Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0016170 | RHN78227.1 | 72.727 | 308 | 20 | 3 | 1 | 244 | 1 | 308 | 1.18e-133 | 391 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0016170 | sp|Q84R27|Y3896_ARATH | 34.653 | 101 | 65 | 1 | 11 | 111 | 30 | 129 | 6.22e-14 | 71.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0016170 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0016170 | MtrunA17_Chr1g0163221 | 72.727 | 308 | 20 | 3 | 1 | 244 | 1 | 308 | 1.08e-137 | 391 |
| Msa0016170 | MtrunA17_Chr4g0067431 | 70.323 | 155 | 39 | 2 | 1 | 148 | 1 | 155 | 1.54e-70 | 219 |
| Msa0016170 | MtrunA17_Chr4g0067431 | 64.516 | 93 | 29 | 3 | 150 | 239 | 233 | 324 | 3.39e-31 | 117 |
| Msa0016170 | MtrunA17_Chr6g0467351 | 63.399 | 153 | 46 | 2 | 1 | 149 | 1 | 147 | 4.50e-64 | 199 |
| Msa0016170 | MtrunA17_Chr1g0163061 | 65.278 | 144 | 43 | 2 | 1 | 137 | 1 | 144 | 3.14e-57 | 183 |
| Msa0016170 | MtrunA17_Chr6g0467361 | 65.556 | 90 | 27 | 3 | 148 | 234 | 6 | 94 | 3.25e-31 | 110 |
| Msa0016170 | MtrunA17_Chr1g0163131 | 35.057 | 174 | 91 | 6 | 5 | 165 | 12 | 176 | 3.45e-23 | 95.5 |
| Msa0016170 | MtrunA17_Chr3g0131891 | 28.819 | 288 | 133 | 8 | 9 | 226 | 17 | 302 | 1.16e-22 | 94.4 |
| Msa0016170 | MtrunA17_Chr3g0103181 | 27.007 | 274 | 140 | 11 | 9 | 226 | 10 | 279 | 7.66e-22 | 91.3 |
| Msa0016170 | MtrunA17_Chr7g0233571 | 39.130 | 115 | 69 | 1 | 9 | 123 | 8 | 121 | 4.45e-21 | 88.2 |
| Msa0016170 | MtrunA17_Chr3g0103151 | 34.667 | 150 | 86 | 5 | 9 | 149 | 10 | 156 | 5.92e-21 | 86.3 |
| Msa0016170 | MtrunA17_Chr3g0077411 | 27.572 | 243 | 145 | 7 | 2 | 224 | 16 | 247 | 1.74e-20 | 89.7 |
| Msa0016170 | MtrunA17_Chr3g0077411 | 25.911 | 247 | 137 | 9 | 9 | 212 | 260 | 503 | 2.74e-13 | 68.9 |
| Msa0016170 | MtrunA17_Chr1g0163101 | 34.043 | 141 | 78 | 4 | 6 | 135 | 12 | 148 | 1.80e-20 | 85.5 |
| Msa0016170 | MtrunA17_Chr1g0163261 | 27.402 | 281 | 130 | 10 | 11 | 225 | 9 | 281 | 3.09e-20 | 87.4 |
| Msa0016170 | MtrunA17_Chr1g0171611 | 27.600 | 250 | 132 | 8 | 11 | 214 | 9 | 255 | 7.18e-20 | 86.3 |
| Msa0016170 | MtrunA17_Chr5g0419201 | 40.000 | 100 | 59 | 1 | 11 | 110 | 16 | 114 | 1.59e-19 | 83.2 |
| Msa0016170 | MtrunA17_Chr1g0163231 | 29.008 | 262 | 125 | 11 | 11 | 214 | 9 | 267 | 7.70e-19 | 83.6 |
| Msa0016170 | MtrunA17_Chr1g0163121 | 34.043 | 141 | 79 | 4 | 25 | 155 | 9 | 145 | 9.44e-19 | 80.1 |
| Msa0016170 | MtrunA17_Chr3g0103191 | 34.188 | 117 | 74 | 2 | 9 | 125 | 10 | 123 | 2.41e-18 | 81.3 |
| Msa0016170 | MtrunA17_Chr6g0476181 | 41.026 | 117 | 61 | 5 | 27 | 140 | 2 | 113 | 4.99e-18 | 78.6 |
| Msa0016170 | MtrunA17_Chr1g0163081 | 34.677 | 124 | 67 | 4 | 27 | 140 | 6 | 125 | 6.01e-17 | 75.1 |
| Msa0016170 | MtrunA17_Chr3g0077451 | 27.948 | 229 | 133 | 9 | 25 | 226 | 10 | 233 | 1.72e-16 | 76.3 |
| Msa0016170 | MtrunA17_Chr7g0233521 | 26.908 | 249 | 118 | 7 | 27 | 212 | 2 | 249 | 2.21e-16 | 76.6 |
| Msa0016170 | MtrunA17_Chr1g0163251 | 39.806 | 103 | 59 | 2 | 20 | 122 | 14 | 113 | 2.28e-16 | 77.4 |
| Msa0016170 | MtrunA17_Chr3g0103171 | 26.718 | 262 | 128 | 11 | 27 | 226 | 6 | 265 | 4.94e-16 | 75.5 |
| Msa0016170 | MtrunA17_Chr7g0233531 | 26.908 | 249 | 118 | 6 | 27 | 212 | 2 | 249 | 9.19e-16 | 74.7 |
| Msa0016170 | MtrunA17_Chr1g0163191 | 40.196 | 102 | 58 | 2 | 20 | 121 | 14 | 112 | 9.51e-16 | 72.4 |
| Msa0016170 | MtrunA17_Chr1g0163181 | 36.975 | 119 | 63 | 4 | 15 | 125 | 9 | 123 | 1.28e-15 | 75.5 |
| Msa0016170 | MtrunA17_Chr3g0077461 | 26.840 | 231 | 151 | 5 | 10 | 223 | 236 | 465 | 3.33e-15 | 74.3 |
| Msa0016170 | MtrunA17_Chr3g0077461 | 28.646 | 192 | 107 | 7 | 27 | 202 | 23 | 200 | 9.87e-15 | 73.2 |
| Msa0016170 | MtrunA17_Chr7g0233561 | 31.884 | 138 | 91 | 2 | 9 | 144 | 16 | 152 | 4.08e-15 | 73.6 |
| Msa0016170 | MtrunA17_Chr7g0233541 | 25.940 | 266 | 116 | 8 | 27 | 212 | 2 | 266 | 5.49e-15 | 72.8 |
| Msa0016170 | MtrunA17_Chr1g0162161 | 42.391 | 92 | 49 | 3 | 27 | 118 | 4 | 91 | 6.38e-15 | 70.1 |
| Msa0016170 | MtrunA17_Chr1g0163241 | 34.234 | 111 | 70 | 2 | 27 | 137 | 23 | 130 | 6.94e-15 | 70.1 |
| Msa0016170 | MtrunA17_Chr5g0429931 | 25.751 | 233 | 138 | 7 | 27 | 226 | 11 | 241 | 1.00e-14 | 71.2 |
| Msa0016170 | MtrunA17_Chr8g0390841 | 31.373 | 102 | 69 | 1 | 9 | 110 | 37 | 137 | 3.70e-14 | 71.2 |
| Msa0016170 | MtrunA17_Chr1g0163071 | 29.448 | 163 | 99 | 5 | 27 | 180 | 2 | 157 | 4.18e-14 | 70.5 |
| Msa0016170 | MtrunA17_Chr1g0163201 | 37.895 | 95 | 56 | 2 | 27 | 121 | 19 | 110 | 1.19e-13 | 69.7 |
| Msa0016170 | MtrunA17_Chr3g0077431 | 28.877 | 187 | 108 | 7 | 64 | 226 | 9 | 194 | 8.95e-13 | 65.1 |
| Msa0016170 | MtrunA17_Chr1g0163141 | 32.000 | 125 | 72 | 3 | 25 | 140 | 9 | 129 | 1.41e-12 | 64.3 |
| Msa0016170 | MtrunA17_Chr4g0009491 | 27.723 | 202 | 114 | 7 | 25 | 205 | 11 | 201 | 5.49e-12 | 64.7 |
| Msa0016170 | MtrunA17_Chr3g0077361 | 26.695 | 236 | 156 | 5 | 3 | 224 | 32 | 264 | 6.82e-12 | 64.7 |
| Msa0016170 | MtrunA17_Chr3g0077421 | 25.287 | 174 | 105 | 5 | 64 | 212 | 9 | 182 | 3.73e-11 | 60.8 |
| Msa0016170 | MtrunA17_Chr3g0077441 | 25.287 | 174 | 105 | 5 | 64 | 212 | 9 | 182 | 3.73e-11 | 60.8 |
| Msa0016170 | MtrunA17_Chr1g0163161 | 33.607 | 122 | 66 | 4 | 39 | 149 | 1 | 118 | 7.87e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0016170 | AT3G18960.2 | 34.653 | 101 | 65 | 1 | 11 | 111 | 30 | 129 | 6.26e-15 | 71.2 |
| Msa0016170 | AT3G18960.1 | 34.653 | 101 | 65 | 1 | 11 | 111 | 30 | 129 | 6.32e-15 | 71.6 |
| Msa0016170 | AT1G49475.1 | 35.135 | 111 | 70 | 2 | 11 | 121 | 34 | 142 | 3.82e-14 | 69.3 |
| Msa0016170 | AT4G01580.1 | 32.673 | 101 | 67 | 1 | 11 | 111 | 30 | 129 | 1.21e-13 | 67.8 |
| Msa0016170 | AT3G18960.3 | 35.294 | 85 | 54 | 1 | 27 | 111 | 9 | 92 | 6.23e-11 | 60.1 |
Find 31 sgRNAs with CRISPR-Local
Find 284 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGGAAACCTTAGAGTAAT+TGG | 0.167691 | 1_1:-26910856 | None:intergenic |
| ATTTATCTTTGTCAACAAAA+AGG | 0.196489 | 1_1:-26912363 | None:intergenic |
| GAAGAGAATAATTTGAAATT+TGG | 0.198679 | 1_1:+26912448 | Msa0016170:CDS |
| TATAATTTACCTTCAAAATA+AGG | 0.255936 | 1_1:-26912559 | None:intergenic |
| TTCTTACAAACTTTCATAGA+TGG | 0.310675 | 1_1:-26911165 | None:intergenic |
| TAACAAACCCAATTACTCTA+AGG | 0.340216 | 1_1:+26910848 | Msa0016170:CDS |
| GTCTTTAATGTGATTGTATT+CGG | 0.340889 | 1_1:+26911015 | Msa0016170:CDS |
| ATTTCAAATTATTCTCTTCA+CGG | 0.368199 | 1_1:-26912444 | None:intergenic |
| GAGAAAATAACAACTTGAAA+TGG | 0.395512 | 1_1:-26912514 | None:intergenic |
| TTTCTCTTTGGAAAAGGACT+TGG | 0.399841 | 1_1:+26912531 | Msa0016170:CDS |
| TGTGTCTTAACAAATTCATT+TGG | 0.404885 | 1_1:-26912307 | None:intergenic |
| CTTCCCTAGTTTCTCTTGAC+GGG | 0.422598 | 1_1:-26911062 | None:intergenic |
| TGAATTTGTTAAGACACATA+TGG | 0.433535 | 1_1:+26912312 | Msa0016170:CDS |
| TCTTCCCTAGTTTCTCTTGA+CGG | 0.433773 | 1_1:-26911063 | None:intergenic |
| TTGGAAACCTTAGAGTAATT+GGG | 0.442652 | 1_1:-26910855 | None:intergenic |
| TGAGAATCCTTCGTCATCAC+GGG | 0.459175 | 1_1:+26911119 | Msa0016170:CDS |
| TACTCTAAGGTTTCCAAACA+TGG | 0.467994 | 1_1:+26910861 | Msa0016170:CDS |
| TTGAGAATCCTTCGTCATCA+CGG | 0.526374 | 1_1:+26911118 | Msa0016170:CDS |
| AATACCCGTCAAGAGAAACT+AGG | 0.533719 | 1_1:+26911058 | Msa0016170:CDS |
| TTTGTGAAAAGGTATTGGAA+AGG | 0.553882 | 1_1:+26910823 | Msa0016170:CDS |
| AATCTGCACTAACTTGTGGT+TGG | 0.573287 | 1_1:+26912413 | Msa0016170:CDS |
| ATACCCGTCAAGAGAAACTA+GGG | 0.582374 | 1_1:+26911059 | Msa0016170:CDS |
| TAAGACACATATGGACATGA+TGG | 0.584937 | 1_1:+26912321 | Msa0016170:CDS |
| GTGATTGTATTCGGTAGATG+TGG | 0.588390 | 1_1:+26911024 | Msa0016170:CDS |
| AAACAATCTGCACTAACTTG+TGG | 0.589005 | 1_1:+26912409 | Msa0016170:CDS |
| ATGTCTTCTCAAGAGAGTAA+TGG | 0.609709 | 1_1:+26910392 | Msa0016170:CDS |
| GAATACAATCACATTAAAGA+CGG | 0.610018 | 1_1:-26911013 | None:intergenic |
| ATTACTCTCTTGAGAAGACA+TGG | 0.618980 | 1_1:-26910390 | None:intergenic |
| ACACATATGGACATGATGGA+AGG | 0.627742 | 1_1:+26912325 | Msa0016170:CDS |
| TCTAAGGTTTCCAAACATGG+TGG | 0.644869 | 1_1:+26910864 | Msa0016170:CDS |
| GAGAATCCTTCGTCATCACG+GGG | 0.717191 | 1_1:+26911120 | Msa0016170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTGCTACTAATTTTTTT+TGG | + | chr1_1:26911297-26911316 | Msa0016170:intron | 15.0% |
| !! | TATAATTTACCTTCAAAATA+AGG | - | chr1_1:26912562-26912581 | None:intergenic | 15.0% |
| !!! | TTTTTGCTACTAATTTTTTT+TGG | + | chr1_1:26911297-26911316 | Msa0016170:intron | 15.0% |
| !! | TATAATTTACCTTCAAAATA+AGG | - | chr1_1:26912562-26912581 | None:intergenic | 15.0% |
| !! | TTACATATTGTGAAAAATCA+AGG | - | chr1_1:26910493-26910512 | None:intergenic | 20.0% |
| !! | TAAATATGCATTGCAAAATT+TGG | + | chr1_1:26910510-26910529 | Msa0016170:intron | 20.0% |
| !!! | TTTGAATGAATCACAATTTT+TGG | + | chr1_1:26910969-26910988 | Msa0016170:CDS | 20.0% |
| !!! | TGAATTCTTATTTTTTTAGC+AGG | + | chr1_1:26911320-26911339 | Msa0016170:intron | 20.0% |
| !!! | TTTTTTTGAAGAAGCTAAAA+TGG | + | chr1_1:26911520-26911539 | Msa0016170:intron | 20.0% |
| !! | TGGTTATTCACATATATTAT+CGG | - | chr1_1:26912088-26912107 | None:intergenic | 20.0% |
| !!! | CTTTAAAAATACCTACATAA+TGG | + | chr1_1:26912155-26912174 | Msa0016170:intron | 20.0% |
| !! | AACTATATGTGTGTATTTAT+AGG | + | chr1_1:26912279-26912298 | Msa0016170:intron | 20.0% |
| !! | TTTATCTTTGTCAACAAAAA+GGG | - | chr1_1:26912365-26912384 | None:intergenic | 20.0% |
| !! | ATTTATCTTTGTCAACAAAA+AGG | - | chr1_1:26912366-26912385 | None:intergenic | 20.0% |
| !!! | TTTTTGTTGACAAAGATAAA+TGG | + | chr1_1:26912365-26912384 | Msa0016170:CDS | 20.0% |
| !! | ATTTCAAATTATTCTCTTCA+CGG | - | chr1_1:26912447-26912466 | None:intergenic | 20.0% |
| !!! | GAAGAGAATAATTTGAAATT+TGG | + | chr1_1:26912448-26912467 | Msa0016170:CDS | 20.0% |
| !! | TTACATATTGTGAAAAATCA+AGG | - | chr1_1:26910493-26910512 | None:intergenic | 20.0% |
| !! | TAAATATGCATTGCAAAATT+TGG | + | chr1_1:26910510-26910529 | Msa0016170:intron | 20.0% |
| !!! | TTTGAATGAATCACAATTTT+TGG | + | chr1_1:26910969-26910988 | Msa0016170:CDS | 20.0% |
| !!! | TGAATTCTTATTTTTTTAGC+AGG | + | chr1_1:26911320-26911339 | Msa0016170:intron | 20.0% |
| !!! | TTTTTTTGAAGAAGCTAAAA+TGG | + | chr1_1:26911520-26911539 | Msa0016170:intron | 20.0% |
| !! | TGGTTATTCACATATATTAT+CGG | - | chr1_1:26912088-26912107 | None:intergenic | 20.0% |
| !!! | CTTTAAAAATACCTACATAA+TGG | + | chr1_1:26912155-26912174 | Msa0016170:intron | 20.0% |
| !! | AACTATATGTGTGTATTTAT+AGG | + | chr1_1:26912279-26912298 | Msa0016170:intron | 20.0% |
| !! | TTTATCTTTGTCAACAAAAA+GGG | - | chr1_1:26912365-26912384 | None:intergenic | 20.0% |
| !! | ATTTATCTTTGTCAACAAAA+AGG | - | chr1_1:26912366-26912385 | None:intergenic | 20.0% |
| !!! | TTTTTGTTGACAAAGATAAA+TGG | + | chr1_1:26912365-26912384 | Msa0016170:CDS | 20.0% |
| !! | ATTTCAAATTATTCTCTTCA+CGG | - | chr1_1:26912447-26912466 | None:intergenic | 20.0% |
| !!! | GAAGAGAATAATTTGAAATT+TGG | + | chr1_1:26912448-26912467 | Msa0016170:CDS | 20.0% |
| ! | AATGATTGTTCGAATATCAA+CGG | + | chr1_1:26910653-26910672 | Msa0016170:intron | 25.0% |
| !! | TACCTTTTCACAAAACTTAT+GGG | - | chr1_1:26910817-26910836 | None:intergenic | 25.0% |
| !! | ATACCTTTTCACAAAACTTA+TGG | - | chr1_1:26910818-26910837 | None:intergenic | 25.0% |
| !!! | TAAGTTTTGTGAAAAGGTAT+TGG | + | chr1_1:26910818-26910837 | Msa0016170:CDS | 25.0% |
| !! | TATGAAGTTATGTTTTGCAA+TGG | + | chr1_1:26910919-26910938 | Msa0016170:CDS | 25.0% |
| ! | GAATACAATCACATTAAAGA+CGG | - | chr1_1:26911016-26911035 | None:intergenic | 25.0% |
| ! | GTCTTTAATGTGATTGTATT+CGG | + | chr1_1:26911015-26911034 | Msa0016170:CDS | 25.0% |
| ! | TTCTTACAAACTTTCATAGA+TGG | - | chr1_1:26911168-26911187 | None:intergenic | 25.0% |
| ! | AAGTAGTTGTGATGATATTA+AGG | + | chr1_1:26911343-26911362 | Msa0016170:intron | 25.0% |
| ! | AACATAGCAAAATAGTACAA+AGG | + | chr1_1:26911602-26911621 | Msa0016170:intron | 25.0% |
| ! | ACATATATTATCGGATTTCA+TGG | - | chr1_1:26912079-26912098 | None:intergenic | 25.0% |
| ! | CCAATTATGGTATACTAATT+TGG | - | chr1_1:26912108-26912127 | None:intergenic | 25.0% |
| ! | CCAAATTAGTATACCATAAT+TGG | + | chr1_1:26912105-26912124 | Msa0016170:intron | 25.0% |
| ! | AATATAGCAAAGTCCAATTA+TGG | - | chr1_1:26912121-26912140 | None:intergenic | 25.0% |
| ! | TGTGTCTTAACAAATTCATT+TGG | - | chr1_1:26912310-26912329 | None:intergenic | 25.0% |
| !!! | TGAATTTGTTAAGACACATA+TGG | + | chr1_1:26912312-26912331 | Msa0016170:CDS | 25.0% |
| ! | GAGAAAATAACAACTTGAAA+TGG | - | chr1_1:26912517-26912536 | None:intergenic | 25.0% |
| !!! | TCAAGTTGTTATTTTCTCTT+TGG | + | chr1_1:26912519-26912538 | Msa0016170:CDS | 25.0% |
| !!! | TGTTATTTTCTCTTTGGAAA+AGG | + | chr1_1:26912525-26912544 | Msa0016170:CDS | 25.0% |
| ! | AATGATTGTTCGAATATCAA+CGG | + | chr1_1:26910653-26910672 | Msa0016170:intron | 25.0% |
| !! | TACCTTTTCACAAAACTTAT+GGG | - | chr1_1:26910817-26910836 | None:intergenic | 25.0% |
| !! | ATACCTTTTCACAAAACTTA+TGG | - | chr1_1:26910818-26910837 | None:intergenic | 25.0% |
| !!! | TAAGTTTTGTGAAAAGGTAT+TGG | + | chr1_1:26910818-26910837 | Msa0016170:CDS | 25.0% |
| !! | TATGAAGTTATGTTTTGCAA+TGG | + | chr1_1:26910919-26910938 | Msa0016170:CDS | 25.0% |
| ! | GAATACAATCACATTAAAGA+CGG | - | chr1_1:26911016-26911035 | None:intergenic | 25.0% |
| ! | GTCTTTAATGTGATTGTATT+CGG | + | chr1_1:26911015-26911034 | Msa0016170:CDS | 25.0% |
| ! | TTCTTACAAACTTTCATAGA+TGG | - | chr1_1:26911168-26911187 | None:intergenic | 25.0% |
| ! | AAGTAGTTGTGATGATATTA+AGG | + | chr1_1:26911343-26911362 | Msa0016170:intron | 25.0% |
| ! | AACATAGCAAAATAGTACAA+AGG | + | chr1_1:26911602-26911621 | Msa0016170:intron | 25.0% |
| ! | ACATATATTATCGGATTTCA+TGG | - | chr1_1:26912079-26912098 | None:intergenic | 25.0% |
| ! | CCAATTATGGTATACTAATT+TGG | - | chr1_1:26912108-26912127 | None:intergenic | 25.0% |
| ! | CCAAATTAGTATACCATAAT+TGG | + | chr1_1:26912105-26912124 | Msa0016170:intron | 25.0% |
| ! | AATATAGCAAAGTCCAATTA+TGG | - | chr1_1:26912121-26912140 | None:intergenic | 25.0% |
| ! | TGTGTCTTAACAAATTCATT+TGG | - | chr1_1:26912310-26912329 | None:intergenic | 25.0% |
| !!! | TGAATTTGTTAAGACACATA+TGG | + | chr1_1:26912312-26912331 | Msa0016170:CDS | 25.0% |
| ! | GAGAAAATAACAACTTGAAA+TGG | - | chr1_1:26912517-26912536 | None:intergenic | 25.0% |
| !!! | TCAAGTTGTTATTTTCTCTT+TGG | + | chr1_1:26912519-26912538 | Msa0016170:CDS | 25.0% |
| !!! | TGTTATTTTCTCTTTGGAAA+AGG | + | chr1_1:26912525-26912544 | Msa0016170:CDS | 25.0% |
| !!! | TAATGGTGTCCACTTTTTTA+AGG | + | chr1_1:26910409-26910428 | Msa0016170:CDS | 30.0% |
| GACGAATAACCTTAAAAAAG+TGG | - | chr1_1:26910421-26910440 | None:intergenic | 30.0% | |
| ! | TACCAGTTTTTCTTCTTGAA+GGG | - | chr1_1:26910450-26910469 | None:intergenic | 30.0% |
| ! | TTACCAGTTTTTCTTCTTGA+AGG | - | chr1_1:26910451-26910470 | None:intergenic | 30.0% |
| !! | TTTGTGAAAAGGTATTGGAA+AGG | + | chr1_1:26910823-26910842 | Msa0016170:CDS | 30.0% |
| TAACAAACCCAATTACTCTA+AGG | + | chr1_1:26910848-26910867 | Msa0016170:CDS | 30.0% | |
| TTGGAAACCTTAGAGTAATT+GGG | - | chr1_1:26910858-26910877 | None:intergenic | 30.0% | |
| TTTGGAAACCTTAGAGTAAT+TGG | - | chr1_1:26910859-26910878 | None:intergenic | 30.0% | |
| !!! | TGGTGGAAAAGAAAGTTTTT+TGG | + | chr1_1:26910881-26910900 | Msa0016170:CDS | 30.0% |
| !!! | GGTGGAAAAGAAAGTTTTTT+GGG | + | chr1_1:26910882-26910901 | Msa0016170:CDS | 30.0% |
| ! | AAGTTATGTTTTGCAATGGT+TGG | + | chr1_1:26910923-26910942 | Msa0016170:CDS | 30.0% |
| !!! | CGAATTTTTTCTTCACTTTC+TGG | - | chr1_1:26911388-26911407 | None:intergenic | 30.0% |
| GAAAAAATTCGACTCTGATA+AGG | + | chr1_1:26911397-26911416 | Msa0016170:intron | 30.0% | |
| ! | CTCTATCAATGTATGACTTT+TGG | - | chr1_1:26911442-26911461 | None:intergenic | 30.0% |
| GTTAGAAAAACATAGGTGTT+TGG | - | chr1_1:26911650-26911669 | None:intergenic | 30.0% | |
| TGTGGATGTTAGAAAAACAT+AGG | - | chr1_1:26911657-26911676 | None:intergenic | 30.0% | |
| ! | GTTTTTATGAGTGTGTATGT+TGG | - | chr1_1:26911880-26911899 | None:intergenic | 30.0% |
| TATATTATCGGATTTCATGG+TGG | - | chr1_1:26912076-26912095 | None:intergenic | 30.0% | |
| !! | TGTGTTTTTGTGCTAAACAA+AGG | + | chr1_1:26912478-26912497 | Msa0016170:CDS | 30.0% |
| !!! | TTGGAAACTCCTTATTTTGA+AGG | + | chr1_1:26912550-26912569 | Msa0016170:CDS | 30.0% |
| !!! | TAATGGTGTCCACTTTTTTA+AGG | + | chr1_1:26910409-26910428 | Msa0016170:CDS | 30.0% |
| GACGAATAACCTTAAAAAAG+TGG | - | chr1_1:26910421-26910440 | None:intergenic | 30.0% | |
| ! | TACCAGTTTTTCTTCTTGAA+GGG | - | chr1_1:26910450-26910469 | None:intergenic | 30.0% |
| ! | TTACCAGTTTTTCTTCTTGA+AGG | - | chr1_1:26910451-26910470 | None:intergenic | 30.0% |
| !! | TTTGTGAAAAGGTATTGGAA+AGG | + | chr1_1:26910823-26910842 | Msa0016170:CDS | 30.0% |
| TAACAAACCCAATTACTCTA+AGG | + | chr1_1:26910848-26910867 | Msa0016170:CDS | 30.0% | |
| TTGGAAACCTTAGAGTAATT+GGG | - | chr1_1:26910858-26910877 | None:intergenic | 30.0% | |
| TTTGGAAACCTTAGAGTAAT+TGG | - | chr1_1:26910859-26910878 | None:intergenic | 30.0% | |
| !!! | TGGTGGAAAAGAAAGTTTTT+TGG | + | chr1_1:26910881-26910900 | Msa0016170:CDS | 30.0% |
| !!! | GGTGGAAAAGAAAGTTTTTT+GGG | + | chr1_1:26910882-26910901 | Msa0016170:CDS | 30.0% |
| ! | AAGTTATGTTTTGCAATGGT+TGG | + | chr1_1:26910923-26910942 | Msa0016170:CDS | 30.0% |
| !!! | CGAATTTTTTCTTCACTTTC+TGG | - | chr1_1:26911388-26911407 | None:intergenic | 30.0% |
| GAAAAAATTCGACTCTGATA+AGG | + | chr1_1:26911397-26911416 | Msa0016170:intron | 30.0% | |
| ! | CTCTATCAATGTATGACTTT+TGG | - | chr1_1:26911442-26911461 | None:intergenic | 30.0% |
| GTTAGAAAAACATAGGTGTT+TGG | - | chr1_1:26911650-26911669 | None:intergenic | 30.0% | |
| TGTGGATGTTAGAAAAACAT+AGG | - | chr1_1:26911657-26911676 | None:intergenic | 30.0% | |
| ! | GTTTTTATGAGTGTGTATGT+TGG | - | chr1_1:26911880-26911899 | None:intergenic | 30.0% |
| TATATTATCGGATTTCATGG+TGG | - | chr1_1:26912076-26912095 | None:intergenic | 30.0% | |
| !! | TGTGTTTTTGTGCTAAACAA+AGG | + | chr1_1:26912478-26912497 | Msa0016170:CDS | 30.0% |
| !!! | TTGGAAACTCCTTATTTTGA+AGG | + | chr1_1:26912550-26912569 | Msa0016170:CDS | 30.0% |
| ATGTCTTCTCAAGAGAGTAA+TGG | + | chr1_1:26910392-26910411 | Msa0016170:CDS | 35.0% | |
| TACCCTTCAAGAAGAAAAAC+TGG | + | chr1_1:26910445-26910464 | Msa0016170:CDS | 35.0% | |
| !! | TGCCCATAAGTTTTGTGAAA+AGG | + | chr1_1:26910812-26910831 | Msa0016170:CDS | 35.0% |
| !! | TACTCTAAGGTTTCCAAACA+TGG | + | chr1_1:26910861-26910880 | Msa0016170:CDS | 35.0% |
| ! | ACTTTCTTTTCCACCATGTT+TGG | - | chr1_1:26910877-26910896 | None:intergenic | 35.0% |
| ATACATTGATAGAGATCGCT+TGG | + | chr1_1:26911448-26911467 | Msa0016170:intron | 35.0% | |
| !!! | TATTTTAGCATTCCTTGTGC+TGG | - | chr1_1:26911574-26911593 | None:intergenic | 35.0% |
| AGCACAAGGAATGCTAAAAT+AGG | + | chr1_1:26911573-26911592 | Msa0016170:intron | 35.0% | |
| TGTTTATTGAGGTTGTGTGA+TGG | - | chr1_1:26912031-26912050 | None:intergenic | 35.0% | |
| TCAAGAATGGGTGTTTATTG+AGG | - | chr1_1:26912042-26912061 | None:intergenic | 35.0% | |
| CCAATCACAATCCATTATGT+AGG | - | chr1_1:26912169-26912188 | None:intergenic | 35.0% | |
| !! | CCTACATAATGGATTGTGAT+TGG | + | chr1_1:26912166-26912185 | Msa0016170:intron | 35.0% |
| TAAGACACATATGGACATGA+TGG | + | chr1_1:26912321-26912340 | Msa0016170:CDS | 35.0% | |
| AAACAATCTGCACTAACTTG+TGG | + | chr1_1:26912409-26912428 | Msa0016170:CDS | 35.0% | |
| ! | TTTCTCTTTGGAAAAGGACT+TGG | + | chr1_1:26912531-26912550 | Msa0016170:CDS | 35.0% |
| ATGTCTTCTCAAGAGAGTAA+TGG | + | chr1_1:26910392-26910411 | Msa0016170:CDS | 35.0% | |
| TACCCTTCAAGAAGAAAAAC+TGG | + | chr1_1:26910445-26910464 | Msa0016170:CDS | 35.0% | |
| !! | TGCCCATAAGTTTTGTGAAA+AGG | + | chr1_1:26910812-26910831 | Msa0016170:CDS | 35.0% |
| !! | TACTCTAAGGTTTCCAAACA+TGG | + | chr1_1:26910861-26910880 | Msa0016170:CDS | 35.0% |
| ! | ACTTTCTTTTCCACCATGTT+TGG | - | chr1_1:26910877-26910896 | None:intergenic | 35.0% |
| ATACATTGATAGAGATCGCT+TGG | + | chr1_1:26911448-26911467 | Msa0016170:intron | 35.0% | |
| !!! | TATTTTAGCATTCCTTGTGC+TGG | - | chr1_1:26911574-26911593 | None:intergenic | 35.0% |
| AGCACAAGGAATGCTAAAAT+AGG | + | chr1_1:26911573-26911592 | Msa0016170:intron | 35.0% | |
| TGTTTATTGAGGTTGTGTGA+TGG | - | chr1_1:26912031-26912050 | None:intergenic | 35.0% | |
| TCAAGAATGGGTGTTTATTG+AGG | - | chr1_1:26912042-26912061 | None:intergenic | 35.0% | |
| CCAATCACAATCCATTATGT+AGG | - | chr1_1:26912169-26912188 | None:intergenic | 35.0% | |
| !! | CCTACATAATGGATTGTGAT+TGG | + | chr1_1:26912166-26912185 | Msa0016170:intron | 35.0% |
| TAAGACACATATGGACATGA+TGG | + | chr1_1:26912321-26912340 | Msa0016170:CDS | 35.0% | |
| AAACAATCTGCACTAACTTG+TGG | + | chr1_1:26912409-26912428 | Msa0016170:CDS | 35.0% | |
| ! | TTTCTCTTTGGAAAAGGACT+TGG | + | chr1_1:26912531-26912550 | Msa0016170:CDS | 35.0% |
| ! | TCTAAGGTTTCCAAACATGG+TGG | + | chr1_1:26910864-26910883 | Msa0016170:CDS | 40.0% |
| GTGATTGTATTCGGTAGATG+TGG | + | chr1_1:26911024-26911043 | Msa0016170:CDS | 40.0% | |
| AATACCCGTCAAGAGAAACT+AGG | + | chr1_1:26911058-26911077 | Msa0016170:CDS | 40.0% | |
| ATACCCGTCAAGAGAAACTA+GGG | + | chr1_1:26911059-26911078 | Msa0016170:CDS | 40.0% | |
| TCTTCCCTAGTTTCTCTTGA+CGG | - | chr1_1:26911066-26911085 | None:intergenic | 40.0% | |
| TTGAGAATCCTTCGTCATCA+CGG | + | chr1_1:26911118-26911137 | Msa0016170:CDS | 40.0% | |
| AATGAATCCTAACCAGCACA+AGG | + | chr1_1:26911559-26911578 | Msa0016170:intron | 40.0% | |
| !!! | TGTTTGGTGTTTTTGTGTGG+TGG | - | chr1_1:26911634-26911653 | None:intergenic | 40.0% |
| !!! | AGGTGTTTGGTGTTTTTGTG+TGG | - | chr1_1:26911637-26911656 | None:intergenic | 40.0% |
| TGTGGTGGCAGATTTGAATT+GGG | - | chr1_1:26911799-26911818 | None:intergenic | 40.0% | |
| TTGTGGTGGCAGATTTGAAT+TGG | - | chr1_1:26911800-26911819 | None:intergenic | 40.0% | |
| TTTCGTGGTAGATTTCATGG+TGG | - | chr1_1:26911856-26911875 | None:intergenic | 40.0% | |
| ! | GGTTTTCGTGGTAGATTTCA+TGG | - | chr1_1:26911859-26911878 | None:intergenic | 40.0% |
| !!! | AGTGTGTATGTTGGTTTTCG+TGG | - | chr1_1:26911871-26911890 | None:intergenic | 40.0% |
| ! | GTTGCTGTGGTTGATTTCAA+GGG | - | chr1_1:26911937-26911956 | None:intergenic | 40.0% |
| ! | TGATTTTGTGTGGTTGTAGG+TGG | - | chr1_1:26911962-26911981 | None:intergenic | 40.0% |
| !!! | TGCTGATTTTGTGTGGTTGT+AGG | - | chr1_1:26911965-26911984 | None:intergenic | 40.0% |
| !!! | TAGTAGGTGCTGATTTTGTG+TGG | - | chr1_1:26911972-26911991 | None:intergenic | 40.0% |
| ! | ACACATATGGACATGATGGA+AGG | + | chr1_1:26912325-26912344 | Msa0016170:CDS | 40.0% |
| ! | AATCTGCACTAACTTGTGGT+TGG | + | chr1_1:26912413-26912432 | Msa0016170:CDS | 40.0% |
| ! | TCTAAGGTTTCCAAACATGG+TGG | + | chr1_1:26910864-26910883 | Msa0016170:CDS | 40.0% |
| GTGATTGTATTCGGTAGATG+TGG | + | chr1_1:26911024-26911043 | Msa0016170:CDS | 40.0% | |
| AATACCCGTCAAGAGAAACT+AGG | + | chr1_1:26911058-26911077 | Msa0016170:CDS | 40.0% | |
| ATACCCGTCAAGAGAAACTA+GGG | + | chr1_1:26911059-26911078 | Msa0016170:CDS | 40.0% | |
| TCTTCCCTAGTTTCTCTTGA+CGG | - | chr1_1:26911066-26911085 | None:intergenic | 40.0% | |
| TTGAGAATCCTTCGTCATCA+CGG | + | chr1_1:26911118-26911137 | Msa0016170:CDS | 40.0% | |
| AATGAATCCTAACCAGCACA+AGG | + | chr1_1:26911559-26911578 | Msa0016170:intron | 40.0% | |
| !!! | TGTTTGGTGTTTTTGTGTGG+TGG | - | chr1_1:26911634-26911653 | None:intergenic | 40.0% |
| !!! | AGGTGTTTGGTGTTTTTGTG+TGG | - | chr1_1:26911637-26911656 | None:intergenic | 40.0% |
| TGTGGTGGCAGATTTGAATT+GGG | - | chr1_1:26911799-26911818 | None:intergenic | 40.0% | |
| TTGTGGTGGCAGATTTGAAT+TGG | - | chr1_1:26911800-26911819 | None:intergenic | 40.0% | |
| TTTCGTGGTAGATTTCATGG+TGG | - | chr1_1:26911856-26911875 | None:intergenic | 40.0% | |
| ! | GGTTTTCGTGGTAGATTTCA+TGG | - | chr1_1:26911859-26911878 | None:intergenic | 40.0% |
| !!! | AGTGTGTATGTTGGTTTTCG+TGG | - | chr1_1:26911871-26911890 | None:intergenic | 40.0% |
| ! | GTTGCTGTGGTTGATTTCAA+GGG | - | chr1_1:26911937-26911956 | None:intergenic | 40.0% |
| ! | TGATTTTGTGTGGTTGTAGG+TGG | - | chr1_1:26911962-26911981 | None:intergenic | 40.0% |
| !!! | TGCTGATTTTGTGTGGTTGT+AGG | - | chr1_1:26911965-26911984 | None:intergenic | 40.0% |
| !!! | TAGTAGGTGCTGATTTTGTG+TGG | - | chr1_1:26911972-26911991 | None:intergenic | 40.0% |
| ! | ACACATATGGACATGATGGA+AGG | + | chr1_1:26912325-26912344 | Msa0016170:CDS | 40.0% |
| ! | AATCTGCACTAACTTGTGGT+TGG | + | chr1_1:26912413-26912432 | Msa0016170:CDS | 40.0% |
| CTTCCCTAGTTTCTCTTGAC+GGG | - | chr1_1:26911065-26911084 | None:intergenic | 45.0% | |
| TGAGAATCCTTCGTCATCAC+GGG | + | chr1_1:26911119-26911138 | Msa0016170:CDS | 45.0% | |
| !! | TTTTTACCCCGTGATGACGA+AGG | - | chr1_1:26911129-26911148 | None:intergenic | 45.0% |
| AAGCGTGAGCATGTGAACAA+TGG | + | chr1_1:26911222-26911241 | Msa0016170:intron | 45.0% | |
| GTGAGCATGTGAACAATGGT+TGG | + | chr1_1:26911226-26911245 | Msa0016170:intron | 45.0% | |
| !! | TAGCATTCCTTGTGCTGGTT+AGG | - | chr1_1:26911569-26911588 | None:intergenic | 45.0% |
| TCTTGGTATTGTAGCTGCGT+CGG | - | chr1_1:26911705-26911724 | None:intergenic | 45.0% | |
| !! | GTTTTGGGTATGGTGGTAAG+AGG | - | chr1_1:26911743-26911762 | None:intergenic | 45.0% |
| ! | TTGGTGGAGAGGCAAGTTTT+GGG | - | chr1_1:26911758-26911777 | None:intergenic | 45.0% |
| TTGAATTGGGGTGGAAGTGA+TGG | - | chr1_1:26911786-26911805 | None:intergenic | 45.0% | |
| GTGGTGGCAGATTTGAATTG+GGG | - | chr1_1:26911798-26911817 | None:intergenic | 45.0% | |
| GGTAGATTTCATGGTGGTTG+TGG | - | chr1_1:26911850-26911869 | None:intergenic | 45.0% | |
| ! | GGTTGATTTCAAGGGTCCAT+CGG | - | chr1_1:26911929-26911948 | None:intergenic | 45.0% |
| ! | GGTTGCTGTGGTTGATTTCA+AGG | - | chr1_1:26911938-26911957 | None:intergenic | 45.0% |
| ! | TTTTGTGTGGTTGTAGGTGG+TGG | - | chr1_1:26911959-26911978 | None:intergenic | 45.0% |
| TGAGGTTGTGTGATGGCTAT+GGG | - | chr1_1:26912024-26912043 | None:intergenic | 45.0% | |
| TTGAGGTTGTGTGATGGCTA+TGG | - | chr1_1:26912025-26912044 | None:intergenic | 45.0% | |
| GACTGGAGCTGATCAAGAAT+GGG | - | chr1_1:26912054-26912073 | None:intergenic | 45.0% | |
| !! | TATCGGATTTCATGGTGGAC+TGG | - | chr1_1:26912071-26912090 | None:intergenic | 45.0% |
| CTTCCCTAGTTTCTCTTGAC+GGG | - | chr1_1:26911065-26911084 | None:intergenic | 45.0% | |
| TGAGAATCCTTCGTCATCAC+GGG | + | chr1_1:26911119-26911138 | Msa0016170:CDS | 45.0% | |
| !! | TTTTTACCCCGTGATGACGA+AGG | - | chr1_1:26911129-26911148 | None:intergenic | 45.0% |
| AAGCGTGAGCATGTGAACAA+TGG | + | chr1_1:26911222-26911241 | Msa0016170:intron | 45.0% | |
| GTGAGCATGTGAACAATGGT+TGG | + | chr1_1:26911226-26911245 | Msa0016170:intron | 45.0% | |
| !! | TAGCATTCCTTGTGCTGGTT+AGG | - | chr1_1:26911569-26911588 | None:intergenic | 45.0% |
| TCTTGGTATTGTAGCTGCGT+CGG | - | chr1_1:26911705-26911724 | None:intergenic | 45.0% | |
| !! | GTTTTGGGTATGGTGGTAAG+AGG | - | chr1_1:26911743-26911762 | None:intergenic | 45.0% |
| ! | TTGGTGGAGAGGCAAGTTTT+GGG | - | chr1_1:26911758-26911777 | None:intergenic | 45.0% |
| TTGAATTGGGGTGGAAGTGA+TGG | - | chr1_1:26911786-26911805 | None:intergenic | 45.0% | |
| GTGGTGGCAGATTTGAATTG+GGG | - | chr1_1:26911798-26911817 | None:intergenic | 45.0% | |
| GGTAGATTTCATGGTGGTTG+TGG | - | chr1_1:26911850-26911869 | None:intergenic | 45.0% | |
| ! | GGTTGATTTCAAGGGTCCAT+CGG | - | chr1_1:26911929-26911948 | None:intergenic | 45.0% |
| ! | GGTTGCTGTGGTTGATTTCA+AGG | - | chr1_1:26911938-26911957 | None:intergenic | 45.0% |
| ! | TTTTGTGTGGTTGTAGGTGG+TGG | - | chr1_1:26911959-26911978 | None:intergenic | 45.0% |
| TGAGGTTGTGTGATGGCTAT+GGG | - | chr1_1:26912024-26912043 | None:intergenic | 45.0% | |
| TTGAGGTTGTGTGATGGCTA+TGG | - | chr1_1:26912025-26912044 | None:intergenic | 45.0% | |
| GACTGGAGCTGATCAAGAAT+GGG | - | chr1_1:26912054-26912073 | None:intergenic | 45.0% | |
| !! | TATCGGATTTCATGGTGGAC+TGG | - | chr1_1:26912071-26912090 | None:intergenic | 45.0% |
| GAGAATCCTTCGTCATCACG+GGG | + | chr1_1:26911120-26911139 | Msa0016170:CDS | 50.0% | |
| !! | CTTTGCAGGTGCTGAGTTTG+TGG | - | chr1_1:26911675-26911694 | None:intergenic | 50.0% |
| ATGGTGGTAAGAGGAGGTGA+TGG | - | chr1_1:26911734-26911753 | None:intergenic | 50.0% | |
| TTGGGTATGGTGGTAAGAGG+AGG | - | chr1_1:26911740-26911759 | None:intergenic | 50.0% | |
| !!! | GAGGCAAGTTTTGGGTATGG+TGG | - | chr1_1:26911750-26911769 | None:intergenic | 50.0% |
| !!! | GGAGAGGCAAGTTTTGGGTA+TGG | - | chr1_1:26911753-26911772 | None:intergenic | 50.0% |
| !! | GTTGGTGGAGAGGCAAGTTT+TGG | - | chr1_1:26911759-26911778 | None:intergenic | 50.0% |
| AATTGGGGTGGAAGTGATGG+TGG | - | chr1_1:26911783-26911802 | None:intergenic | 50.0% | |
| GTGGCAGATTTGAATTGGGG+TGG | - | chr1_1:26911795-26911814 | None:intergenic | 50.0% | |
| ! | GCTCATGGTGGTTTTTGTGG+TGG | - | chr1_1:26911814-26911833 | None:intergenic | 50.0% |
| ! | GTGGCTCATGGTGGTTTTTG+TGG | - | chr1_1:26911817-26911836 | None:intergenic | 50.0% |
| TCATGGTGGTTGTGGCATGA+TGG | - | chr1_1:26911842-26911861 | None:intergenic | 50.0% | |
| TGCAGCTGTGGTGGTAGATT+TGG | - | chr1_1:26911906-26911925 | None:intergenic | 50.0% | |
| GCTCGTGAGATGGTCATAGT+AGG | - | chr1_1:26911988-26912007 | None:intergenic | 50.0% | |
| GGACTGGAGCTGATCAAGAA+TGG | - | chr1_1:26912055-26912074 | None:intergenic | 50.0% | |
| GAGAATCCTTCGTCATCACG+GGG | + | chr1_1:26911120-26911139 | Msa0016170:CDS | 50.0% | |
| !! | CTTTGCAGGTGCTGAGTTTG+TGG | - | chr1_1:26911675-26911694 | None:intergenic | 50.0% |
| ATGGTGGTAAGAGGAGGTGA+TGG | - | chr1_1:26911734-26911753 | None:intergenic | 50.0% | |
| TTGGGTATGGTGGTAAGAGG+AGG | - | chr1_1:26911740-26911759 | None:intergenic | 50.0% | |
| !!! | GAGGCAAGTTTTGGGTATGG+TGG | - | chr1_1:26911750-26911769 | None:intergenic | 50.0% |
| !!! | GGAGAGGCAAGTTTTGGGTA+TGG | - | chr1_1:26911753-26911772 | None:intergenic | 50.0% |
| !! | GTTGGTGGAGAGGCAAGTTT+TGG | - | chr1_1:26911759-26911778 | None:intergenic | 50.0% |
| AATTGGGGTGGAAGTGATGG+TGG | - | chr1_1:26911783-26911802 | None:intergenic | 50.0% | |
| GTGGCAGATTTGAATTGGGG+TGG | - | chr1_1:26911795-26911814 | None:intergenic | 50.0% | |
| ! | GCTCATGGTGGTTTTTGTGG+TGG | - | chr1_1:26911814-26911833 | None:intergenic | 50.0% |
| ! | GTGGCTCATGGTGGTTTTTG+TGG | - | chr1_1:26911817-26911836 | None:intergenic | 50.0% |
| TCATGGTGGTTGTGGCATGA+TGG | - | chr1_1:26911842-26911861 | None:intergenic | 50.0% | |
| TGCAGCTGTGGTGGTAGATT+TGG | - | chr1_1:26911906-26911925 | None:intergenic | 50.0% | |
| GCTCGTGAGATGGTCATAGT+AGG | - | chr1_1:26911988-26912007 | None:intergenic | 50.0% | |
| GGACTGGAGCTGATCAAGAA+TGG | - | chr1_1:26912055-26912074 | None:intergenic | 50.0% | |
| !! | GCGTCGGTGTTGTTCTTTGC+AGG | - | chr1_1:26911689-26911708 | None:intergenic | 55.0% |
| !! | GGAGGTGATGGTGGTGATCT+TGG | - | chr1_1:26911722-26911741 | None:intergenic | 55.0% |
| ! | GTGGTAAGAGGAGGTGATGG+TGG | - | chr1_1:26911731-26911750 | None:intergenic | 55.0% |
| !! | TGATGGTGGTGTTGGTGGAG+AGG | - | chr1_1:26911769-26911788 | None:intergenic | 55.0% |
| !! | GGAAGTGATGGTGGTGTTGG+TGG | - | chr1_1:26911774-26911793 | None:intergenic | 55.0% |
| !! | GGTGGAAGTGATGGTGGTGT+TGG | - | chr1_1:26911777-26911796 | None:intergenic | 55.0% |
| !! | ATGATGGTGGTGGCTCATGG+TGG | - | chr1_1:26911826-26911845 | None:intergenic | 55.0% |
| !! | TGGTTGTGGCATGATGGTGG+TGG | - | chr1_1:26911836-26911855 | None:intergenic | 55.0% |
| TGGTGGTTGTGGCATGATGG+TGG | - | chr1_1:26911839-26911858 | None:intergenic | 55.0% | |
| GCTGTGGTGGTAGATTTGGC+TGG | - | chr1_1:26911902-26911921 | None:intergenic | 55.0% | |
| ! | GTTGTAGGTGGTGGTTGCTG+TGG | - | chr1_1:26911950-26911969 | None:intergenic | 55.0% |
| TTGTGTGGTGGCTCGTGAGA+TGG | - | chr1_1:26911998-26912017 | None:intergenic | 55.0% | |
| GATGGCTATGGGTGGTTGTG+TGG | - | chr1_1:26912013-26912032 | None:intergenic | 55.0% | |
| GGTTGTGTGATGGCTATGGG+TGG | - | chr1_1:26912021-26912040 | None:intergenic | 55.0% | |
| !! | GCGTCGGTGTTGTTCTTTGC+AGG | - | chr1_1:26911689-26911708 | None:intergenic | 55.0% |
| !! | GGAGGTGATGGTGGTGATCT+TGG | - | chr1_1:26911722-26911741 | None:intergenic | 55.0% |
| ! | GTGGTAAGAGGAGGTGATGG+TGG | - | chr1_1:26911731-26911750 | None:intergenic | 55.0% |
| !! | TGATGGTGGTGTTGGTGGAG+AGG | - | chr1_1:26911769-26911788 | None:intergenic | 55.0% |
| !! | GGAAGTGATGGTGGTGTTGG+TGG | - | chr1_1:26911774-26911793 | None:intergenic | 55.0% |
| !! | GGTGGAAGTGATGGTGGTGT+TGG | - | chr1_1:26911777-26911796 | None:intergenic | 55.0% |
| !! | ATGATGGTGGTGGCTCATGG+TGG | - | chr1_1:26911826-26911845 | None:intergenic | 55.0% |
| !! | TGGTTGTGGCATGATGGTGG+TGG | - | chr1_1:26911836-26911855 | None:intergenic | 55.0% |
| TGGTGGTTGTGGCATGATGG+TGG | - | chr1_1:26911839-26911858 | None:intergenic | 55.0% | |
| GCTGTGGTGGTAGATTTGGC+TGG | - | chr1_1:26911902-26911921 | None:intergenic | 55.0% | |
| ! | GTTGTAGGTGGTGGTTGCTG+TGG | - | chr1_1:26911950-26911969 | None:intergenic | 55.0% |
| TTGTGTGGTGGCTCGTGAGA+TGG | - | chr1_1:26911998-26912017 | None:intergenic | 55.0% | |
| GATGGCTATGGGTGGTTGTG+TGG | - | chr1_1:26912013-26912032 | None:intergenic | 55.0% | |
| GGTTGTGTGATGGCTATGGG+TGG | - | chr1_1:26912021-26912040 | None:intergenic | 55.0% | |
| !! | GGCATGATGGTGGTGGCTCA+TGG | - | chr1_1:26911829-26911848 | None:intergenic | 60.0% |
| TACCACCACAGCTGCACCGA+TGG | + | chr1_1:26911910-26911929 | Msa0016170:intron | 60.0% | |
| GGCTATGGGTGGTTGTGTGG+TGG | - | chr1_1:26912010-26912029 | None:intergenic | 60.0% | |
| !! | GGCATGATGGTGGTGGCTCA+TGG | - | chr1_1:26911829-26911848 | None:intergenic | 60.0% |
| TACCACCACAGCTGCACCGA+TGG | + | chr1_1:26911910-26911929 | Msa0016170:intron | 60.0% | |
| GGCTATGGGTGGTTGTGTGG+TGG | - | chr1_1:26912010-26912029 | None:intergenic | 60.0% | |
| GTCCATCGGTGCAGCTGTGG+TGG | - | chr1_1:26911915-26911934 | None:intergenic | 65.0% | |
| AGGGTCCATCGGTGCAGCTG+TGG | - | chr1_1:26911918-26911937 | None:intergenic | 65.0% | |
| GTCCATCGGTGCAGCTGTGG+TGG | - | chr1_1:26911915-26911934 | None:intergenic | 65.0% | |
| AGGGTCCATCGGTGCAGCTG+TGG | - | chr1_1:26911918-26911937 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 26910392 | 26912591 | 26910392 | ID=Msa0016170;Name=Msa0016170 |
| chr1_1 | mRNA | 26910392 | 26912591 | 26910392 | ID=Msa0016170-mRNA-1;Parent=Msa0016170;Name=Msa0016170-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0|0|1|1|1|3|0|244 |
| chr1_1 | exon | 26910392 | 26910466 | 26910392 | ID=Msa0016170-mRNA-1:exon:9011;Parent=Msa0016170-mRNA-1 |
| chr1_1 | exon | 26910808 | 26911176 | 26910808 | ID=Msa0016170-mRNA-1:exon:9012;Parent=Msa0016170-mRNA-1 |
| chr1_1 | exon | 26912301 | 26912591 | 26912301 | ID=Msa0016170-mRNA-1:exon:9013;Parent=Msa0016170-mRNA-1 |
| chr1_1 | CDS | 26910392 | 26910466 | 26910392 | ID=Msa0016170-mRNA-1:cds;Parent=Msa0016170-mRNA-1 |
| chr1_1 | CDS | 26910808 | 26911176 | 26910808 | ID=Msa0016170-mRNA-1:cds;Parent=Msa0016170-mRNA-1 |
| chr1_1 | CDS | 26912301 | 26912591 | 26912301 | ID=Msa0016170-mRNA-1:cds;Parent=Msa0016170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
