Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0016220 | KEH40802.1 | 82.121 | 330 | 22 | 3 | 34 | 359 | 87 | 383 | 0.0 | 530 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0016220 | sp|Q8L3W1|VRN1_ARATH | 23.446 | 354 | 230 | 13 | 19 | 357 | 6 | 333 | 4.94e-16 | 81.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0016220 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0016220 | MtrunA17_Chr1g0163141 | 86.420 | 162 | 18 | 2 | 31 | 188 | 7 | 168 | 3.65e-91 | 271 |
| Msa0016220 | MtrunA17_Chr1g0163131 | 43.094 | 362 | 147 | 9 | 1 | 359 | 1 | 306 | 4.92e-84 | 257 |
| Msa0016220 | MtrunA17_Chr6g0476181 | 75.316 | 158 | 30 | 2 | 34 | 188 | 1 | 152 | 1.35e-77 | 235 |
| Msa0016220 | MtrunA17_Chr1g0163101 | 59.893 | 187 | 50 | 3 | 5 | 188 | 5 | 169 | 9.81e-72 | 221 |
| Msa0016220 | MtrunA17_Chr1g0162161 | 62.112 | 161 | 34 | 4 | 34 | 188 | 3 | 142 | 8.86e-60 | 190 |
| Msa0016220 | MtrunA17_Chr6g0476171 | 77.451 | 102 | 22 | 1 | 258 | 359 | 145 | 245 | 6.66e-51 | 170 |
| Msa0016220 | MtrunA17_Chr1g0163081 | 58.333 | 156 | 39 | 4 | 34 | 186 | 5 | 137 | 1.38e-50 | 166 |
| Msa0016220 | MtrunA17_Chr1g0163161 | 56.552 | 145 | 42 | 3 | 47 | 188 | 1 | 127 | 4.69e-47 | 156 |
| Msa0016220 | MtrunA17_Chr1g0163121 | 53.459 | 159 | 42 | 4 | 33 | 188 | 9 | 138 | 4.17e-46 | 154 |
| Msa0016220 | MtrunA17_Chr1g0163201 | 27.226 | 393 | 199 | 13 | 35 | 359 | 19 | 392 | 7.75e-31 | 120 |
| Msa0016220 | MtrunA17_Chr1g0163231 | 28.986 | 345 | 156 | 12 | 23 | 358 | 13 | 277 | 3.13e-27 | 108 |
| Msa0016220 | MtrunA17_Chr1g0163261 | 25.575 | 348 | 176 | 11 | 19 | 358 | 9 | 281 | 1.14e-22 | 96.7 |
| Msa0016220 | MtrunA17_Chr1g0171611 | 34.568 | 162 | 99 | 2 | 23 | 183 | 13 | 168 | 3.86e-22 | 95.1 |
| Msa0016220 | MtrunA17_Chr1g0163251 | 41.060 | 151 | 79 | 5 | 28 | 173 | 14 | 159 | 1.00e-21 | 95.5 |
| Msa0016220 | MtrunA17_Chr1g0163181 | 27.139 | 339 | 178 | 10 | 28 | 358 | 14 | 291 | 4.88e-21 | 94.0 |
| Msa0016220 | MtrunA17_Chr1g0163181 | 33.775 | 151 | 85 | 6 | 211 | 359 | 292 | 429 | 4.49e-13 | 70.1 |
| Msa0016220 | MtrunA17_Chr1g0163241 | 38.028 | 142 | 80 | 4 | 35 | 170 | 23 | 162 | 1.34e-20 | 87.8 |
| Msa0016220 | MtrunA17_Chr1g0163221 | 25.000 | 356 | 187 | 11 | 13 | 356 | 5 | 292 | 2.70e-18 | 85.1 |
| Msa0016220 | MtrunA17_Chr1g0163191 | 39.815 | 108 | 60 | 3 | 28 | 130 | 14 | 121 | 3.75e-18 | 80.9 |
| Msa0016220 | MtrunA17_Chr4g0067431 | 25.779 | 353 | 183 | 14 | 9 | 344 | 5 | 295 | 4.43e-17 | 81.3 |
| Msa0016220 | MtrunA17_Chr1g0163111 | 44.318 | 88 | 45 | 3 | 273 | 359 | 144 | 228 | 2.45e-16 | 77.4 |
| Msa0016220 | MtrunA17_Chr3g0131891 | 33.951 | 162 | 87 | 5 | 13 | 167 | 13 | 161 | 8.49e-16 | 77.4 |
| Msa0016220 | MtrunA17_Chr1g0163151 | 40.860 | 93 | 51 | 2 | 267 | 359 | 133 | 221 | 1.65e-15 | 74.7 |
| Msa0016220 | MtrunA17_Chr7g0233571 | 36.842 | 133 | 73 | 4 | 11 | 132 | 2 | 134 | 1.73e-15 | 74.7 |
| Msa0016220 | MtrunA17_Chr5g0419201 | 30.882 | 136 | 85 | 3 | 19 | 145 | 16 | 151 | 2.00e-15 | 73.9 |
| Msa0016220 | MtrunA17_Chr1g0208771 | 24.324 | 333 | 186 | 10 | 35 | 358 | 13 | 288 | 6.53e-15 | 75.9 |
| Msa0016220 | MtrunA17_Chr3g0103171 | 38.400 | 125 | 65 | 5 | 35 | 153 | 6 | 124 | 1.04e-14 | 73.6 |
| Msa0016220 | MtrunA17_Chr3g0103151 | 35.507 | 138 | 75 | 6 | 17 | 148 | 10 | 139 | 2.13e-14 | 70.5 |
| Msa0016220 | MtrunA17_Chr6g0467351 | 38.298 | 94 | 54 | 3 | 16 | 105 | 12 | 105 | 7.32e-14 | 70.5 |
| Msa0016220 | MtrunA17_Chr7g0233561 | 29.947 | 187 | 113 | 5 | 12 | 192 | 11 | 185 | 1.14e-13 | 71.2 |
| Msa0016220 | MtrunA17_Chr8g0390841 | 24.363 | 353 | 196 | 14 | 17 | 358 | 37 | 329 | 1.41e-13 | 71.6 |
| Msa0016220 | MtrunA17_Chr1g0163061 | 39.362 | 94 | 53 | 2 | 16 | 105 | 12 | 105 | 3.66e-13 | 68.9 |
| Msa0016220 | MtrunA17_Chr7g0233531 | 42.000 | 100 | 47 | 4 | 34 | 122 | 1 | 100 | 6.51e-13 | 68.6 |
| Msa0016220 | MtrunA17_Chr3g0103191 | 35.036 | 137 | 75 | 6 | 10 | 140 | 3 | 131 | 4.50e-12 | 65.5 |
| Msa0016220 | MtrunA17_Chr1g0154101 | 30.120 | 166 | 104 | 5 | 18 | 171 | 178 | 343 | 6.43e-12 | 67.0 |
| Msa0016220 | MtrunA17_Chr7g0233541 | 42.697 | 89 | 45 | 3 | 34 | 116 | 1 | 89 | 1.93e-11 | 64.3 |
| Msa0016220 | MtrunA17_Chr3g0103181 | 32.331 | 133 | 85 | 3 | 10 | 139 | 3 | 133 | 3.88e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0016220 | AT3G18990.1 | 23.446 | 354 | 230 | 13 | 19 | 357 | 6 | 333 | 5.02e-17 | 81.6 |
| Msa0016220 | AT3G18990.2 | 22.727 | 352 | 235 | 11 | 19 | 357 | 6 | 333 | 5.83e-17 | 81.6 |
Find 55 sgRNAs with CRISPR-Local
Find 422 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGACCCATTTGGAAGTTTA+AGG | 0.139491 | 1_1:+26964244 | None:intergenic |
| ATGGAATATGCGGGCAATTT+TGG | 0.164513 | 1_1:-26959683 | Msa0016220:CDS |
| GAATTTACATGAGATGTTTA+AGG | 0.185675 | 1_1:-26959509 | Msa0016220:CDS |
| TTTGGAAGTTTAAGGGATAT+TGG | 0.281020 | 1_1:+26964252 | None:intergenic |
| TGCAACGCGGTGATGGTATT+TGG | 0.284893 | 1_1:-26964203 | Msa0016220:CDS |
| AGTTTAAGGGATATTGGATT+TGG | 0.337634 | 1_1:+26964258 | None:intergenic |
| GGAATTTCGTAGAGAGGTAT+TGG | 0.365580 | 1_1:-26964290 | Msa0016220:CDS |
| AAGAAGCATGGTATATTTAG+TGG | 0.374789 | 1_1:-26959353 | Msa0016220:CDS |
| AATCTGACCCTCCTTTGTAT+TGG | 0.385935 | 1_1:+26964124 | None:intergenic |
| ATGGTATTTGGCTTCAGAAT+TGG | 0.387348 | 1_1:-26964191 | Msa0016220:CDS |
| TATAATGAACATCTCGACTA+TGG | 0.388378 | 1_1:-26959278 | Msa0016220:CDS |
| GGTCAGCATGCAAAATGAAT+TGG | 0.396575 | 1_1:-26964227 | Msa0016220:CDS |
| TGACCCATTTGGAAGTTTAA+GGG | 0.399923 | 1_1:+26964245 | None:intergenic |
| GACAACACCAGTAAAAGATA+TGG | 0.416359 | 1_1:-26959702 | Msa0016220:CDS |
| ATTCAGTGGAGTTGAGAGTA+GGG | 0.448522 | 1_1:-26959328 | Msa0016220:CDS |
| ATATCCCTTAAACTTCCAAA+TGG | 0.449227 | 1_1:-26964249 | Msa0016220:CDS |
| TGGAGACACTTGCTTGTTTG+AGG | 0.451137 | 1_1:-26959204 | Msa0016220:CDS |
| TGCTTCTTCAACAGCTCACT+TGG | 0.461685 | 1_1:+26959368 | None:intergenic |
| GACTATGGTTGGTTCACTAA+AGG | 0.474605 | 1_1:-26959263 | Msa0016220:CDS |
| TACCTCTCTACGAAATTCCT+TGG | 0.476007 | 1_1:+26964294 | None:intergenic |
| TGAGAGTAGGGGAAGGAACA+TGG | 0.483751 | 1_1:-26959316 | Msa0016220:CDS |
| AGTGAAACTAGGACTCTCAT+TGG | 0.512039 | 1_1:+26963460 | None:intergenic |
| AGTAGCAATGCCATTTGAGT+TGG | 0.513443 | 1_1:+26963924 | None:intergenic |
| AGAGATTGCAAAGTAAAGAC+TGG | 0.515563 | 1_1:-26959224 | Msa0016220:CDS |
| AATTCAGTGGAGTTGAGAGT+AGG | 0.518002 | 1_1:-26959329 | Msa0016220:CDS |
| TATCCCTTAAACTTCCAAAT+GGG | 0.521322 | 1_1:-26964248 | Msa0016220:CDS |
| TGTGCAAAATCATGTGTTCA+AGG | 0.521657 | 1_1:-26959174 | Msa0016220:CDS |
| TTCAGTGGAGTTGAGAGTAG+GGG | 0.529294 | 1_1:-26959327 | Msa0016220:CDS |
| ATGAACATCTCGACTATGGT+TGG | 0.544359 | 1_1:-26959274 | Msa0016220:CDS |
| GTCAGCATGCAAAATGAATT+GGG | 0.544595 | 1_1:-26964226 | Msa0016220:CDS |
| ACTACTGCTGCCACACCTCA+AGG | 0.545739 | 1_1:-26963904 | Msa0016220:CDS |
| GTGAAACTAGGACTCTCATT+GGG | 0.547777 | 1_1:+26963461 | None:intergenic |
| TATATTTAGTGGAAATTCAG+TGG | 0.549056 | 1_1:-26959342 | Msa0016220:CDS |
| TTTGGCTTCAGAATTGGAAG+AGG | 0.566576 | 1_1:-26964185 | Msa0016220:CDS |
| GTAAAAGATATGGAATATGC+GGG | 0.570556 | 1_1:-26959692 | Msa0016220:CDS |
| AGAATTGGAAGAGGTTTGCA+TGG | 0.571811 | 1_1:-26964176 | Msa0016220:CDS |
| ATGGTTGGTTCACTAAAGGT+TGG | 0.573713 | 1_1:-26959259 | Msa0016220:CDS |
| TTGTGAATGTTAGTCCCTTG+AGG | 0.574624 | 1_1:+26963889 | None:intergenic |
| AATTGGGTGCAACGCGGTGA+TGG | 0.587564 | 1_1:-26964210 | Msa0016220:CDS |
| TGTGCTTGCAGATGATTCCA+AGG | 0.587783 | 1_1:-26964311 | Msa0016220:intron |
| GCAGAGGCTAATGGAAACAC+AGG | 0.596384 | 1_1:-26963548 | Msa0016220:intron |
| TTTGCATGGTCGCTCCGATG+TGG | 0.602338 | 1_1:-26964162 | Msa0016220:CDS |
| AGTAAAAGATATGGAATATG+CGG | 0.604042 | 1_1:-26959693 | Msa0016220:CDS |
| TTCCAAGGAATTTCGTAGAG+AGG | 0.604264 | 1_1:-26964296 | Msa0016220:CDS |
| GAGCGTGGTAGTGAAGCTAA+AGG | 0.613987 | 1_1:-26965178 | Msa0016220:CDS |
| AGTGAGCTGTTGAAGAAGCA+TGG | 0.617628 | 1_1:-26959365 | Msa0016220:CDS |
| CTACTGCTGCCACACCTCAA+GGG | 0.625889 | 1_1:-26963903 | Msa0016220:CDS |
| GTGGAGTTGAGAGTAGGGGA+AGG | 0.647557 | 1_1:-26959323 | Msa0016220:CDS |
| GAACAACACGGCAATGAGCG+TGG | 0.647962 | 1_1:-26965193 | Msa0016220:CDS |
| AATGTTAGTCCCTTGAGGTG+TGG | 0.655297 | 1_1:+26963894 | None:intergenic |
| AAACTAAAAGATCTCCACAT+CGG | 0.700040 | 1_1:+26964148 | None:intergenic |
| GAGGCTAATGGAAACACAGG+AGG | 0.702704 | 1_1:-26963545 | Msa0016220:CDS |
| TGGACATGTGCAGAAAACCA+AGG | 0.707757 | 1_1:-26959743 | Msa0016220:intron |
| AGCATGTGGTTTGAACAACA+CGG | 0.751745 | 1_1:-26965205 | Msa0016220:CDS |
| AAAATGAATTGGGTGCAACG+CGG | 0.811094 | 1_1:-26964216 | Msa0016220:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTTATTGAATAATAAAAAT+GGG | + | chr1_1:26959442-26959461 | None:intergenic | 10.0% |
| !! | AGTTTATTGAATAATAAAAA+TGG | + | chr1_1:26959443-26959462 | None:intergenic | 10.0% |
| !! | TGTTTGTAATAAATAAATTA+AGG | + | chr1_1:26963831-26963850 | None:intergenic | 10.0% |
| !!! | TAAAATATACAAATTTTTCA+AGG | - | chr1_1:26964396-26964415 | Msa0016220:intron | 10.0% |
| !!! | TTCAATCTACATTAATATTT+TGG | - | chr1_1:26959395-26959414 | Msa0016220:intron | 15.0% |
| !!! | TCAATCTACATTAATATTTT+GGG | - | chr1_1:26959396-26959415 | Msa0016220:intron | 15.0% |
| !! | TATAATTTCTTTGATTCTAT+TGG | - | chr1_1:26959556-26959575 | Msa0016220:intron | 15.0% |
| !!! | AAAATTTTAGGTTGAAAAAT+GGG | + | chr1_1:26959676-26959695 | None:intergenic | 15.0% |
| !! | AAAACAAACATTATCATTAA+TGG | - | chr1_1:26959703-26959722 | Msa0016220:CDS | 15.0% |
| !! | TAAACAGATGAATAAATAAA+AGG | + | chr1_1:26960556-26960575 | None:intergenic | 15.0% |
| !! | TTTATTTATTCATCTGTTTA+TGG | - | chr1_1:26960556-26960575 | Msa0016220:intron | 15.0% |
| !! | TTATTTATTCATCTGTTTAT+GGG | - | chr1_1:26960557-26960576 | Msa0016220:intron | 15.0% |
| !!! | CAAATGTGTAAAATATTTTA+AGG | - | chr1_1:26963262-26963281 | Msa0016220:intron | 15.0% |
| !!! | ATATTTTAAGGTTTAAATCT+TGG | - | chr1_1:26963274-26963293 | Msa0016220:intron | 15.0% |
| !!! | CTATTTTATTTTACAGTTAT+TGG | + | chr1_1:26964213-26964232 | None:intergenic | 15.0% |
| !!! | CTAAGATTAATTTTTATACA+TGG | - | chr1_1:26964455-26964474 | Msa0016220:intron | 15.0% |
| !! | ACAGATAGTAATACATAAAT+GGG | + | chr1_1:26959298-26959317 | None:intergenic | 20.0% |
| !! | TACAGATAGTAATACATAAA+TGG | + | chr1_1:26959299-26959318 | None:intergenic | 20.0% |
| !!! | CAAAATTTTAGGTTGAAAAA+TGG | + | chr1_1:26959677-26959696 | None:intergenic | 20.0% |
| !!! | GTTTTTAGTGTCAAAATTTT+AGG | + | chr1_1:26959688-26959707 | None:intergenic | 20.0% |
| !! | AACATTATCATTAATGGAAT+TGG | - | chr1_1:26959709-26959728 | Msa0016220:CDS | 20.0% |
| !! | TGATTGAATAATGAAAACTA+AGG | + | chr1_1:26959963-26959982 | None:intergenic | 20.0% |
| !! | AAAACCAATGAGTATAAATT+TGG | + | chr1_1:26960025-26960044 | None:intergenic | 20.0% |
| !!! | ATTTGTATGGATTAAAAAGT+GGG | + | chr1_1:26960642-26960661 | None:intergenic | 20.0% |
| !!! | AATTTGTATGGATTAAAAAG+TGG | + | chr1_1:26960643-26960662 | None:intergenic | 20.0% |
| !!! | ATGTACTTATGTAATTTGTA+TGG | + | chr1_1:26960655-26960674 | None:intergenic | 20.0% |
| !! | AGAATATACGTAAATAAAGT+GGG | + | chr1_1:26960693-26960712 | None:intergenic | 20.0% |
| !! | AAGAATATACGTAAATAAAG+TGG | + | chr1_1:26960694-26960713 | None:intergenic | 20.0% |
| !!! | AACTATTTTAAGCATTTGAA+AGG | + | chr1_1:26960783-26960802 | None:intergenic | 20.0% |
| !! | AAATTGCCTAGAAAAATTAT+CGG | - | chr1_1:26962017-26962036 | Msa0016220:intron | 20.0% |
| !! | TTCTATCAAAAACATATTCA+TGG | - | chr1_1:26962628-26962647 | Msa0016220:intron | 20.0% |
| !!! | GAGAAAGAAGTTTATTTTAA+TGG | + | chr1_1:26963805-26963824 | None:intergenic | 20.0% |
| !! | AAAGAAAACAACATAGTTTA+AGG | + | chr1_1:26964803-26964822 | None:intergenic | 20.0% |
| !!! | GGGTTAGTTTATACTTTATA+GGG | + | chr1_1:26959278-26959297 | None:intergenic | 25.0% |
| !!! | TGGGTTAGTTTATACTTTAT+AGG | + | chr1_1:26959279-26959298 | None:intergenic | 25.0% |
| ! | TTACTAGACTTTATTCTTTC+TGG | - | chr1_1:26959350-26959369 | Msa0016220:CDS | 25.0% |
| ! | AACATGATCAATACAGTATT+GGG | + | chr1_1:26959844-26959863 | None:intergenic | 25.0% |
| ! | AAACATGATCAATACAGTAT+TGG | + | chr1_1:26959845-26959864 | None:intergenic | 25.0% |
| ! | CAATCCAAATTTATACTCAT+TGG | - | chr1_1:26960018-26960037 | Msa0016220:intron | 25.0% |
| !!! | CTTTTAGTTTTCCAATACAA+AGG | - | chr1_1:26960227-26960246 | Msa0016220:intron | 25.0% |
| !! | CAAAATTTGAGATGAACTAA+GGG | + | chr1_1:26960604-26960623 | None:intergenic | 25.0% |
| !!! | TAGTTTTTAAAGTTTTGCAG+AGG | - | chr1_1:26960798-26960817 | Msa0016220:intron | 25.0% |
| ! | TATTACAGAAAAAGTAGTAC+AGG | + | chr1_1:26960978-26960997 | None:intergenic | 25.0% |
| ! | TATTAACAAGAGAGTCATTT+GGG | + | chr1_1:26961079-26961098 | None:intergenic | 25.0% |
| ! | AACAGAAAACTGTTAGTAAT+AGG | - | chr1_1:26961120-26961139 | Msa0016220:intron | 25.0% |
| ! | GTATTATAAATAAGATGCAG+AGG | - | chr1_1:26961265-26961284 | Msa0016220:intron | 25.0% |
| ! | GTATTATAAATAAGATGCAG+AGG | - | chr1_1:26961265-26961284 | Msa0016220:intron | 25.0% |
| ! | TTGAAGATCAAAATAACTAG+CGG | - | chr1_1:26962720-26962739 | Msa0016220:intron | 25.0% |
| ! | ATAGTAATTGTGAATGAAAG+TGG | + | chr1_1:26963083-26963102 | None:intergenic | 25.0% |
| !! | TTTGATTGATTGTAGTTTGT+TGG | + | chr1_1:26963246-26963265 | None:intergenic | 25.0% |
| ! | ATGTTAATGTTACTGTCATT+AGG | - | chr1_1:26963425-26963444 | Msa0016220:intron | 25.0% |
| ! | TGTTAATGTTACTGTCATTA+GGG | - | chr1_1:26963426-26963445 | Msa0016220:intron | 25.0% |
| !!! | ATTGTCATGTTTACCTTTTT+TGG | - | chr1_1:26963759-26963778 | Msa0016220:intron | 25.0% |
| ! | GAGATATGAAAATCCAAAAA+AGG | + | chr1_1:26963775-26963794 | None:intergenic | 25.0% |
| ! | AATAGAAAAAATGACTGATG+TGG | - | chr1_1:26964228-26964247 | Msa0016220:CDS | 25.0% |
| ! | TTAAACACACTATCATCTAT+TGG | + | chr1_1:26964255-26964274 | None:intergenic | 25.0% |
| !! | AATAGATGATAGTGTGTTTA+AGG | - | chr1_1:26964254-26964273 | Msa0016220:CDS | 25.0% |
| !! | ATAGATGATAGTGTGTTTAA+GGG | - | chr1_1:26964255-26964274 | Msa0016220:CDS | 25.0% |
| !!! | GATTTTAGTCATTCTAATGA+TGG | - | chr1_1:26964320-26964339 | Msa0016220:intron | 25.0% |
| ! | AGTAAAAGATATGGAATATG+CGG | - | chr1_1:26964669-26964688 | Msa0016220:intron | 25.0% |
| !!! | CACAAAAACACATTGTTTTA+GGG | - | chr1_1:26964723-26964742 | Msa0016220:intron | 25.0% |
| !!! | ACAAAAACACATTGTTTTAG+GGG | - | chr1_1:26964724-26964743 | Msa0016220:intron | 25.0% |
| ! | GAATTTACATGAGATGTTTA+AGG | - | chr1_1:26964853-26964872 | Msa0016220:intron | 25.0% |
| !! | TTTTATAACATCATCAGACA+AGG | - | chr1_1:26964877-26964896 | Msa0016220:intron | 25.0% |
| ! | TTTGTTCATATATATGCAGT+TGG | - | chr1_1:26964963-26964982 | Msa0016220:intron | 25.0% |
| ! | TATATTTAGTGGAAATTCAG+TGG | - | chr1_1:26965020-26965039 | Msa0016220:intron | 25.0% |
| ATTCTATTGGACTTAAGATG+TGG | - | chr1_1:26959569-26959588 | Msa0016220:intron | 30.0% | |
| AAACAGTCTACTTAAAGAGT+TGG | + | chr1_1:26959789-26959808 | None:intergenic | 30.0% | |
| CTCTTTAAGTAGACTGTTTA+AGG | - | chr1_1:26959790-26959809 | Msa0016220:intron | 30.0% | |
| ACATGATCAATACAGTATTG+GGG | + | chr1_1:26959843-26959862 | None:intergenic | 30.0% | |
| ! | GTTTTCTGTTGCAAAATGTT+TGG | - | chr1_1:26959861-26959880 | Msa0016220:intron | 30.0% |
| AGTTTAAGGGATATTGGATT+TGG | + | chr1_1:26960107-26960126 | None:intergenic | 30.0% | |
| TTTGGAAGTTTAAGGGATAT+TGG | + | chr1_1:26960113-26960132 | None:intergenic | 30.0% | |
| ATATCCCTTAAACTTCCAAA+TGG | - | chr1_1:26960113-26960132 | Msa0016220:intron | 30.0% | |
| TATCCCTTAAACTTCCAAAT+GGG | - | chr1_1:26960114-26960133 | Msa0016220:intron | 30.0% | |
| AAACTAAAAGATCTCCACAT+CGG | + | chr1_1:26960217-26960236 | None:intergenic | 30.0% | |
| !! | TTAGTTTTCCAATACAAAGG+AGG | - | chr1_1:26960230-26960249 | Msa0016220:intron | 30.0% |
| ! | TAGTTTTCCAATACAAAGGA+GGG | - | chr1_1:26960231-26960250 | Msa0016220:intron | 30.0% |
| !! | TTTGTATTTTCAGTGTCACT+AGG | + | chr1_1:26960395-26960414 | None:intergenic | 30.0% |
| AAAAAGAGAACCAACTCAAA+TGG | - | chr1_1:26960428-26960447 | Msa0016220:intron | 30.0% | |
| ! | CCAAAATTTGAGATGAACTA+AGG | + | chr1_1:26960605-26960624 | None:intergenic | 30.0% |
| ! | CCTTAGTTCATCTCAAATTT+TGG | - | chr1_1:26960602-26960621 | Msa0016220:intron | 30.0% |
| GATAATTTGACAGTGAAACT+AGG | + | chr1_1:26960916-26960935 | None:intergenic | 30.0% | |
| TTATCACCTTCAACATGATA+TGG | + | chr1_1:26960940-26960959 | None:intergenic | 30.0% | |
| TGTTGAAGGTGATAATAGAT+TGG | - | chr1_1:26960945-26960964 | Msa0016220:intron | 30.0% | |
| TCAATACATTCAGTTCCTAT+AGG | + | chr1_1:26961041-26961060 | None:intergenic | 30.0% | |
| ATTAACAAGAGAGTCATTTG+GGG | + | chr1_1:26961078-26961097 | None:intergenic | 30.0% | |
| CTATTAACAAGAGAGTCATT+TGG | + | chr1_1:26961080-26961099 | None:intergenic | 30.0% | |
| TTGATATCAGTTTCTATCAC+TGG | - | chr1_1:26961421-26961440 | Msa0016220:intron | 30.0% | |
| ! | AAATTTGCACAGATCTGTTT+TGG | + | chr1_1:26961937-26961956 | None:intergenic | 30.0% |
| TATTCTTTCGAAAACCAACT+AGG | + | chr1_1:26962873-26962892 | None:intergenic | 30.0% | |
| TACATGAATGAGTTATTGCA+AGG | - | chr1_1:26962891-26962910 | Msa0016220:intron | 30.0% | |
| ACATGAATGAGTTATTGCAA+GGG | - | chr1_1:26962892-26962911 | Msa0016220:intron | 30.0% | |
| ACGCAATAAAATAGAGCTTA+GGG | + | chr1_1:26963392-26963411 | None:intergenic | 30.0% | |
| AACGCAATAAAATAGAGCTT+AGG | + | chr1_1:26963393-26963412 | None:intergenic | 30.0% | |
| ! | TAAGCTCTATTTTATTGCGT+TGG | - | chr1_1:26963392-26963411 | Msa0016220:intron | 30.0% |
| ! | CGTTGAACAAGTATTTGTTA+CGG | + | chr1_1:26963491-26963510 | None:intergenic | 30.0% |
| CGTAACAAATACTTGTTCAA+CGG | - | chr1_1:26963489-26963508 | Msa0016220:CDS | 30.0% | |
| AAATCAGTTTCACATGGTTT+GGG | - | chr1_1:26963546-26963565 | Msa0016220:CDS | 30.0% | |
| AAACAACACTAATAAGTGGA+CGG | + | chr1_1:26963618-26963637 | None:intergenic | 30.0% | |
| ACACAAACAACACTAATAAG+TGG | + | chr1_1:26963622-26963641 | None:intergenic | 30.0% | |
| ! | GCATATTCCATATCTTTTAC+TGG | + | chr1_1:26964670-26964689 | None:intergenic | 30.0% |
| GTAAAAGATATGGAATATGC+GGG | - | chr1_1:26964670-26964689 | Msa0016220:intron | 30.0% | |
| !! | ATTTTGGAGATGGAATTTCA+AGG | - | chr1_1:26964695-26964714 | Msa0016220:intron | 30.0% |
| ! | GCACAAAAACACATTGTTTT+AGG | - | chr1_1:26964722-26964741 | Msa0016220:intron | 30.0% |
| ! | AAGAAGCATGGTATATTTAG+TGG | - | chr1_1:26965009-26965028 | Msa0016220:intron | 30.0% |
| TATAATGAACATCTCGACTA+TGG | - | chr1_1:26965084-26965103 | Msa0016220:intron | 30.0% | |
| ! | CATGATCAATACAGTATTGG+GGG | + | chr1_1:26959842-26959861 | None:intergenic | 35.0% |
| CTGTTGCAAAATGTTTGGTA+TGG | - | chr1_1:26959866-26959885 | Msa0016220:intron | 35.0% | |
| TTACACATAGAGAGAACAGA+AGG | + | chr1_1:26959906-26959925 | None:intergenic | 35.0% | |
| GTGTAATATTCCCACATATC+TGG | - | chr1_1:26959920-26959939 | Msa0016220:intron | 35.0% | |
| TGACCCATTTGGAAGTTTAA+GGG | + | chr1_1:26960120-26960139 | None:intergenic | 35.0% | |
| GTCAGCATGCAAAATGAATT+GGG | - | chr1_1:26960136-26960155 | Msa0016220:intron | 35.0% | |
| ! | ATGGTATTTGGCTTCAGAAT+TGG | - | chr1_1:26960171-26960190 | Msa0016220:intron | 35.0% |
| !! | AGTTGGTTCTCTTTTTCTTG+AGG | + | chr1_1:26960424-26960443 | None:intergenic | 35.0% |
| TGCAACCCAGCAAAAAATTT+CGG | - | chr1_1:26960514-26960533 | Msa0016220:intron | 35.0% | |
| !!! | CTTACCCGAAATTTTTTGCT+GGG | + | chr1_1:26960522-26960541 | None:intergenic | 35.0% |
| !!! | ACTTACCCGAAATTTTTTGC+TGG | + | chr1_1:26960523-26960542 | None:intergenic | 35.0% |
| ! | TAAAGTTTTGCAGAGGCTAA+TGG | - | chr1_1:26960805-26960824 | Msa0016220:intron | 35.0% |
| TTATCGCCATATCATGTTGA+AGG | - | chr1_1:26960931-26960950 | Msa0016220:intron | 35.0% | |
| ! | AGAGGCTTTCATTTTCCTAT+AGG | - | chr1_1:26961023-26961042 | Msa0016220:intron | 35.0% |
| TGTTAGTAATAGGACTCCTA+AGG | - | chr1_1:26961130-26961149 | Msa0016220:intron | 35.0% | |
| GTTAGTAATAGGACTCCTAA+GGG | - | chr1_1:26961131-26961150 | Msa0016220:intron | 35.0% | |
| TATCTATAACTTCTGCCCTT+AGG | + | chr1_1:26961149-26961168 | None:intergenic | 35.0% | |
| GCAGAAGTTATAGATACTAG+TGG | - | chr1_1:26961153-26961172 | Msa0016220:intron | 35.0% | |
| GACTTCTATGTAACAGCTAT+AGG | - | chr1_1:26961237-26961256 | Msa0016220:intron | 35.0% | |
| TAAGATGCAGAGGAAAAGAA+AGG | - | chr1_1:26961275-26961294 | Msa0016220:intron | 35.0% | |
| ATTGGGATAAAGGATAGGTA+GGG | - | chr1_1:26961307-26961326 | Msa0016220:intron | 35.0% | |
| AGGGAAAGAAATTCACAGTA+GGG | - | chr1_1:26961464-26961483 | Msa0016220:intron | 35.0% | |
| !! | TGAGAAACATTTTGATGTCG+TGG | - | chr1_1:26961548-26961567 | Msa0016220:intron | 35.0% |
| !! | GAGAAACATTTTGATGTCGT+GGG | - | chr1_1:26961549-26961568 | Msa0016220:intron | 35.0% |
| TAGAGACCTTCTACCTATAT+CGG | - | chr1_1:26961719-26961738 | Msa0016220:intron | 35.0% | |
| GATCAGTTTCTTCTGATTGA+AGG | + | chr1_1:26961800-26961819 | None:intergenic | 35.0% | |
| CAATCAGAAGAAACTGATCA+AGG | - | chr1_1:26961801-26961820 | Msa0016220:intron | 35.0% | |
| TTCCACAATGATGACATTCA+TGG | + | chr1_1:26961901-26961920 | None:intergenic | 35.0% | |
| ACAGATCTGTGCAAATTTCT+TGG | - | chr1_1:26961939-26961958 | Msa0016220:intron | 35.0% | |
| ! | GACAGACTCTTTTATGAACA+TGG | - | chr1_1:26961966-26961985 | Msa0016220:intron | 35.0% |
| CCTAGAAAAATTATCGGAGA+GGG | - | chr1_1:26962023-26962042 | Msa0016220:intron | 35.0% | |
| AAAAATTATCGGAGAGGGAT+GGG | - | chr1_1:26962028-26962047 | Msa0016220:intron | 35.0% | |
| ! | TGTCACTCTACTTCAAGTTA+TGG | - | chr1_1:26962237-26962256 | Msa0016220:intron | 35.0% |
| ! | GTCACTCTACTTCAAGTTAT+GGG | - | chr1_1:26962238-26962257 | Msa0016220:intron | 35.0% |
| TTATGTTATCCTTCACCTTG+AGG | - | chr1_1:26962275-26962294 | Msa0016220:intron | 35.0% | |
| TGTTAGTAATAGGACTCCTA+AGG | - | chr1_1:26961130-26961149 | Msa0016220:intron | 35.0% | |
| GTTAGTAATAGGACTCCTAA+GGG | - | chr1_1:26961131-26961150 | Msa0016220:intron | 35.0% | |
| TATCTATAACTTCTGCCCTT+AGG | + | chr1_1:26961149-26961168 | None:intergenic | 35.0% | |
| GCAGAAGTTATAGATACTAG+TGG | - | chr1_1:26961153-26961172 | Msa0016220:intron | 35.0% | |
| GACTTCTATGTAACAGCTAT+AGG | - | chr1_1:26961237-26961256 | Msa0016220:intron | 35.0% | |
| TAAGATGCAGAGGAAAAGAA+AGG | - | chr1_1:26961275-26961294 | Msa0016220:intron | 35.0% | |
| ATTGGGATAAAGGATAGGTA+GGG | - | chr1_1:26961307-26961326 | Msa0016220:intron | 35.0% | |
| TTCGAAAACCAACTAGGTAT+CGG | + | chr1_1:26962867-26962886 | None:intergenic | 35.0% | |
| ! | AAGGCAACAATTAGAAGTGT+TGG | - | chr1_1:26962915-26962934 | Msa0016220:intron | 35.0% |
| !! | AACAATTAGAAGTGTTGGTG+AGG | - | chr1_1:26962920-26962939 | Msa0016220:intron | 35.0% |
| ! | CAAGAGCAGTTTTCTAATGA+GGG | - | chr1_1:26962980-26962999 | Msa0016220:intron | 35.0% |
| !! | AGGTTGGAAGTCATTTTCAA+AGG | - | chr1_1:26963004-26963023 | Msa0016220:intron | 35.0% |
| ! | AAGGAACATGAGTTGAAAGT+TGG | - | chr1_1:26963023-26963042 | Msa0016220:intron | 35.0% |
| TACTATTATCCCAACCACAA+AGG | - | chr1_1:26963097-26963116 | Msa0016220:intron | 35.0% | |
| GCAATAAAATAGAGCTTAGG+GGG | + | chr1_1:26963390-26963409 | None:intergenic | 35.0% | |
| CGCAATAAAATAGAGCTTAG+GGG | + | chr1_1:26963391-26963410 | None:intergenic | 35.0% | |
| ! | AGTATTTGTTACGGTTACGT+CGG | + | chr1_1:26963482-26963501 | None:intergenic | 35.0% |
| ACAAATACTTGTTCAACGGT+CGG | - | chr1_1:26963493-26963512 | Msa0016220:CDS | 35.0% | |
| TGAGACAAATCAGTTTCACA+TGG | - | chr1_1:26963540-26963559 | Msa0016220:CDS | 35.0% | |
| CAAATCAGTTTCACATGGTT+TGG | - | chr1_1:26963545-26963564 | Msa0016220:CDS | 35.0% | |
| TTCTGTCAAAATGGAATGAG+CGG | - | chr1_1:26963583-26963602 | Msa0016220:intron | 35.0% | |
| AACAACACTAATAAGTGGAC+GGG | + | chr1_1:26963617-26963636 | None:intergenic | 35.0% | |
| ACATACATTGAACAGTGTGT+AGG | + | chr1_1:26963706-26963725 | None:intergenic | 35.0% | |
| AGAGAGAAGAAACAAGAACA+GGG | - | chr1_1:26963883-26963902 | Msa0016220:CDS | 35.0% | |
| CTAAAAGTGATATATCTGCG+AGG | - | chr1_1:26964486-26964505 | Msa0016220:intron | 35.0% | |
| ! | GTGTTGTCTCTGATTTTTCT+TGG | + | chr1_1:26964648-26964667 | None:intergenic | 35.0% |
| GACAACACCAGTAAAAGATA+TGG | - | chr1_1:26964660-26964679 | Msa0016220:intron | 35.0% | |
| CACACACATAGCTATATACA+TGG | + | chr1_1:26964927-26964946 | None:intergenic | 35.0% | |
| AGAGATTGCAAAGTAAAGAC+TGG | - | chr1_1:26965138-26965157 | Msa0016220:CDS | 35.0% | |
| TGTGCAAAATCATGTGTTCA+AGG | - | chr1_1:26965188-26965207 | Msa0016220:CDS | 35.0% | |
| GAGAGAACAGAAGGCAAAAA+TGG | + | chr1_1:26959897-26959916 | None:intergenic | 40.0% | |
| CCTAAGCAAACCAGATATGT+GGG | + | chr1_1:26959933-26959952 | None:intergenic | 40.0% | |
| ACCTAAGCAAACCAGATATG+TGG | + | chr1_1:26959934-26959953 | None:intergenic | 40.0% | |
| TTCCAAGGAATTTCGTAGAG+AGG | - | chr1_1:26960066-26960085 | Msa0016220:intron | 40.0% | |
| TACCTCTCTACGAAATTCCT+TGG | + | chr1_1:26960071-26960090 | None:intergenic | 40.0% | |
| ! | GGAATTTCGTAGAGAGGTAT+TGG | - | chr1_1:26960072-26960091 | Msa0016220:intron | 40.0% |
| CTGACCCATTTGGAAGTTTA+AGG | + | chr1_1:26960121-26960140 | None:intergenic | 40.0% | |
| ! | ATTTTGCATGCTGACCCATT+TGG | + | chr1_1:26960131-26960150 | None:intergenic | 40.0% |
| GGTCAGCATGCAAAATGAAT+TGG | - | chr1_1:26960135-26960154 | Msa0016220:intron | 40.0% | |
| AAAATGAATTGGGTGCAACG+CGG | - | chr1_1:26960146-26960165 | Msa0016220:intron | 40.0% | |
| ! | TTTGGCTTCAGAATTGGAAG+AGG | - | chr1_1:26960177-26960196 | Msa0016220:intron | 40.0% |
| AGAATTGGAAGAGGTTTGCA+TGG | - | chr1_1:26960186-26960205 | Msa0016220:intron | 40.0% | |
| AATCTGACCCTCCTTTGTAT+TGG | + | chr1_1:26960241-26960260 | None:intergenic | 40.0% | |
| ! | AGTAGCAATGCCATTTGAGT+TGG | + | chr1_1:26960441-26960460 | None:intergenic | 40.0% |
| TTGTGAATGTTAGTCCCTTG+AGG | + | chr1_1:26960476-26960495 | None:intergenic | 40.0% | |
| GCAACCCAGCAAAAAATTTC+GGG | - | chr1_1:26960515-26960534 | Msa0016220:intron | 40.0% | |
| GTGAAACTAGGACTCTCATT+GGG | + | chr1_1:26960904-26960923 | None:intergenic | 40.0% | |
| AGTGAAACTAGGACTCTCAT+TGG | + | chr1_1:26960905-26960924 | None:intergenic | 40.0% | |
| !! | AGAGGAAAAGAAAGGCATTC+AGG | - | chr1_1:26961283-26961302 | Msa0016220:intron | 40.0% |
| !! | GAGGAAAAGAAAGGCATTCA+GGG | - | chr1_1:26961284-26961303 | Msa0016220:intron | 40.0% |
| !! | AAAGAAAGGCATTCAGGGAT+TGG | - | chr1_1:26961289-26961308 | Msa0016220:intron | 40.0% |
| !! | AAGAAAGGCATTCAGGGATT+GGG | - | chr1_1:26961290-26961309 | Msa0016220:intron | 40.0% |
| GATTGGGATAAAGGATAGGT+AGG | - | chr1_1:26961306-26961325 | Msa0016220:intron | 40.0% | |
| AGACCAAGCTCTTGAATTCT+TGG | - | chr1_1:26961332-26961351 | Msa0016220:intron | 40.0% | |
| CAAGCTCTTGAATTCTTGGA+GGG | - | chr1_1:26961336-26961355 | Msa0016220:intron | 40.0% | |
| AAGCTCTTGAATTCTTGGAG+GGG | - | chr1_1:26961337-26961356 | Msa0016220:intron | 40.0% | |
| ACCAAGACTCTCGAATTTCT+TGG | - | chr1_1:26961365-26961384 | Msa0016220:intron | 40.0% | |
| CCAAGACTCTCGAATTTCTT+GGG | - | chr1_1:26961366-26961385 | Msa0016220:intron | 40.0% | |
| CTACTGTGAATTTCTTTCCC+TGG | + | chr1_1:26961465-26961484 | None:intergenic | 40.0% | |
| CAGGGAAAGAAATTCACAGT+AGG | - | chr1_1:26961463-26961482 | Msa0016220:intron | 40.0% | |
| GGGAAAGAAATTCACAGTAG+GGG | - | chr1_1:26961465-26961484 | Msa0016220:intron | 40.0% | |
| GGAAAGAAATTCACAGTAGG+GGG | - | chr1_1:26961466-26961485 | Msa0016220:intron | 40.0% | |
| GAAAGAAATTCACAGTAGGG+GGG | - | chr1_1:26961467-26961486 | Msa0016220:intron | 40.0% | |
| ATGGACATGCCACAATTTGA+CGG | - | chr1_1:26961492-26961511 | Msa0016220:intron | 40.0% | |
| CGTTTCACGTTGCATTCATT+TGG | - | chr1_1:26961679-26961698 | Msa0016220:intron | 40.0% | |
| CTTCATCCGATATAGGTAGA+AGG | + | chr1_1:26961728-26961747 | None:intergenic | 40.0% | |
| ACCTATATCGGATGAAGAAG+AGG | - | chr1_1:26961731-26961750 | Msa0016220:intron | 40.0% | |
| TCCTCTTCTTCATCCGATAT+AGG | + | chr1_1:26961735-26961754 | None:intergenic | 40.0% | |
| TGAAGAAGAGGAATCTGGAT+TGG | - | chr1_1:26961743-26961762 | Msa0016220:intron | 40.0% | |
| ! | AAGAGGAATCTGGATTGGAA+TGG | - | chr1_1:26961748-26961767 | Msa0016220:intron | 40.0% |
| ! | AGAGGAATCTGGATTGGAAT+GGG | - | chr1_1:26961749-26961768 | Msa0016220:intron | 40.0% |
| GGTAGAGAATGCAGAAGAAA+TGG | - | chr1_1:26961860-26961879 | Msa0016220:intron | 40.0% | |
| CACAATGATGACATTCATGG+AGG | + | chr1_1:26961898-26961917 | None:intergenic | 40.0% | |
| CTCCATGAATGTCATCATTG+TGG | - | chr1_1:26961896-26961915 | Msa0016220:intron | 40.0% | |
| GCCTAGAAAAATTATCGGAG+AGG | - | chr1_1:26962022-26962041 | Msa0016220:intron | 40.0% | |
| ! | CCCTCTCCGATAATTTTTCT+AGG | + | chr1_1:26962026-26962045 | None:intergenic | 40.0% |
| GAAAAATTATCGGAGAGGGA+TGG | - | chr1_1:26962027-26962046 | Msa0016220:intron | 40.0% | |
| !! | CTCTTTTGGGGAGGAATTTT+CGG | + | chr1_1:26962173-26962192 | None:intergenic | 40.0% |
| ! | TGCATCAGACACTCTCTTTT+GGG | + | chr1_1:26962186-26962205 | None:intergenic | 40.0% |
| ! | ATGCATCAGACACTCTCTTT+TGG | + | chr1_1:26962187-26962206 | None:intergenic | 40.0% |
| GATAACATAACTGTCCACCA+GGG | + | chr1_1:26962265-26962284 | None:intergenic | 40.0% | |
| !! | GGGGGAGTATTGTTAGTAAT+AGG | - | chr1_1:26962316-26962335 | Msa0016220:intron | 40.0% |
| !! | AGAGGAAAAGAAAGGCATTC+AGG | - | chr1_1:26961283-26961302 | Msa0016220:intron | 40.0% |
| !! | GAGGAAAAGAAAGGCATTCA+GGG | - | chr1_1:26961284-26961303 | Msa0016220:intron | 40.0% |
| !! | AAAGAAAGGCATTCAGGGAT+TGG | - | chr1_1:26961289-26961308 | Msa0016220:intron | 40.0% |
| !! | AAGAAAGGCATTCAGGGATT+GGG | - | chr1_1:26961290-26961309 | Msa0016220:intron | 40.0% |
| GATTGGGATAAAGGATAGGT+AGG | - | chr1_1:26961306-26961325 | Msa0016220:intron | 40.0% | |
| ACCAAGACTCTCGAATTTCT+TGG | - | chr1_1:26961365-26961384 | Msa0016220:intron | 40.0% | |
| CCAAGACTCTCGAATTTCTT+GGG | - | chr1_1:26961366-26961385 | Msa0016220:intron | 40.0% | |
| TAACTAGCGGAAGAGACATT+TGG | - | chr1_1:26962733-26962752 | Msa0016220:intron | 40.0% | |
| AACTAGCGGAAGAGACATTT+GGG | - | chr1_1:26962734-26962753 | Msa0016220:intron | 40.0% | |
| ATTCATGCACGAAATGTGCA+AGG | + | chr1_1:26962805-26962824 | None:intergenic | 40.0% | |
| GAATGAGTTATTGCAAGGGA+AGG | - | chr1_1:26962896-26962915 | Msa0016220:intron | 40.0% | |
| ! | GCAAGAGCAGTTTTCTAATG+AGG | - | chr1_1:26962979-26962998 | Msa0016220:intron | 40.0% |
| CAATACCTTGAAACTTCTCC+GGG | + | chr1_1:26963130-26963149 | None:intergenic | 40.0% | |
| GCAATACCTTGAAACTTCTC+CGG | + | chr1_1:26963131-26963150 | None:intergenic | 40.0% | |
| ATGTATGTGTGCCATCAAAC+AGG | - | chr1_1:26963718-26963737 | Msa0016220:intron | 40.0% | |
| TGTATGTGTGCCATCAAACA+GGG | - | chr1_1:26963719-26963738 | Msa0016220:intron | 40.0% | |
| ! | TTGTTTCTTCTCTCTGGTAG+TGG | + | chr1_1:26963878-26963897 | None:intergenic | 40.0% |
| ! | CTGTTCTTGTTTCTTCTCTC+TGG | + | chr1_1:26963884-26963903 | None:intergenic | 40.0% |
| CAGAGAGAAGAAACAAGAAC+AGG | - | chr1_1:26963882-26963901 | Msa0016220:CDS | 40.0% | |
| GAGATGAGAGATATACAGAG+AGG | - | chr1_1:26963924-26963943 | Msa0016220:CDS | 40.0% | |
| ! | GGTTCACGTTTTCTGATCTA+CGG | - | chr1_1:26964063-26964082 | Msa0016220:CDS | 40.0% |
| ! | GTTCACGTTTTCTGATCTAC+GGG | - | chr1_1:26964064-26964083 | Msa0016220:CDS | 40.0% |
| TTCTTTGGTGAGCAGTTGTT+GGG | - | chr1_1:26964089-26964108 | Msa0016220:intron | 40.0% | |
| ! | TCGTGATGAAGGATAATGGT+GGG | - | chr1_1:26964162-26964181 | Msa0016220:CDS | 40.0% |
| GTTGTGGGTAGTGTAAATTG+TGG | - | chr1_1:26964184-26964203 | Msa0016220:CDS | 40.0% | |
| AGGGATCTACTGAAGAAGTT+GGG | + | chr1_1:26964589-26964608 | None:intergenic | 40.0% | |
| ACATGTCCACAAACTTCTCA+GGG | + | chr1_1:26964608-26964627 | None:intergenic | 40.0% | |
| ! | CTGATTTTTCTTGGACTCCT+TGG | + | chr1_1:26964639-26964658 | None:intergenic | 40.0% |
| ! | ATGGAATATGCGGGCAATTT+TGG | - | chr1_1:26964679-26964698 | Msa0016220:intron | 40.0% |
| AATTCAGTGGAGTTGAGAGT+AGG | - | chr1_1:26965033-26965052 | Msa0016220:intron | 40.0% | |
| ATTCAGTGGAGTTGAGAGTA+GGG | - | chr1_1:26965034-26965053 | Msa0016220:intron | 40.0% | |
| ATGAACATCTCGACTATGGT+TGG | - | chr1_1:26965088-26965107 | Msa0016220:intron | 40.0% | |
| ! | GACTATGGTTGGTTCACTAA+AGG | - | chr1_1:26965099-26965118 | Msa0016220:intron | 40.0% |
| ! | ATGGTTGGTTCACTAAAGGT+TGG | - | chr1_1:26965103-26965122 | Msa0016220:intron | 40.0% |
| GGTATGACCAAGTGTTAACG+AGG | + | chr1_1:26959768-26959787 | None:intergenic | 45.0% | |
| !! | CCCACATATCTGGTTTGCTT+AGG | - | chr1_1:26959930-26959949 | Msa0016220:intron | 45.0% |
| TGTGCTTGCAGATGATTCCA+AGG | - | chr1_1:26960051-26960070 | Msa0016220:intron | 45.0% | |
| AATGTTAGTCCCTTGAGGTG+TGG | + | chr1_1:26960471-26960490 | None:intergenic | 45.0% | |
| TTCGTACCTAACTGTGTGAG+AGG | - | chr1_1:26961005-26961024 | Msa0016220:intron | 45.0% | |
| TGAAAGCCTCTCACACAGTT+AGG | + | chr1_1:26961014-26961033 | None:intergenic | 45.0% | |
| GCATTCAGGGATTGGGATAA+AGG | - | chr1_1:26961297-26961316 | Msa0016220:intron | 45.0% | |
| CAGGGATTGGGATAAAGGAT+AGG | - | chr1_1:26961302-26961321 | Msa0016220:intron | 45.0% | |
| CCTCCAAGAATTCAAGAGCT+TGG | + | chr1_1:26961338-26961357 | None:intergenic | 45.0% | |
| CCAAGCTCTTGAATTCTTGG+AGG | - | chr1_1:26961335-26961354 | Msa0016220:intron | 45.0% | |
| CCCAAGAAATTCGAGAGTCT+TGG | + | chr1_1:26961369-26961388 | None:intergenic | 45.0% | |
| ! | TATCAGAGCAGTTCTGATCC+AGG | - | chr1_1:26961444-26961463 | Msa0016220:intron | 45.0% |
| ! | ATCAGAGCAGTTCTGATCCA+GGG | - | chr1_1:26961445-26961464 | Msa0016220:intron | 45.0% |
| AATTCACAGTAGGGGGGAAA+TGG | - | chr1_1:26961473-26961492 | Msa0016220:intron | 45.0% | |
| ! | TTTTGATGTCGTGGGAACAC+AGG | - | chr1_1:26961557-26961576 | Msa0016220:intron | 45.0% |
| GGTAGAAGGTCTCTATACTC+TGG | + | chr1_1:26961714-26961733 | None:intergenic | 45.0% | |
| TCGGATGAAGAAGAGGAATC+TGG | - | chr1_1:26961738-26961757 | Msa0016220:intron | 45.0% | |
| GATTGAAGGCTGAATGTGTG+AGG | + | chr1_1:26961786-26961805 | None:intergenic | 45.0% | |
| ACTCATTCAGACAGCAGAAG+AGG | - | chr1_1:26961833-26961852 | Msa0016220:intron | 45.0% | |
| TCAGACAGCAGAAGAGGAAA+AGG | - | chr1_1:26961839-26961858 | Msa0016220:intron | 45.0% | |
| TGAGTAGTGTGTTCGAATCG+AGG | - | chr1_1:26961991-26962010 | Msa0016220:intron | 45.0% | |
| GAGTAGTGTGTTCGAATCGA+GGG | - | chr1_1:26961992-26962011 | Msa0016220:intron | 45.0% | |
| ACAAACACATCTGGATCTGG+CGG | + | chr1_1:26962095-26962114 | None:intergenic | 45.0% | |
| ACCACAAACACATCTGGATC+TGG | + | chr1_1:26962098-26962117 | None:intergenic | 45.0% | |
| CTCTTCACCACAAACACATC+TGG | + | chr1_1:26962104-26962123 | None:intergenic | 45.0% | |
| GATGTGTTTGTGGTGAAGAG+TGG | - | chr1_1:26962104-26962123 | Msa0016220:intron | 45.0% | |
| !! | GTGAAGAGTGGATTATCCTC+TGG | - | chr1_1:26962116-26962135 | Msa0016220:intron | 45.0% |
| ! | ATCCTCTGGTTTGATCGAAC+TGG | - | chr1_1:26962130-26962149 | Msa0016220:intron | 45.0% |
| ! | GAGGAATTTTCGGCAGCAAT+AGG | + | chr1_1:26962163-26962182 | None:intergenic | 45.0% |
| ! | GCATCAGACACTCTCTTTTG+GGG | + | chr1_1:26962185-26962204 | None:intergenic | 45.0% |
| TGAAGTAGAGTGACAGAGCA+AGG | + | chr1_1:26962232-26962251 | None:intergenic | 45.0% | |
| ! | TACTTCAAGTTATGGGACCC+TGG | - | chr1_1:26962245-26962264 | Msa0016220:intron | 45.0% |
| GGATAACATAACTGTCCACC+AGG | + | chr1_1:26962266-26962285 | None:intergenic | 45.0% | |
| TATCCTTCACCTTGAGGACA+AGG | - | chr1_1:26962281-26962300 | Msa0016220:intron | 45.0% | |
| AAAGACTCACCTTGTCCTCA+AGG | + | chr1_1:26962293-26962312 | None:intergenic | 45.0% | |
| TGAGGACAAGGTGAGTCTTT+AGG | - | chr1_1:26962293-26962312 | Msa0016220:intron | 45.0% | |
| GAGGACAAGGTGAGTCTTTA+GGG | - | chr1_1:26962294-26962313 | Msa0016220:intron | 45.0% | |
| AGGACAAGGTGAGTCTTTAG+GGG | - | chr1_1:26962295-26962314 | Msa0016220:intron | 45.0% | |
| GCATTCAGGGATTGGGATAA+AGG | - | chr1_1:26961297-26961316 | Msa0016220:intron | 45.0% | |
| CAGGGATTGGGATAAAGGAT+AGG | - | chr1_1:26961302-26961321 | Msa0016220:intron | 45.0% | |
| AGACCAAGCTCTCGAATTCT+TGG | - | chr1_1:26962528-26962547 | Msa0016220:intron | 45.0% | |
| CAAGCTCTCGAATTCTTGGA+GGG | - | chr1_1:26962532-26962551 | Msa0016220:intron | 45.0% | |
| AAGCTCTCGAATTCTTGGAG+GGG | - | chr1_1:26962533-26962552 | Msa0016220:intron | 45.0% | |
| CCCAAGAAATTCGAGAGTCT+TGG | + | chr1_1:26961369-26961388 | None:intergenic | 45.0% | |
| !! | AACTAGGTATCGGCTGTTTC+AGG | + | chr1_1:26962857-26962876 | None:intergenic | 45.0% |
| TGAAACAGCCGATACCTAGT+TGG | - | chr1_1:26962856-26962875 | Msa0016220:intron | 45.0% | |
| !! | TTAGAAGTGTTGGTGAGGAC+AGG | - | chr1_1:26962925-26962944 | Msa0016220:intron | 45.0% |
| !! | TAGAAGTGTTGGTGAGGACA+GGG | - | chr1_1:26962926-26962945 | Msa0016220:intron | 45.0% |
| ! | AGCAGTTTTCTAATGAGGGC+AGG | - | chr1_1:26962984-26963003 | Msa0016220:intron | 45.0% |
| ! | GTTTTCTAATGAGGGCAGGT+TGG | - | chr1_1:26962988-26963007 | Msa0016220:intron | 45.0% |
| GTTACGGTTACGTCGGATTT+CGG | + | chr1_1:26963475-26963494 | None:intergenic | 45.0% | |
| ! | CAGTTTCACATGGTTTGGGA+CGG | - | chr1_1:26963550-26963569 | Msa0016220:intron | 45.0% |
| CGAAAGCGGTTCTGTCAAAA+TGG | - | chr1_1:26963574-26963593 | Msa0016220:intron | 45.0% | |
| ! | CACTAATAAGTGGACGGGTT+CGG | + | chr1_1:26963612-26963631 | None:intergenic | 45.0% |
| TCAAGACACACCCTGTTTGA+TGG | + | chr1_1:26963732-26963751 | None:intergenic | 45.0% | |
| !! | TTCTTCTCTCTGGTAGTGGT+GGG | + | chr1_1:26963874-26963893 | None:intergenic | 45.0% |
| !! | TTTCTTCTCTCTGGTAGTGG+TGG | + | chr1_1:26963875-26963894 | None:intergenic | 45.0% |
| ! | TGACGGGTCTAACGGAATAA+CGG | + | chr1_1:26964010-26964029 | None:intergenic | 45.0% |
| GACCGTTTCAACGTCAGTTT+CGG | + | chr1_1:26964037-26964056 | None:intergenic | 45.0% | |
| GAAACTGACGTTGAAACGGT+CGG | - | chr1_1:26964036-26964055 | Msa0016220:CDS | 45.0% | |
| AAACTGACGTTGAAACGGTC+GGG | - | chr1_1:26964037-26964056 | Msa0016220:CDS | 45.0% | |
| TCTGATCTACGGGTGTTCTT+TGG | - | chr1_1:26964074-26964093 | Msa0016220:intron | 45.0% | |
| GTTCTTTGGTGAGCAGTTGT+TGG | - | chr1_1:26964088-26964107 | Msa0016220:intron | 45.0% | |
| CACCATTATCCTTCATCACG+AGG | + | chr1_1:26964163-26964182 | None:intergenic | 45.0% | |
| ! | CTCGTGATGAAGGATAATGG+TGG | - | chr1_1:26964161-26964180 | Msa0016220:CDS | 45.0% |
| !! | TGAAGGATAATGGTGGGTTG+TGG | - | chr1_1:26964168-26964187 | Msa0016220:CDS | 45.0% |
| !! | GAAGGATAATGGTGGGTTGT+GGG | - | chr1_1:26964169-26964188 | Msa0016220:CDS | 45.0% |
| GGGATCTACTGAAGAAGTTG+GGG | + | chr1_1:26964588-26964607 | None:intergenic | 45.0% | |
| CAGGGATCTACTGAAGAAGT+TGG | + | chr1_1:26964590-26964609 | None:intergenic | 45.0% | |
| GTAGATCCCTGAGAAGTTTG+TGG | - | chr1_1:26964599-26964618 | Msa0016220:intron | 45.0% | |
| CACATGTCCACAAACTTCTC+AGG | + | chr1_1:26964609-26964628 | None:intergenic | 45.0% | |
| TGGACATGTGCAGAAAACCA+AGG | - | chr1_1:26964619-26964638 | Msa0016220:intron | 45.0% | |
| !! | TATGCGGGCAATTTTGGAGA+TGG | - | chr1_1:26964685-26964704 | Msa0016220:intron | 45.0% |
| TGCTTCTTCAACAGCTCACT+TGG | + | chr1_1:26964997-26965016 | None:intergenic | 45.0% | |
| AGTGAGCTGTTGAAGAAGCA+TGG | - | chr1_1:26964997-26965016 | Msa0016220:intron | 45.0% | |
| TTCAGTGGAGTTGAGAGTAG+GGG | - | chr1_1:26965035-26965054 | Msa0016220:intron | 45.0% | |
| TGGAGACACTTGCTTGTTTG+AGG | - | chr1_1:26965158-26965177 | Msa0016220:CDS | 45.0% | |
| ! | GAGCGTGGTAGTGAAGCTAA+AGG | - | chr1_1:26959184-26959203 | Msa0016220:CDS | 50.0% |
| ! | TGGTGGACCTCGTTAACACT+TGG | - | chr1_1:26959758-26959777 | Msa0016220:intron | 50.0% |
| ! | TGCAACGCGGTGATGGTATT+TGG | - | chr1_1:26960159-26960178 | Msa0016220:intron | 50.0% |
| GCAGAGGCTAATGGAAACAC+AGG | - | chr1_1:26960814-26960833 | Msa0016220:intron | 50.0% | |
| GAGGCTAATGGAAACACAGG+AGG | - | chr1_1:26960817-26960836 | Msa0016220:intron | 50.0% | |
| ATGCCACAATTTGACGGCAG+CGG | - | chr1_1:26961498-26961517 | Msa0016220:intron | 50.0% | |
| ! | GGATGGGTTTCACTCGAGTT+TGG | - | chr1_1:26962044-26962063 | Msa0016220:intron | 50.0% |
| TGGGTTTCACTCGAGTTTGG+CGG | - | chr1_1:26962047-26962066 | Msa0016220:intron | 50.0% | |
| GCCAGATCCAGATGTGTTTG+TGG | - | chr1_1:26962094-26962113 | Msa0016220:intron | 50.0% | |
| TGCCAGTTCGATCAAACCAG+AGG | + | chr1_1:26962135-26962154 | None:intergenic | 50.0% | |
| !! | TCAGACACTCTCTTTTGGGG+AGG | + | chr1_1:26962182-26962201 | None:intergenic | 50.0% |
| ! | TTCAAGTTATGGGACCCTGG+TGG | - | chr1_1:26962248-26962267 | Msa0016220:intron | 50.0% |
| TCACCTTGTCCTCAAGGTGA+AGG | + | chr1_1:26962287-26962306 | None:intergenic | 50.0% | |
| GGACAAGGTGAGTCTTTAGG+GGG | - | chr1_1:26962296-26962315 | Msa0016220:intron | 50.0% | |
| ! | GACAAGGTGAGTCTTTAGGG+GGG | - | chr1_1:26962297-26962316 | Msa0016220:intron | 50.0% |
| ! | ACAAGGTGAGTCTTTAGGGG+GGG | - | chr1_1:26962298-26962317 | Msa0016220:intron | 50.0% |
| CCTCCAAGAATTCGAGAGCT+TGG | + | chr1_1:26962534-26962553 | None:intergenic | 50.0% | |
| CCAAGCTCTCGAATTCTTGG+AGG | - | chr1_1:26962531-26962550 | Msa0016220:intron | 50.0% | |
| !! | GTATCGGCTGTTTCAGGTCA+TGG | + | chr1_1:26962851-26962870 | None:intergenic | 50.0% |
| ATCCCAACCACAAAGGAACC+AGG | - | chr1_1:26963104-26963123 | Msa0016220:intron | 50.0% | |
| GTTCAACGGTCGGATGTGTA+CGG | - | chr1_1:26963503-26963522 | Msa0016220:CDS | 50.0% | |
| TTCAACGGTCGGATGTGTAC+GGG | - | chr1_1:26963504-26963523 | Msa0016220:CDS | 50.0% | |
| !! | GGTCTAACGGAATAACGGGT+GGG | + | chr1_1:26964005-26964024 | None:intergenic | 50.0% |
| GACGGGTCTAACGGAATAAC+GGG | + | chr1_1:26964009-26964028 | None:intergenic | 50.0% | |
| GTTTCAACGTCAGTTTCGGC+GGG | + | chr1_1:26964033-26964052 | None:intergenic | 50.0% | |
| CGTTTCAACGTCAGTTTCGG+CGG | + | chr1_1:26964034-26964053 | None:intergenic | 50.0% | |
| CGCCGAAACTGACGTTGAAA+CGG | - | chr1_1:26964032-26964051 | Msa0016220:CDS | 50.0% | |
| GTGTGTAGAGTGTGTGTTCG+TGG | - | chr1_1:26964279-26964298 | Msa0016220:CDS | 50.0% | |
| TGAGAGTAGGGGAAGGAACA+TGG | - | chr1_1:26965046-26965065 | Msa0016220:intron | 50.0% | |
| GAACAACACGGCAATGAGCG+TGG | - | chr1_1:26959169-26959188 | Msa0016220:CDS | 55.0% | |
| CCACCAAACGACGAATCGCT+CGG | + | chr1_1:26959744-26959763 | None:intergenic | 55.0% | |
| AATTGGGTGCAACGCGGTGA+TGG | - | chr1_1:26960152-26960171 | Msa0016220:intron | 55.0% | |
| TTTGCATGGTCGCTCCGATG+TGG | - | chr1_1:26960200-26960219 | Msa0016220:intron | 55.0% | |
| ACTACTGCTGCCACACCTCA+AGG | - | chr1_1:26960458-26960477 | Msa0016220:intron | 55.0% | |
| CTACTGCTGCCACACCTCAA+GGG | - | chr1_1:26960459-26960478 | Msa0016220:intron | 55.0% | |
| TCACCGCTGCCGTCAAATTG+TGG | + | chr1_1:26961504-26961523 | None:intergenic | 55.0% | |
| TGATGTCGTGGGAACACAGG+AGG | - | chr1_1:26961560-26961579 | Msa0016220:intron | 55.0% | |
| GATGTCGTGGGAACACAGGA+GGG | - | chr1_1:26961561-26961580 | Msa0016220:intron | 55.0% | |
| ACAGGAGGGTGAGAAGTTGC+TGG | - | chr1_1:26961575-26961594 | Msa0016220:intron | 55.0% | |
| ! | TACGAGAGCACGGTTTCGCA+AGG | + | chr1_1:26961613-26961632 | None:intergenic | 55.0% |
| TGCGAAACCGTGCTCTCGTA+TGG | - | chr1_1:26961613-26961632 | Msa0016220:intron | 55.0% | |
| GAAACCGTGCTCTCGTATGG+TGG | - | chr1_1:26961616-26961635 | Msa0016220:intron | 55.0% | |
| ACTGCCACCATACGAGAGCA+CGG | + | chr1_1:26961623-26961642 | None:intergenic | 55.0% | |
| GATGCCATCCACATGCGAGT+TGG | - | chr1_1:26961652-26961671 | Msa0016220:intron | 55.0% | |
| ACATCTGGATCTGGCGGCTT+TGG | + | chr1_1:26962089-26962108 | None:intergenic | 55.0% | |
| GGCCTGGTTCCTTTGTGGTT+GGG | + | chr1_1:26963109-26963128 | None:intergenic | 55.0% | |
| AACCACAAAGGAACCAGGCC+CGG | - | chr1_1:26963109-26963128 | Msa0016220:intron | 55.0% | |
| CGGTTACGTCGGATTTCGGT+CGG | + | chr1_1:26963471-26963490 | None:intergenic | 55.0% | |
| ! | TGGTTTGGGACGGACGAAAG+CGG | - | chr1_1:26963560-26963579 | Msa0016220:intron | 55.0% |
| TACAACCGAGCCAAACCACC+TGG | - | chr1_1:26963979-26963998 | Msa0016220:CDS | 55.0% | |
| ! | GGGTCTAACGGAATAACGGG+TGG | + | chr1_1:26964006-26964025 | None:intergenic | 55.0% |
| GACGTTGAAACGGTCGGGAA+TGG | - | chr1_1:26964042-26964061 | Msa0016220:CDS | 55.0% | |
| TGACAGTAAGGGGTGAGCAC+CGG | + | chr1_1:26964135-26964154 | None:intergenic | 55.0% | |
| GTGGAGTTGAGAGTAGGGGA+AGG | - | chr1_1:26965039-26965058 | Msa0016220:intron | 55.0% | |
| GCTCCGAGCGATTCGTCGTT+TGG | - | chr1_1:26959738-26959757 | Msa0016220:intron | 60.0% | |
| CCGAGCGATTCGTCGTTTGG+TGG | - | chr1_1:26959741-26959760 | Msa0016220:intron | 60.0% | |
| ACGGCAGCGGTGACGCTTAT+TGG | - | chr1_1:26961511-26961530 | Msa0016220:intron | 60.0% | |
| GCAGCGGTGACGCTTATTGG+TGG | - | chr1_1:26961514-26961533 | Msa0016220:intron | 60.0% | |
| GGAGGGTGAGAAGTTGCTGG+AGG | - | chr1_1:26961578-26961597 | Msa0016220:intron | 60.0% | |
| GGGTGAGAAGTTGCTGGAGG+CGG | - | chr1_1:26961581-26961600 | Msa0016220:intron | 60.0% | |
| GTGCTCTCGTATGGTGGCAG+TGG | - | chr1_1:26961622-26961641 | Msa0016220:intron | 60.0% | |
| CTCTCGTATGGTGGCAGTGG+TGG | - | chr1_1:26961625-26961644 | Msa0016220:intron | 60.0% | |
| CTCGCCAACTCGCATGTGGA+TGG | + | chr1_1:26961659-26961678 | None:intergenic | 60.0% | |
| AACGCTCGCCAACTCGCATG+TGG | + | chr1_1:26961663-26961682 | None:intergenic | 60.0% | |
| GCTTTGGCAACGGTGGAGGT+AGG | + | chr1_1:26962073-26962092 | None:intergenic | 60.0% | |
| ! | GGATCTGGCGGCTTTGGCAA+CGG | + | chr1_1:26962083-26962102 | None:intergenic | 60.0% |
| ! | GTGTTGGTGAGGACAGGGCA+TGG | - | chr1_1:26962931-26962950 | Msa0016220:intron | 60.0% |
| GGGCCTGGTTCCTTTGTGGT+TGG | + | chr1_1:26963110-26963129 | None:intergenic | 60.0% | |
| CCTTGAAACTTCTCCGGGCC+TGG | + | chr1_1:26963125-26963144 | None:intergenic | 60.0% | |
| CCAGGCCCGGAGAAGTTTCA+AGG | - | chr1_1:26963122-26963141 | Msa0016220:intron | 60.0% | |
| !! | AACGGAATAACGGGTGGGCC+AGG | + | chr1_1:26964000-26964019 | None:intergenic | 60.0% |
| ACGTCAGTTTCGGCGGGTGA+CGG | + | chr1_1:26964027-26964046 | None:intergenic | 60.0% | |
| !! | AGTAAGGGGTGAGCACCGGT+CGG | + | chr1_1:26964131-26964150 | None:intergenic | 60.0% |
| ! | TCTGGCGGCTTTGGCAACGG+TGG | + | chr1_1:26962080-26962099 | None:intergenic | 65.0% |
| CTCCGGGCCTGGTTCCTTTG+TGG | + | chr1_1:26963114-26963133 | None:intergenic | 65.0% | |
| TCTCACACTTCACGCGCGCG+TGG | + | chr1_1:26963656-26963675 | None:intergenic | 65.0% | |
| ! | GTGGGCCAGGTGGTTTGGCT+CGG | + | chr1_1:26963987-26964006 | None:intergenic | 65.0% |
| AACGGGTGGGCCAGGTGGTT+TGG | + | chr1_1:26963992-26964011 | None:intergenic | 65.0% | |
| !! | GGAATAACGGGTGGGCCAGG+TGG | + | chr1_1:26963997-26964016 | None:intergenic | 65.0% |
| !! | TCGGCGGGTGACGGGTCTAA+CGG | + | chr1_1:26964018-26964037 | None:intergenic | 65.0% |
| CGTCAGTTTCGGCGGGTGAC+GGG | + | chr1_1:26964026-26964045 | None:intergenic | 65.0% | |
| ! | CGGTCGGTTACGGGCGGATT+CGG | + | chr1_1:26964115-26964134 | None:intergenic | 65.0% |
| CGAATCCGCCCGTAACCGAC+CGG | - | chr1_1:26964113-26964132 | Msa0016220:CDS | 65.0% | |
| !! | GGTGAGCACCGGTCGGTTAC+GGG | + | chr1_1:26964124-26964143 | None:intergenic | 65.0% |
| !! | GGGTGAGCACCGGTCGGTTA+CGG | + | chr1_1:26964125-26964144 | None:intergenic | 65.0% |
| ! | GGCGGCTTTGGCAACGGTGG+AGG | + | chr1_1:26962077-26962096 | None:intergenic | 70.0% |
| !! | GAGCACCGGTCGGTTACGGG+CGG | + | chr1_1:26964121-26964140 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 26959160 | 26965224 | 26959160 | ID=Msa0016220;Name=Msa0016220 |
| chr1_1 | mRNA | 26959160 | 26965224 | 26959160 | ID=Msa0016220-mRNA-1;Parent=Msa0016220;Name=Msa0016220-mRNA-1;_AED=0.19;_eAED=0.26;_QI=0|0|0|1|0.66|0.57|7|0|359 |
| chr1_1 | exon | 26965126 | 26965224 | 26965126 | ID=Msa0016220-mRNA-1:exon:9038;Parent=Msa0016220-mRNA-1 |
| chr1_1 | exon | 26964100 | 26964322 | 26964100 | ID=Msa0016220-mRNA-1:exon:9037;Parent=Msa0016220-mRNA-1 |
| chr1_1 | exon | 26963848 | 26964090 | 26963848 | ID=Msa0016220-mRNA-1:exon:9036;Parent=Msa0016220-mRNA-1 |
| chr1_1 | exon | 26963468 | 26963566 | 26963468 | ID=Msa0016220-mRNA-1:exon:9035;Parent=Msa0016220-mRNA-1 |
| chr1_1 | exon | 26959639 | 26959752 | 26959639 | ID=Msa0016220-mRNA-1:exon:9034;Parent=Msa0016220-mRNA-1 |
| chr1_1 | exon | 26959486 | 26959544 | 26959486 | ID=Msa0016220-mRNA-1:exon:9033;Parent=Msa0016220-mRNA-1 |
| chr1_1 | exon | 26959160 | 26959402 | 26959160 | ID=Msa0016220-mRNA-1:exon:9032;Parent=Msa0016220-mRNA-1 |
| chr1_1 | CDS | 26965126 | 26965224 | 26965126 | ID=Msa0016220-mRNA-1:cds;Parent=Msa0016220-mRNA-1 |
| chr1_1 | CDS | 26964100 | 26964322 | 26964100 | ID=Msa0016220-mRNA-1:cds;Parent=Msa0016220-mRNA-1 |
| chr1_1 | CDS | 26963848 | 26964090 | 26963848 | ID=Msa0016220-mRNA-1:cds;Parent=Msa0016220-mRNA-1 |
| chr1_1 | CDS | 26963468 | 26963566 | 26963468 | ID=Msa0016220-mRNA-1:cds;Parent=Msa0016220-mRNA-1 |
| chr1_1 | CDS | 26959639 | 26959752 | 26959639 | ID=Msa0016220-mRNA-1:cds;Parent=Msa0016220-mRNA-1 |
| chr1_1 | CDS | 26959486 | 26959544 | 26959486 | ID=Msa0016220-mRNA-1:cds;Parent=Msa0016220-mRNA-1 |
| chr1_1 | CDS | 26959160 | 26959402 | 26959160 | ID=Msa0016220-mRNA-1:cds;Parent=Msa0016220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
