TGG | 0.341952 | 1_1:-25403529 | None:intergenic |
| AAACTAGTGATTATGATGTT+TGG | 0.387209 | 1_1:+25401720 | Msa0015760:CDS |
| TACCCTTCAAGAAGGAAAAC+TGG | 0.397147 | 1_1:+25401399 | Msa0015760:CDS |
| TGTCTTCTCACAAAACTTGC+GGG | 0.410110 | 1_1:-25401626 | None:intergenic |
| CTAAACAATTCAGAATAAAT+GGG | 0.412198 | 1_1:+25403483 | Msa0015760:CDS |
| TTTATTCTGAATTGTTTAGT+TGG | 0.418278 | 1_1:-25403479 | None:intergenic |
| TCTTCACTAATTTCTCTTGA+AGG | 0.423792 | 1_1:-25401875 | None:intergenic |
| TGATGACAAAGATAGAAAAT+GGG | 0.439585 | 1_1:+25403436 | Msa0015760:CDS |
| ATACATGGAAAATGATCTCT+TGG | 0.468132 | 1_1:+25402316 | Msa0015760:CDS |
| TATGAAATGTTGCATGTGCT+TGG | 0.471551 | 1_1:-25402063 | None:intergenic |
| CTTCACTAATTTCTCTTGAA+GGG | 0.483268 | 1_1:-25401874 | None:intergenic |
| TATGATGCAAAAGGCATACA+TGG | 0.492834 | 1_1:+25402301 | Msa0015760:CDS |
| ATCCAATTAGTAGTCTCAAA+AGG | 0.494683 | 1_1:+25404337 | Msa0015760:intron |
| CTTCGCATGTATGATGCAAA+AGG | 0.497440 | 1_1:+25402292 | Msa0015760:CDS |
| CTTGAAAGTACCCTTCAAGA+AGG | 0.526405 | 1_1:+25401391 | Msa0015760:CDS |
| TCTTCTCATGAACCTGATCA+TGG | 0.532265 | 1_1:+25401346 | Msa0015760:CDS |
| ATGTCTTCTCACAAAACTTG+CGG | 0.538262 | 1_1:-25401627 | None:intergenic |
| TAGTTCTCTTATAGTTGTTG+AGG | 0.538518 | 1_1:+25401922 | Msa0015760:CDS |
| TTGCTACGAGGCATCTGCAA+AGG | 0.565526 | 1_1:+25403387 | Msa0015760:CDS |
| AGGCATCTGCAAAGGATGGA+AGG | 0.586157 | 1_1:+25403395 | Msa0015760:CDS |
| TAAACAATTCAGAATAAATG+GGG | 0.597019 | 1_1:+25403484 | Msa0015760:CDS |
| ATTTAACATTATGGTCAGCA+CGG | 0.603137 | 1_1:-25403520 | None:intergenic |
| ATGCGAAGCAATCTTTATCA+GGG | 0.607508 | 1_1:-25402277 | None:intergenic |
| TTTGTGAGAAGACATTGGCA+AGG | 0.610981 | 1_1:+25401635 | Msa0015760:CDS |
| TACGAGGCATCTGCAAAGGA+TGG | 0.619258 | 1_1:+25403391 | Msa0015760:CDS |
| TAGGAAGTCGTAGAGTAACT+GGG | 0.629187 | 1_1:-25401667 | None:intergenic |
| GAGGATCCTTCATCTTCGCG+AGG | 0.649374 | 1_1:+25401941 | Msa0015760:CDS |
| AAACAATTCAGAATAAATGG+GGG | 0.702685 | 1_1:+25403485 | Msa0015760:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTAATCTTATTTATGT+TGG | + | chr1_1:25402920-25402939 | Msa0015760:intron | 10.0% |
| !! | ATAAAAAAAAATATTCACTA+CGG | + | chr1_1:25403003-25403022 | Msa0015760:intron | 10.0% |
| !!! | TAAAAAAAATGTTCTAAAAA+AGG | - | chr1_1:25403696-25403715 | None:intergenic | 10.0% |
| !!! | TTTAAAATAATGAATAAGTA+AGG | + | chr1_1:25404098-25404117 | Msa0015760:intron | 10.0% |
| !!! | GCTAATTAATACTTTTTTTT+TGG | + | chr1_1:25402171-25402190 | Msa0015760:intron | 15.0% |
| !!! | AACATATACTACTTTTTTTT+TGG | + | chr1_1:25402340-25402359 | Msa0015760:intron | 15.0% |
| !! | TAATTTATGGTATAATTCAA+TGG | - | chr1_1:25402406-25402425 | None:intergenic | 15.0% |
| !! | AAAGAAATATTATTACAAAG+TGG | - | chr1_1:25402432-25402451 | None:intergenic | 15.0% |
| !! | TAAAAAAAAATATTCACTAC+GGG | + | chr1_1:25403004-25403023 | Msa0015760:intron | 15.0% |
| !! | TAAAATTACCTTCAAAAATA+GGG | - | chr1_1:25403638-25403657 | None:intergenic | 15.0% |
| !! | ATAAAATTACCTTCAAAAAT+AGG | - | chr1_1:25403639-25403658 | None:intergenic | 15.0% |
| !!! | ACTTTCTTTTCAGTAATATT+AGG | - | chr1_1:25401689-25401708 | None:intergenic | 20.0% |
| !! | TTACTGAAAAGAAAGTTTAT+TGG | + | chr1_1:25401693-25401712 | Msa0015760:CDS | 20.0% |
| !! | TACTGAAAAGAAAGTTTATT+GGG | + | chr1_1:25401694-25401713 | Msa0015760:CDS | 20.0% |
| !!! | TTCTTATAAACTTTTGAAGA+CGG | - | chr1_1:25401989-25402008 | None:intergenic | 20.0% |
| !!! | TGCAACATTTCATAATTTTA+AGG | + | chr1_1:25402072-25402091 | Msa0015760:CDS | 20.0% |
| !!! | AATTTTAAGGATATTCACAA+AGG | + | chr1_1:25402085-25402104 | Msa0015760:CDS | 20.0% |
| !!! | TTTTTTTGGTGAAAATATTC+AGG | + | chr1_1:25402185-25402204 | Msa0015760:intron | 20.0% |
| !!! | TACTTTTTTTTTGGTGAATA+TGG | + | chr1_1:25402349-25402368 | Msa0015760:intron | 20.0% |
| !!! | CTGTATCTATGTTTTAAAAT+CGG | - | chr1_1:25402584-25402603 | None:intergenic | 20.0% |
| !! | TTATGGTATGAAAAATCAAA+TGG | - | chr1_1:25402840-25402859 | None:intergenic | 20.0% |
| !! | AAAATTAAGTGATATGTGTT+GGG | - | chr1_1:25402906-25402925 | None:intergenic | 20.0% |
| !! | TAAAATTAAGTGATATGTGT+TGG | - | chr1_1:25402907-25402926 | None:intergenic | 20.0% |
| !!! | TCCATTTAGTCATTTTATTT+TGG | + | chr1_1:25403294-25403313 | Msa0015760:intron | 20.0% |
| !! | ACCAAAATAAAATGACTAAA+TGG | - | chr1_1:25403298-25403317 | None:intergenic | 20.0% |
| !!! | TAGTCATTTTATTTTGGTTT+TGG | + | chr1_1:25403300-25403319 | Msa0015760:intron | 20.0% |
| !! | TTTATTCTGAATTGTTTAGT+TGG | - | chr1_1:25403482-25403501 | None:intergenic | 20.0% |
| !! | ACTAAACAATTCAGAATAAA+TGG | + | chr1_1:25403482-25403501 | Msa0015760:CDS | 20.0% |
| !! | CTAAACAATTCAGAATAAAT+GGG | + | chr1_1:25403483-25403502 | Msa0015760:CDS | 20.0% |
| !! | TAAACAATTCAGAATAAATG+GGG | + | chr1_1:25403484-25403503 | Msa0015760:CDS | 20.0% |
| !! | AATGGTAAAAACAAATATGA+TGG | - | chr1_1:25403669-25403688 | None:intergenic | 20.0% |
| !!! | ATCATACTTTCTTTTTTTTG+TGG | + | chr1_1:25403720-25403739 | Msa0015760:intron | 20.0% |
| !! | GATAATGCATAAAATATGTA+AGG | - | chr1_1:25403768-25403787 | None:intergenic | 20.0% |
| !! | ACTAAACTACTTGAAAAAAA+GGG | - | chr1_1:25404063-25404082 | None:intergenic | 20.0% |
| !! | ACAATTCAATCTATATAGTT+TGG | - | chr1_1:25404195-25404214 | None:intergenic | 20.0% |
| !! | AGTTATTCACTTATTGATAT+AGG | + | chr1_1:25404274-25404293 | Msa0015760:intron | 20.0% |
| ! | CAAGAATAATCTTGAAAAAG+TGG | - | chr1_1:25401375-25401394 | None:intergenic | 25.0% |
| ! | TAATCGTTCATAGTTTATGT+CGG | + | chr1_1:25401532-25401551 | Msa0015760:intron | 25.0% |
| ! | AAACTAGTGATTATGATGTT+TGG | + | chr1_1:25401720-25401739 | Msa0015760:CDS | 25.0% |
| ! | TTATCTCTAATCCACATTTA+CGG | - | chr1_1:25401850-25401869 | None:intergenic | 25.0% |
| !! | TAGATTCTTTATGCTCTTTT+AGG | - | chr1_1:25402024-25402043 | None:intergenic | 25.0% |
| !! | TCTAAATTTTCTCTTATTCC+TGG | + | chr1_1:25402144-25402163 | Msa0015760:intron | 25.0% |
| ! | TACAAAGTGGCATTAATTTA+TGG | - | chr1_1:25402419-25402438 | None:intergenic | 25.0% |
| !!! | CGATTTTAAAACATAGATAC+AGG | + | chr1_1:25402582-25402601 | Msa0015760:intron | 25.0% |
| ! | AACATGTATGACTTAAGTTA+TGG | - | chr1_1:25402857-25402876 | None:intergenic | 25.0% |
| ! | ACTATGAAATTACTTCTCTA+TGG | + | chr1_1:25402960-25402979 | Msa0015760:intron | 25.0% |
| ! | CTATGAAATTACTTCTCTAT+GGG | + | chr1_1:25402961-25402980 | Msa0015760:intron | 25.0% |
| ! | TGAGAATTGAGGATAAAAAT+AGG | + | chr1_1:25403124-25403143 | Msa0015760:intron | 25.0% |
| ! | GAGAATTGAGGATAAAAATA+GGG | + | chr1_1:25403125-25403144 | Msa0015760:intron | 25.0% |
| ! | CTTTCAATCATATGAATGAA+TGG | - | chr1_1:25403262-25403281 | None:intergenic | 25.0% |
| !! | TTGATGACAAAGATAGAAAA+TGG | + | chr1_1:25403435-25403454 | Msa0015760:CDS | 25.0% |
| ! | TGATGACAAAGATAGAAAAT+GGG | + | chr1_1:25403436-25403455 | Msa0015760:CDS | 25.0% |
| ! | AAACAATTCAGAATAAATGG+GGG | + | chr1_1:25403485-25403504 | Msa0015760:CDS | 25.0% |
| ! | CATCACCAAATTTAACATTA+TGG | - | chr1_1:25403532-25403551 | None:intergenic | 25.0% |
| !! | TACTATTTTCTCCATAGAAA+AGG | + | chr1_1:25403601-25403620 | Msa0015760:intron | 25.0% |
| !!! | TGTTCTAAAAAAGGTAGAAA+TGG | - | chr1_1:25403687-25403706 | None:intergenic | 25.0% |
| !!! | ATACTTTCTTTTTTTTGTGG+TGG | + | chr1_1:25403723-25403742 | Msa0015760:intron | 25.0% |
| ! | CACTAAACTACTTGAAAAAA+AGG | - | chr1_1:25404064-25404083 | None:intergenic | 25.0% |
| !!! | CTTTTTTTCAAGTAGTTTAG+TGG | + | chr1_1:25404062-25404081 | Msa0015760:intron | 25.0% |
| ! | ATATAACAATGCATTGTCTA+GGG | + | chr1_1:25404149-25404168 | Msa0015760:intron | 25.0% |
| !!! | AGATTGAATTGTTTTGAACA+AGG | + | chr1_1:25404203-25404222 | Msa0015760:intron | 25.0% |
| !!! | TATGATGTTTGGTTTTGCAA+TGG | + | chr1_1:25401731-25401750 | Msa0015760:CDS | 30.0% |
| CTTCACTAATTTCTCTTGAA+GGG | - | chr1_1:25401877-25401896 | None:intergenic | 30.0% | |
| TCTTCACTAATTTCTCTTGA+AGG | - | chr1_1:25401878-25401897 | None:intergenic | 30.0% | |
| TAGTTCTCTTATAGTTGTTG+AGG | + | chr1_1:25401922-25401941 | Msa0015760:CDS | 30.0% | |
| TTAAGGATATTCACAAAGGT+TGG | + | chr1_1:25402089-25402108 | Msa0015760:intron | 30.0% | |
| AAGTATTAATTAGCAACACC+AGG | - | chr1_1:25402165-25402184 | None:intergenic | 30.0% | |
| ATACATGGAAAATGATCTCT+TGG | + | chr1_1:25402316-25402335 | Msa0015760:CDS | 30.0% | |
| ! | TGTGCATTGATATCTACATT+AGG | + | chr1_1:25402459-25402478 | Msa0015760:intron | 30.0% |
| ATAGATACAGGACCAATAAT+AGG | + | chr1_1:25402594-25402613 | Msa0015760:intron | 30.0% | |
| AGGTACCTATATCCTATTAT+TGG | - | chr1_1:25402609-25402628 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTTTCCAGCTCCAA+GGG | - | chr1_1:25402760-25402779 | None:intergenic | 30.0% |
| TCAAATGGTGTATATTTGCA+GGG | - | chr1_1:25402825-25402844 | None:intergenic | 30.0% | |
| ATCAAATGGTGTATATTTGC+AGG | - | chr1_1:25402826-25402845 | None:intergenic | 30.0% | |
| GAGAAGTAATTTCATAGTCA+AGG | - | chr1_1:25402958-25402977 | None:intergenic | 30.0% | |
| AAAAATATTCACTACGGGTA+TGG | + | chr1_1:25403009-25403028 | Msa0015760:intron | 30.0% | |
| AAAATATTCACTACGGGTAT+GGG | + | chr1_1:25403010-25403029 | Msa0015760:intron | 30.0% | |
| GAGTAAGTATATGAGAATTG+AGG | + | chr1_1:25403113-25403132 | Msa0015760:intron | 30.0% | |
| ATTGAGGATAAAAATAGGGA+AGG | + | chr1_1:25403129-25403148 | Msa0015760:intron | 30.0% | |
| GAAAACACATAATCCAAAAC+AGG | + | chr1_1:25403349-25403368 | Msa0015760:intron | 30.0% | |
| ! | TTATTTGGTATGACCTGTTT+TGG | - | chr1_1:25403365-25403384 | None:intergenic | 30.0% |
| ! | TACCAAATAATTTTGCTACG+AGG | + | chr1_1:25403375-25403394 | Msa0015760:CDS | 30.0% |
| ATTTAACATTATGGTCAGCA+CGG | - | chr1_1:25403523-25403542 | None:intergenic | 30.0% | |
| GCTGACCATAATGTTAAATT+TGG | + | chr1_1:25403524-25403543 | Msa0015760:CDS | 30.0% | |
| !!! | TTGGTGATGTATGTGTTTTT+AGG | + | chr1_1:25403543-25403562 | Msa0015760:CDS | 30.0% |
| ! | AATGATCATGTCCTTTTCTA+TGG | - | chr1_1:25403615-25403634 | None:intergenic | 30.0% |
| !!! | TGATCATTCCCTATTTTTGA+AGG | + | chr1_1:25403627-25403646 | Msa0015760:intron | 30.0% |
| TGCATAAAATATGTAAGGTC+CGG | - | chr1_1:25403763-25403782 | None:intergenic | 30.0% | |
| TTGCATGTATTGTGTTTGTA+TGG | - | chr1_1:25403836-25403855 | None:intergenic | 30.0% | |
| AGTAAAATGGTAAAGGCAAA+AGG | - | chr1_1:25403908-25403927 | None:intergenic | 30.0% | |
| ! | TTTACCATTTTACTGCTAGA+GGG | + | chr1_1:25403914-25403933 | Msa0015760:intron | 30.0% |
| GAATGATATTGATACTTGCA+TGG | + | chr1_1:25403943-25403962 | Msa0015760:intron | 30.0% | |
| GTTGTTACAATTTCAAGAAG+CGG | + | chr1_1:25403989-25404008 | Msa0015760:intron | 30.0% | |
| GACAATGCATTGTTATATGT+AGG | - | chr1_1:25404147-25404166 | None:intergenic | 30.0% | |
| CATATAACAATGCATTGTCT+AGG | + | chr1_1:25404148-25404167 | Msa0015760:intron | 30.0% | |
| ATCCAATTAGTAGTCTCAAA+AGG | + | chr1_1:25404337-25404356 | Msa0015760:intron | 30.0% | |
| ! | TACCAGTTTTCCTTCTTGAA+GGG | - | chr1_1:25401404-25401423 | None:intergenic | 35.0% |
| ! | TTACCAGTTTTCCTTCTTGA+AGG | - | chr1_1:25401405-25401424 | None:intergenic | 35.0% |
| ATGTCTTCTCACAAAACTTG+CGG | - | chr1_1:25401630-25401649 | None:intergenic | 35.0% | |
| !! | CAAGTTTTGTGAGAAGACAT+TGG | + | chr1_1:25401630-25401649 | Msa0015760:CDS | 35.0% |
| !!! | ATGTTTGGTTTTGCAATGGT+TGG | + | chr1_1:25401735-25401754 | Msa0015760:CDS | 35.0% |
| ! | TCTGAGTGATTCACAACTTT+TGG | + | chr1_1:25401781-25401800 | Msa0015760:CDS | 35.0% |
| TATGAAATGTTGCATGTGCT+TGG | - | chr1_1:25402066-25402085 | None:intergenic | 35.0% | |
| ! | CATAGAGTTTTACGAGAAAG+TGG | + | chr1_1:25402241-25402260 | Msa0015760:CDS | 35.0% |
| ATGCGAAGCAATCTTTATCA+GGG | - | chr1_1:25402280-25402299 | None:intergenic | 35.0% | |
| ! | TATGATGCAAAAGGCATACA+TGG | + | chr1_1:25402301-25402320 | Msa0015760:CDS | 35.0% |
| CAGGACCAATAATAGGATAT+AGG | + | chr1_1:25402601-25402620 | Msa0015760:intron | 35.0% | |
| ! | AGTTCTCTATTTTCCTTCCA+CGG | + | chr1_1:25402695-25402714 | Msa0015760:intron | 35.0% |
| !!! | GTTTTTTTTTTCCAGCTCCA+AGG | - | chr1_1:25402761-25402780 | None:intergenic | 35.0% |
| GGGTAGACTTAAATTAGACT+GGG | - | chr1_1:25402886-25402905 | None:intergenic | 35.0% | |
| TGGGTAGACTTAAATTAGAC+TGG | - | chr1_1:25402887-25402906 | None:intergenic | 35.0% | |
| AAATATTCACTACGGGTATG+GGG | + | chr1_1:25403011-25403030 | Msa0015760:intron | 35.0% | |
| CACAATCCATCATGTAGATT+AGG | - | chr1_1:25403188-25403207 | None:intergenic | 35.0% | |
| TGCCTCGTAGCAAAATTATT+TGG | - | chr1_1:25403380-25403399 | None:intergenic | 35.0% | |
| AATTCAGAATAAATGGGGGT+TGG | + | chr1_1:25403489-25403508 | Msa0015760:CDS | 35.0% | |
| CATAAAATATGTAAGGTCCG+GGG | - | chr1_1:25403761-25403780 | None:intergenic | 35.0% | |
| GCATAAAATATGTAAGGTCC+GGG | - | chr1_1:25403762-25403781 | None:intergenic | 35.0% | |
| ! | TGAGTTTAACTTAGTTGGCA+AGG | - | chr1_1:25403790-25403809 | None:intergenic | 35.0% |
| ! | CATCGTGAGTTTAACTTAGT+TGG | - | chr1_1:25403795-25403814 | None:intergenic | 35.0% |
| CTCTAGCAGTAAAATGGTAA+AGG | - | chr1_1:25403915-25403934 | None:intergenic | 35.0% | |
| ! | CTTTACCATTTTACTGCTAG+AGG | + | chr1_1:25403913-25403932 | Msa0015760:intron | 35.0% |
| ! | ATGAATAAGTAAGGTGTCTG+AGG | + | chr1_1:25404107-25404126 | Msa0015760:intron | 35.0% |
| !!! | AGCCTTTTGAGACTACTAAT+TGG | - | chr1_1:25404342-25404361 | None:intergenic | 35.0% |
| TCTTCTCATGAACCTGATCA+TGG | + | chr1_1:25401346-25401365 | Msa0015760:CDS | 40.0% | |
| AAAAAGTGGACACCATGATC+AGG | - | chr1_1:25401361-25401380 | None:intergenic | 40.0% | |
| !! | CTTGAAAGTACCCTTCAAGA+AGG | + | chr1_1:25401391-25401410 | Msa0015760:CDS | 40.0% |
| TACCCTTCAAGAAGGAAAAC+TGG | + | chr1_1:25401399-25401418 | Msa0015760:CDS | 40.0% | |
| TGTCTTCTCACAAAACTTGC+GGG | - | chr1_1:25401629-25401648 | None:intergenic | 40.0% | |
| TTTGTGAGAAGACATTGGCA+AGG | + | chr1_1:25401635-25401654 | Msa0015760:CDS | 40.0% | |
| TAGGAAGTCGTAGAGTAACT+GGG | - | chr1_1:25401670-25401689 | None:intergenic | 40.0% | |
| TTAGGAAGTCGTAGAGTAAC+TGG | - | chr1_1:25401671-25401690 | None:intergenic | 40.0% | |
| GTGATTGTACTCCGTAAATG+TGG | + | chr1_1:25401836-25401855 | Msa0015760:intron | 40.0% | |
| ! | GAAGACGGTGATGAAGATTT+TGG | - | chr1_1:25401974-25401993 | None:intergenic | 40.0% |
| ! | CTTGGACTTTTCTCTTCTCA+AGG | - | chr1_1:25402048-25402067 | None:intergenic | 40.0% |
| CATGCGAAGCAATCTTTATC+AGG | - | chr1_1:25402281-25402300 | None:intergenic | 40.0% | |
| CTTCGCATGTATGATGCAAA+AGG | + | chr1_1:25402292-25402311 | Msa0015760:CDS | 40.0% | |
| AAAACTCGTCAAATCTGGGT+GGG | - | chr1_1:25402521-25402540 | None:intergenic | 40.0% | |
| AGGGAAAACTCGTCAAATCT+GGG | - | chr1_1:25402525-25402544 | None:intergenic | 40.0% | |
| ACGAGTTTGGATATGAGTTC+GGG | - | chr1_1:25402641-25402660 | None:intergenic | 40.0% | |
| GACGAGTTTGGATATGAGTT+CGG | - | chr1_1:25402642-25402661 | None:intergenic | 40.0% | |
| TTGCATTACAATAGTGCCCT+TGG | + | chr1_1:25402741-25402760 | Msa0015760:intron | 40.0% | |
| GTATATTTGCAGGGACTGAA+TGG | - | chr1_1:25402816-25402835 | None:intergenic | 40.0% | |
| ATCCTCGTTGAGTATGACTA+GGG | + | chr1_1:25403086-25403105 | Msa0015760:intron | 40.0% | |
| GTAGATTAGGCATGGTCAAT+GGG | - | chr1_1:25403175-25403194 | None:intergenic | 40.0% | |
| TGTAGATTAGGCATGGTCAA+TGG | - | chr1_1:25403176-25403195 | None:intergenic | 40.0% | |
| ACCATGCCTAATCTACATGA+TGG | + | chr1_1:25403179-25403198 | Msa0015760:intron | 40.0% | |
| TCCATCATGTAGATTAGGCA+TGG | - | chr1_1:25403183-25403202 | None:intergenic | 40.0% | |
| TGATACTTGCATGGTCAATG+AGG | + | chr1_1:25403952-25403971 | Msa0015760:intron | 40.0% | |
| TTGCATGGTCAATGAGGAAA+AGG | + | chr1_1:25403958-25403977 | Msa0015760:intron | 40.0% | |
| ATGGTCAATGAGGAAAAGGT+TGG | + | chr1_1:25403962-25403981 | Msa0015760:intron | 40.0% | |
| TTCGGTCGGGTAACGAATAT+GGG | - | chr1_1:25402498-25402517 | None:intergenic | 45.0% | |
| GAAAACTCGTCAAATCTGGG+TGG | - | chr1_1:25402522-25402541 | None:intergenic | 45.0% | |
| CAGGGAAAACTCGTCAAATC+TGG | - | chr1_1:25402526-25402545 | None:intergenic | 45.0% | |
| TTCCCTGCTTTGACTGAGTT+TGG | + | chr1_1:25402539-25402558 | Msa0015760:intron | 45.0% | |
| TCCCTGCTTTGACTGAGTTT+GGG | + | chr1_1:25402540-25402559 | Msa0015760:intron | 45.0% | |
| ACCCAAACTCAGTCAAAGCA+GGG | - | chr1_1:25402544-25402563 | None:intergenic | 45.0% | |
| TTTGGATATGAGTTCGGGGT+TGG | - | chr1_1:25402636-25402655 | None:intergenic | 45.0% | |
| CGAGTTTGGATATGAGTTCG+GGG | - | chr1_1:25402640-25402659 | None:intergenic | 45.0% | |
| ATACACCAGAGTGACATCCA+GGG | - | chr1_1:25402664-25402683 | None:intergenic | 45.0% | |
| ATGCAAAAGAGAGAAGCCGA+AGG | - | chr1_1:25402727-25402746 | None:intergenic | 45.0% | |
| CATCCTCGTTGAGTATGACT+AGG | + | chr1_1:25403085-25403104 | Msa0015760:intron | 45.0% | |
| TACCCTAGTCATACTCAACG+AGG | - | chr1_1:25403091-25403110 | None:intergenic | 45.0% | |
| !!! | TCTTTTTTTTGTGGTGGCCG+AGG | + | chr1_1:25403729-25403748 | Msa0015760:intron | 45.0% |
| CCAACCCTCTAGCAGTAAAA+TGG | - | chr1_1:25403921-25403940 | None:intergenic | 45.0% | |
| ! | CCATTTTACTGCTAGAGGGT+TGG | + | chr1_1:25403918-25403937 | Msa0015760:intron | 45.0% |
| !!! | TTTTTTAAATATATTTCAAA+TGG | + | chr1_1:25403860-25403879 | Msa0015760:intron | 5.0% |
| ! | CTTTTGCCTCGCGAAGATGA+AGG | - | chr1_1:25401950-25401969 | None:intergenic | 50.0% |
| GTTCGGTCGGGTAACGAATA+TGG | - | chr1_1:25402499-25402518 | None:intergenic | 50.0% | |
| ! | TCGTCAAATCTGGGTGGGTT+CGG | - | chr1_1:25402516-25402535 | None:intergenic | 50.0% |
| GACCCAAACTCAGTCAAAGC+AGG | - | chr1_1:25402545-25402564 | None:intergenic | 50.0% | |
| !! | ATGAGTTCGGGGTTGGTACT+AGG | - | chr1_1:25402629-25402648 | None:intergenic | 50.0% |
| CTCATATCCAAACTCGTCCC+TGG | + | chr1_1:25402644-25402663 | Msa0015760:intron | 50.0% | |
| CATACACCAGAGTGACATCC+AGG | - | chr1_1:25402665-25402684 | None:intergenic | 50.0% | |
| TACAATAGTGCCCTTGGAGC+TGG | + | chr1_1:25402747-25402766 | Msa0015760:intron | 50.0% | |
| TTAGGCATGGTCAATGGGTG+AGG | - | chr1_1:25403170-25403189 | None:intergenic | 50.0% | |
| ! | TTGCTACGAGGCATCTGCAA+AGG | + | chr1_1:25403387-25403406 | Msa0015760:CDS | 50.0% |
| ! | TACGAGGCATCTGCAAAGGA+TGG | + | chr1_1:25403391-25403410 | Msa0015760:CDS | 50.0% |
| AGGCATCTGCAAAGGATGGA+AGG | + | chr1_1:25403395-25403414 | Msa0015760:CDS | 50.0% | |
| TCAAGAAGCGGCAGCTACAT+TGG | + | chr1_1:25404001-25404020 | Msa0015760:intron | 50.0% | |
| ACCCTATCACGCTCTCTGCT+AGG | + | chr1_1:25401461-25401480 | Msa0015760:intron | 55.0% | |
| ! | CCCTAGCAGAGAGCGTGATA+GGG | - | chr1_1:25401465-25401484 | None:intergenic | 55.0% |
| CCCTATCACGCTCTCTGCTA+GGG | + | chr1_1:25401462-25401481 | Msa0015760:intron | 55.0% | |
| ! | ACCCTAGCAGAGAGCGTGAT+AGG | - | chr1_1:25401466-25401485 | None:intergenic | 55.0% |
| GAGGATCCTTCATCTTCGCG+AGG | + | chr1_1:25401941-25401960 | Msa0015760:CDS | 55.0% | |
| ! | AAATCTGGGTGGGTTCGGTC+GGG | - | chr1_1:25402511-25402530 | None:intergenic | 55.0% |
| ! | CAAATCTGGGTGGGTTCGGT+CGG | - | chr1_1:25402512-25402531 | None:intergenic | 55.0% |
| GTGACATCCAGGGACGAGTT+TGG | - | chr1_1:25402654-25402673 | None:intergenic | 55.0% | |
| CCTTCCACGGCTCATACCTT+CGG | + | chr1_1:25402708-25402727 | Msa0015760:intron | 55.0% | |
| TACGGGTATGGGGATGAGAC+AGG | + | chr1_1:25403021-25403040 | Msa0015760:intron | 55.0% | |
| ACGGGTATGGGGATGAGACA+GGG | + | chr1_1:25403022-25403041 | Msa0015760:intron | 55.0% | |
| AATCTCACCCCCGTCCCTAT+GGG | - | chr1_1:25403057-25403076 | None:intergenic | 55.0% | |
| CTCGTCCCTGGATGTCACTC+TGG | + | chr1_1:25402656-25402675 | Msa0015760:intron | 60.0% | |
| ! | CCGAAGGTATGAGCCGTGGA+AGG | - | chr1_1:25402711-25402730 | None:intergenic | 60.0% |
| ! | GAAGCCGAAGGTATGAGCCG+TGG | - | chr1_1:25402715-25402734 | None:intergenic | 60.0% |
| ACAGGGATGCCCGAACCCAT+AGG | + | chr1_1:25403039-25403058 | Msa0015760:intron | 60.0% | |
| CAGGGATGCCCGAACCCATA+GGG | + | chr1_1:25403040-25403059 | Msa0015760:intron | 60.0% | |
| GATGCCCGAACCCATAGGGA+CGG | + | chr1_1:25403044-25403063 | Msa0015760:intron | 60.0% | |
| ATGCCCGAACCCATAGGGAC+GGG | + | chr1_1:25403045-25403064 | Msa0015760:intron | 60.0% | |
| GAATCTCACCCCCGTCCCTA+TGG | - | chr1_1:25403058-25403077 | None:intergenic | 60.0% | |
| GGCATGGTCAATGGGTGAGG+TGG | - | chr1_1:25403167-25403186 | None:intergenic | 60.0% | |
| AAGGTCCGGGGTTCGAACCT+CGG | - | chr1_1:25403749-25403768 | None:intergenic | 60.0% | |
| TGCCCGAACCCATAGGGACG+GGG | + | chr1_1:25403046-25403065 | Msa0015760:intron | 65.0% | |
| ACCCCCGTCCCTATGGGTTC+GGG | - | chr1_1:25403051-25403070 | None:intergenic | 65.0% | |
| CACCCCCGTCCCTATGGGTT+CGG | - | chr1_1:25403052-25403071 | None:intergenic | 65.0% | |
| GCCCGAACCCATAGGGACGG+GGG | + | chr1_1:25403047-25403066 | Msa0015760:intron | 70.0% | |
| GGTGGCCGAGGTTCGAACCC+CGG | + | chr1_1:25403741-25403760 | Msa0015760:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 25401343 | 25404373 | 25401343 | ID=Msa0015760;Name=Msa0015760 |
| chr1_1 | mRNA | 25401343 | 25404373 | 25401343 | ID=Msa0015760-mRNA-1;Parent=Msa0015760;Name=Msa0015760-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0|0.83|0.6|0.33|6|0|310 |
| chr1_1 | exon | 25401343 | 25401420 | 25401343 | ID=Msa0015760-mRNA-1:exon:8802;Parent=Msa0015760-mRNA-1 |
| chr1_1 | exon | 25401620 | 25401848 | 25401620 | ID=Msa0015760-mRNA-1:exon:8803;Parent=Msa0015760-mRNA-1 |
| chr1_1 | exon | 25401864 | 25402106 | 25401864 | ID=Msa0015760-mRNA-1:exon:8804;Parent=Msa0015760-mRNA-1 |
| chr1_1 | exon | 25402207 | 25402337 | 25402207 | ID=Msa0015760-mRNA-1:exon:8805;Parent=Msa0015760-mRNA-1 |
| chr1_1 | exon | 25403371 | 25403598 | 25403371 | ID=Msa0015760-mRNA-1:exon:8806;Parent=Msa0015760-mRNA-1 |
| chr1_1 | exon | 25404350 | 25404373 | 25404350 | ID=Msa0015760-mRNA-1:exon:8807;Parent=Msa0015760-mRNA-1 |
| chr1_1 | CDS | 25401343 | 25401420 | 25401343 | ID=Msa0015760-mRNA-1:cds;Parent=Msa0015760-mRNA-1 |
| chr1_1 | CDS | 25401620 | 25401848 | 25401620 | ID=Msa0015760-mRNA-1:cds;Parent=Msa0015760-mRNA-1 |
| chr1_1 | CDS | 25401864 | 25402106 | 25401864 | ID=Msa0015760-mRNA-1:cds;Parent=Msa0015760-mRNA-1 |
| chr1_1 | CDS | 25402207 | 25402337 | 25402207 | ID=Msa0015760-mRNA-1:cds;Parent=Msa0015760-mRNA-1 |
| chr1_1 | CDS | 25403371 | 25403598 | 25403371 | ID=Msa0015760-mRNA-1:cds;Parent=Msa0015760-mRNA-1 |
| chr1_1 | CDS | 25404350 | 25404373 | 25404350 | ID=Msa0015760-mRNA-1:cds;Parent=Msa0015760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
