AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0015900

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0015900 MtrunA17_Chr1g0167661 73.462 260 33 2 1 230 1 254 8.44e-135 379
Msa0015900 MtrunA17_Chr1g0167691 76.628 261 24 4 1 230 1 255 5.52e-129 364
Msa0015900 MtrunA17_Chr1g0187761 55.094 265 77 6 1 230 1 258 6.63e-84 250
Msa0015900 MtrunA17_Chr7g0261281 40.702 285 107 7 1 230 1 278 1.60e-53 173
Msa0015900 MtrunA17_Chr7g0274581 35.798 257 79 7 1 223 1 205 3.71e-43 144
Msa0015900 MtrunA17_Chr1g0203411 59.483 116 17 1 1 86 1 116 4.55e-42 144
Msa0015900 MtrunA17_Chr2g0323351 52.318 151 32 4 1 120 1 142 2.07e-40 139
Msa0015900 MtrunA17_Chr4g0039971 58.120 117 19 1 1 87 2 118 1.03e-39 139
Msa0015900 MtrunA17_Chr2g0323411 57.265 117 20 1 1 87 1 117 1.07e-39 139
Msa0015900 MtrunA17_Chr4g0042671 59.483 116 17 1 1 86 1 116 3.42e-39 139
Msa0015900 MtrunA17_Chr4g0037141 55.932 118 22 1 1 88 1 118 3.44e-39 136
Msa0015900 MtrunA17_Chr2g0281071 57.627 118 19 2 1 87 1 118 3.80e-39 138
Msa0015900 MtrunA17_Chr7g0247131 68.966 87 23 1 12 94 8 94 6.10e-39 135
Msa0015900 MtrunA17_Chr4g0048511 56.780 118 20 2 1 87 1 118 8.31e-39 137
Msa0015900 MtrunA17_Chr4g0022901 39.450 218 117 5 1 214 30 236 8.86e-39 135
Msa0015900 MtrunA17_Chr8g0346561 56.034 116 21 1 1 86 1 116 1.85e-38 135
Msa0015900 MtrunA17_Chr8g0349261 55.462 119 21 2 1 87 1 119 2.01e-38 135
Msa0015900 MtrunA17_Chr3g0115821 54.701 117 23 1 1 87 1 117 2.24e-38 136
Msa0015900 MtrunA17_Chr4g0022931 70.455 88 24 1 1 86 30 117 2.96e-38 134
Msa0015900 MtrunA17_Chr7g0217741 56.897 116 20 1 1 86 1 116 4.03e-38 134
Msa0015900 MtrunA17_Chr7g0275911 55.085 118 23 1 1 88 1 118 4.60e-38 133
Msa0015900 MtrunA17_Chr4g0068061 55.172 116 22 1 1 86 1 116 8.81e-38 134
Msa0015900 MtrunA17_Chr6g0453471 56.897 116 20 1 1 86 1 116 1.73e-37 134
Msa0015900 MtrunA17_Chr3g0131121 54.310 116 23 1 1 86 1 116 7.39e-37 130
Msa0015900 MtrunA17_Chr4g0022911 67.045 88 28 1 15 101 46 133 2.77e-36 129
Msa0015900 MtrunA17_Chr8g0385321 53.448 116 24 1 1 86 1 116 7.30e-36 129
Msa0015900 MtrunA17_Chr4g0070611 47.692 130 38 1 1 100 1 130 8.11e-36 128
Msa0015900 MtrunA17_Chr4g0070641 49.612 129 30 2 1 94 1 129 1.25e-35 124
Msa0015900 MtrunA17_Chr2g0311221 56.881 109 17 1 3 81 5 113 1.37e-35 128
Msa0015900 MtrunA17_Chr4g0032401 68.675 83 26 0 6 88 41 123 1.91e-35 128
Msa0015900 MtrunA17_Chr5g0410961 52.991 117 25 1 1 87 1 117 2.04e-35 128
Msa0015900 MtrunA17_Chr2g0328771 66.667 90 28 1 1 88 37 126 3.34e-35 127
Msa0015900 MtrunA17_Chr4g0044421 71.233 73 21 0 15 87 45 117 4.84e-35 123
Msa0015900 MtrunA17_Chr7g0228891 47.143 140 40 2 1 106 1 140 4.99e-35 125
Msa0015900 MtrunA17_Chr3g0121241 50.877 114 26 1 5 88 35 148 6.18e-35 126
Msa0015900 MtrunA17_Chr4g0058631 72.000 75 21 0 13 87 43 117 6.57e-35 127
Msa0015900 MtrunA17_Chr4g0055981 51.786 112 46 1 4 107 69 180 7.99e-35 124
Msa0015900 MtrunA17_Chr3g0092401 52.586 116 25 1 1 86 2 117 1.53e-34 125
Msa0015900 MtrunA17_Chr1g0193801 72.973 74 20 0 13 86 43 116 2.00e-34 126
Msa0015900 MtrunA17_Chr4g0022891 53.097 113 23 1 1 83 1 113 2.36e-34 123
Msa0015900 MtrunA17_Chr1g0203441 60.000 90 36 0 6 95 37 126 2.80e-34 123
Msa0015900 MtrunA17_Chr5g0435101 68.493 73 23 0 15 87 44 116 2.81e-34 122
Msa0015900 MtrunA17_Chr7g0270891 72.973 74 20 0 13 86 43 116 3.00e-34 125
Msa0015900 MtrunA17_Chr1g0193371 75.000 72 18 0 15 86 45 116 3.11e-34 125
Msa0015900 MtrunA17_Chr7g0217221 52.586 116 25 1 1 86 1 116 3.14e-34 123
Msa0015900 MtrunA17_Chr3g0117091 63.218 87 32 0 1 87 31 117 3.41e-34 125
Msa0015900 MtrunA17_Chr7g0240821 53.509 114 51 1 12 125 31 142 3.45e-34 122
Msa0015900 MtrunA17_Chr1g0211161 71.233 73 21 0 15 87 46 118 3.58e-34 122
Msa0015900 MtrunA17_Chr4g0060721 50.862 116 27 1 1 86 2 117 4.82e-34 124
Msa0015900 MtrunA17_Chr5g0395281 72.603 73 20 0 15 87 45 117 8.15e-34 123
Msa0015900 MtrunA17_Chr3g0088461 69.136 81 25 0 6 86 46 126 1.19e-33 123
Msa0015900 MtrunA17_Chr3g0110351 52.586 116 25 1 1 86 1 116 1.35e-33 122
Msa0015900 MtrunA17_Chr1g0194951 50.862 116 27 1 1 86 1 116 1.46e-33 124
Msa0015900 MtrunA17_Chr6g0453211 53.153 111 22 1 1 81 1 111 1.86e-33 122
Msa0015900 MtrunA17_Chr1g0151941 48.305 118 30 1 1 87 1 118 1.90e-33 120
Msa0015900 MtrunA17_Chr4g0057031 51.282 117 27 1 1 87 1 117 2.24e-33 121
Msa0015900 MtrunA17_Chr3g0103281 50.000 116 28 1 1 86 1 116 2.42e-33 122
Msa0015900 MtrunA17_Chr5g0434571 52.586 116 25 1 1 86 37 152 2.98e-33 122
Msa0015900 MtrunA17_Chr5g0400821 42.945 163 54 4 1 130 1 157 4.31e-33 121
Msa0015900 MtrunA17_Chr6g0470971 54.255 94 43 0 6 99 38 131 4.51e-33 120
Msa0015900 MtrunA17_Chr7g0271241 46.497 157 63 5 15 155 45 196 6.93e-33 122
Msa0015900 MtrunA17_Chr7g0254411 52.586 116 25 1 1 86 1 116 1.96e-32 120
Msa0015900 MtrunA17_Chr2g0309911 67.568 74 24 0 15 88 44 117 4.68e-32 119
Msa0015900 MtrunA17_Chr1g0152011 41.781 146 54 1 1 115 1 146 8.31e-32 119
Msa0015900 MtrunA17_Chr8g0387421 67.568 74 24 0 13 86 43 116 9.25e-32 118
Msa0015900 MtrunA17_Chr8g0342481 58.621 87 35 1 6 91 36 122 1.22e-31 119
Msa0015900 MtrunA17_Chr4g0022881 49.123 114 28 1 1 84 1 114 1.33e-31 115
Msa0015900 MtrunA17_Chr8g0342521 65.753 73 25 0 15 87 45 117 2.30e-31 117
Msa0015900 MtrunA17_Chr2g0330041 67.123 73 24 0 15 87 45 117 2.69e-31 118
Msa0015900 MtrunA17_Chr7g0269831 55.172 116 22 1 1 86 1 116 3.77e-31 117
Msa0015900 MtrunA17_Chr8g0342541 64.384 73 26 0 15 87 45 117 5.88e-31 116
Msa0015900 MtrunA17_Chr5g0417821 70.833 72 21 0 16 87 41 112 7.02e-31 115
Msa0015900 MtrunA17_Chr8g0343831 68.056 72 23 0 15 86 41 112 8.38e-31 114
Msa0015900 MtrunA17_Chr3g0135311 47.059 119 32 1 1 88 1 119 1.57e-30 115
Msa0015900 MtrunA17_Chr5g0397231 68.493 73 23 0 6 78 36 108 1.89e-30 115
Msa0015900 MtrunA17_Chr4g0028311 46.610 118 32 1 1 87 1 118 2.30e-30 114
Msa0015900 MtrunA17_Chr7g0228231 62.025 79 30 0 15 93 47 125 5.63e-30 110
Msa0015900 MtrunA17_Chr6g0452271 46.154 117 33 1 1 87 1 117 1.21e-29 112
Msa0015900 MtrunA17_Chr5g0434931 59.211 76 31 0 13 88 66 141 2.99e-29 110
Msa0015900 MtrunA17_Chr6g0450101 56.180 89 37 1 15 103 47 133 3.24e-29 108
Msa0015900 MtrunA17_Chr8g0354661 64.384 73 26 0 13 85 68 140 3.26e-29 114
Msa0015900 MtrunA17_Chr1g0186061 66.197 71 24 0 15 85 53 123 5.78e-29 109
Msa0015900 MtrunA17_Chr1g0168661 66.216 74 25 0 15 88 54 127 7.07e-29 109
Msa0015900 MtrunA17_Chr5g0434911 59.211 76 31 0 13 88 52 127 7.58e-29 109
Msa0015900 MtrunA17_Chr4g0030881 44.286 140 70 3 11 142 40 179 1.32e-28 108
Msa0015900 MtrunA17_Chr1g0180391 63.889 72 26 0 15 86 52 123 2.15e-28 107
Msa0015900 MtrunA17_Chr7g0264641 42.857 119 37 1 1 88 1 119 4.64e-28 107
Msa0015900 MtrunA17_Chr1g0154031 64.789 71 25 0 15 85 109 179 7.00e-28 109
Msa0015900 MtrunA17_Chr2g0327351 46.847 111 28 1 1 80 1 111 7.36e-28 107
Msa0015900 MtrunA17_Chr5g0434831 58.667 75 31 0 13 87 38 112 9.65e-28 104
Msa0015900 MtrunA17_Chr7g0220341 50.000 94 47 0 15 108 60 153 1.15e-27 106
Msa0015900 MtrunA17_Chr1g0209661 64.789 71 25 0 15 85 60 130 1.26e-27 107
Msa0015900 MtrunA17_Chr4g0072751 47.748 111 27 1 1 80 1 111 1.90e-27 107
Msa0015900 MtrunA17_Chr3g0099131 61.972 71 27 0 15 85 74 144 2.12e-27 109
Msa0015900 MtrunA17_Chr8g0360111 62.857 70 26 0 13 82 56 125 2.19e-27 105
Msa0015900 MtrunA17_Chr2g0327821 45.133 113 56 1 15 121 39 151 2.27e-27 104
Msa0015900 MtrunA17_Chr3g0080861 63.380 71 26 0 15 85 70 140 2.78e-27 108
Msa0015900 MtrunA17_Chr7g0228991 60.274 73 29 0 16 88 63 135 3.25e-27 105
Msa0015900 MtrunA17_Chr4g0054391 41.781 146 53 2 1 114 1 146 5.13e-27 105
Msa0015900 MtrunA17_Chr7g0229101 62.319 69 26 0 15 83 5 73 7.94e-27 102
Msa0015900 MtrunA17_Chr1g0194301 47.748 111 51 2 15 118 66 176 9.42e-27 103
Msa0015900 MtrunA17_Chr5g0434901 63.636 66 24 0 18 83 9 74 1.30e-26 99.4
Msa0015900 MtrunA17_Chr6g0487491 43.651 126 32 2 1 87 1 126 1.39e-26 103
Msa0015900 MtrunA17_Chr5g0434841 57.333 75 32 0 13 87 51 125 2.78e-26 103
Msa0015900 MtrunA17_Chr1g0194291 63.380 71 26 0 15 85 54 124 3.63e-26 102
Msa0015900 MtrunA17_Chr7g0229131 49.495 99 44 2 15 112 5 98 4.54e-26 99.8
Msa0015900 MtrunA17_Chr1g0192411 34.328 201 101 7 13 205 43 220 2.16e-25 102
Msa0015900 MtrunA17_Chr2g0322521 64.789 71 25 0 15 85 62 132 2.49e-25 102
Msa0015900 MtrunA17_Chr4g0068921 65.714 70 24 0 15 84 57 126 1.71e-24 96.3
Msa0015900 MtrunA17_Chr2g0293911 65.714 70 24 0 15 84 57 126 9.47e-24 97.1
Msa0015900 MtrunA17_Chr4g0008551 43.077 130 70 2 18 147 71 196 2.45e-23 96.3
Msa0015900 MtrunA17_Chr8g0334881 57.692 78 29 3 14 87 41 118 8.44e-22 91.7
Msa0015900 MtrunA17_Chr2g0294811 51.136 88 13 1 1 58 1 88 9.19e-22 86.7
Msa0015900 MtrunA17_Chr3g0093811 50.633 79 39 0 8 86 8 86 4.10e-21 89.0
Msa0015900 MtrunA17_Chr5g0440781 50.704 71 34 1 15 84 45 115 7.26e-21 86.3
Msa0015900 MtrunA17_Chr5g0417621 39.655 116 61 2 18 128 167 278 1.10e-20 89.7
Msa0015900 MtrunA17_Chr6g0480581 56.716 67 29 0 18 84 37 103 1.44e-20 87.0
Msa0015900 MtrunA17_Chr4g0042611 50.000 88 14 1 1 58 1 88 1.51e-20 82.8
Msa0015900 MtrunA17_Chr5g0429661 38.732 142 75 3 18 152 155 291 1.85e-20 88.6
Msa0015900 MtrunA17_Chr5g0440761 50.704 71 34 1 15 84 45 115 2.32e-20 86.7
Msa0015900 MtrunA17_Chr5g0441141 50.704 71 34 1 15 84 45 115 2.72e-20 86.7
Msa0015900 MtrunA17_Chr2g0323321 75.000 48 12 0 15 62 44 91 2.99e-20 82.8
Msa0015900 MtrunA17_Chr4g0042501 40.625 96 53 1 18 113 138 229 4.23e-20 87.8
Msa0015900 MtrunA17_Chr4g0013361 46.316 95 48 3 14 106 41 134 4.75e-20 86.7
Msa0015900 MtrunA17_Chr3g0133601 55.882 68 30 0 18 85 70 137 5.16e-20 85.1
Msa0015900 MtrunA17_Chr6g0454921 54.412 68 31 0 18 85 48 115 1.13e-19 84.0
Msa0015900 MtrunA17_Chr5g0401731 54.412 68 31 0 18 85 48 115 3.25e-19 84.7
Msa0015900 MtrunA17_Chr1g0177901 46.067 89 46 1 18 106 27 113 3.87e-19 82.4
Msa0015900 MtrunA17_Chr5g0441131 49.296 71 35 1 15 84 42 112 1.04e-18 80.5
Msa0015900 MtrunA17_Chr7g0238631 55.072 69 31 0 18 86 146 214 1.05e-18 84.3
Msa0015900 MtrunA17_Chr8g0342461 71.111 45 13 0 15 59 46 90 2.88e-18 78.2
Msa0015900 MtrunA17_Chr8g0342471 71.111 45 13 0 15 59 46 90 3.79e-18 77.8
Msa0015900 MtrunA17_Chr6g0460661 50.794 63 31 0 18 80 49 111 3.81e-18 78.6
Msa0015900 MtrunA17_Chr4g0058991 55.738 61 27 0 18 78 242 302 4.38e-18 82.4
Msa0015900 MtrunA17_Chr7g0228401 50.000 72 34 1 18 89 312 381 5.74e-18 82.0
Msa0015900 MtrunA17_Chr7g0228531 34.043 188 94 6 18 193 253 422 6.87e-18 81.6
Msa0015900 MtrunA17_Chr3g0117511 50.000 68 34 0 18 85 216 283 9.30e-18 81.3
Msa0015900 MtrunA17_Chr3g0139671 50.725 69 34 0 18 86 118 186 1.09e-17 81.6
Msa0015900 MtrunA17_Chr4g0053431 51.471 68 33 0 18 85 38 105 1.40e-17 79.3
Msa0015900 MtrunA17_Chr1g0157731 36.036 111 63 1 18 120 124 234 1.83e-17 80.9
Msa0015900 MtrunA17_Chr5g0395221 69.565 46 14 0 13 58 43 88 2.79e-17 73.9
Msa0015900 MtrunA17_Chr6g0460671 51.471 68 33 0 18 85 132 199 3.94e-17 79.0
Msa0015900 MtrunA17_Chr8g0342531 66.667 45 15 0 15 59 45 89 5.75e-17 75.5
Msa0015900 MtrunA17_Chr8g0342511 67.442 43 14 0 15 57 45 87 6.90e-17 73.6
Msa0015900 MtrunA17_Chr3g0099141 58.000 50 21 0 15 64 73 122 1.11e-16 73.9
Msa0015900 MtrunA17_Chr5g0437321 52.308 65 31 0 18 82 52 116 2.35e-16 76.3
Msa0015900 MtrunA17_Chr7g0254261 51.471 68 33 0 18 85 122 189 2.53e-16 76.6
Msa0015900 MtrunA17_Chr3g0125801 52.941 68 32 0 18 85 49 116 2.94e-16 75.9
Msa0015900 MtrunA17_Chr5g0434871 60.000 45 18 0 44 88 2 46 4.04e-16 70.5
Msa0015900 MtrunA17_Chr7g0233061 36.264 91 58 0 18 108 211 301 1.50e-15 74.7
Msa0015900 MtrunA17_Chr5g0397841 52.459 61 29 0 18 78 143 203 1.77e-14 72.0
Msa0015900 MtrunA17_Chr7g0228481 29.787 188 102 6 18 193 253 422 3.30e-14 71.2
Msa0015900 MtrunA17_Chr7g0238651 41.333 75 44 0 18 92 43 117 1.50e-13 68.9
Msa0015900 MtrunA17_Chr5g0425591 52.000 50 23 1 15 63 42 91 2.66e-13 63.9
Msa0015900 MtrunA17_Chr6g0453751 52.000 50 23 1 15 63 61 110 3.12e-12 62.0
Msa0015900 MtrunA17_Chr5g0416341 37.647 85 49 1 18 98 59 143 3.81e-12 65.1
Msa0015900 MtrunA17_Chr8g0362231 37.755 98 54 2 21 118 58 148 5.88e-12 64.3
Msa0015900 MtrunA17_Chr2g0322831 56.410 39 17 0 40 78 34 72 5.41e-11 57.4
Msa0015900 MtrunA17_Chr5g0421201 34.211 114 53 3 40 131 15 128 5.72e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0015900 AT3G23250.1 42.254 284 104 8 1 227 1 281 2.28e-58 186
Msa0015900 AT1G06180.1 43.542 271 87 10 1 230 1 246 4.86e-52 169
Msa0015900 AT2G31180.1 41.418 268 100 8 1 230 1 249 7.99e-52 168
Msa0015900 AT3G23250.2 42.982 228 98 8 28 227 1 224 3.50e-43 145
Msa0015900 AT1G16490.1 57.983 119 20 1 3 91 5 123 4.23e-42 144
Msa0015900 AT3G61250.1 45.402 174 55 3 1 134 1 174 6.42e-42 144
Msa0015900 AT1G79180.1 44.560 193 68 5 3 162 5 191 6.82e-42 144
Msa0015900 AT4G21440.1 58.120 117 19 1 1 87 1 117 2.01e-41 144
Msa0015900 AT1G79180.2 51.974 152 64 4 14 162 79 224 9.96e-41 142
Msa0015900 AT4G05100.1 58.475 118 18 2 1 87 1 118 4.21e-40 140
Msa0015900 AT5G16770.4 57.265 117 20 1 1 87 1 117 8.69e-40 139
Msa0015900 AT5G16770.3 57.265 117 20 1 1 87 1 117 8.69e-40 139
Msa0015900 AT4G28110.1 54.622 119 24 1 1 89 1 119 8.81e-40 138
Msa0015900 AT5G16770.1 57.265 117 20 1 1 87 1 117 1.57e-39 139
Msa0015900 AT5G16770.2 57.265 117 20 1 1 87 1 117 1.57e-39 139
Msa0015900 AT2G16720.1 55.932 118 22 1 1 88 1 118 2.07e-39 137
Msa0015900 AT1G35515.1 55.085 118 23 1 1 88 1 118 3.01e-39 135
Msa0015900 AT3G01140.2 58.120 117 19 1 1 87 1 117 3.09e-39 139
Msa0015900 AT4G09460.1 50.714 140 36 3 1 107 1 140 4.44e-39 135
Msa0015900 AT3G02940.2 55.556 117 22 1 1 87 1 117 5.10e-39 137
Msa0015900 AT3G02940.1 55.556 117 22 1 1 87 1 117 9.45e-39 137
Msa0015900 AT3G02940.3 55.556 117 22 1 1 87 1 117 9.45e-39 137
Msa0015900 AT4G38620.1 55.085 118 23 1 1 88 1 118 1.99e-38 135
Msa0015900 AT3G01140.1 57.265 117 20 1 1 87 44 160 2.76e-38 137
Msa0015900 AT5G15310.1 57.265 117 20 1 1 87 1 117 4.60e-38 135
Msa0015900 AT5G15310.2 57.265 117 20 1 1 87 1 117 6.56e-38 134
Msa0015900 AT5G15310.4 57.265 117 20 1 1 87 1 117 6.65e-38 132
Msa0015900 AT1G22640.1 54.237 118 24 1 1 88 1 118 1.61e-37 132
Msa0015900 AT1G56160.1 56.140 114 20 1 3 86 5 118 2.32e-37 132
Msa0015900 AT5G49330.1 55.172 116 22 1 1 86 1 116 3.34e-37 133
Msa0015900 AT3G12820.1 54.783 115 22 1 3 87 5 119 5.27e-37 130
Msa0015900 AT1G34670.1 53.846 117 24 1 1 87 1 117 2.03e-36 132
Msa0015900 AT5G60890.1 54.310 116 23 1 1 86 1 116 2.12e-36 130
Msa0015900 AT5G54230.1 78.082 73 16 0 15 87 45 117 2.41e-36 130
Msa0015900 AT4G34990.1 54.701 117 23 1 1 87 1 117 7.98e-36 128
Msa0015900 AT3G13540.1 69.333 75 23 0 13 87 54 128 1.48e-35 126
Msa0015900 AT3G12820.2 76.056 71 17 0 17 87 1 71 1.96e-35 124
Msa0015900 AT5G65230.1 75.342 73 18 0 15 87 45 117 2.09e-35 127
Msa0015900 AT2G47460.1 53.390 118 25 1 1 88 1 118 2.12e-35 129
Msa0015900 AT5G35550.2 70.370 81 24 0 14 94 49 129 2.27e-35 126
Msa0015900 AT1G18570.1 55.085 118 22 2 1 87 1 118 3.05e-35 128
Msa0015900 AT3G62610.1 54.310 116 23 1 1 86 1 116 3.20e-35 128
Msa0015900 AT4G17785.2 51.695 118 26 2 1 87 1 118 4.03e-35 128
Msa0015900 AT4G17785.1 51.695 118 26 2 1 87 1 118 4.41e-35 128
Msa0015900 AT3G28910.1 52.000 125 29 2 1 95 1 124 4.90e-35 127
Msa0015900 AT5G35550.1 68.293 82 26 0 13 94 45 126 1.41e-34 124
Msa0015900 AT5G14750.1 68.919 74 23 0 13 86 47 120 1.80e-34 122
Msa0015900 AT5G16600.1 53.448 116 24 1 1 86 1 116 1.82e-34 125
Msa0015900 AT4G12350.1 52.137 117 26 1 1 87 1 117 2.34e-34 124
Msa0015900 AT5G10280.1 72.603 73 20 0 15 87 45 117 2.58e-34 125
Msa0015900 AT5G62470.1 53.913 115 24 1 1 86 1 115 3.14e-34 125
Msa0015900 AT5G62470.2 53.448 116 24 1 1 86 1 116 3.74e-34 125
Msa0015900 AT1G74080.1 52.137 117 26 1 1 87 1 117 4.81e-34 124
Msa0015900 AT5G14750.3 70.000 70 21 0 17 86 17 86 6.20e-34 120
Msa0015900 AT5G12870.1 66.667 81 27 0 6 86 42 122 7.38e-34 123
Msa0015900 AT1G74650.1 52.500 120 27 1 1 90 1 120 8.90e-34 124
Msa0015900 AT5G40330.1 67.568 74 24 0 13 86 43 116 1.02e-33 121
Msa0015900 AT4G22680.1 41.358 162 59 3 1 128 1 160 1.06e-33 122
Msa0015900 AT1G66230.1 52.586 116 25 1 1 86 1 116 1.12e-33 122
Msa0015900 AT1G57560.1 69.863 73 22 0 15 87 45 117 1.18e-33 123
Msa0015900 AT1G57560.2 69.863 73 22 0 15 87 45 117 1.36e-33 122
Msa0015900 AT4G01680.3 71.622 74 21 0 13 86 43 116 1.83e-33 121
Msa0015900 AT3G08500.1 66.667 81 27 0 6 86 54 134 2.12e-33 123
Msa0015900 AT3G27920.1 65.333 75 26 0 13 87 45 119 2.17e-33 120
Msa0015900 AT5G61420.2 51.282 117 27 1 1 87 1 117 3.25e-33 123
Msa0015900 AT4G01680.1 71.622 74 21 0 13 86 43 116 4.53e-33 122
Msa0015900 AT1G09540.1 48.361 122 59 1 15 132 45 166 5.77e-33 122
Msa0015900 AT5G62320.1 59.140 93 35 1 15 107 53 142 5.91e-33 119
Msa0015900 AT1G08810.1 51.724 116 26 1 1 86 1 116 6.15e-33 120
Msa0015900 AT5G26660.2 72.222 72 20 0 15 86 14 85 7.88e-33 121
Msa0015900 AT4G01680.2 73.611 72 19 0 15 86 57 128 8.40e-33 122
Msa0015900 AT3G47600.1 51.724 116 26 1 1 86 1 116 1.04e-32 121
Msa0015900 AT5G07690.1 50.847 118 28 1 1 88 1 118 1.16e-32 121
Msa0015900 AT5G14340.1 50.862 116 27 1 1 86 13 128 2.75e-32 119
Msa0015900 AT5G26660.1 72.222 72 20 0 15 86 45 116 3.36e-32 120
Msa0015900 AT5G07700.1 68.421 76 24 0 13 88 43 118 4.15e-32 119
Msa0015900 AT5G07700.2 68.421 76 24 0 13 88 43 118 4.15e-32 119
Msa0015900 AT5G52600.1 61.905 84 32 0 13 96 43 126 4.93e-32 116
Msa0015900 AT1G74430.1 59.574 94 34 1 13 102 43 136 5.24e-32 118
Msa0015900 AT5G56110.1 50.000 116 28 1 1 86 1 116 6.12e-32 119
Msa0015900 AT3G49690.1 47.934 121 32 1 1 90 1 121 9.88e-32 118
Msa0015900 AT3G12720.1 66.216 74 25 0 15 88 55 128 1.21e-31 118
Msa0015900 AT3G47600.2 62.791 86 30 1 1 86 27 110 1.49e-31 118
Msa0015900 AT5G65790.1 47.934 121 32 1 1 90 1 121 1.77e-31 119
Msa0015900 AT5G40350.2 40.764 157 81 6 15 164 5 156 1.80e-31 114
Msa0015900 AT4G25560.1 61.364 88 34 0 6 93 34 121 1.98e-31 117
Msa0015900 AT4G37780.1 44.444 126 39 1 1 95 1 126 3.03e-31 117
Msa0015900 AT5G57620.1 48.305 118 30 1 1 87 1 118 4.43e-31 117
Msa0015900 AT3G13890.2 65.753 73 25 0 15 87 45 117 4.44e-31 117
Msa0015900 AT1G63910.1 62.963 81 30 0 6 86 36 116 4.46e-31 117
Msa0015900 AT5G40350.1 40.764 157 81 6 15 164 50 201 4.81e-31 114
Msa0015900 AT3G01530.1 47.445 137 66 3 15 147 58 192 9.84e-31 113
Msa0015900 AT5G23000.1 49.153 118 29 2 1 87 1 118 2.68e-30 115
Msa0015900 AT3G13890.1 64.384 73 26 0 16 88 55 127 4.86e-30 115
Msa0015900 AT2G36890.1 44.531 128 40 1 1 97 1 128 5.22e-30 113
Msa0015900 AT5G52260.1 63.529 85 31 0 6 90 36 120 5.54e-30 112
Msa0015900 AT2G36890.2 44.531 128 40 1 1 97 42 169 9.41e-30 113
Msa0015900 AT1G18710.1 62.195 82 29 1 7 86 35 116 2.28e-29 111
Msa0015900 AT3G30210.1 56.522 92 37 1 15 106 60 148 2.53e-29 111
Msa0015900 AT5G55020.1 65.278 72 25 0 15 86 59 130 3.81e-29 114
Msa0015900 AT4G13480.1 65.385 78 27 0 15 92 39 116 4.02e-29 110
Msa0015900 AT3G27810.2 63.889 72 26 0 15 86 4 75 5.33e-29 107
Msa0015900 AT2G47190.1 67.606 71 23 0 15 85 53 123 5.88e-29 110
Msa0015900 AT2G26960.1 65.714 70 24 0 15 84 53 122 8.10e-29 112
Msa0015900 AT2G32460.1 64.789 71 25 0 15 85 51 121 1.10e-28 112
Msa0015900 AT2G32460.2 64.789 71 25 0 15 85 39 109 1.11e-28 112
Msa0015900 AT3G24310.1 58.889 90 35 1 15 104 51 138 2.24e-28 108
Msa0015900 AT3G27810.1 63.889 72 26 0 15 86 53 124 2.33e-28 107
Msa0015900 AT4G26930.1 63.889 72 26 0 13 84 50 121 3.73e-28 110
Msa0015900 AT3G28470.1 47.273 110 28 1 1 80 1 110 4.15e-28 108
Msa0015900 AT5G59780.2 58.228 79 33 0 12 90 17 95 5.18e-28 106
Msa0015900 AT5G06100.1 62.857 70 26 0 16 85 66 135 5.29e-28 110
Msa0015900 AT3G46130.4 58.228 79 33 0 12 90 17 95 5.71e-28 106
Msa0015900 AT3G46130.3 60.526 76 30 0 15 90 10 85 5.98e-28 106
Msa0015900 AT3G48920.1 52.083 96 42 1 6 101 42 133 7.00e-28 107
Msa0015900 AT1G66370.1 59.459 74 30 0 12 85 38 111 8.52e-28 106
Msa0015900 AT3G53200.2 60.811 74 29 0 12 85 6 79 9.74e-28 105
Msa0015900 AT5G06100.5 62.857 70 26 0 16 85 66 135 9.83e-28 110
Msa0015900 AT5G06100.2 62.857 70 26 0 16 85 66 135 9.83e-28 110
Msa0015900 AT5G06100.3 62.857 70 26 0 16 85 66 135 9.83e-28 110
Msa0015900 AT5G06100.4 62.857 70 26 0 16 85 66 135 9.83e-28 110
Msa0015900 AT5G59780.3 63.380 71 26 0 15 85 41 111 1.03e-27 105
Msa0015900 AT3G46130.1 60.526 76 30 0 15 90 42 117 1.71e-27 105
Msa0015900 AT1G68320.1 61.250 80 29 1 15 92 52 131 3.43e-27 105
Msa0015900 AT3G53200.1 63.380 71 26 0 15 85 42 112 4.35e-27 104
Msa0015900 AT3G11440.2 61.429 70 27 0 16 85 75 144 4.47e-27 108
Msa0015900 AT1G22640.3 72.131 61 17 0 28 88 1 61 5.14e-27 103
Msa0015900 AT3G11440.3 61.429 70 27 0 16 85 75 144 7.50e-27 108
Msa0015900 AT3G11440.4 61.429 70 27 0 16 85 75 144 7.50e-27 108
Msa0015900 AT3G11440.1 61.429 70 27 0 16 85 75 144 7.50e-27 108
Msa0015900 AT1G25340.1 60.000 80 30 1 15 92 51 130 2.04e-26 103
Msa0015900 AT1G48000.1 62.857 70 26 0 15 84 65 134 1.76e-25 100
Msa0015900 AT1G25340.2 60.000 75 28 1 20 92 51 125 2.13e-24 98.2
Msa0015900 AT1G66380.1 60.811 74 29 0 12 85 38 111 2.79e-24 94.4
Msa0015900 AT3G06490.1 56.044 91 37 1 15 102 52 142 3.23e-24 98.6
Msa0015900 AT1G25340.3 60.000 75 28 1 20 92 51 125 3.51e-24 98.2
Msa0015900 AT5G49620.1 44.697 132 63 2 4 132 55 179 4.25e-24 97.8
Msa0015900 AT5G14750.4 64.407 59 21 0 28 86 1 59 4.49e-24 94.0
Msa0015900 AT5G14750.2 64.407 59 21 0 28 86 1 59 4.49e-24 94.0
Msa0015900 AT1G66380.3 61.972 71 27 0 15 85 8 78 4.53e-24 92.8
Msa0015900 AT1G66390.1 60.811 74 29 0 12 85 38 111 1.35e-23 95.5
Msa0015900 AT1G71030.2 50.000 82 37 1 21 98 5 86 6.37e-23 92.0
Msa0015900 AT1G71030.1 50.000 82 37 1 21 98 19 100 8.65e-23 92.0
Msa0015900 AT1G56650.1 58.108 74 31 0 12 85 38 111 1.52e-22 92.8
Msa0015900 AT3G09230.1 32.749 171 103 2 18 188 88 246 3.54e-21 91.3
Msa0015900 AT2G26950.1 53.030 66 31 0 13 78 47 112 6.50e-21 90.5
Msa0015900 AT3G60460.1 53.086 81 35 3 14 92 42 121 1.01e-20 88.6
Msa0015900 AT5G49620.2 41.791 134 61 2 16 132 60 193 1.99e-20 88.2
Msa0015900 AT1G17950.1 57.353 68 29 0 18 85 38 105 2.59e-20 86.7
Msa0015900 AT1G69560.1 53.623 69 32 0 18 86 140 208 4.08e-20 87.4
Msa0015900 AT1G69560.2 53.623 69 32 0 18 86 156 224 4.67e-20 87.4
Msa0015900 AT5G58850.1 32.642 193 97 6 18 201 138 306 9.02e-20 87.4
Msa0015900 AT4G33450.1 54.412 68 31 0 18 85 52 119 1.29e-19 84.7
Msa0015900 AT1G26780.1 54.412 68 31 0 18 85 131 198 1.33e-19 85.5
Msa0015900 AT1G26780.2 54.412 68 31 0 18 85 131 198 1.68e-19 86.3
Msa0015900 AT2G39880.1 55.882 68 30 0 18 85 83 150 2.44e-19 85.9
Msa0015900 AT3G27785.1 37.600 125 73 2 18 139 222 344 5.73e-19 85.1
Msa0015900 AT3G09370.2 43.860 114 51 3 18 119 168 280 5.95e-19 85.5
Msa0015900 AT3G09370.3 43.860 114 51 3 18 119 176 288 6.02e-19 85.5
Msa0015900 AT3G09370.1 43.860 114 51 3 18 119 163 275 6.43e-19 85.5
Msa0015900 AT1G18960.1 51.351 74 34 1 13 86 38 109 1.53e-18 82.8
Msa0015900 AT5G40360.1 34.921 126 63 3 18 142 191 298 1.58e-18 83.6
Msa0015900 AT3G55730.1 50.667 75 37 0 18 92 89 163 2.42e-18 83.2
Msa0015900 AT4G37260.1 52.941 68 32 0 18 85 46 113 2.64e-18 82.4
Msa0015900 AT2G23290.1 54.412 68 31 0 18 85 46 113 3.40e-18 82.0
Msa0015900 AT1G73410.1 55.556 72 32 0 18 89 39 110 6.05e-18 80.1
Msa0015900 AT5G11510.3 50.725 69 34 0 18 86 114 182 6.12e-18 82.8
Msa0015900 AT5G11510.1 50.725 69 34 0 18 86 114 182 6.12e-18 82.8
Msa0015900 AT5G11510.4 50.725 69 34 0 18 86 114 182 6.12e-18 82.8
Msa0015900 AT5G02320.1 48.193 83 40 1 18 97 160 242 6.45e-18 82.4
Msa0015900 AT5G02320.2 48.193 83 40 1 18 97 160 242 6.45e-18 82.4
Msa0015900 AT5G11510.5 50.725 69 34 0 18 86 114 182 8.20e-18 82.4
Msa0015900 AT5G11510.2 50.725 69 34 0 18 86 114 182 8.35e-18 82.4
Msa0015900 AT5G02320.3 48.193 83 40 1 18 97 100 182 9.26e-18 82.0
Msa0015900 AT2G25230.1 47.945 73 37 1 18 90 59 130 9.76e-18 79.3
Msa0015900 AT4G18770.1 47.619 84 37 2 2 78 227 310 1.14e-17 81.6
Msa0015900 AT1G73410.2 55.556 72 32 0 18 89 39 110 1.65e-17 78.2
Msa0015900 AT3G29020.1 47.826 69 36 0 18 86 98 166 1.69e-17 79.0
Msa0015900 AT5G17800.1 50.000 70 35 0 16 85 124 193 1.85e-17 80.1
Msa0015900 AT5G67300.1 51.471 68 33 0 18 85 39 106 2.06e-17 79.7
Msa0015900 AT3G29020.2 47.826 69 36 0 18 86 100 168 2.49e-17 79.3
Msa0015900 AT4G32730.1 49.275 69 35 0 18 86 120 188 2.96e-17 80.9
Msa0015900 AT4G32730.5 49.275 69 35 0 18 86 120 188 3.15e-17 80.9
Msa0015900 AT4G32730.4 49.275 69 35 0 18 86 120 188 3.15e-17 80.9
Msa0015900 AT4G32730.3 49.275 69 35 0 18 86 120 188 3.15e-17 80.9
Msa0015900 AT4G32730.2 49.275 69 35 0 18 86 120 188 3.15e-17 80.9
Msa0015900 AT3G50060.1 50.000 68 34 0 18 85 39 106 7.47e-17 78.2
Msa0015900 AT5G11050.1 38.614 101 45 1 18 118 138 221 2.11e-16 77.8
Msa0015900 AT4G25560.2 64.706 51 18 0 43 93 5 55 5.25e-16 74.3
Msa0015900 AT5G39700.1 50.794 63 31 0 18 80 89 151 6.40e-15 70.9
Msa0015900 AT4G00540.2 49.275 69 35 0 18 86 139 207 1.91e-14 72.0
Msa0015900 AT4G00540.1 49.275 69 35 0 18 86 137 205 2.70e-14 71.6
Msa0015900 AT2G37630.1 37.000 100 57 1 12 111 34 127 6.74e-14 70.5
Msa0015900 AT5G40430.1 40.845 71 41 1 18 88 86 155 8.84e-14 68.9
Msa0015900 AT1G16490.2 71.111 45 11 1 47 91 12 54 1.83e-13 67.4
Msa0015900 AT5G59780.1 54.902 51 23 0 40 90 1 51 3.04e-13 65.9
Msa0015900 AT3G46130.2 54.902 51 23 0 40 90 1 51 4.34e-13 65.9
Msa0015900 AT2G02820.3 44.118 68 38 0 18 85 63 130 9.23e-13 67.0
Msa0015900 AT2G02820.2 44.118 68 38 0 18 85 63 130 9.94e-13 67.4
Msa0015900 AT2G02820.1 44.118 68 38 0 18 85 63 130 1.08e-12 67.0
Msa0015900 AT1G74650.3 65.116 43 15 0 48 90 2 44 3.55e-12 64.3
Msa0015900 AT1G14350.2 42.647 68 39 0 18 85 58 125 3.65e-12 65.5
Msa0015900 AT1G14350.1 42.647 68 39 0 18 85 58 125 3.65e-12 65.5
Msa0015900 AT3G28910.2 60.417 48 18 1 48 95 2 48 9.75e-12 63.2
Msa0015900 AT4G28110.2 80.000 30 6 0 58 87 4 33 8.59e-11 59.7

Find 28 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTCATTATCAAAAGGGTTT+TGG 0.211007 1_1:+26086729 None:intergenic
CAAAAGCTTTCATCAATTTC+AGG 0.250594 1_1:+26086866 None:intergenic
ATTTCATTGTCTGTTCTTCC+AGG 0.291634 1_1:+26087133 None:intergenic
CTGAAATTGATGAAAGCTTT+TGG 0.299877 1_1:-26086865 Msa0015900:CDS
AAATTTCCTCTCTTAATATC+AGG 0.343705 1_1:+26087650 None:intergenic
GAAACTGTCATAGGATTTGA+TGG 0.346331 1_1:+26086803 None:intergenic
AATTCATTTGAAACTGTCAT+AGG 0.356516 1_1:+26086794 None:intergenic
AGCTTCCATTGAGTTGGAAT+TGG 0.389117 1_1:+26086991 None:intergenic
CATGAAAATGTTTAGAACTC+TGG 0.425811 1_1:+26086650 None:intergenic
TATAACGTGTTCATCAAATC+AGG 0.457240 1_1:-26086689 Msa0015900:CDS
ATGCCATCGTCATTATCAAA+AGG 0.461830 1_1:+26086722 None:intergenic
TGCATGAGTTGCTAGGGAAC+AGG 0.464920 1_1:-26087595 Msa0015900:intron
ATTGTCACAAAAGAGTCTTC+AGG 0.488694 1_1:+26086890 None:intergenic
AAATGCCAATTCCAACTCAA+TGG 0.490366 1_1:-26086996 Msa0015900:CDS
ATGCAGGTTTATTGAGATGT+GGG 0.495585 1_1:-26087709 Msa0015900:intron
TGCCATCGTCATTATCAAAA+GGG 0.500463 1_1:+26086723 None:intergenic
ATTAAGATGCATGAGTTGCT+AGG 0.510133 1_1:-26087602 Msa0015900:CDS
TTGTCACAAAAGAGTCTTCA+GGG 0.515022 1_1:+26086891 None:intergenic
TGATGTAGCTTCCATTGAGT+TGG 0.515373 1_1:+26086985 None:intergenic
GGAAGAGTTGTAGATTGAGA+TGG 0.538903 1_1:-26087688 Msa0015900:CDS
GCAATAGCAGCAAAATTACC+TGG 0.544673 1_1:-26087151 Msa0015900:CDS
TATGCAGGTTTATTGAGATG+TGG 0.549316 1_1:-26087710 Msa0015900:intron
TTAAGACCTGATATTAAGAG+AGG 0.556179 1_1:-26087656 Msa0015900:CDS
GAAAAGAAAGGATTGAAGAA+AGG 0.556619 1_1:-26088089 Msa0015900:intron
TTAAGATGCATGAGTTGCTA+GGG 0.559460 1_1:-26087601 Msa0015900:CDS
GCTCCATGTTGTGAAAAGAA+AGG 0.568642 1_1:-26088101 Msa0015900:CDS
TGTCATAGGATTTGATGGCA+TGG 0.664505 1_1:+26086808 None:intergenic
CATAGGATTTGATGGCATGG+TGG 0.687440 1_1:+26086811 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATGAATATATAGTTTAT+TGG + chr1_1:26087292-26087311 None:intergenic 10.0%
!! AATATGAATATATAGTTTAT+TGG + chr1_1:26087292-26087311 None:intergenic 10.0%
!!! TTTTTTTTGAGAAATCAATA+TGG + chr1_1:26087448-26087467 None:intergenic 15.0%
!! ACAATGAAATAAAAAATGTA+TGG - chr1_1:26087651-26087670 Msa0015900:CDS 15.0%
!! TTAAAAATATATTGTTGATC+TGG + chr1_1:26088004-26088023 None:intergenic 15.0%
!!! TTTTTTTTGAGAAATCAATA+TGG + chr1_1:26087448-26087467 None:intergenic 15.0%
!! ACAATGAAATAAAAAATGTA+TGG - chr1_1:26087651-26087670 Msa0015900:CDS 15.0%
!! TTAAAAATATATTGTTGATC+TGG + chr1_1:26088004-26088023 None:intergenic 15.0%
!!! ATTTTAGTCAAAAACTCATT+TGG - chr1_1:26086838-26086857 Msa0015900:CDS 20.0%
!!! GTGTATTGATTAATTAGTTT+TGG - chr1_1:26087024-26087043 Msa0015900:CDS 20.0%
!!! AAATTTTACAAATGAAGAAG+AGG - chr1_1:26087138-26087157 Msa0015900:CDS 20.0%
!!! ATTTTAGTCAAAAACTCATT+TGG - chr1_1:26086838-26086857 Msa0015900:CDS 20.0%
!!! GTGTATTGATTAATTAGTTT+TGG - chr1_1:26087024-26087043 Msa0015900:CDS 20.0%
!!! AAATTTTACAAATGAAGAAG+AGG - chr1_1:26087138-26087157 Msa0015900:CDS 20.0%
! ATTCTACTTTATGGAAGATT+TGG - chr1_1:26086985-26087004 Msa0015900:CDS 25.0%
! AAATTTCCTCTCTTAATATC+AGG + chr1_1:26087124-26087143 None:intergenic 25.0%
!!! TTCTGATTTTTGTTTTCAGA+TGG - chr1_1:26087594-26087613 Msa0015900:intron 25.0%
!!! CTTTTTTTGGTATTTGAATG+AGG + chr1_1:26087722-26087741 None:intergenic 25.0%
!!! TTGTTTTGACACTCTTTTTT+TGG + chr1_1:26087735-26087754 None:intergenic 25.0%
!! TCTAGTAATTTTTCATCACA+AGG - chr1_1:26087824-26087843 Msa0015900:intron 25.0%
!! AATTCATTTGAAACTGTCAT+AGG + chr1_1:26087980-26087999 None:intergenic 25.0%
! ATTCTACTTTATGGAAGATT+TGG - chr1_1:26086985-26087004 Msa0015900:CDS 25.0%
! AAATTTCCTCTCTTAATATC+AGG + chr1_1:26087124-26087143 None:intergenic 25.0%
!!! TTCTGATTTTTGTTTTCAGA+TGG - chr1_1:26087594-26087613 Msa0015900:intron 25.0%
!!! CTTTTTTTGGTATTTGAATG+AGG + chr1_1:26087722-26087741 None:intergenic 25.0%
!!! TTGTTTTGACACTCTTTTTT+TGG + chr1_1:26087735-26087754 None:intergenic 25.0%
!! TCTAGTAATTTTTCATCACA+AGG - chr1_1:26087824-26087843 Msa0015900:intron 25.0%
!! AATTCATTTGAAACTGTCAT+AGG + chr1_1:26087980-26087999 None:intergenic 25.0%
! AATCCTTTCTTTTCACAACA+TGG + chr1_1:26086676-26086695 None:intergenic 30.0%
GAAAAGAAAGGATTGAAGAA+AGG - chr1_1:26086682-26086701 Msa0015900:CDS 30.0%
! TAAAATAACATCGAAGCGTT+TGG + chr1_1:26086824-26086843 None:intergenic 30.0%
TTGAGAGACATTCTACTTTA+TGG - chr1_1:26086976-26086995 Msa0015900:CDS 30.0%
TTAAGACCTGATATTAAGAG+AGG - chr1_1:26087115-26087134 Msa0015900:CDS 30.0%
!! GAACGACTTTGATTTGAAAA+AGG + chr1_1:26087221-26087240 None:intergenic 30.0%
ACATGAAAATTACATGCGAA+TGG - chr1_1:26087317-26087336 Msa0015900:intron 30.0%
!! TGAATGAGGTTGGTTATTTT+TGG + chr1_1:26087708-26087727 None:intergenic 30.0%
! TTTTGGTATTTGAATGAGGT+TGG + chr1_1:26087718-26087737 None:intergenic 30.0%
CAAAAGCTTTCATCAATTTC+AGG + chr1_1:26087908-26087927 None:intergenic 30.0%
! CTGAAATTGATGAAAGCTTT+TGG - chr1_1:26087906-26087925 Msa0015900:intron 30.0%
TATAACGTGTTCATCAAATC+AGG - chr1_1:26088082-26088101 Msa0015900:intron 30.0%
! AATCCTTTCTTTTCACAACA+TGG + chr1_1:26086676-26086695 None:intergenic 30.0%
GAAAAGAAAGGATTGAAGAA+AGG - chr1_1:26086682-26086701 Msa0015900:CDS 30.0%
! TAAAATAACATCGAAGCGTT+TGG + chr1_1:26086824-26086843 None:intergenic 30.0%
TTGAGAGACATTCTACTTTA+TGG - chr1_1:26086976-26086995 Msa0015900:CDS 30.0%
TTAAGACCTGATATTAAGAG+AGG - chr1_1:26087115-26087134 Msa0015900:CDS 30.0%
!! GAACGACTTTGATTTGAAAA+AGG + chr1_1:26087221-26087240 None:intergenic 30.0%
ACATGAAAATTACATGCGAA+TGG - chr1_1:26087317-26087336 Msa0015900:intron 30.0%
!! TGAATGAGGTTGGTTATTTT+TGG + chr1_1:26087708-26087727 None:intergenic 30.0%
! TTTTGGTATTTGAATGAGGT+TGG + chr1_1:26087718-26087737 None:intergenic 30.0%
CAAAAGCTTTCATCAATTTC+AGG + chr1_1:26087908-26087927 None:intergenic 30.0%
! CTGAAATTGATGAAAGCTTT+TGG - chr1_1:26087906-26087925 Msa0015900:intron 30.0%
TATAACGTGTTCATCAAATC+AGG - chr1_1:26088082-26088101 Msa0015900:intron 30.0%
GAGGATTTCATCTTCATCTA+AGG + chr1_1:26086716-26086735 None:intergenic 35.0%
ACATCCTACATCAACAAACA+TGG - chr1_1:26086736-26086755 Msa0015900:CDS 35.0%
! ATGTCCATGTTTGTTGATGT+AGG + chr1_1:26086743-26086762 None:intergenic 35.0%
ACAAACATGGACATAGCAAT+TGG - chr1_1:26086749-26086768 Msa0015900:CDS 35.0%
! GATAAATACCGGCATGTTTT+GGG + chr1_1:26086783-26086802 None:intergenic 35.0%
! TGATAAATACCGGCATGTTT+TGG + chr1_1:26086784-26086803 None:intergenic 35.0%
AGCGGATAACTGATAAATAC+CGG + chr1_1:26086794-26086813 None:intergenic 35.0%
! GAAGCGTTTGGTAAAAATAG+CGG + chr1_1:26086812-26086831 None:intergenic 35.0%
TATGCAGGTTTATTGAGATG+TGG - chr1_1:26087061-26087080 Msa0015900:CDS 35.0%
ATGCAGGTTTATTGAGATGT+GGG - chr1_1:26087062-26087081 Msa0015900:CDS 35.0%
ATTAAGATGCATGAGTTGCT+AGG - chr1_1:26087169-26087188 Msa0015900:intron 35.0%
TTAAGATGCATGAGTTGCTA+GGG - chr1_1:26087170-26087189 Msa0015900:intron 35.0%
GAAAATTACATGCGAATGGA+AGG - chr1_1:26087321-26087340 Msa0015900:intron 35.0%
GGTAATTACAGATCTCTAGT+AGG - chr1_1:26087342-26087361 Msa0015900:intron 35.0%
AAGCTGTAAACTTTGTTCAG+TGG - chr1_1:26087371-26087390 Msa0015900:intron 35.0%
! GAGATTCGAATTTTGCTTCT+TGG + chr1_1:26087565-26087584 None:intergenic 35.0%
ATTTCATTGTCTGTTCTTCC+AGG + chr1_1:26087641-26087660 None:intergenic 35.0%
AAATGCCAATTCCAACTCAA+TGG - chr1_1:26087775-26087794 Msa0015900:intron 35.0%
TTGTCACAAAAGAGTCTTCA+GGG + chr1_1:26087883-26087902 None:intergenic 35.0%
ATTGTCACAAAAGAGTCTTC+AGG + chr1_1:26087884-26087903 None:intergenic 35.0%
GAAACTGTCATAGGATTTGA+TGG + chr1_1:26087971-26087990 None:intergenic 35.0%
! CGTCATTATCAAAAGGGTTT+TGG + chr1_1:26088045-26088064 None:intergenic 35.0%
!!! AACCCTTTTGATAATGACGA+TGG - chr1_1:26088046-26088065 Msa0015900:intron 35.0%
TGCCATCGTCATTATCAAAA+GGG + chr1_1:26088051-26088070 None:intergenic 35.0%
ATGCCATCGTCATTATCAAA+AGG + chr1_1:26088052-26088071 None:intergenic 35.0%
!!! TTTTGATAATGACGATGGCA+TGG - chr1_1:26088051-26088070 Msa0015900:intron 35.0%
GAGGATTTCATCTTCATCTA+AGG + chr1_1:26086716-26086735 None:intergenic 35.0%
ACATCCTACATCAACAAACA+TGG - chr1_1:26086736-26086755 Msa0015900:CDS 35.0%
! ATGTCCATGTTTGTTGATGT+AGG + chr1_1:26086743-26086762 None:intergenic 35.0%
ACAAACATGGACATAGCAAT+TGG - chr1_1:26086749-26086768 Msa0015900:CDS 35.0%
! GATAAATACCGGCATGTTTT+GGG + chr1_1:26086783-26086802 None:intergenic 35.0%
! TGATAAATACCGGCATGTTT+TGG + chr1_1:26086784-26086803 None:intergenic 35.0%
AGCGGATAACTGATAAATAC+CGG + chr1_1:26086794-26086813 None:intergenic 35.0%
! GAAGCGTTTGGTAAAAATAG+CGG + chr1_1:26086812-26086831 None:intergenic 35.0%
TATGCAGGTTTATTGAGATG+TGG - chr1_1:26087061-26087080 Msa0015900:CDS 35.0%
ATGCAGGTTTATTGAGATGT+GGG - chr1_1:26087062-26087081 Msa0015900:CDS 35.0%
ATTAAGATGCATGAGTTGCT+AGG - chr1_1:26087169-26087188 Msa0015900:intron 35.0%
TTAAGATGCATGAGTTGCTA+GGG - chr1_1:26087170-26087189 Msa0015900:intron 35.0%
GAAAATTACATGCGAATGGA+AGG - chr1_1:26087321-26087340 Msa0015900:intron 35.0%
GGTAATTACAGATCTCTAGT+AGG - chr1_1:26087342-26087361 Msa0015900:intron 35.0%
AAGCTGTAAACTTTGTTCAG+TGG - chr1_1:26087371-26087390 Msa0015900:intron 35.0%
! GAGATTCGAATTTTGCTTCT+TGG + chr1_1:26087565-26087584 None:intergenic 35.0%
ATTTCATTGTCTGTTCTTCC+AGG + chr1_1:26087641-26087660 None:intergenic 35.0%
AAATGCCAATTCCAACTCAA+TGG - chr1_1:26087775-26087794 Msa0015900:intron 35.0%
TTGTCACAAAAGAGTCTTCA+GGG + chr1_1:26087883-26087902 None:intergenic 35.0%
ATTGTCACAAAAGAGTCTTC+AGG + chr1_1:26087884-26087903 None:intergenic 35.0%
GAAACTGTCATAGGATTTGA+TGG + chr1_1:26087971-26087990 None:intergenic 35.0%
! CGTCATTATCAAAAGGGTTT+TGG + chr1_1:26088045-26088064 None:intergenic 35.0%
!!! AACCCTTTTGATAATGACGA+TGG - chr1_1:26088046-26088065 Msa0015900:intron 35.0%
TGCCATCGTCATTATCAAAA+GGG + chr1_1:26088051-26088070 None:intergenic 35.0%
ATGCCATCGTCATTATCAAA+AGG + chr1_1:26088052-26088071 None:intergenic 35.0%
!!! TTTTGATAATGACGATGGCA+TGG - chr1_1:26088051-26088070 Msa0015900:intron 35.0%
GCTCCATGTTGTGAAAAGAA+AGG - chr1_1:26086670-26086689 Msa0015900:CDS 40.0%
AAGGATTGAAGAAAGGTCCT+TGG - chr1_1:26086689-26086708 Msa0015900:CDS 40.0%
! TCATCTTCATCTAAGGTCCA+AGG + chr1_1:26086709-26086728 None:intergenic 40.0%
! GTTTGTTGATGTAGGATGTG+AGG + chr1_1:26086735-26086754 None:intergenic 40.0%
ACCAAACAAGCTCGTTTAGT+TGG - chr1_1:26086874-26086893 Msa0015900:CDS 40.0%
! ACCAACTAAACGAGCTTGTT+TGG + chr1_1:26086878-26086897 None:intergenic 40.0%
GCTTCTCTTGTCAATTATGC+AGG - chr1_1:26087046-26087065 Msa0015900:CDS 40.0%
GGAAGAGTTGTAGATTGAGA+TGG - chr1_1:26087083-26087102 Msa0015900:CDS 40.0%
TTCTTTGCACTCCTTATGCA+TGG - chr1_1:26087396-26087415 Msa0015900:intron 40.0%
ACAGTGAAACTCCATGCATA+AGG + chr1_1:26087410-26087429 None:intergenic 40.0%
GCAATAGCAGCAAAATTACC+TGG - chr1_1:26087620-26087639 Msa0015900:CDS 40.0%
!! AGCTTCCATTGAGTTGGAAT+TGG + chr1_1:26087783-26087802 None:intergenic 40.0%
TGATGTAGCTTCCATTGAGT+TGG + chr1_1:26087789-26087808 None:intergenic 40.0%
! TGTCATAGGATTTGATGGCA+TGG + chr1_1:26087966-26087985 None:intergenic 40.0%
! ATGACGATGGCATGGATTTT+TGG - chr1_1:26088059-26088078 Msa0015900:intron 40.0%
GCTCCATGTTGTGAAAAGAA+AGG - chr1_1:26086670-26086689 Msa0015900:CDS 40.0%
AAGGATTGAAGAAAGGTCCT+TGG - chr1_1:26086689-26086708 Msa0015900:CDS 40.0%
! TCATCTTCATCTAAGGTCCA+AGG + chr1_1:26086709-26086728 None:intergenic 40.0%
! GTTTGTTGATGTAGGATGTG+AGG + chr1_1:26086735-26086754 None:intergenic 40.0%
ACCAAACAAGCTCGTTTAGT+TGG - chr1_1:26086874-26086893 Msa0015900:CDS 40.0%
! ACCAACTAAACGAGCTTGTT+TGG + chr1_1:26086878-26086897 None:intergenic 40.0%
GCTTCTCTTGTCAATTATGC+AGG - chr1_1:26087046-26087065 Msa0015900:CDS 40.0%
GGAAGAGTTGTAGATTGAGA+TGG - chr1_1:26087083-26087102 Msa0015900:CDS 40.0%
TTCTTTGCACTCCTTATGCA+TGG - chr1_1:26087396-26087415 Msa0015900:intron 40.0%
ACAGTGAAACTCCATGCATA+AGG + chr1_1:26087410-26087429 None:intergenic 40.0%
GCAATAGCAGCAAAATTACC+TGG - chr1_1:26087620-26087639 Msa0015900:CDS 40.0%
!! AGCTTCCATTGAGTTGGAAT+TGG + chr1_1:26087783-26087802 None:intergenic 40.0%
TGATGTAGCTTCCATTGAGT+TGG + chr1_1:26087789-26087808 None:intergenic 40.0%
! TGTCATAGGATTTGATGGCA+TGG + chr1_1:26087966-26087985 None:intergenic 40.0%
! ATGACGATGGCATGGATTTT+TGG - chr1_1:26088059-26088078 Msa0015900:intron 40.0%
! CATAGGATTTGATGGCATGG+TGG + chr1_1:26087963-26087982 None:intergenic 45.0%
! CATAGGATTTGATGGCATGG+TGG + chr1_1:26087963-26087982 None:intergenic 45.0%
TGCATGAGTTGCTAGGGAAC+AGG - chr1_1:26087176-26087195 Msa0015900:intron 50.0%
TGCATGAGTTGCTAGGGAAC+AGG - chr1_1:26087176-26087195 Msa0015900:intron 50.0%
CGTGCTCTCCCAAAACATGC+CGG - chr1_1:26086772-26086791 Msa0015900:CDS 55.0%
CGTGCTCTCCCAAAACATGC+CGG - chr1_1:26086772-26086791 Msa0015900:CDS 55.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 26086661 26088132 26086661 ID=Msa0015900;Name=Msa0015900
chr1_1 mRNA 26086661 26088132 26086661 ID=Msa0015900-mRNA-1;Parent=Msa0015900;Name=Msa0015900-mRNA-1;_AED=0.35;_eAED=0.35;_QI=0|0|0|1|1|1|3|0|230
chr1_1 exon 26088090 26088132 26088090 ID=Msa0015900-mRNA-1:exon:8913;Parent=Msa0015900-mRNA-1
chr1_1 exon 26087596 26087725 26087596 ID=Msa0015900-mRNA-1:exon:8912;Parent=Msa0015900-mRNA-1
chr1_1 exon 26086661 26087180 26086661 ID=Msa0015900-mRNA-1:exon:8911;Parent=Msa0015900-mRNA-1
chr1_1 CDS 26088090 26088132 26088090 ID=Msa0015900-mRNA-1:cds;Parent=Msa0015900-mRNA-1
chr1_1 CDS 26087596 26087725 26087596 ID=Msa0015900-mRNA-1:cds;Parent=Msa0015900-mRNA-1
chr1_1 CDS 26086661 26087180 26086661 ID=Msa0015900-mRNA-1:cds;Parent=Msa0015900-mRNA-1
Gene Sequence

>Msa0015900

ATGGTTAGAGCTCCATGTTGTGAAAAGAAAGGATTGAAGAAAGGTTTATTGAGATGTGGGAAGAGTTGTAGATTGAGATGGATTAATTATTTAAGACCTGATATTAAGAGAGGAAATTTTACAAATGAAGAAGAGGAAACTATCATTAAGATGCATGAGTTGCTAGGGAACAGATGGTCAGCAATAGCAGCAAAATTACCTGGAAGAACAGACAATGAAATAAAAAATGTATGGCACACTCACTTGAAGAAAAGACTACTGAATACCAAAAATAACCAACCTCATTCAAATACCAAAAAAAGAGTGTCAAAACAAAAAATCAAAAGATATGATTCAAATGCCAATTCCAACTCAATGGAAGCTACATCATCAAATTGCACTTTTTCTAGTAATTTTTCATCACAAGGAAGAAATGTTGACAACATCATCAATTGTGAAGACCCTGAAGACTCTTTTGTGACAATGCCTGAAATTGATGAAAGCTTTTGGTCAGAGAAAATAAATGATGACGAAATTAGCTCCACCATGCCATCAAATCCTATGACAGTTTCAAATGAATTACCAGATCAACAATATATTTTTAATAATTCAGTAGAAAATTTCCAAAACCCTTTTGATAATGACGATGGCATGGATTTTTGGTATAACGTGTTCATCAAATCAGGAGAATCAACAGAATTGCCAGAGTTCTAA
Protein sequence

>Msa0015900

MVRAPCCEKKGLKKGLLRCGKSCRLRWINYLRPDIKRGNFTNEEEETIIKMHELLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKRLLNTKNNQPHSNTKKRVSKQKIKRYDSNANSNSMEATSSNCTFSSNFSSQGRNVDNIINCEDPEDSFVTMPEIDESFWSEKINDDEISSTMPSNPMTVSNELPDQQYIFNNSVENFQNPFDNDDGMDFWYNVFIKSGESTELPEF*