Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0015830 | ACJ85099.1 | 95.000 | 140 | 7 | 0 | 1 | 140 | 1 | 140 | 9.24e-88 | 270 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0015830 | sp|Q8LF80|CKB21_ARATH | 82.443 | 131 | 23 | 0 | 10 | 140 | 6 | 136 | 3.77e-72 | 223 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0015830 | B7FK14 | 95.000 | 140 | 7 | 0 | 1 | 140 | 1 | 140 | 4.41e-88 | 270 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0015830 | MtrunA17_Chr1g0187371 | 95.000 | 140 | 7 | 0 | 1 | 140 | 1 | 140 | 8.59e-92 | 270 |
| Msa0015830 | MtrunA17_Chr4g0002001 | 55.970 | 134 | 50 | 2 | 16 | 140 | 2 | 135 | 1.78e-41 | 141 |
| Msa0015830 | MtrunA17_Chr4g0051261 | 45.600 | 125 | 60 | 3 | 16 | 140 | 2 | 118 | 9.52e-30 | 110 |
| Msa0015830 | MtrunA17_Chr2g0293491 | 44.000 | 125 | 62 | 3 | 16 | 140 | 2 | 118 | 3.18e-28 | 107 |
| Msa0015830 | MtrunA17_Chr3g0093571 | 37.821 | 156 | 77 | 4 | 1 | 140 | 3 | 154 | 5.60e-20 | 86.7 |
| Msa0015830 | MtrunA17_Chr3g0093391 | 38.971 | 136 | 68 | 3 | 16 | 140 | 21 | 152 | 2.84e-19 | 84.7 |
| Msa0015830 | MtrunA17_Chr1g0201571 | 35.507 | 138 | 81 | 4 | 4 | 140 | 111 | 241 | 1.16e-17 | 80.1 |
| Msa0015830 | MtrunA17_Chr8g0358921 | 37.302 | 126 | 74 | 3 | 16 | 140 | 45 | 166 | 2.09e-17 | 78.6 |
| Msa0015830 | MtrunA17_Chr3g0099951 | 38.760 | 129 | 64 | 5 | 16 | 140 | 12 | 129 | 3.09e-16 | 75.5 |
| Msa0015830 | MtrunA17_Chr8g0385971 | 40.310 | 129 | 58 | 4 | 18 | 140 | 90 | 205 | 5.69e-16 | 75.1 |
| Msa0015830 | MtrunA17_Chr8g0383451 | 39.831 | 118 | 62 | 4 | 24 | 140 | 4 | 113 | 9.20e-16 | 74.3 |
| Msa0015830 | MtrunA17_Chr6g0483151 | 38.583 | 127 | 65 | 4 | 16 | 140 | 12 | 127 | 1.07e-15 | 73.9 |
| Msa0015830 | MtrunA17_Chr2g0317501 | 38.168 | 131 | 62 | 4 | 16 | 140 | 132 | 249 | 1.07e-15 | 74.3 |
| Msa0015830 | MtrunA17_Chr3g0130781 | 33.803 | 142 | 84 | 5 | 16 | 153 | 16 | 151 | 1.20e-15 | 73.9 |
| Msa0015830 | MtrunA17_Chr2g0286421 | 38.462 | 143 | 68 | 5 | 5 | 140 | 88 | 217 | 1.75e-15 | 73.6 |
| Msa0015830 | MtrunA17_Chr8g0377071 | 35.971 | 139 | 80 | 4 | 3 | 139 | 368 | 499 | 2.11e-15 | 73.6 |
| Msa0015830 | MtrunA17_Chr3g0122781 | 38.710 | 124 | 69 | 3 | 16 | 139 | 414 | 530 | 3.79e-15 | 72.8 |
| Msa0015830 | MtrunA17_Chr3g0131861 | 39.098 | 133 | 58 | 5 | 16 | 140 | 95 | 212 | 5.21e-15 | 72.4 |
| Msa0015830 | MtrunA17_Chr4g0061141 | 38.519 | 135 | 56 | 5 | 16 | 140 | 103 | 220 | 5.46e-15 | 72.4 |
| Msa0015830 | MtrunA17_Chr5g0396361 | 38.400 | 125 | 70 | 3 | 16 | 140 | 138 | 255 | 5.85e-15 | 72.0 |
| Msa0015830 | MtrunA17_Chr7g0218071 | 43.860 | 114 | 39 | 6 | 5 | 107 | 106 | 205 | 3.57e-14 | 70.1 |
| Msa0015830 | MtrunA17_Chr1g0191221 | 38.168 | 131 | 62 | 4 | 16 | 140 | 120 | 237 | 4.28e-14 | 69.7 |
| Msa0015830 | MtrunA17_Chr4g0057791 | 37.705 | 122 | 71 | 3 | 18 | 139 | 218 | 334 | 4.44e-14 | 69.7 |
| Msa0015830 | MtrunA17_Chr2g0324461 | 36.220 | 127 | 74 | 3 | 14 | 140 | 137 | 256 | 5.74e-14 | 69.3 |
| Msa0015830 | MtrunA17_Chr4g0040141 | 36.719 | 128 | 72 | 4 | 14 | 140 | 125 | 244 | 7.36e-14 | 68.9 |
| Msa0015830 | MtrunA17_Chr6g0453711 | 36.641 | 131 | 64 | 4 | 16 | 140 | 108 | 225 | 1.11e-13 | 68.6 |
| Msa0015830 | MtrunA17_Chr4g0066691 | 35.664 | 143 | 72 | 5 | 5 | 140 | 90 | 219 | 2.69e-13 | 67.4 |
| Msa0015830 | MtrunA17_Chr7g0273601 | 39.062 | 128 | 65 | 5 | 16 | 140 | 105 | 222 | 3.89e-13 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0015830 | AT1G76540.1 | 82.443 | 131 | 23 | 0 | 10 | 140 | 6 | 136 | 3.83e-73 | 223 |
| Msa0015830 | AT1G20930.1 | 82.308 | 130 | 23 | 0 | 11 | 140 | 9 | 138 | 5.65e-72 | 220 |
| Msa0015830 | AT3G54180.1 | 58.333 | 132 | 48 | 2 | 16 | 140 | 2 | 133 | 1.19e-40 | 140 |
| Msa0015830 | AT2G38620.3 | 55.556 | 135 | 49 | 4 | 16 | 140 | 2 | 135 | 1.00e-37 | 130 |
| Msa0015830 | AT2G38620.1 | 55.556 | 135 | 49 | 4 | 16 | 140 | 2 | 135 | 1.00e-37 | 130 |
| Msa0015830 | AT2G38620.2 | 55.556 | 135 | 49 | 4 | 16 | 140 | 2 | 135 | 6.64e-37 | 130 |
| Msa0015830 | AT3G48750.1 | 43.200 | 125 | 63 | 3 | 16 | 140 | 2 | 118 | 2.85e-28 | 107 |
| Msa0015830 | AT1G67580.1 | 38.710 | 124 | 69 | 3 | 16 | 139 | 404 | 520 | 5.47e-21 | 90.1 |
| Msa0015830 | AT1G67580.2 | 38.710 | 124 | 69 | 3 | 16 | 139 | 404 | 520 | 5.47e-21 | 90.1 |
| Msa0015830 | AT5G10270.1 | 40.441 | 136 | 66 | 3 | 16 | 140 | 24 | 155 | 4.01e-20 | 87.4 |
| Msa0015830 | AT5G64960.1 | 40.441 | 136 | 66 | 3 | 16 | 140 | 24 | 155 | 7.27e-20 | 86.7 |
| Msa0015830 | AT1G66750.1 | 45.378 | 119 | 52 | 4 | 24 | 140 | 19 | 126 | 9.09e-20 | 85.5 |
| Msa0015830 | AT1G71530.1 | 41.221 | 131 | 58 | 4 | 16 | 140 | 145 | 262 | 1.77e-18 | 82.8 |
| Msa0015830 | AT1G18040.1 | 41.322 | 121 | 62 | 4 | 20 | 140 | 14 | 125 | 4.02e-17 | 78.6 |
| Msa0015830 | AT1G71530.4 | 41.221 | 131 | 58 | 4 | 16 | 140 | 145 | 262 | 4.32e-17 | 78.2 |
| Msa0015830 | AT1G71530.3 | 40.559 | 143 | 65 | 5 | 5 | 140 | 133 | 262 | 5.38e-17 | 78.2 |
| Msa0015830 | AT1G71530.2 | 40.559 | 143 | 65 | 5 | 5 | 140 | 133 | 262 | 5.39e-17 | 78.2 |
| Msa0015830 | AT1G73690.1 | 38.843 | 121 | 65 | 4 | 20 | 140 | 13 | 124 | 5.55e-17 | 78.2 |
| Msa0015830 | AT1G18670.3 | 39.695 | 131 | 60 | 4 | 16 | 140 | 129 | 246 | 9.70e-17 | 77.8 |
| Msa0015830 | AT1G18670.1 | 39.695 | 131 | 60 | 4 | 16 | 140 | 129 | 246 | 9.76e-17 | 77.8 |
| Msa0015830 | AT1G18670.2 | 39.695 | 131 | 60 | 4 | 16 | 140 | 129 | 246 | 1.09e-16 | 77.8 |
| Msa0015830 | AT1G57700.1 | 39.098 | 133 | 62 | 4 | 14 | 140 | 142 | 261 | 1.60e-16 | 77.0 |
| Msa0015830 | AT1G09600.1 | 38.931 | 131 | 61 | 4 | 16 | 140 | 161 | 278 | 2.07e-15 | 73.9 |
| Msa0015830 | AT3G05050.3 | 37.241 | 145 | 67 | 6 | 5 | 140 | 124 | 253 | 2.48e-15 | 73.6 |
| Msa0015830 | AT3G05050.2 | 37.241 | 145 | 67 | 6 | 5 | 140 | 124 | 253 | 2.48e-15 | 73.6 |
| Msa0015830 | AT3G05050.1 | 37.241 | 145 | 67 | 6 | 5 | 140 | 124 | 253 | 2.48e-15 | 73.6 |
| Msa0015830 | AT4G10010.2 | 40.625 | 128 | 63 | 4 | 16 | 140 | 154 | 271 | 3.31e-15 | 73.2 |
| Msa0015830 | AT1G33770.1 | 39.844 | 128 | 64 | 4 | 16 | 140 | 139 | 256 | 5.07e-15 | 72.8 |
| Msa0015830 | AT1G03740.2 | 40.769 | 130 | 58 | 4 | 17 | 140 | 212 | 328 | 5.58e-15 | 72.8 |
| Msa0015830 | AT1G74330.1 | 39.695 | 131 | 60 | 4 | 16 | 140 | 119 | 236 | 6.20e-15 | 72.4 |
| Msa0015830 | AT1G03740.1 | 40.769 | 130 | 58 | 4 | 17 | 140 | 212 | 328 | 6.40e-15 | 72.4 |
| Msa0015830 | AT1G74330.3 | 39.844 | 128 | 64 | 4 | 16 | 140 | 119 | 236 | 6.40e-15 | 72.4 |
| Msa0015830 | AT1G74330.2 | 39.695 | 131 | 60 | 4 | 16 | 140 | 119 | 236 | 6.81e-15 | 72.4 |
| Msa0015830 | AT5G50860.2 | 39.516 | 124 | 66 | 4 | 18 | 140 | 114 | 229 | 1.50e-14 | 71.2 |
| Msa0015830 | AT5G50860.1 | 39.516 | 124 | 66 | 4 | 18 | 140 | 114 | 229 | 2.04e-14 | 70.9 |
| Msa0015830 | AT5G39420.1 | 39.683 | 126 | 67 | 4 | 16 | 140 | 103 | 220 | 2.35e-14 | 70.9 |
| Msa0015830 | AT5G44290.7 | 39.535 | 129 | 59 | 4 | 18 | 140 | 137 | 252 | 2.38e-14 | 70.9 |
| Msa0015830 | AT5G44290.6 | 39.231 | 130 | 60 | 4 | 17 | 140 | 136 | 252 | 2.42e-14 | 70.9 |
| Msa0015830 | AT1G54610.1 | 37.778 | 135 | 57 | 5 | 16 | 140 | 116 | 233 | 2.63e-14 | 70.9 |
| Msa0015830 | AT1G54610.3 | 37.778 | 135 | 57 | 5 | 16 | 140 | 116 | 233 | 2.63e-14 | 70.9 |
| Msa0015830 | AT1G54610.2 | 37.778 | 135 | 57 | 5 | 16 | 140 | 116 | 233 | 2.63e-14 | 70.9 |
| Msa0015830 | AT3G01085.1 | 36.800 | 125 | 72 | 3 | 16 | 140 | 113 | 230 | 3.95e-14 | 70.1 |
| Msa0015830 | AT3G01085.2 | 36.800 | 125 | 72 | 3 | 16 | 140 | 113 | 230 | 3.95e-14 | 70.1 |
| Msa0015830 | AT3G01085.3 | 36.800 | 125 | 72 | 3 | 16 | 140 | 113 | 230 | 3.95e-14 | 70.1 |
| Msa0015830 | AT5G44290.2 | 39.535 | 129 | 59 | 4 | 18 | 140 | 137 | 252 | 4.33e-14 | 70.1 |
| Msa0015830 | AT5G44290.5 | 39.535 | 129 | 59 | 4 | 18 | 140 | 137 | 252 | 4.33e-14 | 70.1 |
| Msa0015830 | AT5G44290.4 | 39.535 | 129 | 59 | 4 | 18 | 140 | 137 | 252 | 4.33e-14 | 70.1 |
| Msa0015830 | AT5G44290.1 | 39.535 | 129 | 59 | 4 | 18 | 140 | 137 | 252 | 4.33e-14 | 70.1 |
| Msa0015830 | AT5G44290.3 | 39.535 | 129 | 59 | 4 | 18 | 140 | 137 | 252 | 4.33e-14 | 70.1 |
| Msa0015830 | AT5G63370.9 | 32.903 | 155 | 91 | 6 | 4 | 153 | 148 | 294 | 7.25e-14 | 69.3 |
| Msa0015830 | AT1G53050.2 | 42.857 | 98 | 40 | 3 | 16 | 107 | 132 | 219 | 7.87e-14 | 69.3 |
| Msa0015830 | AT1G53050.1 | 42.857 | 98 | 40 | 3 | 16 | 107 | 132 | 219 | 7.87e-14 | 69.3 |
| Msa0015830 | AT5G63370.2 | 32.903 | 155 | 91 | 6 | 4 | 153 | 148 | 294 | 8.20e-14 | 69.3 |
| Msa0015830 | AT5G63370.3 | 32.903 | 155 | 91 | 6 | 4 | 153 | 148 | 294 | 8.20e-14 | 69.3 |
| Msa0015830 | AT5G63610.1 | 33.571 | 140 | 85 | 5 | 16 | 153 | 23 | 156 | 8.55e-14 | 68.9 |
| Msa0015830 | AT5G63370.5 | 32.903 | 155 | 91 | 6 | 4 | 153 | 282 | 428 | 1.77e-13 | 68.2 |
| Msa0015830 | AT5G63370.10 | 32.903 | 155 | 91 | 6 | 4 | 153 | 282 | 428 | 1.77e-13 | 68.2 |
| Msa0015830 | AT5G63370.7 | 32.903 | 155 | 91 | 6 | 4 | 153 | 282 | 428 | 2.01e-13 | 68.2 |
| Msa0015830 | AT5G63370.8 | 32.903 | 155 | 91 | 6 | 4 | 153 | 282 | 428 | 2.01e-13 | 68.2 |
| Msa0015830 | AT5G63370.4 | 32.903 | 155 | 91 | 6 | 4 | 153 | 282 | 428 | 2.01e-13 | 68.2 |
| Msa0015830 | AT5G63370.6 | 32.903 | 155 | 91 | 6 | 4 | 153 | 282 | 428 | 2.01e-13 | 68.2 |
| Msa0015830 | AT5G63370.1 | 32.903 | 155 | 91 | 6 | 4 | 153 | 282 | 428 | 2.01e-13 | 68.2 |
| Msa0015830 | AT4G22940.1 | 32.919 | 161 | 100 | 5 | 5 | 164 | 89 | 242 | 2.64e-12 | 64.7 |
| Msa0015830 | AT2G38620.4 | 75.610 | 41 | 10 | 0 | 16 | 56 | 2 | 42 | 3.49e-12 | 63.5 |
| Msa0015830 | AT4G22940.2 | 32.919 | 161 | 100 | 5 | 5 | 164 | 89 | 242 | 5.03e-12 | 63.9 |
Find 39 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTGTTATTTCTGGAATTT+TGG | 0.114984 | 1_1:-25971948 | Msa0015830:CDS |
| AATGGTGATTCTGTTATTTC+TGG | 0.119534 | 1_1:-25971956 | Msa0015830:CDS |
| TGGATTTGAAATATTATTTA+TGG | 0.130336 | 1_1:-25971982 | Msa0015830:CDS |
| AAATATTATTTATGGTTTAA+TGG | 0.188145 | 1_1:-25971974 | Msa0015830:CDS |
| AGGGAAAATTGTGTTGTATT+TGG | 0.236147 | 1_1:-25972255 | Msa0015830:CDS |
| TTGTGTTGTTCTTGGTAAAA+TGG | 0.258914 | 1_1:-25971904 | Msa0015830:CDS |
| AAGAAATTAACATACTTTGA+TGG | 0.359794 | 1_1:+25972154 | None:intergenic |
| CACTATTGCGATTGTTTCAC+CGG | 0.390130 | 1_1:+25972605 | None:intergenic |
| ATTAACATACTTTGATGGTT+GGG | 0.393821 | 1_1:+25972159 | None:intergenic |
| AACAATCGCAATAGTGTTAT+CGG | 0.396249 | 1_1:-25972598 | Msa0015830:CDS |
| TCTGTGGTTGCTTTCTGCCA+TGG | 0.421970 | 1_1:-25972015 | Msa0015830:CDS |
| CTCATGATCCACATGTTGTT+AGG | 0.436119 | 1_1:-25972398 | Msa0015830:intron |
| AATTAACATACTTTGATGGT+TGG | 0.452118 | 1_1:+25972158 | None:intergenic |
| TTGGTTCATAGTGTTCTTCA+AGG | 0.457308 | 1_1:-25971929 | Msa0015830:CDS |
| TTAACATACTTTGATGGTTG+GGG | 0.473395 | 1_1:+25972160 | None:intergenic |
| AGAGCAAGAGAGAAAGCTAC+TGG | 0.475204 | 1_1:-25972516 | Msa0015830:CDS |
| TGCAAGGGTGTTGCTTTCTG+TGG | 0.485498 | 1_1:-25972031 | Msa0015830:CDS |
| TTCGAGAAGCTCGAGAAAGT+TGG | 0.501777 | 1_1:-25972564 | Msa0015830:CDS |
| ACCACGCGAAGCGTAGTATG+AGG | 0.503755 | 1_1:+25972441 | None:intergenic |
| TTTGATGTATCAACTTTGCA+AGG | 0.507138 | 1_1:-25972047 | Msa0015830:CDS |
| CTGATCTTAAGAAATTCATT+CGG | 0.515537 | 1_1:-25972214 | Msa0015830:CDS |
| AAAGTTGGAGGAGGAACGTA+CGG | 0.523551 | 1_1:-25972549 | Msa0015830:CDS |
| CGCAATAGTGTTATCGGCGA+AGG | 0.529473 | 1_1:-25972592 | Msa0015830:CDS |
| AAACAAGGACAGAACAAGGA+AGG | 0.541059 | 1_1:-25972275 | Msa0015830:CDS |
| TCCTCATACTACGCTTCGCG+TGG | 0.549544 | 1_1:-25972442 | Msa0015830:CDS |
| GAGAAGCTCGAGAAAGTTGG+AGG | 0.563232 | 1_1:-25972561 | Msa0015830:CDS |
| CGTCTTCATGAAGATGATGA+AGG | 0.573237 | 1_1:-25972468 | Msa0015830:CDS |
| AGGTTGTTGGATGCGAAACA+AGG | 0.583469 | 1_1:-25972290 | Msa0015830:CDS |
| AACAAGGACAGAACAAGGAA+GGG | 0.594785 | 1_1:-25972274 | Msa0015830:CDS |
| AAGCTCGAGAAAGTTGGAGG+AGG | 0.601692 | 1_1:-25972558 | Msa0015830:CDS |
| TTGATGTATCAACTTTGCAA+GGG | 0.602717 | 1_1:-25972046 | Msa0015830:CDS |
| TTAACTTACCTAACAACATG+TGG | 0.608876 | 1_1:+25972390 | None:intergenic |
| TAACATACTTTGATGGTTGG+GGG | 0.617575 | 1_1:+25972161 | None:intergenic |
| TGCGAAACAAGGACAGAACA+AGG | 0.617839 | 1_1:-25972279 | Msa0015830:CDS |
| GAGCAAGAGAGAAAGCTACT+GGG | 0.629277 | 1_1:-25972515 | Msa0015830:CDS |
| AAGTTGGAGGAGGAACGTAC+GGG | 0.630808 | 1_1:-25972548 | Msa0015830:CDS |
| TGGAGGAGGAACGTACGGGA+AGG | 0.646655 | 1_1:-25972544 | Msa0015830:CDS |
| GATTCAATCATGGAGAAACC+CGG | 0.652544 | 1_1:-25972624 | None:intergenic |
| ACTATTGCGATTGTTTCACC+GGG | 0.655458 | 1_1:+25972606 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATTATTTATGGTTTAA+TGG | - | chr1_1:25972530-25972549 | Msa0015830:CDS | 10.0% |
| !! | AAATATTATTTATGGTTTAA+TGG | - | chr1_1:25972530-25972549 | Msa0015830:CDS | 10.0% |
| !! | TTGAAATTGAAAACAATTTA+GGG | + | chr1_1:25972140-25972159 | None:intergenic | 15.0% |
| !! | ATTGAAATTGAAAACAATTT+AGG | + | chr1_1:25972141-25972160 | None:intergenic | 15.0% |
| !! | AATTTCAATTCAATTTCAAT+TGG | - | chr1_1:25972152-25972171 | Msa0015830:intron | 15.0% |
| !!! | TGGATTTGAAATATTATTTA+TGG | - | chr1_1:25972522-25972541 | Msa0015830:CDS | 15.0% |
| !! | TTGAAATTGAAAACAATTTA+GGG | + | chr1_1:25972140-25972159 | None:intergenic | 15.0% |
| !! | ATTGAAATTGAAAACAATTT+AGG | + | chr1_1:25972141-25972160 | None:intergenic | 15.0% |
| !! | AATTTCAATTCAATTTCAAT+TGG | - | chr1_1:25972152-25972171 | Msa0015830:intron | 15.0% |
| !!! | TGGATTTGAAATATTATTTA+TGG | - | chr1_1:25972522-25972541 | Msa0015830:CDS | 15.0% |
| !!! | TTTCAATTGGATTTGAAATT+AGG | - | chr1_1:25972165-25972184 | Msa0015830:intron | 20.0% |
| !! | AAGAAATTAACATACTTTGA+TGG | + | chr1_1:25972353-25972372 | None:intergenic | 20.0% |
| !!! | ATTTTATGGGTTTGATTTTA+GGG | - | chr1_1:25972434-25972453 | Msa0015830:CDS | 20.0% |
| !!! | TTTCAATTGGATTTGAAATT+AGG | - | chr1_1:25972165-25972184 | Msa0015830:intron | 20.0% |
| !! | AAGAAATTAACATACTTTGA+TGG | + | chr1_1:25972353-25972372 | None:intergenic | 20.0% |
| !!! | ATTTTATGGGTTTGATTTTA+GGG | - | chr1_1:25972434-25972453 | Msa0015830:CDS | 20.0% |
| !!! | GTTGATTTTGTGAATTTTGT+TGG | - | chr1_1:25972187-25972206 | Msa0015830:CDS | 25.0% |
| !!! | GTATTTGGTTTTTGAGTATA+TGG | - | chr1_1:25972264-25972283 | Msa0015830:CDS | 25.0% |
| ! | CTGATCTTAAGAAATTCATT+CGG | - | chr1_1:25972290-25972309 | Msa0015830:CDS | 25.0% |
| !! | ATTAACATACTTTGATGGTT+GGG | + | chr1_1:25972348-25972367 | None:intergenic | 25.0% |
| !! | AATTAACATACTTTGATGGT+TGG | + | chr1_1:25972349-25972368 | None:intergenic | 25.0% |
| !!! | GATTTTATGGGTTTGATTTT+AGG | - | chr1_1:25972433-25972452 | Msa0015830:CDS | 25.0% |
| !!! | AAATCCATTTTTTCAAACCA+TGG | + | chr1_1:25972509-25972528 | None:intergenic | 25.0% |
| !!! | TTCTGTTATTTCTGGAATTT+TGG | - | chr1_1:25972556-25972575 | Msa0015830:CDS | 25.0% |
| !!! | GTTGATTTTGTGAATTTTGT+TGG | - | chr1_1:25972187-25972206 | Msa0015830:CDS | 25.0% |
| !!! | GTATTTGGTTTTTGAGTATA+TGG | - | chr1_1:25972264-25972283 | Msa0015830:CDS | 25.0% |
| ! | CTGATCTTAAGAAATTCATT+CGG | - | chr1_1:25972290-25972309 | Msa0015830:CDS | 25.0% |
| !! | ATTAACATACTTTGATGGTT+GGG | + | chr1_1:25972348-25972367 | None:intergenic | 25.0% |
| !! | AATTAACATACTTTGATGGT+TGG | + | chr1_1:25972349-25972368 | None:intergenic | 25.0% |
| !!! | GATTTTATGGGTTTGATTTT+AGG | - | chr1_1:25972433-25972452 | Msa0015830:CDS | 25.0% |
| !!! | AAATCCATTTTTTCAAACCA+TGG | + | chr1_1:25972509-25972528 | None:intergenic | 25.0% |
| !!! | TTCTGTTATTTCTGGAATTT+TGG | - | chr1_1:25972556-25972575 | Msa0015830:CDS | 25.0% |
| AACAATCGCAATAGTGTTAT+CGG | - | chr1_1:25971906-25971925 | Msa0015830:CDS | 30.0% | |
| TTAACTTACCTAACAACATG+TGG | + | chr1_1:25972117-25972136 | None:intergenic | 30.0% | |
| !! | TTGTGAATTTTGTTGGTGTT+AGG | - | chr1_1:25972194-25972213 | Msa0015830:CDS | 30.0% |
| AGGGAAAATTGTGTTGTATT+TGG | - | chr1_1:25972249-25972268 | Msa0015830:CDS | 30.0% | |
| ! | TTAACATACTTTGATGGTTG+GGG | + | chr1_1:25972347-25972366 | None:intergenic | 30.0% |
| TTTGATGTATCAACTTTGCA+AGG | - | chr1_1:25972457-25972476 | Msa0015830:CDS | 30.0% | |
| TTGATGTATCAACTTTGCAA+GGG | - | chr1_1:25972458-25972477 | Msa0015830:CDS | 30.0% | |
| !! | AATGGTGATTCTGTTATTTC+TGG | - | chr1_1:25972548-25972567 | Msa0015830:CDS | 30.0% |
| ! | TTGTGTTGTTCTTGGTAAAA+TGG | - | chr1_1:25972600-25972619 | Msa0015830:CDS | 30.0% |
| AACAATCGCAATAGTGTTAT+CGG | - | chr1_1:25971906-25971925 | Msa0015830:CDS | 30.0% | |
| TTAACTTACCTAACAACATG+TGG | + | chr1_1:25972117-25972136 | None:intergenic | 30.0% | |
| !! | TTGTGAATTTTGTTGGTGTT+AGG | - | chr1_1:25972194-25972213 | Msa0015830:CDS | 30.0% |
| AGGGAAAATTGTGTTGTATT+TGG | - | chr1_1:25972249-25972268 | Msa0015830:CDS | 30.0% | |
| ! | TTAACATACTTTGATGGTTG+GGG | + | chr1_1:25972347-25972366 | None:intergenic | 30.0% |
| TTTGATGTATCAACTTTGCA+AGG | - | chr1_1:25972457-25972476 | Msa0015830:CDS | 30.0% | |
| TTGATGTATCAACTTTGCAA+GGG | - | chr1_1:25972458-25972477 | Msa0015830:CDS | 30.0% | |
| !! | AATGGTGATTCTGTTATTTC+TGG | - | chr1_1:25972548-25972567 | Msa0015830:CDS | 30.0% |
| ! | TTGTGTTGTTCTTGGTAAAA+TGG | - | chr1_1:25972600-25972619 | Msa0015830:CDS | 30.0% |
| !!! | TTTTGTTGGTGTTAGGTTGT+TGG | - | chr1_1:25972201-25972220 | Msa0015830:CDS | 35.0% |
| ! | TAACATACTTTGATGGTTGG+GGG | + | chr1_1:25972346-25972365 | None:intergenic | 35.0% |
| TCTGCCATGGTTTGAAAAAA+TGG | - | chr1_1:25972502-25972521 | Msa0015830:CDS | 35.0% | |
| TTGGTTCATAGTGTTCTTCA+AGG | - | chr1_1:25972575-25972594 | Msa0015830:CDS | 35.0% | |
| !! | TCAAGGTTTTGTGTTGTTCT+TGG | - | chr1_1:25972592-25972611 | Msa0015830:CDS | 35.0% |
| !!! | TTTTGTTGGTGTTAGGTTGT+TGG | - | chr1_1:25972201-25972220 | Msa0015830:CDS | 35.0% |
| ! | TAACATACTTTGATGGTTGG+GGG | + | chr1_1:25972346-25972365 | None:intergenic | 35.0% |
| TCTGCCATGGTTTGAAAAAA+TGG | - | chr1_1:25972502-25972521 | Msa0015830:CDS | 35.0% | |
| TTGGTTCATAGTGTTCTTCA+AGG | - | chr1_1:25972575-25972594 | Msa0015830:CDS | 35.0% | |
| !! | TCAAGGTTTTGTGTTGTTCT+TGG | - | chr1_1:25972592-25972611 | Msa0015830:CDS | 35.0% |
| ACTATTGCGATTGTTTCACC+GGG | + | chr1_1:25971901-25971920 | None:intergenic | 40.0% | |
| CACTATTGCGATTGTTTCAC+CGG | + | chr1_1:25971902-25971921 | None:intergenic | 40.0% | |
| CGTCTTCATGAAGATGATGA+AGG | - | chr1_1:25972036-25972055 | Msa0015830:CDS | 40.0% | |
| CTCATGATCCACATGTTGTT+AGG | - | chr1_1:25972106-25972125 | Msa0015830:intron | 40.0% | |
| AAACAAGGACAGAACAAGGA+AGG | - | chr1_1:25972229-25972248 | Msa0015830:CDS | 40.0% | |
| AACAAGGACAGAACAAGGAA+GGG | - | chr1_1:25972230-25972249 | Msa0015830:CDS | 40.0% | |
| ! | ATTCGGAGTTTTCGTCAAAC+TGG | - | chr1_1:25972307-25972326 | Msa0015830:intron | 40.0% |
| ! | TTCGGAGTTTTCGTCAAACT+GGG | - | chr1_1:25972308-25972327 | Msa0015830:intron | 40.0% |
| ACTATTGCGATTGTTTCACC+GGG | + | chr1_1:25971901-25971920 | None:intergenic | 40.0% | |
| CACTATTGCGATTGTTTCAC+CGG | + | chr1_1:25971902-25971921 | None:intergenic | 40.0% | |
| CGTCTTCATGAAGATGATGA+AGG | - | chr1_1:25972036-25972055 | Msa0015830:CDS | 40.0% | |
| CTCATGATCCACATGTTGTT+AGG | - | chr1_1:25972106-25972125 | Msa0015830:intron | 40.0% | |
| AAACAAGGACAGAACAAGGA+AGG | - | chr1_1:25972229-25972248 | Msa0015830:CDS | 40.0% | |
| AACAAGGACAGAACAAGGAA+GGG | - | chr1_1:25972230-25972249 | Msa0015830:CDS | 40.0% | |
| ! | ATTCGGAGTTTTCGTCAAAC+TGG | - | chr1_1:25972307-25972326 | Msa0015830:intron | 40.0% |
| ! | TTCGGAGTTTTCGTCAAACT+GGG | - | chr1_1:25972308-25972327 | Msa0015830:intron | 40.0% |
| TTCGAGAAGCTCGAGAAAGT+TGG | - | chr1_1:25971940-25971959 | Msa0015830:CDS | 45.0% | |
| AAAGTTGGAGGAGGAACGTA+CGG | - | chr1_1:25971955-25971974 | Msa0015830:CDS | 45.0% | |
| AGAGCAAGAGAGAAAGCTAC+TGG | - | chr1_1:25971988-25972007 | Msa0015830:CDS | 45.0% | |
| GAGCAAGAGAGAAAGCTACT+GGG | - | chr1_1:25971989-25972008 | Msa0015830:CDS | 45.0% | |
| AGGTTGTTGGATGCGAAACA+AGG | - | chr1_1:25972214-25972233 | Msa0015830:CDS | 45.0% | |
| TGCGAAACAAGGACAGAACA+AGG | - | chr1_1:25972225-25972244 | Msa0015830:CDS | 45.0% | |
| TTCGAGAAGCTCGAGAAAGT+TGG | - | chr1_1:25971940-25971959 | Msa0015830:CDS | 45.0% | |
| AAAGTTGGAGGAGGAACGTA+CGG | - | chr1_1:25971955-25971974 | Msa0015830:CDS | 45.0% | |
| AGAGCAAGAGAGAAAGCTAC+TGG | - | chr1_1:25971988-25972007 | Msa0015830:CDS | 45.0% | |
| GAGCAAGAGAGAAAGCTACT+GGG | - | chr1_1:25971989-25972008 | Msa0015830:CDS | 45.0% | |
| AGGTTGTTGGATGCGAAACA+AGG | - | chr1_1:25972214-25972233 | Msa0015830:CDS | 45.0% | |
| TGCGAAACAAGGACAGAACA+AGG | - | chr1_1:25972225-25972244 | Msa0015830:CDS | 45.0% | |
| !!! | TTAATTAATTAATGATTTTA+TGG | - | chr1_1:25972420-25972439 | Msa0015830:CDS | 5.0% |
| !!! | TAATTAATTAATGATTTTAT+GGG | - | chr1_1:25972421-25972440 | Msa0015830:CDS | 5.0% |
| !!! | TTAATTAATTAATGATTTTA+TGG | - | chr1_1:25972420-25972439 | Msa0015830:CDS | 5.0% |
| !!! | TAATTAATTAATGATTTTAT+GGG | - | chr1_1:25972421-25972440 | Msa0015830:CDS | 5.0% |
| CGCAATAGTGTTATCGGCGA+AGG | - | chr1_1:25971912-25971931 | Msa0015830:CDS | 50.0% | |
| GAGAAGCTCGAGAAAGTTGG+AGG | - | chr1_1:25971943-25971962 | Msa0015830:CDS | 50.0% | |
| AAGCTCGAGAAAGTTGGAGG+AGG | - | chr1_1:25971946-25971965 | Msa0015830:CDS | 50.0% | |
| AAGTTGGAGGAGGAACGTAC+GGG | - | chr1_1:25971956-25971975 | Msa0015830:CDS | 50.0% | |
| ! | CATACTTTGATGGTTGGGGG+TGG | + | chr1_1:25972343-25972362 | None:intergenic | 50.0% |
| !! | TGCAAGGGTGTTGCTTTCTG+TGG | - | chr1_1:25972473-25972492 | Msa0015830:CDS | 50.0% |
| ! | TCTGTGGTTGCTTTCTGCCA+TGG | - | chr1_1:25972489-25972508 | Msa0015830:CDS | 50.0% |
| CGCAATAGTGTTATCGGCGA+AGG | - | chr1_1:25971912-25971931 | Msa0015830:CDS | 50.0% | |
| GAGAAGCTCGAGAAAGTTGG+AGG | - | chr1_1:25971943-25971962 | Msa0015830:CDS | 50.0% | |
| AAGCTCGAGAAAGTTGGAGG+AGG | - | chr1_1:25971946-25971965 | Msa0015830:CDS | 50.0% | |
| AAGTTGGAGGAGGAACGTAC+GGG | - | chr1_1:25971956-25971975 | Msa0015830:CDS | 50.0% | |
| ! | CATACTTTGATGGTTGGGGG+TGG | + | chr1_1:25972343-25972362 | None:intergenic | 50.0% |
| !! | TGCAAGGGTGTTGCTTTCTG+TGG | - | chr1_1:25972473-25972492 | Msa0015830:CDS | 50.0% |
| ! | TCTGTGGTTGCTTTCTGCCA+TGG | - | chr1_1:25972489-25972508 | Msa0015830:CDS | 50.0% |
| TCCTCATACTACGCTTCGCG+TGG | - | chr1_1:25972062-25972081 | Msa0015830:intron | 55.0% | |
| ACCACGCGAAGCGTAGTATG+AGG | + | chr1_1:25972066-25972085 | None:intergenic | 55.0% | |
| TCCTCATACTACGCTTCGCG+TGG | - | chr1_1:25972062-25972081 | Msa0015830:intron | 55.0% | |
| ACCACGCGAAGCGTAGTATG+AGG | + | chr1_1:25972066-25972085 | None:intergenic | 55.0% | |
| TGGAGGAGGAACGTACGGGA+AGG | - | chr1_1:25971960-25971979 | Msa0015830:CDS | 60.0% | |
| TGGAGGAGGAACGTACGGGA+AGG | - | chr1_1:25971960-25971979 | Msa0015830:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 25971889 | 25972637 | 25971889 | ID=Msa0015830;Name=Msa0015830 |
| chr1_1 | mRNA | 25971889 | 25972637 | 25971889 | ID=Msa0015830-mRNA-1;Parent=Msa0015830;Name=Msa0015830-mRNA-1;_AED=0.01;_eAED=0.02;_QI=0|0|0|1|1|1|3|0|187 |
| chr1_1 | exon | 25972399 | 25972637 | 25972399 | ID=Msa0015830-mRNA-1:exon:8830;Parent=Msa0015830-mRNA-1 |
| chr1_1 | exon | 25972169 | 25972310 | 25972169 | ID=Msa0015830-mRNA-1:exon:8829;Parent=Msa0015830-mRNA-1 |
| chr1_1 | exon | 25971889 | 25972071 | 25971889 | ID=Msa0015830-mRNA-1:exon:8828;Parent=Msa0015830-mRNA-1 |
| chr1_1 | CDS | 25972399 | 25972637 | 25972399 | ID=Msa0015830-mRNA-1:cds;Parent=Msa0015830-mRNA-1 |
| chr1_1 | CDS | 25972169 | 25972310 | 25972169 | ID=Msa0015830-mRNA-1:cds;Parent=Msa0015830-mRNA-1 |
| chr1_1 | CDS | 25971889 | 25972071 | 25971889 | ID=Msa0015830-mRNA-1:cds;Parent=Msa0015830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
