Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0016190 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0016190 | MtrunA17_Chr1g0163201 | 77.346 | 309 | 58 | 3 | 2 | 298 | 87 | 395 | 1.46e-163 | 460 |
| Msa0016190 | MtrunA17_Chr1g0163181 | 65.607 | 346 | 68 | 5 | 2 | 298 | 89 | 432 | 1.43e-149 | 426 |
| Msa0016190 | MtrunA17_Chr1g0163151 | 72.973 | 222 | 60 | 0 | 75 | 296 | 1 | 222 | 5.30e-119 | 340 |
| Msa0016190 | MtrunA17_Chr1g0163111 | 69.198 | 237 | 56 | 4 | 75 | 299 | 1 | 232 | 1.18e-109 | 317 |
| Msa0016190 | MtrunA17_Chr1g0163251 | 40.741 | 243 | 104 | 4 | 2 | 228 | 89 | 307 | 2.05e-47 | 163 |
| Msa0016190 | MtrunA17_Chr6g0476171 | 40.092 | 217 | 125 | 4 | 84 | 295 | 29 | 245 | 1.17e-44 | 152 |
| Msa0016190 | MtrunA17_Chr1g0162151 | 40.351 | 228 | 112 | 5 | 75 | 297 | 1 | 209 | 2.65e-43 | 147 |
| Msa0016190 | MtrunA17_Chr1g0163261 | 37.681 | 207 | 115 | 2 | 2 | 199 | 93 | 294 | 2.80e-37 | 134 |
| Msa0016190 | MtrunA17_Chr1g0163231 | 42.347 | 196 | 97 | 8 | 2 | 189 | 93 | 280 | 6.74e-35 | 128 |
| Msa0016190 | MtrunA17_Chr1g0171611 | 43.284 | 201 | 76 | 7 | 2 | 189 | 93 | 268 | 1.83e-31 | 119 |
| Msa0016190 | MtrunA17_Chr1g0163091 | 41.958 | 143 | 77 | 2 | 75 | 212 | 1 | 142 | 1.63e-30 | 112 |
| Msa0016190 | MtrunA17_Chr1g0163131 | 39.394 | 132 | 73 | 4 | 170 | 297 | 180 | 308 | 1.91e-20 | 89.4 |
| Msa0016190 | MtrunA17_Chr1g0163191 | 81.690 | 71 | 10 | 1 | 2 | 69 | 89 | 159 | 1.72e-18 | 80.9 |
| Msa0016190 | MtrunA17_Chr8g0390841 | 32.394 | 142 | 81 | 7 | 61 | 199 | 214 | 343 | 3.25e-13 | 69.7 |
| Msa0016190 | MtrunA17_Chr3g0131891 | 28.293 | 205 | 123 | 7 | 2 | 188 | 105 | 303 | 7.19e-12 | 65.1 |
| Msa0016190 | MtrunA17_Chr1g0163241 | 56.061 | 66 | 20 | 2 | 2 | 66 | 91 | 148 | 1.88e-11 | 61.6 |
| Msa0016190 | MtrunA17_Chr7g0233521 | 31.000 | 200 | 119 | 8 | 1 | 188 | 71 | 263 | 6.72e-11 | 61.6 |
| Msa0016190 | MtrunA17_Chr1g0208771 | 32.624 | 141 | 78 | 5 | 68 | 205 | 181 | 307 | 7.22e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 63 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTGGGATTGCTTCGTTTC+CGG | 0.165431 | 1_1:+26939859 | None:intergenic |
| TTAAAACCTTGTAGTTTCTT+TGG | 0.217113 | 1_1:+26939842 | None:intergenic |
| ATTGTCCTTTGAGCTTTCTT+TGG | 0.254871 | 1_1:+26940700 | None:intergenic |
| TTAATGGAACTGTAACAATA+AGG | 0.273629 | 1_1:-26940060 | Msa0016190:CDS |
| TTCATCAACTGATTTGATAT+TGG | 0.273749 | 1_1:+26940816 | None:intergenic |
| GCATAACACATTCAAGGTTT+TGG | 0.294441 | 1_1:-26939395 | Msa0016190:CDS |
| AAATATTGTGGAGTTGAAAA+TGG | 0.298192 | 1_1:-26939223 | Msa0016190:CDS |
| AAAGCTCAAAGGACAATAAA+TGG | 0.303877 | 1_1:-26940694 | Msa0016190:CDS |
| TAAAACCTTGTAGTTTCTTT+GGG | 0.320506 | 1_1:+26939843 | None:intergenic |
| CATTAACAGCTTCGGATGTT+TGG | 0.326222 | 1_1:+26940253 | None:intergenic |
| GTGGTGGTTGGAAAATATTC+AGG | 0.328531 | 1_1:-26939970 | Msa0016190:CDS |
| TTACAAAGAAAGATCTTGTT+TGG | 0.332547 | 1_1:-26939993 | Msa0016190:CDS |
| TAATGGAACTGTAACAATAA+GGG | 0.353376 | 1_1:-26940059 | Msa0016190:CDS |
| GAGGTTAGTTTGAGGTATTA+TGG | 0.363534 | 1_1:-26940016 | Msa0016190:CDS |
| ATAGTGACAGTGAATGAAAA+AGG | 0.401426 | 1_1:+26939890 | None:intergenic |
| AGTATTCGTGGCTGCAAGTT+CGG | 0.421831 | 1_1:-26939162 | Msa0016190:CDS |
| TACAAAGAAAGATCTTGTTT+GGG | 0.433738 | 1_1:-26939992 | Msa0016190:CDS |
| AATATTGTGGAGTTGAAAAT+GGG | 0.451536 | 1_1:-26939222 | Msa0016190:CDS |
| AAGTGATGAAGAGAGTGATA+AGG | 0.461668 | 1_1:-26940731 | Msa0016190:CDS |
| AAAGAATGCAATGTGGAGAT+TGG | 0.464528 | 1_1:-26939117 | Msa0016190:CDS |
| GGGATTCTCATTAACAGCTT+CGG | 0.464683 | 1_1:+26940245 | None:intergenic |
| CAAAGTGGCCATGGTGAAGA+AGG | 0.465563 | 1_1:-26940286 | Msa0016190:CDS |
| CGTGGCTGCAAGTTCGGTAA+AGG | 0.465915 | 1_1:-26939156 | Msa0016190:CDS |
| TGTCATTATAACTTCAAAAG+AGG | 0.475259 | 1_1:+26940224 | None:intergenic |
| ATAGTTTATTTCTAAAGTGT+TGG | 0.483000 | 1_1:+26940840 | None:intergenic |
| GGTGCTGAAGCCACTGAAGA+AGG | 0.489506 | 1_1:-26940793 | Msa0016190:CDS |
| GATGAAGCATAACACATTCA+AGG | 0.490908 | 1_1:-26939401 | Msa0016190:CDS |
| CCAAAGGAATTTATGAAAAG+AGG | 0.492978 | 1_1:-26939255 | Msa0016190:CDS |
| GATCTTGTTTGGGTGGTGGT+TGG | 0.501988 | 1_1:-26939982 | Msa0016190:CDS |
| GTCATTATAACTTCAAAAGA+GGG | 0.507540 | 1_1:+26940225 | None:intergenic |
| CATGAGGAAGCCACTGAAGA+AGG | 0.509106 | 1_1:-26940760 | Msa0016190:CDS |
| AATTATTATGAGAGTATTCG+TGG | 0.512630 | 1_1:-26939174 | Msa0016190:CDS |
| GGAGTGTGGAGGTTAGTTTG+AGG | 0.513468 | 1_1:-26940024 | Msa0016190:CDS |
| ACTTTCTTTACCTTCTTCAG+TGG | 0.514754 | 1_1:+26940783 | None:intergenic |
| ACTTTCTTCACCTTCTTCAG+TGG | 0.520796 | 1_1:+26940750 | None:intergenic |
| AGGATGTCATGGAAATATTG+TGG | 0.534496 | 1_1:-26939235 | Msa0016190:CDS |
| TTTATGAAAAGAGGATGTCA+TGG | 0.534842 | 1_1:-26939246 | Msa0016190:CDS |
| CAATAAGGGTTGGTAATGAA+AGG | 0.535875 | 1_1:-26940045 | Msa0016190:CDS |
| AATGGCAAGAGAAAATTCTC+AGG | 0.536390 | 1_1:-26940676 | Msa0016190:intron |
| AATATCAAATCAGTTGATGA+AGG | 0.540855 | 1_1:-26940814 | Msa0016190:CDS |
| TACCGTACAGAAGGTCATGA+TGG | 0.540870 | 1_1:-26939424 | Msa0016190:intron |
| AAAGAAAGATCTTGTTTGGG+TGG | 0.548816 | 1_1:-26939989 | Msa0016190:CDS |
| GCTGCAAGTTCGGTAAAGGT+TGG | 0.563561 | 1_1:-26939152 | Msa0016190:CDS |
| GAAAGATCTTGTTTGGGTGG+TGG | 0.568994 | 1_1:-26939986 | Msa0016190:CDS |
| TTTGGTGAAGAACACAGCCC+CGG | 0.573521 | 1_1:-26939377 | Msa0016190:intron |
| TGAAAATGGGGAGGAAGCCA+TGG | 0.575061 | 1_1:-26939209 | Msa0016190:CDS |
| GTATTTGCAGAGTGTACCAA+AGG | 0.583029 | 1_1:-26939271 | Msa0016190:intron |
| ACTGTCACTATTACTCGTGC+CGG | 0.586569 | 1_1:-26939878 | Msa0016190:CDS |
| ACTTACAAAGAAATAGCCAT+TGG | 0.588354 | 1_1:+26940191 | None:intergenic |
| AGGTTGTAACAAAGTGGCCA+TGG | 0.594476 | 1_1:-26940295 | Msa0016190:CDS |
| GCAATCCCAAAGAAACTACA+AGG | 0.598347 | 1_1:-26939848 | Msa0016190:intron |
| CTTTACAGGTTGTAACAAAG+TGG | 0.599398 | 1_1:-26940301 | Msa0016190:intron |
| TGGTGGTTGGAAAATATTCA+GGG | 0.603185 | 1_1:-26939969 | Msa0016190:CDS |
| ATGACACAATCTTACACCAA+TGG | 0.609025 | 1_1:-26940207 | Msa0016190:CDS |
| GGTTGGTAATGAAAGGAGTG+TGG | 0.615653 | 1_1:-26940038 | Msa0016190:CDS |
| ACCGTACAGAAGGTCATGAT+GGG | 0.620074 | 1_1:-26939423 | Msa0016190:intron |
| GGAACTGTAACAATAAGGGT+TGG | 0.627229 | 1_1:-26940055 | Msa0016190:CDS |
| TTGTGGAGTTGAAAATGGGG+AGG | 0.632079 | 1_1:-26939218 | Msa0016190:CDS |
| TGGTAATGAAAGGAGTGTGG+AGG | 0.642373 | 1_1:-26940035 | Msa0016190:CDS |
| AAATGCCAAAGAAAGCTCAA+AGG | 0.663329 | 1_1:-26940705 | Msa0016190:CDS |
| AGAAGGTAAAGAAAGTCATG+AGG | 0.669212 | 1_1:-26940776 | Msa0016190:CDS |
| ATATTGTGGAGTTGAAAATG+GGG | 0.692849 | 1_1:-26939221 | Msa0016190:CDS |
| ATTCATGAAAGAATGCAATG+TGG | 0.698838 | 1_1:-26939124 | Msa0016190:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAAAATATGCTATTTTTT+TGG | - | chr1_1:26939541-26939560 | Msa0016190:intron | 10.0% |
| !!! | ATGAATAATTTATAAGTTTT+TGG | - | chr1_1:26940355-26940374 | Msa0016190:intron | 10.0% |
| !! | CATATAATATATAGTTAATT+AGG | + | chr1_1:26940449-26940468 | None:intergenic | 10.0% |
| !!! | ATAAAAATATGCTATTTTTT+TGG | - | chr1_1:26939541-26939560 | Msa0016190:intron | 10.0% |
| !!! | ATGAATAATTTATAAGTTTT+TGG | - | chr1_1:26940355-26940374 | Msa0016190:intron | 10.0% |
| !! | CATATAATATATAGTTAATT+AGG | + | chr1_1:26940449-26940468 | None:intergenic | 10.0% |
| !!! | TATTTTAAGGTTAAGATATT+TGG | - | chr1_1:26939133-26939152 | Msa0016190:CDS | 15.0% |
| !! | ATTATATCTTTAAACTTTAC+AGG | - | chr1_1:26939683-26939702 | Msa0016190:intron | 15.0% |
| !!! | AGTTTTTAATAGTTAGTAAT+TGG | - | chr1_1:26940382-26940401 | Msa0016190:intron | 15.0% |
| !!! | TCAAATATCTCTAAATTTTT+TGG | - | chr1_1:26940509-26940528 | Msa0016190:intron | 15.0% |
| !!! | CAAATATCTCTAAATTTTTT+GGG | - | chr1_1:26940510-26940529 | Msa0016190:intron | 15.0% |
| !!! | TTTTATTTAATTAATCCTAC+CGG | + | chr1_1:26940643-26940662 | None:intergenic | 15.0% |
| !!! | TATTTTAAGGTTAAGATATT+TGG | - | chr1_1:26939133-26939152 | Msa0016190:CDS | 15.0% |
| !! | ATTATATCTTTAAACTTTAC+AGG | - | chr1_1:26939683-26939702 | Msa0016190:intron | 15.0% |
| !!! | AGTTTTTAATAGTTAGTAAT+TGG | - | chr1_1:26940382-26940401 | Msa0016190:intron | 15.0% |
| !!! | TCAAATATCTCTAAATTTTT+TGG | - | chr1_1:26940509-26940528 | Msa0016190:intron | 15.0% |
| !!! | CAAATATCTCTAAATTTTTT+GGG | - | chr1_1:26940510-26940529 | Msa0016190:intron | 15.0% |
| !!! | TTTTATTTAATTAATCCTAC+CGG | + | chr1_1:26940643-26940662 | None:intergenic | 15.0% |
| !!! | ACATTTGGTTTCAAAAAAAT+TGG | - | chr1_1:26939047-26939066 | Msa0016190:CDS | 20.0% |
| !!! | CATTTGGTTTCAAAAAAATT+GGG | - | chr1_1:26939048-26939067 | Msa0016190:CDS | 20.0% |
| !!! | ATAGTTTATTTCTAAAGTGT+TGG | + | chr1_1:26939161-26939180 | None:intergenic | 20.0% |
| !!! | AAATATGCTATTTTTTTGGA+AGG | - | chr1_1:26939545-26939564 | Msa0016190:intron | 20.0% |
| !!! | GAAAACTTGAAAGATTTTAA+TGG | - | chr1_1:26939922-26939941 | Msa0016190:CDS | 20.0% |
| !! | TTTATTTAATTAATCCTACC+GGG | + | chr1_1:26940642-26940661 | None:intergenic | 20.0% |
| !!! | ACATTTGGTTTCAAAAAAAT+TGG | - | chr1_1:26939047-26939066 | Msa0016190:CDS | 20.0% |
| !!! | CATTTGGTTTCAAAAAAATT+GGG | - | chr1_1:26939048-26939067 | Msa0016190:CDS | 20.0% |
| !!! | ATAGTTTATTTCTAAAGTGT+TGG | + | chr1_1:26939161-26939180 | None:intergenic | 20.0% |
| !!! | AAATATGCTATTTTTTTGGA+AGG | - | chr1_1:26939545-26939564 | Msa0016190:intron | 20.0% |
| !!! | GAAAACTTGAAAGATTTTAA+TGG | - | chr1_1:26939922-26939941 | Msa0016190:CDS | 20.0% |
| !! | TTTATTTAATTAATCCTACC+GGG | + | chr1_1:26940642-26940661 | None:intergenic | 20.0% |
| ! | TTTGCAAAGTCTTTCAAATA+TGG | - | chr1_1:26939076-26939095 | Msa0016190:CDS | 25.0% |
| ! | CTCTTAACTTTCAAATTCAT+TGG | - | chr1_1:26939103-26939122 | Msa0016190:CDS | 25.0% |
| ! | TTAACTTTCAAATTCATTGG+TGG | - | chr1_1:26939106-26939125 | Msa0016190:CDS | 25.0% |
| !!! | TTCATCAACTGATTTGATAT+TGG | + | chr1_1:26939185-26939204 | None:intergenic | 25.0% |
| !!! | AATATCAAATCAGTTGATGA+AGG | - | chr1_1:26939184-26939203 | Msa0016190:CDS | 25.0% |
| ! | GTCATTATAACTTCAAAAGA+GGG | + | chr1_1:26939776-26939795 | None:intergenic | 25.0% |
| ! | TGTCATTATAACTTCAAAAG+AGG | + | chr1_1:26939777-26939796 | None:intergenic | 25.0% |
| ! | TTAATGGAACTGTAACAATA+AGG | - | chr1_1:26939938-26939957 | Msa0016190:CDS | 25.0% |
| ! | TAATGGAACTGTAACAATAA+GGG | - | chr1_1:26939939-26939958 | Msa0016190:CDS | 25.0% |
| ! | TTACAAAGAAAGATCTTGTT+TGG | - | chr1_1:26940005-26940024 | Msa0016190:CDS | 25.0% |
| !! | TACAAAGAAAGATCTTGTTT+GGG | - | chr1_1:26940006-26940025 | Msa0016190:CDS | 25.0% |
| ! | TAAAACCTTGTAGTTTCTTT+GGG | + | chr1_1:26940158-26940177 | None:intergenic | 25.0% |
| ! | TTAAAACCTTGTAGTTTCTT+TGG | + | chr1_1:26940159-26940178 | None:intergenic | 25.0% |
| ! | TTATTTAATTAATCCTACCG+GGG | + | chr1_1:26940641-26940660 | None:intergenic | 25.0% |
| ! | AAATATTGTGGAGTTGAAAA+TGG | - | chr1_1:26940775-26940794 | Msa0016190:CDS | 25.0% |
| ! | AATATTGTGGAGTTGAAAAT+GGG | - | chr1_1:26940776-26940795 | Msa0016190:CDS | 25.0% |
| !!! | AATTATTATGAGAGTATTCG+TGG | - | chr1_1:26940824-26940843 | Msa0016190:CDS | 25.0% |
| ! | TTTGCAAAGTCTTTCAAATA+TGG | - | chr1_1:26939076-26939095 | Msa0016190:CDS | 25.0% |
| ! | CTCTTAACTTTCAAATTCAT+TGG | - | chr1_1:26939103-26939122 | Msa0016190:CDS | 25.0% |
| ! | TTAACTTTCAAATTCATTGG+TGG | - | chr1_1:26939106-26939125 | Msa0016190:CDS | 25.0% |
| !!! | TTCATCAACTGATTTGATAT+TGG | + | chr1_1:26939185-26939204 | None:intergenic | 25.0% |
| !!! | AATATCAAATCAGTTGATGA+AGG | - | chr1_1:26939184-26939203 | Msa0016190:CDS | 25.0% |
| ! | GTCATTATAACTTCAAAAGA+GGG | + | chr1_1:26939776-26939795 | None:intergenic | 25.0% |
| ! | TGTCATTATAACTTCAAAAG+AGG | + | chr1_1:26939777-26939796 | None:intergenic | 25.0% |
| ! | TTAATGGAACTGTAACAATA+AGG | - | chr1_1:26939938-26939957 | Msa0016190:CDS | 25.0% |
| ! | TAATGGAACTGTAACAATAA+GGG | - | chr1_1:26939939-26939958 | Msa0016190:CDS | 25.0% |
| ! | TTACAAAGAAAGATCTTGTT+TGG | - | chr1_1:26940005-26940024 | Msa0016190:CDS | 25.0% |
| !! | TACAAAGAAAGATCTTGTTT+GGG | - | chr1_1:26940006-26940025 | Msa0016190:CDS | 25.0% |
| ! | TAAAACCTTGTAGTTTCTTT+GGG | + | chr1_1:26940158-26940177 | None:intergenic | 25.0% |
| ! | TTAAAACCTTGTAGTTTCTT+TGG | + | chr1_1:26940159-26940178 | None:intergenic | 25.0% |
| ! | TTATTTAATTAATCCTACCG+GGG | + | chr1_1:26940641-26940660 | None:intergenic | 25.0% |
| ! | AAATATTGTGGAGTTGAAAA+TGG | - | chr1_1:26940775-26940794 | Msa0016190:CDS | 25.0% |
| ! | AATATTGTGGAGTTGAAAAT+GGG | - | chr1_1:26940776-26940795 | Msa0016190:CDS | 25.0% |
| !!! | AATTATTATGAGAGTATTCG+TGG | - | chr1_1:26940824-26940843 | Msa0016190:CDS | 25.0% |
| !! | CATTGGTGGATCATATTTTA+AGG | - | chr1_1:26939120-26939139 | Msa0016190:CDS | 30.0% |
| AAAGCTCAAAGGACAATAAA+TGG | - | chr1_1:26939304-26939323 | Msa0016190:intron | 30.0% | |
| GAAAATTCTCAGGTAAGTTT+AGG | - | chr1_1:26939332-26939351 | Msa0016190:intron | 30.0% | |
| ! | AACCTTTAAGAGTTATTCCA+TGG | - | chr1_1:26939421-26939440 | Msa0016190:intron | 30.0% |
| AACCATGGAATAACTCTTAA+AGG | + | chr1_1:26939426-26939445 | None:intergenic | 30.0% | |
| GAAAAAATCACAACAAACCA+TGG | + | chr1_1:26939441-26939460 | None:intergenic | 30.0% | |
| TCTGAAAGCTTGTAAATCTA+AGG | - | chr1_1:26939461-26939480 | Msa0016190:intron | 30.0% | |
| ! | AGTGTCTTGAAAATCGTTTT+TGG | - | chr1_1:26939495-26939514 | Msa0016190:intron | 30.0% |
| ACTTACAAAGAAATAGCCAT+TGG | + | chr1_1:26939810-26939829 | None:intergenic | 30.0% | |
| ! | TAAACCATGATTTGAAACAG+TGG | - | chr1_1:26939878-26939897 | Msa0016190:CDS | 30.0% |
| ! | TTTTCTCTTGAAAACTCACT+TGG | + | chr1_1:26939907-26939926 | None:intergenic | 30.0% |
| ATAGTGACAGTGAATGAAAA+AGG | + | chr1_1:26940111-26940130 | None:intergenic | 30.0% | |
| AACTGAATCCTACATAAGTT+AGG | + | chr1_1:26940408-26940427 | None:intergenic | 30.0% | |
| ! | CCTCTTTTCATAAATTCCTT+TGG | + | chr1_1:26940746-26940765 | None:intergenic | 30.0% |
| CCAAAGGAATTTATGAAAAG+AGG | - | chr1_1:26940743-26940762 | Msa0016190:CDS | 30.0% | |
| TTTATGAAAAGAGGATGTCA+TGG | - | chr1_1:26940752-26940771 | Msa0016190:CDS | 30.0% | |
| ATATTGTGGAGTTGAAAATG+GGG | - | chr1_1:26940777-26940796 | Msa0016190:CDS | 30.0% | |
| !! | TAATTCACTTTTACGAACCA+TGG | + | chr1_1:26940809-26940828 | None:intergenic | 30.0% |
| ATTCATGAAAGAATGCAATG+TGG | - | chr1_1:26940874-26940893 | Msa0016190:intron | 30.0% | |
| !! | CATTGGTGGATCATATTTTA+AGG | - | chr1_1:26939120-26939139 | Msa0016190:CDS | 30.0% |
| AAAGCTCAAAGGACAATAAA+TGG | - | chr1_1:26939304-26939323 | Msa0016190:intron | 30.0% | |
| GAAAATTCTCAGGTAAGTTT+AGG | - | chr1_1:26939332-26939351 | Msa0016190:intron | 30.0% | |
| ! | AACCTTTAAGAGTTATTCCA+TGG | - | chr1_1:26939421-26939440 | Msa0016190:intron | 30.0% |
| AACCATGGAATAACTCTTAA+AGG | + | chr1_1:26939426-26939445 | None:intergenic | 30.0% | |
| GAAAAAATCACAACAAACCA+TGG | + | chr1_1:26939441-26939460 | None:intergenic | 30.0% | |
| TCTGAAAGCTTGTAAATCTA+AGG | - | chr1_1:26939461-26939480 | Msa0016190:intron | 30.0% | |
| ! | AGTGTCTTGAAAATCGTTTT+TGG | - | chr1_1:26939495-26939514 | Msa0016190:intron | 30.0% |
| ACTTACAAAGAAATAGCCAT+TGG | + | chr1_1:26939810-26939829 | None:intergenic | 30.0% | |
| ! | TAAACCATGATTTGAAACAG+TGG | - | chr1_1:26939878-26939897 | Msa0016190:CDS | 30.0% |
| ! | TTTTCTCTTGAAAACTCACT+TGG | + | chr1_1:26939907-26939926 | None:intergenic | 30.0% |
| ATAGTGACAGTGAATGAAAA+AGG | + | chr1_1:26940111-26940130 | None:intergenic | 30.0% | |
| AACTGAATCCTACATAAGTT+AGG | + | chr1_1:26940408-26940427 | None:intergenic | 30.0% | |
| ! | CCTCTTTTCATAAATTCCTT+TGG | + | chr1_1:26940746-26940765 | None:intergenic | 30.0% |
| CCAAAGGAATTTATGAAAAG+AGG | - | chr1_1:26940743-26940762 | Msa0016190:CDS | 30.0% | |
| TTTATGAAAAGAGGATGTCA+TGG | - | chr1_1:26940752-26940771 | Msa0016190:CDS | 30.0% | |
| ATATTGTGGAGTTGAAAATG+GGG | - | chr1_1:26940777-26940796 | Msa0016190:CDS | 30.0% | |
| !! | TAATTCACTTTTACGAACCA+TGG | + | chr1_1:26940809-26940828 | None:intergenic | 30.0% |
| ATTCATGAAAGAATGCAATG+TGG | - | chr1_1:26940874-26940893 | Msa0016190:intron | 30.0% | |
| ACTTTCTTTACCTTCTTCAG+TGG | + | chr1_1:26939218-26939237 | None:intergenic | 35.0% | |
| AGAAGGTAAAGAAAGTCATG+AGG | - | chr1_1:26939222-26939241 | Msa0016190:CDS | 35.0% | |
| AAGTGATGAAGAGAGTGATA+AGG | - | chr1_1:26939267-26939286 | Msa0016190:intron | 35.0% | |
| AAATGCCAAAGAAAGCTCAA+AGG | - | chr1_1:26939293-26939312 | Msa0016190:intron | 35.0% | |
| ATTGTCCTTTGAGCTTTCTT+TGG | + | chr1_1:26939301-26939320 | None:intergenic | 35.0% | |
| AATGGCAAGAGAAAATTCTC+AGG | - | chr1_1:26939322-26939341 | Msa0016190:intron | 35.0% | |
| CTTTACAGGTTGTAACAAAG+TGG | - | chr1_1:26939697-26939716 | Msa0016190:intron | 35.0% | |
| ATGACACAATCTTACACCAA+TGG | - | chr1_1:26939791-26939810 | Msa0016190:intron | 35.0% | |
| GTAACCACTGTTTCAAATCA+TGG | + | chr1_1:26939885-26939904 | None:intergenic | 35.0% | |
| !! | CAATAAGGGTTGGTAATGAA+AGG | - | chr1_1:26939953-26939972 | Msa0016190:CDS | 35.0% |
| !! | GAGGTTAGTTTGAGGTATTA+TGG | - | chr1_1:26939982-26940001 | Msa0016190:CDS | 35.0% |
| ! | AAAGAAAGATCTTGTTTGGG+TGG | - | chr1_1:26940009-26940028 | Msa0016190:CDS | 35.0% |
| TGGTGGTTGGAAAATATTCA+GGG | - | chr1_1:26940029-26940048 | Msa0016190:CDS | 35.0% | |
| ! | GTAATTGGCCTAACTTATGT+AGG | - | chr1_1:26940397-26940416 | Msa0016190:intron | 35.0% |
| GATGAAGCATAACACATTCA+AGG | - | chr1_1:26940597-26940616 | Msa0016190:intron | 35.0% | |
| ! | GCATAACACATTCAAGGTTT+TGG | - | chr1_1:26940603-26940622 | Msa0016190:intron | 35.0% |
| AGGATGTCATGGAAATATTG+TGG | - | chr1_1:26940763-26940782 | Msa0016190:CDS | 35.0% | |
| AAAGAATGCAATGTGGAGAT+TGG | - | chr1_1:26940881-26940900 | Msa0016190:intron | 35.0% | |
| ACTTTCTTTACCTTCTTCAG+TGG | + | chr1_1:26939218-26939237 | None:intergenic | 35.0% | |
| AGAAGGTAAAGAAAGTCATG+AGG | - | chr1_1:26939222-26939241 | Msa0016190:CDS | 35.0% | |
| AAGTGATGAAGAGAGTGATA+AGG | - | chr1_1:26939267-26939286 | Msa0016190:intron | 35.0% | |
| AAATGCCAAAGAAAGCTCAA+AGG | - | chr1_1:26939293-26939312 | Msa0016190:intron | 35.0% | |
| ATTGTCCTTTGAGCTTTCTT+TGG | + | chr1_1:26939301-26939320 | None:intergenic | 35.0% | |
| AATGGCAAGAGAAAATTCTC+AGG | - | chr1_1:26939322-26939341 | Msa0016190:intron | 35.0% | |
| CTTTACAGGTTGTAACAAAG+TGG | - | chr1_1:26939697-26939716 | Msa0016190:intron | 35.0% | |
| ATGACACAATCTTACACCAA+TGG | - | chr1_1:26939791-26939810 | Msa0016190:intron | 35.0% | |
| GTAACCACTGTTTCAAATCA+TGG | + | chr1_1:26939885-26939904 | None:intergenic | 35.0% | |
| !! | CAATAAGGGTTGGTAATGAA+AGG | - | chr1_1:26939953-26939972 | Msa0016190:CDS | 35.0% |
| !! | GAGGTTAGTTTGAGGTATTA+TGG | - | chr1_1:26939982-26940001 | Msa0016190:CDS | 35.0% |
| ! | AAAGAAAGATCTTGTTTGGG+TGG | - | chr1_1:26940009-26940028 | Msa0016190:CDS | 35.0% |
| TGGTGGTTGGAAAATATTCA+GGG | - | chr1_1:26940029-26940048 | Msa0016190:CDS | 35.0% | |
| ! | GTAATTGGCCTAACTTATGT+AGG | - | chr1_1:26940397-26940416 | Msa0016190:intron | 35.0% |
| GATGAAGCATAACACATTCA+AGG | - | chr1_1:26940597-26940616 | Msa0016190:intron | 35.0% | |
| ! | GCATAACACATTCAAGGTTT+TGG | - | chr1_1:26940603-26940622 | Msa0016190:intron | 35.0% |
| AGGATGTCATGGAAATATTG+TGG | - | chr1_1:26940763-26940782 | Msa0016190:CDS | 35.0% | |
| AAAGAATGCAATGTGGAGAT+TGG | - | chr1_1:26940881-26940900 | Msa0016190:intron | 35.0% | |
| ACTTTCTTCACCTTCTTCAG+TGG | + | chr1_1:26939251-26939270 | None:intergenic | 40.0% | |
| !! | TTTTCTAGCCTTCTTCACCA+TGG | + | chr1_1:26939723-26939742 | None:intergenic | 40.0% |
| CATTAACAGCTTCGGATGTT+TGG | + | chr1_1:26939748-26939767 | None:intergenic | 40.0% | |
| GGGATTCTCATTAACAGCTT+CGG | + | chr1_1:26939756-26939775 | None:intergenic | 40.0% | |
| GGAACTGTAACAATAAGGGT+TGG | - | chr1_1:26939943-26939962 | Msa0016190:CDS | 40.0% | |
| GTGGTGGTTGGAAAATATTC+AGG | - | chr1_1:26940028-26940047 | Msa0016190:CDS | 40.0% | |
| GCAATCCCAAAGAAACTACA+AGG | - | chr1_1:26940150-26940169 | Msa0016190:intron | 40.0% | |
| TTATGCTTGTACCGTACAGA+AGG | - | chr1_1:26940565-26940584 | Msa0016190:intron | 40.0% | |
| GTATTTGCAGAGTGTACCAA+AGG | - | chr1_1:26940727-26940746 | Msa0016190:CDS | 40.0% | |
| ACTTTCTTCACCTTCTTCAG+TGG | + | chr1_1:26939251-26939270 | None:intergenic | 40.0% | |
| !! | TTTTCTAGCCTTCTTCACCA+TGG | + | chr1_1:26939723-26939742 | None:intergenic | 40.0% |
| CATTAACAGCTTCGGATGTT+TGG | + | chr1_1:26939748-26939767 | None:intergenic | 40.0% | |
| GGGATTCTCATTAACAGCTT+CGG | + | chr1_1:26939756-26939775 | None:intergenic | 40.0% | |
| GGAACTGTAACAATAAGGGT+TGG | - | chr1_1:26939943-26939962 | Msa0016190:CDS | 40.0% | |
| GTGGTGGTTGGAAAATATTC+AGG | - | chr1_1:26940028-26940047 | Msa0016190:CDS | 40.0% | |
| GCAATCCCAAAGAAACTACA+AGG | - | chr1_1:26940150-26940169 | Msa0016190:intron | 40.0% | |
| TTATGCTTGTACCGTACAGA+AGG | - | chr1_1:26940565-26940584 | Msa0016190:intron | 40.0% | |
| GTATTTGCAGAGTGTACCAA+AGG | - | chr1_1:26940727-26940746 | Msa0016190:CDS | 40.0% | |
| AGGTTGTAACAAAGTGGCCA+TGG | - | chr1_1:26939703-26939722 | Msa0016190:intron | 45.0% | |
| !! | GGTTGGTAATGAAAGGAGTG+TGG | - | chr1_1:26939960-26939979 | Msa0016190:CDS | 45.0% |
| ! | TGGTAATGAAAGGAGTGTGG+AGG | - | chr1_1:26939963-26939982 | Msa0016190:CDS | 45.0% |
| ! | GAAAGATCTTGTTTGGGTGG+TGG | - | chr1_1:26940012-26940031 | Msa0016190:CDS | 45.0% |
| ACTGTCACTATTACTCGTGC+CGG | - | chr1_1:26940120-26940139 | Msa0016190:intron | 45.0% | |
| !! | CTTTGGGATTGCTTCGTTTC+CGG | + | chr1_1:26940142-26940161 | None:intergenic | 45.0% |
| TACCGTACAGAAGGTCATGA+TGG | - | chr1_1:26940574-26940593 | Msa0016190:intron | 45.0% | |
| ACCGTACAGAAGGTCATGAT+GGG | - | chr1_1:26940575-26940594 | Msa0016190:intron | 45.0% | |
| TCCCATCATGACCTTCTGTA+CGG | + | chr1_1:26940579-26940598 | None:intergenic | 45.0% | |
| TTGTGGAGTTGAAAATGGGG+AGG | - | chr1_1:26940780-26940799 | Msa0016190:CDS | 45.0% | |
| AGTATTCGTGGCTGCAAGTT+CGG | - | chr1_1:26940836-26940855 | Msa0016190:CDS | 45.0% | |
| AGGTTGTAACAAAGTGGCCA+TGG | - | chr1_1:26939703-26939722 | Msa0016190:intron | 45.0% | |
| !! | GGTTGGTAATGAAAGGAGTG+TGG | - | chr1_1:26939960-26939979 | Msa0016190:CDS | 45.0% |
| ! | TGGTAATGAAAGGAGTGTGG+AGG | - | chr1_1:26939963-26939982 | Msa0016190:CDS | 45.0% |
| ! | GAAAGATCTTGTTTGGGTGG+TGG | - | chr1_1:26940012-26940031 | Msa0016190:CDS | 45.0% |
| ACTGTCACTATTACTCGTGC+CGG | - | chr1_1:26940120-26940139 | Msa0016190:intron | 45.0% | |
| !! | CTTTGGGATTGCTTCGTTTC+CGG | + | chr1_1:26940142-26940161 | None:intergenic | 45.0% |
| TACCGTACAGAAGGTCATGA+TGG | - | chr1_1:26940574-26940593 | Msa0016190:intron | 45.0% | |
| ACCGTACAGAAGGTCATGAT+GGG | - | chr1_1:26940575-26940594 | Msa0016190:intron | 45.0% | |
| TCCCATCATGACCTTCTGTA+CGG | + | chr1_1:26940579-26940598 | None:intergenic | 45.0% | |
| TTGTGGAGTTGAAAATGGGG+AGG | - | chr1_1:26940780-26940799 | Msa0016190:CDS | 45.0% | |
| AGTATTCGTGGCTGCAAGTT+CGG | - | chr1_1:26940836-26940855 | Msa0016190:CDS | 45.0% | |
| !! | ATTTATGATAAAAAAAAATT+TGG | - | chr1_1:26939588-26939607 | Msa0016190:intron | 5.0% |
| !!! | AATTAAAAAAGTTTTTAATT+TGG | - | chr1_1:26940321-26940340 | Msa0016190:intron | 5.0% |
| !! | ATTTATGATAAAAAAAAATT+TGG | - | chr1_1:26939588-26939607 | Msa0016190:intron | 5.0% |
| !!! | AATTAAAAAAGTTTTTAATT+TGG | - | chr1_1:26940321-26940340 | Msa0016190:intron | 5.0% |
| CATGAGGAAGCCACTGAAGA+AGG | - | chr1_1:26939238-26939257 | Msa0016190:CDS | 50.0% | |
| CAAAGTGGCCATGGTGAAGA+AGG | - | chr1_1:26939712-26939731 | Msa0016190:intron | 50.0% | |
| !! | GGAGTGTGGAGGTTAGTTTG+AGG | - | chr1_1:26939974-26939993 | Msa0016190:CDS | 50.0% |
| ! | GATCTTGTTTGGGTGGTGGT+TGG | - | chr1_1:26940016-26940035 | Msa0016190:CDS | 50.0% |
| TTTGGTGAAGAACACAGCCC+CGG | - | chr1_1:26940621-26940640 | Msa0016190:intron | 50.0% | |
| TGAAAATGGGGAGGAAGCCA+TGG | - | chr1_1:26940789-26940808 | Msa0016190:CDS | 50.0% | |
| GCTGCAAGTTCGGTAAAGGT+TGG | - | chr1_1:26940846-26940865 | Msa0016190:CDS | 50.0% | |
| CATGAGGAAGCCACTGAAGA+AGG | - | chr1_1:26939238-26939257 | Msa0016190:CDS | 50.0% | |
| CAAAGTGGCCATGGTGAAGA+AGG | - | chr1_1:26939712-26939731 | Msa0016190:intron | 50.0% | |
| !! | GGAGTGTGGAGGTTAGTTTG+AGG | - | chr1_1:26939974-26939993 | Msa0016190:CDS | 50.0% |
| ! | GATCTTGTTTGGGTGGTGGT+TGG | - | chr1_1:26940016-26940035 | Msa0016190:CDS | 50.0% |
| TTTGGTGAAGAACACAGCCC+CGG | - | chr1_1:26940621-26940640 | Msa0016190:intron | 50.0% | |
| TGAAAATGGGGAGGAAGCCA+TGG | - | chr1_1:26940789-26940808 | Msa0016190:CDS | 50.0% | |
| GCTGCAAGTTCGGTAAAGGT+TGG | - | chr1_1:26940846-26940865 | Msa0016190:CDS | 50.0% | |
| ! | GGTGCTGAAGCCACTGAAGA+AGG | - | chr1_1:26939205-26939224 | Msa0016190:CDS | 55.0% |
| CGTGGCTGCAAGTTCGGTAA+AGG | - | chr1_1:26940842-26940861 | Msa0016190:CDS | 55.0% | |
| ! | GGTGCTGAAGCCACTGAAGA+AGG | - | chr1_1:26939205-26939224 | Msa0016190:CDS | 55.0% |
| CGTGGCTGCAAGTTCGGTAA+AGG | - | chr1_1:26940842-26940861 | Msa0016190:CDS | 55.0% | |
| GTGAAGAACACAGCCCCGGT+AGG | - | chr1_1:26940625-26940644 | Msa0016190:intron | 60.0% | |
| GTGAAGAACACAGCCCCGGT+AGG | - | chr1_1:26940625-26940644 | Msa0016190:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 26939041 | 26940979 | 26939041 | ID=Msa0016190;Name=Msa0016190 |
| chr1_1 | mRNA | 26939041 | 26940979 | 26939041 | ID=Msa0016190-mRNA-1;Parent=Msa0016190;Name=Msa0016190-mRNA-1;_AED=0.42;_eAED=0.42;_QI=0|0|0|1|1|1|6|0|299 |
| chr1_1 | exon | 26940977 | 26940979 | 26940977 | ID=Msa0016190-mRNA-1:exon:9057;Parent=Msa0016190-mRNA-1 |
| chr1_1 | exon | 26940677 | 26940878 | 26940677 | ID=Msa0016190-mRNA-1:exon:9056;Parent=Msa0016190-mRNA-1 |
| chr1_1 | exon | 26940197 | 26940315 | 26940197 | ID=Msa0016190-mRNA-1:exon:9055;Parent=Msa0016190-mRNA-1 |
| chr1_1 | exon | 26939849 | 26940122 | 26939849 | ID=Msa0016190-mRNA-1:exon:9054;Parent=Msa0016190-mRNA-1 |
| chr1_1 | exon | 26939378 | 26939436 | 26939378 | ID=Msa0016190-mRNA-1:exon:9053;Parent=Msa0016190-mRNA-1 |
| chr1_1 | exon | 26939041 | 26939283 | 26939041 | ID=Msa0016190-mRNA-1:exon:9052;Parent=Msa0016190-mRNA-1 |
| chr1_1 | CDS | 26940977 | 26940979 | 26940977 | ID=Msa0016190-mRNA-1:cds;Parent=Msa0016190-mRNA-1 |
| chr1_1 | CDS | 26940677 | 26940878 | 26940677 | ID=Msa0016190-mRNA-1:cds;Parent=Msa0016190-mRNA-1 |
| chr1_1 | CDS | 26940197 | 26940315 | 26940197 | ID=Msa0016190-mRNA-1:cds;Parent=Msa0016190-mRNA-1 |
| chr1_1 | CDS | 26939849 | 26940122 | 26939849 | ID=Msa0016190-mRNA-1:cds;Parent=Msa0016190-mRNA-1 |
| chr1_1 | CDS | 26939378 | 26939436 | 26939378 | ID=Msa0016190-mRNA-1:cds;Parent=Msa0016190-mRNA-1 |
| chr1_1 | CDS | 26939041 | 26939283 | 26939041 | ID=Msa0016190-mRNA-1:cds;Parent=Msa0016190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
