AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0015800

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0015800 MtrunA17_Chr1g0167661 80.315 254 32 2 1 236 1 254 1.01e-147 412
Msa0015800 MtrunA17_Chr1g0167691 80.077 261 21 4 1 236 1 255 2.11e-138 388
Msa0015800 MtrunA17_Chr1g0187761 61.832 262 70 3 1 236 1 258 5.65e-104 301
Msa0015800 MtrunA17_Chr7g0261281 47.500 280 101 6 1 236 1 278 1.42e-74 227
Msa0015800 MtrunA17_Chr7g0274581 46.781 233 92 5 1 229 1 205 1.43e-69 212
Msa0015800 MtrunA17_Chr1g0203411 76.724 116 27 0 1 116 1 116 2.46e-65 204
Msa0015800 MtrunA17_Chr4g0039971 75.214 117 29 0 1 117 2 118 1.00e-62 199
Msa0015800 MtrunA17_Chr2g0281071 73.729 118 30 1 1 117 1 118 5.86e-62 197
Msa0015800 MtrunA17_Chr2g0323411 73.504 117 31 0 1 117 1 117 2.00e-61 195
Msa0015800 MtrunA17_Chr4g0048511 72.881 118 31 1 1 117 1 118 3.64e-61 196
Msa0015800 MtrunA17_Chr7g0217741 72.414 116 32 0 1 116 1 116 5.02e-60 191
Msa0015800 MtrunA17_Chr4g0042671 74.138 116 30 0 1 116 1 116 5.27e-60 194
Msa0015800 MtrunA17_Chr3g0115821 69.492 118 36 0 1 118 1 118 6.63e-60 192
Msa0015800 MtrunA17_Chr7g0275911 70.339 118 35 0 1 118 1 118 1.03e-59 189
Msa0015800 MtrunA17_Chr8g0346561 69.828 116 35 0 1 116 1 116 2.27e-59 189
Msa0015800 MtrunA17_Chr4g0068061 70.690 116 34 0 1 116 1 116 4.90e-59 189
Msa0015800 MtrunA17_Chr8g0349261 70.588 119 33 2 1 117 1 119 5.29e-59 188
Msa0015800 MtrunA17_Chr4g0037141 70.339 118 35 0 1 118 1 118 1.03e-58 187
Msa0015800 MtrunA17_Chr2g0323351 61.589 151 48 3 1 150 1 142 4.77e-58 184
Msa0015800 MtrunA17_Chr6g0453471 47.596 208 75 2 1 174 1 208 1.33e-57 186
Msa0015800 MtrunA17_Chr4g0022891 46.364 220 103 3 1 205 1 220 1.44e-57 182
Msa0015800 MtrunA17_Chr5g0410961 70.085 117 35 0 1 117 1 117 2.08e-57 186
Msa0015800 MtrunA17_Chr4g0022901 62.857 140 49 3 1 137 1 140 9.62e-57 181
Msa0015800 MtrunA17_Chr3g0121241 66.667 114 38 0 5 118 35 148 1.14e-56 182
Msa0015800 MtrunA17_Chr4g0022931 69.231 117 35 1 1 116 1 117 1.94e-56 181
Msa0015800 MtrunA17_Chr4g0070611 63.566 129 42 1 1 124 1 129 2.33e-56 182
Msa0015800 MtrunA17_Chr4g0070641 63.566 129 42 1 1 124 1 129 2.67e-56 177
Msa0015800 MtrunA17_Chr2g0311221 72.477 109 30 0 3 111 5 113 2.77e-56 182
Msa0015800 MtrunA17_Chr5g0395281 67.521 117 38 0 1 117 1 117 5.27e-56 181
Msa0015800 MtrunA17_Chr3g0131121 68.966 116 36 0 1 116 1 116 5.75e-56 180
Msa0015800 MtrunA17_Chr7g0217221 48.515 202 91 4 1 189 1 202 7.31e-56 179
Msa0015800 MtrunA17_Chr3g0092401 57.143 147 59 1 1 143 2 148 1.87e-55 179
Msa0015800 MtrunA17_Chr4g0022911 60.902 133 50 2 1 131 1 133 5.12e-55 177
Msa0015800 MtrunA17_Chr4g0060721 65.517 116 40 0 1 116 2 117 1.23e-54 178
Msa0015800 MtrunA17_Chr6g0453211 68.468 111 35 0 1 111 1 111 2.55e-54 177
Msa0015800 MtrunA17_Chr8g0385321 66.379 116 39 0 1 116 1 116 5.58e-54 176
Msa0015800 MtrunA17_Chr1g0194951 65.517 116 40 0 1 116 1 116 1.79e-53 176
Msa0015800 MtrunA17_Chr3g0103281 64.655 116 41 0 1 116 1 116 8.99e-53 173
Msa0015800 MtrunA17_Chr1g0193371 61.538 130 46 1 1 126 1 130 1.18e-52 174
Msa0015800 MtrunA17_Chr7g0254411 67.241 116 38 0 1 116 1 116 1.54e-52 172
Msa0015800 MtrunA17_Chr1g0151941 63.559 118 42 1 1 117 1 118 1.75e-52 170
Msa0015800 MtrunA17_Chr7g0228891 57.143 140 56 1 1 136 1 140 2.44e-52 170
Msa0015800 MtrunA17_Chr7g0271241 48.259 201 83 5 1 185 1 196 4.11e-52 173
Msa0015800 MtrunA17_Chr4g0057031 64.103 117 42 0 1 117 1 117 1.53e-51 168
Msa0015800 MtrunA17_Chr4g0022881 63.158 114 42 0 1 114 1 114 1.56e-51 167
Msa0015800 MtrunA17_Chr7g0269831 69.828 116 35 0 1 116 1 116 1.58e-51 171
Msa0015800 MtrunA17_Chr1g0193801 64.655 116 41 0 1 116 1 116 1.67e-51 171
Msa0015800 MtrunA17_Chr3g0110351 65.517 116 40 0 1 116 1 116 2.44e-51 169
Msa0015800 MtrunA17_Chr7g0270891 64.655 116 41 0 1 116 1 116 2.53e-51 170
Msa0015800 MtrunA17_Chr5g0434571 65.517 116 40 0 1 116 37 152 9.38e-51 169
Msa0015800 MtrunA17_Chr5g0435101 59.483 116 47 0 2 117 1 116 1.24e-50 164
Msa0015800 MtrunA17_Chr4g0058631 62.393 117 44 0 1 117 1 117 1.65e-49 166
Msa0015800 MtrunA17_Chr5g0400821 52.761 163 68 4 1 160 1 157 1.88e-49 164
Msa0015800 MtrunA17_Chr1g0152011 52.740 146 68 1 1 145 1 146 3.28e-49 164
Msa0015800 MtrunA17_Chr4g0044421 63.248 117 42 1 2 117 1 117 3.89e-49 159
Msa0015800 MtrunA17_Chr2g0309911 60.177 113 45 0 6 118 5 117 7.98e-49 162
Msa0015800 MtrunA17_Chr5g0417821 66.355 107 36 0 11 117 6 112 7.80e-48 159
Msa0015800 MtrunA17_Chr3g0135311 48.718 156 75 2 1 155 1 152 1.72e-47 160
Msa0015800 MtrunA17_Chr4g0028311 60.169 118 46 1 1 117 1 118 3.49e-47 158
Msa0015800 MtrunA17_Chr3g0117091 61.538 117 45 0 1 117 1 117 5.65e-47 159
Msa0015800 MtrunA17_Chr6g0452271 58.120 117 49 0 1 117 1 117 7.24e-47 158
Msa0015800 MtrunA17_Chr1g0211161 60.000 115 46 0 3 117 4 118 1.63e-46 154
Msa0015800 MtrunA17_Chr2g0330041 58.120 117 49 0 1 117 1 117 2.11e-46 158
Msa0015800 MtrunA17_Chr7g0264641 55.285 123 54 1 1 122 1 123 3.59e-46 154
Msa0015800 MtrunA17_Chr8g0342541 56.410 117 51 0 1 117 1 117 4.56e-46 156
Msa0015800 MtrunA17_Chr8g0342521 56.410 117 51 0 1 117 1 117 1.59e-45 155
Msa0015800 MtrunA17_Chr8g0387421 56.897 116 50 0 1 116 1 116 1.91e-45 154
Msa0015800 MtrunA17_Chr2g0327351 61.261 111 42 1 1 110 1 111 3.78e-45 153
Msa0015800 MtrunA17_Chr2g0328771 63.551 107 39 0 12 118 20 126 1.68e-44 151
Msa0015800 MtrunA17_Chr1g0203441 63.462 104 38 0 13 116 14 117 2.09e-44 150
Msa0015800 MtrunA17_Chr4g0054391 52.740 146 67 2 1 144 1 146 2.38e-44 150
Msa0015800 MtrunA17_Chr4g0032401 55.882 136 53 2 12 147 17 145 4.68e-44 150
Msa0015800 MtrunA17_Chr6g0487491 52.593 135 55 2 1 126 1 135 6.45e-44 148
Msa0015800 MtrunA17_Chr6g0470971 58.036 112 47 0 4 115 6 117 7.52e-44 149
Msa0015800 MtrunA17_Chr7g0228231 58.929 112 46 0 12 123 14 125 1.09e-43 146
Msa0015800 MtrunA17_Chr5g0397231 60.185 108 43 0 1 108 1 108 1.32e-43 149
Msa0015800 MtrunA17_Chr4g0072751 61.261 111 42 1 1 110 1 111 1.32e-43 150
Msa0015800 MtrunA17_Chr4g0055981 49.612 129 65 0 9 137 52 180 2.11e-43 146
Msa0015800 MtrunA17_Chr8g0343831 56.897 116 46 1 1 116 1 112 2.72e-43 146
Msa0015800 MtrunA17_Chr3g0080861 62.500 104 39 0 12 115 37 140 6.76e-43 151
Msa0015800 MtrunA17_Chr1g0209661 59.259 108 44 0 8 115 23 130 7.73e-43 147
Msa0015800 MtrunA17_Chr8g0342481 53.279 122 56 1 1 121 1 122 7.99e-43 149
Msa0015800 MtrunA17_Chr8g0354661 62.500 104 39 0 12 115 37 140 9.38e-43 151
Msa0015800 MtrunA17_Chr5g0434911 52.679 112 53 0 7 118 16 127 1.13e-42 145
Msa0015800 MtrunA17_Chr3g0088461 62.963 108 40 0 9 116 19 126 1.32e-42 147
Msa0015800 MtrunA17_Chr6g0450101 51.111 135 62 2 1 133 1 133 2.10e-42 143
Msa0015800 MtrunA17_Chr5g0434931 54.128 109 50 0 10 118 33 141 3.66e-42 144
Msa0015800 MtrunA17_Chr3g0099131 60.577 104 41 0 12 115 41 144 4.97e-42 149
Msa0015800 MtrunA17_Chr7g0240821 50.000 140 68 1 16 155 5 142 8.33e-42 142
Msa0015800 MtrunA17_Chr1g0186061 52.846 123 56 1 13 135 21 141 1.78e-41 142
Msa0015800 MtrunA17_Chr2g0322521 61.682 107 41 0 9 115 26 132 1.82e-41 145
Msa0015800 MtrunA17_Chr2g0294811 67.391 92 30 0 1 92 1 92 2.12e-41 137
Msa0015800 MtrunA17_Chr1g0194291 60.000 105 42 0 11 115 20 124 3.54e-41 141
Msa0015800 MtrunA17_Chr5g0434831 55.556 108 48 0 10 117 5 112 3.64e-41 139
Msa0015800 MtrunA17_Chr1g0154031 60.577 104 41 0 12 115 76 179 3.82e-41 145
Msa0015800 MtrunA17_Chr7g0220341 49.231 130 64 1 11 138 24 153 5.96e-41 141
Msa0015800 MtrunA17_Chr4g0042611 68.182 88 28 0 1 88 1 88 1.01e-40 134
Msa0015800 MtrunA17_Chr1g0168661 54.867 113 51 0 6 118 15 127 1.37e-40 139
Msa0015800 MtrunA17_Chr7g0228991 33.471 242 109 4 10 199 27 268 4.09e-40 139
Msa0015800 MtrunA17_Chr8g0360111 56.863 102 44 0 11 112 24 125 1.60e-39 137
Msa0015800 MtrunA17_Chr5g0434841 53.704 108 50 0 10 117 18 125 3.20e-39 137
Msa0015800 MtrunA17_Chr1g0180391 57.143 105 45 0 12 116 19 123 4.34e-39 135
Msa0015800 MtrunA17_Chr1g0194301 55.769 104 46 0 12 115 33 136 8.85e-39 135
Msa0015800 MtrunA17_Chr7g0247131 78.082 73 16 0 44 116 10 82 3.17e-38 134
Msa0015800 MtrunA17_Chr2g0323321 63.043 92 33 1 1 92 1 91 4.15e-38 129
Msa0015800 MtrunA17_Chr4g0068921 60.194 103 41 0 12 114 24 126 8.35e-38 130
Msa0015800 MtrunA17_Chr2g0293911 60.194 103 41 0 12 114 24 126 3.78e-37 132
Msa0015800 MtrunA17_Chr1g0192411 53.846 104 48 0 12 115 12 115 4.12e-36 131
Msa0015800 MtrunA17_Chr2g0327821 42.568 148 75 2 12 151 6 151 8.47e-36 127
Msa0015800 MtrunA17_Chr5g0440781 51.456 103 49 1 13 114 13 115 1.55e-34 122
Msa0015800 MtrunA17_Chr5g0395221 61.364 88 34 0 1 88 1 88 2.47e-34 118
Msa0015800 MtrunA17_Chr4g0030881 51.818 110 46 1 13 115 8 117 2.99e-34 123
Msa0015800 MtrunA17_Chr5g0440761 51.456 103 49 1 13 114 13 115 9.75e-34 122
Msa0015800 MtrunA17_Chr5g0441141 51.456 103 49 1 13 114 13 115 1.22e-33 122
Msa0015800 MtrunA17_Chr8g0342531 55.056 89 40 0 1 89 1 89 1.76e-32 116
Msa0015800 MtrunA17_Chr8g0342511 55.172 87 39 0 1 87 1 87 4.29e-32 113
Msa0015800 MtrunA17_Chr5g0441131 49.515 103 51 1 13 114 10 112 5.05e-32 115
Msa0015800 MtrunA17_Chr3g0099141 57.831 83 35 0 12 94 40 122 5.60e-32 114
Msa0015800 MtrunA17_Chr4g0013361 43.077 130 72 2 8 136 6 134 7.44e-32 118
Msa0015800 MtrunA17_Chr4g0008551 41.420 169 84 4 14 177 38 196 2.11e-31 118
Msa0015800 MtrunA17_Chr8g0334881 46.903 113 57 2 8 117 6 118 2.15e-31 117
Msa0015800 MtrunA17_Chr8g0342461 54.444 90 40 1 1 89 1 90 1.10e-30 110
Msa0015800 MtrunA17_Chr8g0342471 54.444 90 40 1 1 89 1 90 3.91e-30 109
Msa0015800 MtrunA17_Chr3g0133601 50.000 102 50 1 14 115 37 137 1.99e-29 110
Msa0015800 MtrunA17_Chr6g0454921 50.980 102 49 1 14 115 15 115 1.17e-28 107
Msa0015800 MtrunA17_Chr5g0401731 50.000 102 50 1 14 115 15 115 9.28e-28 107
Msa0015800 MtrunA17_Chr7g0229101 61.429 70 27 0 44 113 4 73 1.42e-26 102
Msa0015800 MtrunA17_Chr4g0053431 47.170 106 47 2 14 115 5 105 1.63e-26 103
Msa0015800 MtrunA17_Chr5g0425591 51.220 82 39 1 13 93 10 91 2.04e-26 98.2
Msa0015800 MtrunA17_Chr5g0434901 63.636 66 24 0 48 113 9 74 2.74e-26 98.6
Msa0015800 MtrunA17_Chr3g0139671 39.416 137 66 2 12 132 83 218 4.84e-26 105
Msa0015800 MtrunA17_Chr3g0139671 35.000 100 63 2 14 112 33 131 1.05e-12 67.0
Msa0015800 MtrunA17_Chr7g0229131 47.475 99 48 1 44 142 4 98 1.04e-25 99.0
Msa0015800 MtrunA17_Chr1g0157731 43.810 105 58 1 12 116 89 192 1.78e-25 104
Msa0015800 MtrunA17_Chr7g0238631 47.619 105 54 1 12 116 111 214 3.04e-25 103
Msa0015800 MtrunA17_Chr7g0238631 33.000 100 65 2 14 112 61 159 1.20e-11 63.9
Msa0015800 MtrunA17_Chr6g0480581 47.525 101 52 1 14 114 4 103 4.02e-25 99.0
Msa0015800 MtrunA17_Chr5g0429661 37.430 179 97 5 12 182 120 291 1.21e-24 100
Msa0015800 MtrunA17_Chr3g0117511 41.739 115 64 2 3 115 170 283 7.34e-24 99.0
Msa0015800 MtrunA17_Chr7g0228531 33.778 225 112 8 14 226 220 419 7.66e-24 98.6
Msa0015800 MtrunA17_Chr6g0453751 47.312 93 40 2 10 93 18 110 7.66e-24 92.8
Msa0015800 MtrunA17_Chr4g0058991 45.098 102 53 2 8 108 203 302 1.78e-23 97.8
Msa0015800 MtrunA17_Chr4g0042501 38.168 131 74 3 14 143 105 229 2.14e-23 97.4
Msa0015800 MtrunA17_Chr5g0417621 37.086 151 83 4 14 158 134 278 2.40e-23 97.4
Msa0015800 MtrunA17_Chr6g0460661 43.299 97 54 1 14 110 16 111 2.20e-21 87.4
Msa0015800 MtrunA17_Chr5g0437321 44.444 99 54 1 14 112 19 116 3.40e-21 89.7
Msa0015800 MtrunA17_Chr3g0125801 44.037 109 58 2 8 115 10 116 4.00e-21 89.4
Msa0015800 MtrunA17_Chr3g0093811 53.425 73 34 0 44 116 14 86 1.05e-20 87.8
Msa0015800 MtrunA17_Chr7g0228481 32.039 206 114 8 14 217 220 401 1.43e-20 89.7
Msa0015800 MtrunA17_Chr7g0254261 43.137 102 57 1 14 115 89 189 3.80e-20 87.8
Msa0015800 MtrunA17_Chr6g0460671 42.157 102 58 1 14 115 99 199 6.28e-20 87.0
Msa0015800 MtrunA17_Chr1g0177901 37.162 148 87 4 24 171 4 145 1.19e-19 84.0
Msa0015800 MtrunA17_Chr5g0397841 45.361 97 52 1 12 108 108 203 1.42e-19 87.0
Msa0015800 MtrunA17_Chr7g0228401 44.211 95 50 2 25 119 290 381 2.66e-19 86.3
Msa0015800 MtrunA17_Chr8g0362231 36.364 132 76 3 17 148 25 148 1.49e-17 80.9
Msa0015800 MtrunA17_Chr7g0238651 35.185 108 68 1 17 122 10 117 1.93e-17 80.1
Msa0015800 MtrunA17_Chr5g0416341 37.190 121 70 2 17 132 29 148 3.21e-17 80.1
Msa0015800 MtrunA17_Chr1g0193901 55.000 60 26 1 10 68 9 68 3.33e-17 74.7
Msa0015800 MtrunA17_Chr1g0193891 55.000 60 26 1 10 68 9 68 3.33e-17 74.7
Msa0015800 MtrunA17_Chr1g0193871 55.000 60 26 1 10 68 9 68 3.33e-17 74.7
Msa0015800 MtrunA17_Chr1g0193881 55.000 60 26 1 10 68 9 68 3.33e-17 74.7
Msa0015800 MtrunA17_Chr7g0247141 64.583 48 16 1 1 47 1 48 6.01e-16 70.1
Msa0015800 MtrunA17_Chr7g0233061 40.777 103 46 4 14 110 180 273 8.33e-16 75.5
Msa0015800 MtrunA17_Chr5g0434871 60.000 45 18 0 74 118 2 46 1.45e-15 69.3
Msa0015800 MtrunA17_Chr5g0421201 34.513 113 52 3 70 160 15 127 5.42e-11 59.7
Msa0015800 MtrunA17_Chr7g0274481 29.752 121 79 3 12 130 5 121 7.47e-11 61.6
Msa0015800 MtrunA17_Chr2g0322831 56.410 39 17 0 70 108 34 72 9.74e-11 56.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0015800 AT3G23250.1 49.466 281 94 8 1 233 1 281 2.64e-80 242
Msa0015800 AT2G31180.1 50.388 258 97 6 1 236 1 249 1.28e-76 232
Msa0015800 AT1G06180.1 51.373 255 96 6 1 236 1 246 5.03e-74 225
Msa0015800 AT3G61250.1 56.322 174 66 2 1 164 1 174 9.82e-65 203
Msa0015800 AT1G16490.1 51.471 204 83 6 3 194 5 204 2.34e-64 201
Msa0015800 AT4G21440.1 74.359 117 30 0 1 117 1 117 3.24e-64 203
Msa0015800 AT1G79180.1 49.778 225 96 7 3 220 5 219 2.03e-63 199
Msa0015800 AT4G05100.1 74.576 118 29 1 1 117 1 118 2.09e-62 198
Msa0015800 AT5G16770.4 73.504 117 31 0 1 117 1 117 3.53e-62 197
Msa0015800 AT5G16770.3 73.504 117 31 0 1 117 1 117 3.53e-62 197
Msa0015800 AT5G16770.1 73.504 117 31 0 1 117 1 117 6.75e-62 197
Msa0015800 AT5G16770.2 73.504 117 31 0 1 117 1 117 6.75e-62 197
Msa0015800 AT3G02940.2 71.795 117 33 0 1 117 1 117 3.24e-61 194
Msa0015800 AT3G02940.1 71.795 117 33 0 1 117 1 117 7.09e-61 194
Msa0015800 AT3G02940.3 71.795 117 33 0 1 117 1 117 7.09e-61 194
Msa0015800 AT4G28110.1 69.748 119 36 0 1 119 1 119 9.13e-61 192
Msa0015800 AT3G01140.2 72.650 117 32 0 1 117 1 117 1.50e-60 194
Msa0015800 AT3G01140.1 71.795 117 33 0 1 117 44 160 1.55e-59 192
Msa0015800 AT2G16720.1 70.339 118 35 0 1 118 1 118 2.16e-59 189
Msa0015800 AT5G15310.1 71.795 117 33 0 1 117 1 117 2.93e-59 190
Msa0015800 AT5G15310.2 71.795 117 33 0 1 117 1 117 3.13e-59 189
Msa0015800 AT5G15310.4 71.795 117 33 0 1 117 1 117 3.52e-59 187
Msa0015800 AT3G13540.1 45.045 222 115 3 4 218 15 236 4.99e-59 187
Msa0015800 AT1G56160.1 71.930 114 32 0 3 116 5 118 7.90e-59 188
Msa0015800 AT5G10280.1 70.085 117 35 0 1 117 1 117 1.30e-58 189
Msa0015800 AT4G38620.1 69.492 118 36 0 1 118 1 118 1.58e-58 187
Msa0015800 AT1G35515.1 67.797 118 38 0 1 118 1 118 5.71e-58 183
Msa0015800 AT1G34670.1 70.085 117 35 0 1 117 1 117 6.86e-58 187
Msa0015800 AT1G22640.1 67.797 118 38 0 1 118 1 118 7.75e-58 184
Msa0015800 AT5G49330.1 70.690 116 34 0 1 116 1 116 1.00e-57 186
Msa0015800 AT4G09460.1 60.714 140 52 1 1 137 1 140 1.08e-57 183
Msa0015800 AT3G12820.1 70.435 115 34 0 3 117 5 119 3.20e-57 182
Msa0015800 AT1G79180.2 43.411 258 96 8 3 220 5 252 1.58e-56 183
Msa0015800 AT5G65230.1 69.231 117 36 0 1 117 1 117 1.73e-56 182
Msa0015800 AT4G17785.2 66.949 118 38 1 1 117 1 118 3.14e-56 183
Msa0015800 AT5G62470.2 67.500 120 39 0 1 120 1 120 4.12e-56 182
Msa0015800 AT4G17785.1 66.949 118 38 1 1 117 1 118 4.30e-56 183
Msa0015800 AT3G28910.1 65.574 122 42 0 1 122 1 122 6.23e-56 181
Msa0015800 AT4G34990.1 68.376 117 37 0 1 117 1 117 3.31e-55 178
Msa0015800 AT1G18570.1 68.644 118 36 1 1 117 1 118 4.52e-55 180
Msa0015800 AT5G60890.1 66.379 116 39 0 1 116 1 116 5.18e-55 178
Msa0015800 AT5G62470.1 67.500 120 38 1 1 120 1 119 1.11e-54 179
Msa0015800 AT2G47460.1 66.949 118 39 0 1 118 1 118 1.24e-54 179
Msa0015800 AT3G47600.1 64.754 122 43 0 1 122 1 122 1.26e-54 178
Msa0015800 AT1G74650.1 67.521 117 38 0 1 117 1 117 3.04e-54 177
Msa0015800 AT4G12350.1 66.667 117 39 0 1 117 1 117 1.20e-53 174
Msa0015800 AT3G62610.1 67.241 116 38 0 1 116 1 116 1.27e-53 176
Msa0015800 AT5G16600.1 67.241 116 38 0 1 116 1 116 1.30e-53 176
Msa0015800 AT4G22680.1 51.852 162 72 2 1 158 1 160 1.73e-53 173
Msa0015800 AT1G08810.1 66.379 116 39 0 1 116 1 116 2.28e-53 173
Msa0015800 AT1G74080.1 64.103 117 42 0 1 117 1 117 6.12e-53 174
Msa0015800 AT5G54230.1 72.642 106 29 0 12 117 12 117 1.98e-52 172
Msa0015800 AT1G57560.1 52.980 151 71 0 1 151 1 151 2.25e-52 172
Msa0015800 AT1G57560.2 63.248 117 43 0 1 117 1 117 4.30e-52 170
Msa0015800 AT5G61420.2 64.103 117 42 0 1 117 1 117 5.85e-52 172
Msa0015800 AT5G07690.1 63.559 118 43 0 1 118 1 118 1.07e-51 171
Msa0015800 AT4G01680.3 64.655 116 41 0 1 116 1 116 2.66e-51 167
Msa0015800 AT5G56110.1 64.655 116 41 0 1 116 1 116 4.54e-51 169
Msa0015800 AT1G66230.1 64.655 116 41 0 1 116 1 116 5.66e-51 167
Msa0015800 AT4G01680.1 64.655 116 41 0 1 116 1 116 8.36e-51 169
Msa0015800 AT1G09540.1 48.795 166 81 1 1 162 1 166 8.66e-51 169
Msa0015800 AT5G26660.1 63.793 116 42 0 1 116 1 116 5.61e-50 167
Msa0015800 AT5G07700.1 61.864 118 45 0 1 118 1 118 1.40e-49 166
Msa0015800 AT5G07700.2 61.864 118 45 0 1 118 1 118 1.40e-49 166
Msa0015800 AT5G14340.1 62.931 116 43 0 1 116 13 128 3.20e-49 162
Msa0015800 AT4G37780.1 60.169 118 46 1 1 117 1 118 3.27e-49 164
Msa0015800 AT5G62320.1 52.817 142 57 2 3 137 4 142 8.70e-49 160
Msa0015800 AT3G13890.2 58.974 117 48 0 1 117 1 117 1.05e-48 164
Msa0015800 AT3G12720.1 57.143 126 48 1 6 125 16 141 7.34e-48 160
Msa0015800 AT1G74430.1 56.618 136 55 1 1 132 1 136 1.22e-47 159
Msa0015800 AT3G49690.1 61.345 119 45 1 1 118 1 119 2.39e-47 159
Msa0015800 AT5G57620.1 61.017 118 45 1 1 117 1 118 2.50e-47 159
Msa0015800 AT4G01680.2 58.594 128 41 1 1 116 1 128 2.85e-47 160
Msa0015800 AT5G35550.1 63.717 113 41 0 12 124 14 126 8.86e-47 156
Msa0015800 AT5G65790.1 60.504 119 46 1 1 118 1 119 2.02e-46 158
Msa0015800 AT5G23000.1 41.709 199 101 3 1 184 1 199 2.92e-46 157
Msa0015800 AT5G14750.1 61.538 104 40 0 13 116 17 120 3.05e-46 153
Msa0015800 AT1G18710.1 60.345 116 46 0 1 116 1 116 3.43e-46 155
Msa0015800 AT2G32460.1 62.963 108 40 0 8 115 14 121 4.22e-46 160
Msa0015800 AT3G13890.1 54.762 126 48 1 1 117 1 126 1.36e-45 156
Msa0015800 AT2G32460.2 63.208 106 39 0 10 115 4 109 1.46e-45 158
Msa0015800 AT5G40330.1 60.577 104 41 0 13 116 13 116 1.64e-45 151
Msa0015800 AT5G40350.1 42.632 190 97 6 12 194 17 201 1.79e-45 151
Msa0015800 AT2G36890.1 59.167 120 48 1 1 119 1 120 6.93e-45 152
Msa0015800 AT2G36890.2 59.167 120 48 1 1 119 42 161 1.13e-44 153
Msa0015800 AT1G63910.1 53.030 132 58 1 1 128 1 132 1.40e-44 153
Msa0015800 AT5G06100.1 60.952 105 41 0 11 115 31 135 2.08e-44 155
Msa0015800 AT3G28470.1 59.091 110 45 0 1 110 1 110 6.25e-44 150
Msa0015800 AT3G27920.1 56.364 110 48 0 8 117 10 119 6.35e-44 147
Msa0015800 AT5G06100.5 60.952 105 41 0 11 115 31 135 7.04e-44 154
Msa0015800 AT5G06100.2 60.952 105 41 0 11 115 31 135 7.04e-44 154
Msa0015800 AT5G06100.3 60.952 105 41 0 11 115 31 135 7.04e-44 154
Msa0015800 AT5G06100.4 60.952 105 41 0 11 115 31 135 7.04e-44 154
Msa0015800 AT3G30210.1 47.205 161 77 2 11 171 26 178 2.18e-43 147
Msa0015800 AT5G55020.1 61.905 105 40 0 12 116 26 130 3.39e-43 153
Msa0015800 AT5G12870.1 58.261 115 48 0 2 116 8 122 4.55e-43 147
Msa0015800 AT3G08500.1 62.037 108 41 0 9 116 27 134 5.64e-43 148
Msa0015800 AT3G11440.2 57.522 113 44 1 7 115 32 144 6.93e-43 151
Msa0015800 AT2G26960.1 59.434 106 43 0 9 114 17 122 1.37e-42 149
Msa0015800 AT3G01530.1 57.798 109 46 0 8 116 21 129 1.77e-42 143
Msa0015800 AT5G52600.1 55.932 118 52 0 9 126 9 126 1.88e-42 143
Msa0015800 AT3G27810.1 56.522 115 50 0 12 126 20 134 2.29e-42 144
Msa0015800 AT3G11440.3 57.522 113 44 1 7 115 32 144 2.33e-42 151
Msa0015800 AT3G11440.4 57.522 113 44 1 7 115 32 144 2.33e-42 151
Msa0015800 AT3G11440.1 57.522 113 44 1 7 115 32 144 2.33e-42 151
Msa0015800 AT4G13480.1 51.969 127 55 1 13 139 7 127 7.20e-42 143
Msa0015800 AT3G24310.1 53.175 126 57 1 9 134 15 138 1.65e-41 142
Msa0015800 AT4G26930.1 59.223 103 42 0 12 114 19 121 2.25e-41 145
Msa0015800 AT4G25560.1 60.360 111 44 0 13 123 11 121 3.16e-41 142
Msa0015800 AT2G47190.1 46.207 145 78 0 8 152 16 160 5.99e-41 141
Msa0015800 AT1G68320.1 47.586 145 76 0 12 156 19 163 4.24e-40 139
Msa0015800 AT1G25340.1 57.143 112 46 1 13 122 19 130 5.09e-40 139
Msa0015800 AT3G23250.2 41.518 224 83 8 58 233 1 224 7.91e-40 137
Msa0015800 AT5G52260.1 57.143 119 51 0 1 119 1 119 1.68e-39 137
Msa0015800 AT1G66370.1 54.717 106 48 0 10 115 6 111 7.73e-39 135
Msa0015800 AT1G48000.1 47.297 148 71 3 12 155 32 176 9.86e-39 135
Msa0015800 AT3G48920.1 55.660 106 47 0 9 114 15 120 2.44e-38 134
Msa0015800 AT3G46130.1 52.778 108 51 0 8 115 5 112 9.75e-37 130
Msa0015800 AT1G66380.1 52.419 124 52 2 10 132 6 123 1.19e-36 126
Msa0015800 AT5G59780.3 54.369 103 47 0 13 115 9 111 3.44e-36 128
Msa0015800 AT1G56650.1 56.604 106 46 0 10 115 6 111 7.25e-36 127
Msa0015800 AT1G25340.2 54.464 112 44 2 13 122 19 125 1.24e-35 127
Msa0015800 AT1G66390.1 56.604 106 46 0 10 115 6 111 1.71e-35 126
Msa0015800 AT5G49620.1 44.937 158 84 1 8 162 22 179 2.11e-35 128
Msa0015800 AT1G25340.3 54.464 112 44 2 13 122 19 125 2.13e-35 128
Msa0015800 AT3G53200.1 54.808 104 47 0 12 115 9 112 2.66e-35 125
Msa0015800 AT3G06490.1 59.223 103 42 0 12 114 19 121 3.42e-35 127
Msa0015800 AT3G12820.2 76.056 71 17 0 47 117 1 71 5.13e-35 124
Msa0015800 AT5G35550.2 66.279 86 29 0 39 124 44 129 3.92e-34 123
Msa0015800 AT5G14750.3 66.667 78 23 1 39 116 12 86 5.40e-34 120
Msa0015800 AT5G26660.2 72.222 72 20 0 45 116 14 85 1.84e-32 120
Msa0015800 AT5G49620.2 41.279 172 84 2 8 162 22 193 1.16e-31 118
Msa0015800 AT5G40350.2 40.764 157 81 6 45 194 5 156 3.28e-31 113
Msa0015800 AT3G60460.1 44.444 117 63 2 7 122 6 121 8.66e-31 115
Msa0015800 AT3G47600.2 67.532 77 25 0 45 121 39 115 1.52e-30 115
Msa0015800 AT2G26950.1 48.000 100 52 0 9 108 13 112 4.38e-30 115
Msa0015800 AT5G58850.1 32.127 221 119 6 10 224 101 296 8.50e-29 112
Msa0015800 AT3G27810.2 57.143 84 36 0 43 126 2 85 9.01e-29 107
Msa0015800 AT3G46130.3 62.500 72 27 0 44 115 9 80 1.59e-27 105
Msa0015800 AT3G09230.1 33.505 194 108 4 14 203 55 231 1.84e-27 108
Msa0015800 AT5G59780.2 63.380 71 26 0 45 115 20 90 3.11e-27 104
Msa0015800 AT2G23290.1 50.000 102 50 1 14 115 13 113 3.30e-27 106
Msa0015800 AT3G46130.4 63.380 71 26 0 45 115 20 90 3.67e-27 104
Msa0015800 AT3G09370.2 33.761 234 132 7 12 233 133 355 4.34e-27 108
Msa0015800 AT3G09370.1 33.761 234 132 7 12 233 128 350 4.35e-27 108
Msa0015800 AT3G09370.3 33.761 234 132 7 12 233 141 363 4.66e-27 108
Msa0015800 AT3G53200.2 63.380 71 26 0 45 115 9 79 4.89e-27 103
Msa0015800 AT4G37260.1 48.039 102 52 1 14 115 13 113 9.41e-27 105
Msa0015800 AT1G22640.3 72.131 61 17 0 58 118 1 61 1.11e-26 102
Msa0015800 AT3G55730.1 46.018 113 52 2 14 122 56 163 9.89e-26 103
Msa0015800 AT2G39880.1 48.113 106 46 2 14 115 50 150 1.45e-25 103
Msa0015800 AT5G11510.3 46.789 109 49 2 12 116 79 182 2.07e-25 104
Msa0015800 AT5G11510.3 36.000 100 62 2 14 112 29 127 6.03e-14 71.2
Msa0015800 AT5G11510.1 46.789 109 49 2 12 116 79 182 2.07e-25 104
Msa0015800 AT5G11510.1 36.000 100 62 2 14 112 29 127 6.03e-14 71.2
Msa0015800 AT5G11510.4 46.789 109 49 2 12 116 79 182 2.07e-25 104
Msa0015800 AT5G11510.4 36.000 100 62 2 14 112 29 127 6.03e-14 71.2
Msa0015800 AT5G11510.2 46.789 109 49 2 12 116 79 182 3.20e-25 103
Msa0015800 AT5G11510.2 36.000 100 62 2 14 112 29 127 6.73e-14 70.9
Msa0015800 AT5G11510.5 46.789 109 49 2 12 116 79 182 3.23e-25 103
Msa0015800 AT5G11510.5 36.000 100 62 2 14 112 29 127 6.67e-14 70.9
Msa0015800 AT3G50060.1 47.059 102 53 1 14 115 6 106 3.40e-25 100
Msa0015800 AT5G02320.1 43.697 119 63 2 12 127 125 242 3.49e-25 103
Msa0015800 AT5G02320.1 34.000 100 64 2 14 112 75 173 1.57e-12 67.0
Msa0015800 AT5G02320.2 43.697 119 63 2 12 127 125 242 3.49e-25 103
Msa0015800 AT5G02320.2 34.000 100 64 2 14 112 75 173 1.57e-12 67.0
Msa0015800 AT3G27785.1 35.758 165 100 3 8 169 183 344 3.73e-25 102
Msa0015800 AT5G02320.3 43.697 119 63 2 12 127 65 182 4.45e-25 103
Msa0015800 AT5G02320.3 34.000 100 64 2 14 112 15 113 2.04e-12 66.6
Msa0015800 AT1G17950.1 49.515 103 49 2 14 115 5 105 5.31e-25 99.4
Msa0015800 AT4G33450.1 42.478 113 59 2 3 115 13 119 6.27e-25 99.4
Msa0015800 AT5G40360.1 33.526 173 95 4 1 172 145 298 8.98e-25 100
Msa0015800 AT5G67300.1 47.059 102 53 1 14 115 6 106 1.63e-24 99.4
Msa0015800 AT4G18770.1 42.342 111 59 2 8 116 211 318 6.26e-24 99.4
Msa0015800 AT1G66380.3 61.111 72 28 0 44 115 7 78 6.98e-24 92.4
Msa0015800 AT5G14750.4 64.407 59 21 0 58 116 1 59 7.70e-24 93.6
Msa0015800 AT5G14750.2 64.407 59 21 0 58 116 1 59 7.70e-24 93.6
Msa0015800 AT4G32730.5 42.857 105 59 1 12 116 85 188 9.18e-24 99.8
Msa0015800 AT4G32730.5 35.000 100 63 2 14 112 35 133 5.95e-13 68.2
Msa0015800 AT4G32730.4 42.857 105 59 1 12 116 85 188 9.18e-24 99.8
Msa0015800 AT4G32730.4 35.000 100 63 2 14 112 35 133 5.95e-13 68.2
Msa0015800 AT4G32730.3 42.857 105 59 1 12 116 85 188 9.18e-24 99.8
Msa0015800 AT4G32730.3 35.000 100 63 2 14 112 35 133 5.95e-13 68.2
Msa0015800 AT4G32730.2 42.857 105 59 1 12 116 85 188 9.18e-24 99.8
Msa0015800 AT4G32730.2 35.000 100 63 2 14 112 35 133 5.95e-13 68.2
Msa0015800 AT4G32730.1 42.857 105 59 1 12 116 85 188 9.90e-24 99.8
Msa0015800 AT4G32730.1 35.000 100 63 2 14 112 35 133 6.08e-13 68.2
Msa0015800 AT1G69560.2 39.695 131 71 3 9 138 118 241 1.02e-23 97.8
Msa0015800 AT1G69560.1 39.695 131 71 3 9 138 102 225 1.09e-23 97.4
Msa0015800 AT1G66380.2 51.807 83 40 0 10 92 6 88 5.48e-23 90.1
Msa0015800 AT1G18960.1 44.828 116 57 4 1 116 1 109 6.88e-23 94.7
Msa0015800 AT1G71030.1 50.602 83 40 1 35 117 4 85 9.68e-23 92.0
Msa0015800 AT1G26780.1 45.714 105 54 2 12 115 96 198 1.28e-22 93.6
Msa0015800 AT1G73410.1 48.598 107 52 2 14 119 6 110 1.45e-22 92.8
Msa0015800 AT1G71030.2 56.716 67 29 0 51 117 5 71 1.49e-22 91.3
Msa0015800 AT5G11050.1 33.010 206 109 7 10 197 101 295 1.50e-22 95.5
Msa0015800 AT1G26780.2 45.714 105 54 2 12 115 96 198 1.78e-22 94.7
Msa0015800 AT1G73410.2 48.148 108 53 2 14 120 6 111 3.80e-22 90.9
Msa0015800 AT5G17800.1 43.137 102 57 1 14 115 93 193 1.11e-21 92.0
Msa0015800 AT3G29020.1 39.806 103 61 1 14 116 65 166 1.38e-21 90.1
Msa0015800 AT3G29020.2 39.806 103 61 1 14 116 67 168 3.12e-21 90.5
Msa0015800 AT5G39700.1 42.718 103 58 1 8 110 50 151 1.27e-19 83.6
Msa0015800 AT2G25230.1 39.823 113 64 3 7 118 19 128 4.01e-18 80.5
Msa0015800 AT4G00540.2 40.741 108 60 2 12 116 101 207 4.84e-18 82.4
Msa0015800 AT4G00540.2 31.579 114 70 3 14 119 46 159 1.23e-12 67.0
Msa0015800 AT4G00540.1 40.741 108 60 2 12 116 99 205 8.19e-18 82.0
Msa0015800 AT4G00540.1 31.579 114 70 3 14 119 44 157 1.78e-12 66.6
Msa0015800 AT2G37630.1 37.624 101 61 1 17 115 7 107 1.33e-17 81.3
Msa0015800 AT1G14350.2 37.069 116 72 1 17 132 28 142 5.12e-17 79.7
Msa0015800 AT1G14350.1 37.069 116 72 1 17 132 28 142 5.12e-17 79.7
Msa0015800 AT2G02820.3 40.404 99 58 1 17 115 33 130 1.58e-16 77.8
Msa0015800 AT2G02820.2 39.394 99 59 1 17 115 33 130 2.87e-16 77.8
Msa0015800 AT2G02820.1 39.394 99 59 1 17 115 33 130 3.24e-16 77.4
Msa0015800 AT4G25560.2 64.706 51 18 0 73 123 5 55 1.87e-15 73.2
Msa0015800 AT5G40430.1 34.821 112 70 3 7 118 47 155 1.50e-14 71.2
Msa0015800 AT1G16490.2 57.377 61 23 2 77 136 12 70 1.49e-13 67.8
Msa0015800 AT5G59780.1 58.696 46 19 0 70 115 1 46 7.58e-13 65.1
Msa0015800 AT3G46130.2 58.696 46 19 0 70 115 1 46 1.10e-12 65.1
Msa0015800 AT1G74650.3 67.500 40 13 0 78 117 2 41 8.93e-12 63.5
Msa0015800 AT3G28910.2 60.000 45 18 0 78 122 2 46 1.21e-11 63.2
Msa0015800 AT3G18100.1 34.375 96 62 1 13 108 545 639 2.97e-11 63.2
Msa0015800 AT3G18100.3 34.375 96 62 1 13 108 497 591 3.53e-11 63.2
Msa0015800 AT3G18100.4 34.375 96 62 1 13 108 384 478 3.56e-11 62.8
Msa0015800 AT3G18100.2 34.375 96 62 1 13 108 332 426 3.81e-11 62.8

Find 35 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAACTTGGTTGGTTATTAT+TGG 0.184906 1_1:+25912577 None:intergenic
CAAAAGCTTTCATCAATTTC+AGG 0.250594 1_1:+25912377 None:intergenic
TGATAAATACCTGCATGTTT+TGG 0.253588 1_1:+25913323 None:intergenic
ATTTCATTGTCTGTTCTTCC+AGG 0.291634 1_1:+25912644 None:intergenic
CTGAAATTGATGAAAGCTTT+TGG 0.299877 1_1:-25912376 Msa0015800:CDS
AAATTTCCTCTCTTAATATC+AGG 0.343705 1_1:+25913025 None:intergenic
GAGGATTTCATCTTCATCTA+AGG 0.382297 1_1:+25913391 None:intergenic
TCATTATCAAAAGGATTTGA+TGG 0.387834 1_1:+25912314 None:intergenic
AGCTTCCATTGAGTTGGAAT+TGG 0.389117 1_1:+25912502 None:intergenic
CATGAAAATGTTTAGAACTC+TGG 0.425811 1_1:+25912233 None:intergenic
TATAACGTGTTCATCAAATC+AGG 0.457240 1_1:-25912272 Msa0015800:CDS
TGCATGAGTTGCTAGGGAAC+AGG 0.464920 1_1:-25912970 Msa0015800:intron
ACAAACATGGACATAGCAAT+TGG 0.487178 1_1:-25913355 Msa0015800:CDS
ATTGTCACAAAAGAGTCTTC+AGG 0.488694 1_1:+25912401 None:intergenic
AAATGCCAATTCCAACTCAA+TGG 0.490366 1_1:-25912507 Msa0015800:CDS
ATGCAGGTTTATTGAGATGT+GGG 0.495585 1_1:-25913084 Msa0015800:intron
AAGGATTGAAGAAAGGTCCT+TGG 0.507800 1_1:-25913415 Msa0015800:CDS
ATTAAGATGCATGAGTTGCT+AGG 0.510133 1_1:-25912977 Msa0015800:CDS
TTGTCACAAAAGAGTCTTCA+GGG 0.515022 1_1:+25912402 None:intergenic
TGATGTAGCTTCCATTGAGT+TGG 0.515373 1_1:+25912496 None:intergenic
ATGCCATCGTCATTATCAAA+AGG 0.520441 1_1:+25912305 None:intergenic
ATGTCCATGTTTGTTGATGT+AGG 0.534085 1_1:+25913364 None:intergenic
GGAAGAGTTGTAGATTGAGA+TGG 0.538903 1_1:-25913063 Msa0015800:CDS
GCAATAGCAGCAAAATTACC+TGG 0.544673 1_1:-25912662 Msa0015800:CDS
TATGCAGGTTTATTGAGATG+TGG 0.549316 1_1:-25913085 Msa0015800:intron
CGTGCTCTCCCAAAACATGC+AGG 0.549725 1_1:-25913332 Msa0015800:intron
TTAAGACCTGATATTAAGAG+AGG 0.556179 1_1:-25913031 Msa0015800:CDS
GAAAAGAAAGGATTGAAGAA+AGG 0.556619 1_1:-25913422 Msa0015800:CDS
TTAAGATGCATGAGTTGCTA+GGG 0.559460 1_1:-25912976 Msa0015800:CDS
ATCAAAAGGATTTGATGGCA+TGG 0.559802 1_1:+25912319 None:intergenic
TCATCTTCATCTAAGGTCCA+AGG 0.561627 1_1:+25913398 None:intergenic
GCTCCATGTTGTGAAAAGAA+AGG 0.568642 1_1:-25913434 Msa0015800:CDS
GTTTGTTGATGTAGGATGTG+AGG 0.621655 1_1:+25913372 None:intergenic
ACATCCTACATCAACAAACA+TGG 0.633737 1_1:-25913368 Msa0015800:CDS
AAAAGGATTTGATGGCATGG+TGG 0.685069 1_1:+25912322 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATCAATATATAGTTTAT+TGG + chr1_1:25912833-25912852 None:intergenic 10.0%
!! AATATCAATATATAGTTTAT+TGG + chr1_1:25912833-25912852 None:intergenic 10.0%
!!! ATTTTAGTCAAAAACTCATT+CGG - chr1_1:25912424-25912443 Msa0015800:CDS 20.0%
!!! TGATATTTGGTAGATTTTAT+AGG - chr1_1:25912483-25912502 Msa0015800:CDS 20.0%
!!! GTGTATTGATTAATTAGTTT+TGG - chr1_1:25912565-25912584 Msa0015800:CDS 20.0%
!!! AAATTTTACAAATGAAGAAG+AGG - chr1_1:25912679-25912698 Msa0015800:intron 20.0%
!! ACAATGAAATAAAAAATGTG+TGG - chr1_1:25913056-25913075 Msa0015800:CDS 20.0%
!!! TTGTTTTGATACTCTTTTTT+TGG + chr1_1:25913140-25913159 None:intergenic 20.0%
!!! ATTTTAGTCAAAAACTCATT+CGG - chr1_1:25912424-25912443 Msa0015800:CDS 20.0%
!!! TGATATTTGGTAGATTTTAT+AGG - chr1_1:25912483-25912502 Msa0015800:CDS 20.0%
!!! GTGTATTGATTAATTAGTTT+TGG - chr1_1:25912565-25912584 Msa0015800:CDS 20.0%
!!! AAATTTTACAAATGAAGAAG+AGG - chr1_1:25912679-25912698 Msa0015800:intron 20.0%
!! ACAATGAAATAAAAAATGTG+TGG - chr1_1:25913056-25913075 Msa0015800:CDS 20.0%
!!! TTGTTTTGATACTCTTTTTT+TGG + chr1_1:25913140-25913159 None:intergenic 20.0%
! ACTCTGTTTGGTAAAAATAA+CGG + chr1_1:25912395-25912414 None:intergenic 25.0%
!!! TTGAGAGATATTCTACTTTT+AGG - chr1_1:25912517-25912536 Msa0015800:CDS 25.0%
!!! ATTCTACTTTTAGGATGATT+TGG - chr1_1:25912526-25912545 Msa0015800:CDS 25.0%
! AAATTTCCTCTCTTAATATC+AGG + chr1_1:25912665-25912684 None:intergenic 25.0%
! ACATGAAAATTACATGAGAA+TGG - chr1_1:25912858-25912877 Msa0015800:intron 25.0%
!!! TTCTGATTTTTGTTTTCAGA+TGG - chr1_1:25912999-25913018 Msa0015800:CDS 25.0%
!!! CTTTTTTTGGTATTTGAACT+TGG + chr1_1:25913127-25913146 None:intergenic 25.0%
!! TCTAGTAATTTTTCATCACA+AGG - chr1_1:25913229-25913248 Msa0015800:intron 25.0%
! TCATTATCAAAAGGATTTGA+TGG + chr1_1:25913376-25913395 None:intergenic 25.0%
! ACTCTGTTTGGTAAAAATAA+CGG + chr1_1:25912395-25912414 None:intergenic 25.0%
!!! TTGAGAGATATTCTACTTTT+AGG - chr1_1:25912517-25912536 Msa0015800:CDS 25.0%
!!! ATTCTACTTTTAGGATGATT+TGG - chr1_1:25912526-25912545 Msa0015800:CDS 25.0%
! AAATTTCCTCTCTTAATATC+AGG + chr1_1:25912665-25912684 None:intergenic 25.0%
! ACATGAAAATTACATGAGAA+TGG - chr1_1:25912858-25912877 Msa0015800:intron 25.0%
!!! TTCTGATTTTTGTTTTCAGA+TGG - chr1_1:25912999-25913018 Msa0015800:CDS 25.0%
!!! CTTTTTTTGGTATTTGAACT+TGG + chr1_1:25913127-25913146 None:intergenic 25.0%
!! TCTAGTAATTTTTCATCACA+AGG - chr1_1:25913229-25913248 Msa0015800:intron 25.0%
! TCATTATCAAAAGGATTTGA+TGG + chr1_1:25913376-25913395 None:intergenic 25.0%
! AATCCTTTCTTTTCACAACA+TGG + chr1_1:25912259-25912278 None:intergenic 30.0%
GAAAAGAAAGGATTGAAGAA+AGG - chr1_1:25912265-25912284 Msa0015800:CDS 30.0%
! GATAAATACCTGCATGTTTT+GGG + chr1_1:25912366-25912385 None:intergenic 30.0%
! TGATAAATACCTGCATGTTT+TGG + chr1_1:25912367-25912386 None:intergenic 30.0%
AATAACATCGAAACTCTGTT+TGG + chr1_1:25912407-25912426 None:intergenic 30.0%
! CTGGTTTAGTTTCTGATATT+TGG - chr1_1:25912470-25912489 Msa0015800:CDS 30.0%
TTAAGACCTGATATTAAGAG+AGG - chr1_1:25912656-25912675 Msa0015800:CDS 30.0%
!! GAACGACTTTGATTTGAAAA+AGG + chr1_1:25912762-25912781 None:intergenic 30.0%
GAAAATTACATGAGAATGGA+AGG - chr1_1:25912862-25912881 Msa0015800:intron 30.0%
! TGAACTTGGTTGGTTATTAT+TGG + chr1_1:25913113-25913132 None:intergenic 30.0%
! TTTTGGTATTTGAACTTGGT+TGG + chr1_1:25913123-25913142 None:intergenic 30.0%
CAAAAGCTTTCATCAATTTC+AGG + chr1_1:25913313-25913332 None:intergenic 30.0%
! CTGAAATTGATGAAAGCTTT+TGG - chr1_1:25913311-25913330 Msa0015800:intron 30.0%
!!! AATCCTTTTGATAATGACGA+TGG - chr1_1:25913379-25913398 Msa0015800:CDS 30.0%
TATAACGTGTTCATCAAATC+AGG - chr1_1:25913415-25913434 Msa0015800:CDS 30.0%
! AATCCTTTCTTTTCACAACA+TGG + chr1_1:25912259-25912278 None:intergenic 30.0%
GAAAAGAAAGGATTGAAGAA+AGG - chr1_1:25912265-25912284 Msa0015800:CDS 30.0%
! GATAAATACCTGCATGTTTT+GGG + chr1_1:25912366-25912385 None:intergenic 30.0%
! TGATAAATACCTGCATGTTT+TGG + chr1_1:25912367-25912386 None:intergenic 30.0%
AATAACATCGAAACTCTGTT+TGG + chr1_1:25912407-25912426 None:intergenic 30.0%
! CTGGTTTAGTTTCTGATATT+TGG - chr1_1:25912470-25912489 Msa0015800:CDS 30.0%
TTAAGACCTGATATTAAGAG+AGG - chr1_1:25912656-25912675 Msa0015800:CDS 30.0%
!! GAACGACTTTGATTTGAAAA+AGG + chr1_1:25912762-25912781 None:intergenic 30.0%
GAAAATTACATGAGAATGGA+AGG - chr1_1:25912862-25912881 Msa0015800:intron 30.0%
! TGAACTTGGTTGGTTATTAT+TGG + chr1_1:25913113-25913132 None:intergenic 30.0%
! TTTTGGTATTTGAACTTGGT+TGG + chr1_1:25913123-25913142 None:intergenic 30.0%
CAAAAGCTTTCATCAATTTC+AGG + chr1_1:25913313-25913332 None:intergenic 30.0%
! CTGAAATTGATGAAAGCTTT+TGG - chr1_1:25913311-25913330 Msa0015800:intron 30.0%
!!! AATCCTTTTGATAATGACGA+TGG - chr1_1:25913379-25913398 Msa0015800:CDS 30.0%
TATAACGTGTTCATCAAATC+AGG - chr1_1:25913415-25913434 Msa0015800:CDS 30.0%
GAGGATTTCATCTTCATCTA+AGG + chr1_1:25912299-25912318 None:intergenic 35.0%
ACATCCTACATCAACAAACA+TGG - chr1_1:25912319-25912338 Msa0015800:CDS 35.0%
! ATGTCCATGTTTGTTGATGT+AGG + chr1_1:25912326-25912345 None:intergenic 35.0%
ACAAACATGGACATAGCAAT+TGG - chr1_1:25912332-25912351 Msa0015800:CDS 35.0%
! AGAAACTAAACCAGCTTGTT+TGG + chr1_1:25912464-25912483 None:intergenic 35.0%
TATGCAGGTTTATTGAGATG+TGG - chr1_1:25912602-25912621 Msa0015800:CDS 35.0%
ATGCAGGTTTATTGAGATGT+GGG - chr1_1:25912603-25912622 Msa0015800:CDS 35.0%
ATTAAGATGCATGAGTTGCT+AGG - chr1_1:25912710-25912729 Msa0015800:intron 35.0%
TTAAGATGCATGAGTTGCTA+GGG - chr1_1:25912711-25912730 Msa0015800:intron 35.0%
! GAGATTCGAATTTTGCTTCT+TGG + chr1_1:25912970-25912989 None:intergenic 35.0%
ATTTCATTGTCTGTTCTTCC+AGG + chr1_1:25913046-25913065 None:intergenic 35.0%
AAATGCCAATTCCAACTCAA+TGG - chr1_1:25913180-25913199 Msa0015800:intron 35.0%
TTGTCACAAAAGAGTCTTCA+GGG + chr1_1:25913288-25913307 None:intergenic 35.0%
ATTGTCACAAAAGAGTCTTC+AGG + chr1_1:25913289-25913308 None:intergenic 35.0%
! ATCAAAAGGATTTGATGGCA+TGG + chr1_1:25913371-25913390 None:intergenic 35.0%
ATGCCATCGTCATTATCAAA+AGG + chr1_1:25913385-25913404 None:intergenic 35.0%
!!! TTTTGATAATGACGATGGCA+TGG - chr1_1:25913384-25913403 Msa0015800:CDS 35.0%
GAGGATTTCATCTTCATCTA+AGG + chr1_1:25912299-25912318 None:intergenic 35.0%
ACATCCTACATCAACAAACA+TGG - chr1_1:25912319-25912338 Msa0015800:CDS 35.0%
! ATGTCCATGTTTGTTGATGT+AGG + chr1_1:25912326-25912345 None:intergenic 35.0%
ACAAACATGGACATAGCAAT+TGG - chr1_1:25912332-25912351 Msa0015800:CDS 35.0%
! AGAAACTAAACCAGCTTGTT+TGG + chr1_1:25912464-25912483 None:intergenic 35.0%
TATGCAGGTTTATTGAGATG+TGG - chr1_1:25912602-25912621 Msa0015800:CDS 35.0%
ATGCAGGTTTATTGAGATGT+GGG - chr1_1:25912603-25912622 Msa0015800:CDS 35.0%
ATTAAGATGCATGAGTTGCT+AGG - chr1_1:25912710-25912729 Msa0015800:intron 35.0%
TTAAGATGCATGAGTTGCTA+GGG - chr1_1:25912711-25912730 Msa0015800:intron 35.0%
! GAGATTCGAATTTTGCTTCT+TGG + chr1_1:25912970-25912989 None:intergenic 35.0%
ATTTCATTGTCTGTTCTTCC+AGG + chr1_1:25913046-25913065 None:intergenic 35.0%
AAATGCCAATTCCAACTCAA+TGG - chr1_1:25913180-25913199 Msa0015800:intron 35.0%
TTGTCACAAAAGAGTCTTCA+GGG + chr1_1:25913288-25913307 None:intergenic 35.0%
ATTGTCACAAAAGAGTCTTC+AGG + chr1_1:25913289-25913308 None:intergenic 35.0%
! ATCAAAAGGATTTGATGGCA+TGG + chr1_1:25913371-25913390 None:intergenic 35.0%
ATGCCATCGTCATTATCAAA+AGG + chr1_1:25913385-25913404 None:intergenic 35.0%
!!! TTTTGATAATGACGATGGCA+TGG - chr1_1:25913384-25913403 Msa0015800:CDS 35.0%
GCTCCATGTTGTGAAAAGAA+AGG - chr1_1:25912253-25912272 Msa0015800:CDS 40.0%
AAGGATTGAAGAAAGGTCCT+TGG - chr1_1:25912272-25912291 Msa0015800:CDS 40.0%
! TCATCTTCATCTAAGGTCCA+AGG + chr1_1:25912292-25912311 None:intergenic 40.0%
! GTTTGTTGATGTAGGATGTG+AGG + chr1_1:25912318-25912337 None:intergenic 40.0%
GCTTCTCTTGTCAATTATGC+AGG - chr1_1:25912587-25912606 Msa0015800:CDS 40.0%
GGAAGAGTTGTAGATTGAGA+TGG - chr1_1:25912624-25912643 Msa0015800:CDS 40.0%
ATGAGAATGGAAGGTAATCG+AGG - chr1_1:25912871-25912890 Msa0015800:intron 40.0%
GCAATAGCAGCAAAATTACC+TGG - chr1_1:25913025-25913044 Msa0015800:CDS 40.0%
!! AGCTTCCATTGAGTTGGAAT+TGG + chr1_1:25913188-25913207 None:intergenic 40.0%
TGATGTAGCTTCCATTGAGT+TGG + chr1_1:25913194-25913213 None:intergenic 40.0%
! AAAAGGATTTGATGGCATGG+TGG + chr1_1:25913368-25913387 None:intergenic 40.0%
! ATGACGATGGCATGGATTTT+TGG - chr1_1:25913392-25913411 Msa0015800:CDS 40.0%
GCTCCATGTTGTGAAAAGAA+AGG - chr1_1:25912253-25912272 Msa0015800:CDS 40.0%
AAGGATTGAAGAAAGGTCCT+TGG - chr1_1:25912272-25912291 Msa0015800:CDS 40.0%
! TCATCTTCATCTAAGGTCCA+AGG + chr1_1:25912292-25912311 None:intergenic 40.0%
! GTTTGTTGATGTAGGATGTG+AGG + chr1_1:25912318-25912337 None:intergenic 40.0%
GCTTCTCTTGTCAATTATGC+AGG - chr1_1:25912587-25912606 Msa0015800:CDS 40.0%
GGAAGAGTTGTAGATTGAGA+TGG - chr1_1:25912624-25912643 Msa0015800:CDS 40.0%
ATGAGAATGGAAGGTAATCG+AGG - chr1_1:25912871-25912890 Msa0015800:intron 40.0%
GCAATAGCAGCAAAATTACC+TGG - chr1_1:25913025-25913044 Msa0015800:CDS 40.0%
!! AGCTTCCATTGAGTTGGAAT+TGG + chr1_1:25913188-25913207 None:intergenic 40.0%
TGATGTAGCTTCCATTGAGT+TGG + chr1_1:25913194-25913213 None:intergenic 40.0%
! AAAAGGATTTGATGGCATGG+TGG + chr1_1:25913368-25913387 None:intergenic 40.0%
! ATGACGATGGCATGGATTTT+TGG - chr1_1:25913392-25913411 Msa0015800:CDS 40.0%
TCTTCGCTAACCAAACAAGC+TGG - chr1_1:25912451-25912470 Msa0015800:CDS 45.0%
TCTTCGCTAACCAAACAAGC+TGG - chr1_1:25912451-25912470 Msa0015800:CDS 45.0%
TGCATGAGTTGCTAGGGAAC+AGG - chr1_1:25912717-25912736 Msa0015800:intron 50.0%
TGCATGAGTTGCTAGGGAAC+AGG - chr1_1:25912717-25912736 Msa0015800:intron 50.0%
CGTGCTCTCCCAAAACATGC+AGG - chr1_1:25912355-25912374 Msa0015800:CDS 55.0%
CGTGCTCTCCCAAAACATGC+AGG - chr1_1:25912355-25912374 Msa0015800:CDS 55.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 25912244 25913465 25912244 ID=Msa0015800;Name=Msa0015800
chr1_1 mRNA 25912244 25913465 25912244 ID=Msa0015800-mRNA-1;Parent=Msa0015800;Name=Msa0015800-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0|0|0|1|1|1|3|0|236
chr1_1 exon 25913333 25913465 25913333 ID=Msa0015800-mRNA-1:exon:8851;Parent=Msa0015800-mRNA-1
chr1_1 exon 25912971 25913100 25912971 ID=Msa0015800-mRNA-1:exon:8850;Parent=Msa0015800-mRNA-1
chr1_1 exon 25912244 25912691 25912244 ID=Msa0015800-mRNA-1:exon:8849;Parent=Msa0015800-mRNA-1
chr1_1 CDS 25913333 25913465 25913333 ID=Msa0015800-mRNA-1:cds;Parent=Msa0015800-mRNA-1
chr1_1 CDS 25912971 25913100 25912971 ID=Msa0015800-mRNA-1:cds;Parent=Msa0015800-mRNA-1
chr1_1 CDS 25912244 25912691 25912244 ID=Msa0015800-mRNA-1:cds;Parent=Msa0015800-mRNA-1
Gene Sequence

>Msa0015800

ATGGTTAGAGCTCCATGTTGTGAAAAGAAAGGATTGAAGAAAGGTCCTTGGACCTTAGATGAAGATGAAATCCTCACATCCTACATCAACAAACATGGACATAGCAATTGGCGTGCTCTCCCAAAACATGCAGGTTTATTGAGATGTGGGAAGAGTTGTAGATTGAGATGGATTAATTATTTAAGACCTGATATTAAGAGAGGAAATTTTACAAATGAAGAAGAGGAAACTATCATTAAGATGCATGAGTTGCTAGGGAACAGATGGTCAGCAATAGCAGCAAAATTACCTGGAAGAACAGACAATGAAATAAAAAATGTGTGGCACACTCACTTGAAGAAAAGATTGTTGAATACCAATAATAACCAACCAAGTTCAAATACCAAAAAAAGAGTATCAAAACAAAAAATCAAAAGATATGATTCAAATGCCAATTCCAACTCAATGGAAGCTACATCATCAAATTGCACTTTTTCTAGTAATTTTTCATCACAAGGAAGAAATGTTGACAACATCATCAATTGTGAAGACCCTGAAGACTCTTTTGTGACAATGCCTGAAATTGATGAAAGCTTTTGGTCAGAGAAAATAAATGATGACGAAATTAGCTCCACCATGCCATCAAATCCTTTTGATAATGACGATGGCATGGATTTTTGGTATAACGTGTTCATCAAATCAGGAGAATCAACAGAATTGCCAGAGTTCTAA
Protein sequence

>Msa0015800

MVRAPCCEKKGLKKGPWTLDEDEILTSYINKHGHSNWRALPKHAGLLRCGKSCRLRWINYLRPDIKRGNFTNEEEETIIKMHELLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKRLLNTNNNQPSSNTKKRVSKQKIKRYDSNANSNSMEATSSNCTFSSNFSSQGRNVDNIINCEDPEDSFVTMPEIDESFWSEKINDDEISSTMPSNPFDNDDGMDFWYNVFIKSGESTELPEF*