Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0016230 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0016230 | MtrunA17_Chr1g0163131 | 65.625 | 320 | 64 | 6 | 38 | 323 | 1 | 308 | 4.32e-132 | 388 |
| Msa0016230 | MtrunA17_Chr6g0476171 | 72.400 | 250 | 45 | 5 | 350 | 578 | 2 | 248 | 1.86e-115 | 343 |
| Msa0016230 | MtrunA17_Chr6g0476171 | 41.584 | 101 | 54 | 3 | 213 | 310 | 136 | 234 | 3.30e-12 | 67.0 |
| Msa0016230 | MtrunA17_Chr1g0163101 | 63.372 | 172 | 32 | 4 | 44 | 188 | 2 | 169 | 4.57e-62 | 202 |
| Msa0016230 | MtrunA17_Chr1g0163101 | 63.415 | 41 | 15 | 0 | 309 | 349 | 26 | 66 | 6.44e-12 | 64.7 |
| Msa0016230 | MtrunA17_Chr1g0162161 | 57.447 | 141 | 31 | 3 | 75 | 188 | 4 | 142 | 1.44e-42 | 150 |
| Msa0016230 | MtrunA17_Chr1g0162161 | 82.857 | 35 | 6 | 0 | 315 | 349 | 3 | 37 | 4.52e-12 | 64.7 |
| Msa0016230 | MtrunA17_Chr1g0163121 | 59.420 | 138 | 26 | 3 | 73 | 188 | 9 | 138 | 6.31e-42 | 147 |
| Msa0016230 | MtrunA17_Chr1g0163161 | 62.016 | 129 | 20 | 4 | 87 | 188 | 1 | 127 | 1.36e-37 | 135 |
| Msa0016230 | MtrunA17_Chr1g0163081 | 57.364 | 129 | 27 | 3 | 75 | 181 | 6 | 128 | 2.52e-37 | 135 |
| Msa0016230 | MtrunA17_Chr6g0476181 | 51.266 | 158 | 26 | 5 | 75 | 188 | 2 | 152 | 2.33e-33 | 125 |
| Msa0016230 | MtrunA17_Chr6g0476181 | 74.286 | 35 | 9 | 0 | 315 | 349 | 1 | 35 | 5.55e-11 | 61.2 |
| Msa0016230 | MtrunA17_Chr1g0163201 | 37.751 | 249 | 124 | 10 | 349 | 574 | 151 | 391 | 4.70e-32 | 128 |
| Msa0016230 | MtrunA17_Chr1g0163201 | 55.556 | 90 | 36 | 2 | 226 | 313 | 297 | 384 | 1.77e-23 | 103 |
| Msa0016230 | MtrunA17_Chr1g0163201 | 24.918 | 305 | 172 | 8 | 75 | 336 | 19 | 309 | 1.45e-14 | 75.9 |
| Msa0016230 | MtrunA17_Chr1g0163141 | 46.875 | 160 | 41 | 3 | 73 | 188 | 9 | 168 | 4.26e-31 | 119 |
| Msa0016230 | MtrunA17_Chr1g0163141 | 65.116 | 43 | 14 | 1 | 308 | 349 | 2 | 44 | 1.44e-11 | 63.5 |
| Msa0016230 | MtrunA17_Chr1g0163111 | 36.937 | 222 | 107 | 11 | 382 | 575 | 12 | 228 | 1.04e-29 | 117 |
| Msa0016230 | MtrunA17_Chr1g0163111 | 43.243 | 111 | 47 | 3 | 227 | 323 | 122 | 230 | 4.83e-18 | 83.6 |
| Msa0016230 | MtrunA17_Chr1g0163151 | 37.156 | 218 | 112 | 9 | 377 | 575 | 10 | 221 | 5.97e-29 | 114 |
| Msa0016230 | MtrunA17_Chr1g0163151 | 52.222 | 90 | 39 | 2 | 226 | 313 | 126 | 213 | 4.65e-23 | 97.8 |
| Msa0016230 | MtrunA17_Chr1g0162151 | 34.061 | 229 | 110 | 8 | 360 | 573 | 3 | 205 | 6.77e-26 | 105 |
| Msa0016230 | MtrunA17_Chr1g0162151 | 46.154 | 78 | 33 | 1 | 251 | 328 | 146 | 214 | 3.95e-13 | 68.9 |
| Msa0016230 | MtrunA17_Chr1g0163181 | 31.301 | 246 | 117 | 10 | 377 | 575 | 189 | 429 | 5.15e-24 | 105 |
| Msa0016230 | MtrunA17_Chr1g0163181 | 24.053 | 449 | 260 | 13 | 68 | 468 | 14 | 429 | 3.86e-23 | 102 |
| Msa0016230 | MtrunA17_Chr1g0163091 | 44.286 | 140 | 53 | 6 | 360 | 483 | 3 | 133 | 6.84e-23 | 95.5 |
| Msa0016230 | MtrunA17_Chr1g0163261 | 46.324 | 136 | 54 | 5 | 354 | 474 | 157 | 288 | 1.72e-22 | 98.2 |
| Msa0016230 | MtrunA17_Chr1g0163261 | 26.056 | 284 | 153 | 9 | 59 | 308 | 9 | 269 | 7.98e-16 | 78.6 |
| Msa0016230 | MtrunA17_Chr4g0067431 | 26.623 | 308 | 153 | 12 | 54 | 308 | 10 | 297 | 1.55e-18 | 87.0 |
| Msa0016230 | MtrunA17_Chr1g0163221 | 26.756 | 299 | 149 | 10 | 53 | 308 | 5 | 276 | 6.61e-18 | 85.5 |
| Msa0016230 | MtrunA17_Chr1g0163231 | 26.761 | 284 | 143 | 12 | 59 | 306 | 9 | 263 | 7.66e-18 | 84.3 |
| Msa0016230 | MtrunA17_Chr1g0163231 | 37.736 | 159 | 70 | 7 | 329 | 470 | 134 | 280 | 2.12e-14 | 74.3 |
| Msa0016230 | MtrunA17_Chr3g0103181 | 27.243 | 301 | 150 | 9 | 49 | 312 | 2 | 270 | 4.45e-16 | 79.0 |
| Msa0016230 | MtrunA17_Chr8g0390841 | 22.828 | 495 | 283 | 15 | 57 | 467 | 37 | 516 | 5.66e-16 | 80.9 |
| Msa0016230 | MtrunA17_Chr1g0163251 | 38.255 | 149 | 69 | 6 | 348 | 481 | 152 | 292 | 1.38e-15 | 79.0 |
| Msa0016230 | MtrunA17_Chr1g0163251 | 25.641 | 273 | 147 | 8 | 68 | 306 | 14 | 264 | 6.79e-15 | 77.0 |
| Msa0016230 | MtrunA17_Chr1g0171611 | 33.333 | 105 | 47 | 1 | 59 | 140 | 9 | 113 | 1.95e-12 | 68.2 |
| Msa0016230 | MtrunA17_Chr1g0171611 | 37.736 | 106 | 48 | 2 | 382 | 470 | 164 | 268 | 2.85e-11 | 64.7 |
| Msa0016230 | MtrunA17_Chr1g0208771 | 23.871 | 465 | 261 | 18 | 75 | 467 | 13 | 456 | 2.07e-12 | 69.7 |
| Msa0016230 | MtrunA17_Chr1g0163191 | 36.697 | 109 | 45 | 2 | 68 | 153 | 14 | 121 | 2.07e-12 | 65.5 |
| Msa0016230 | MtrunA17_Chr5g0419201 | 29.801 | 151 | 74 | 4 | 55 | 174 | 12 | 161 | 1.87e-11 | 63.5 |
| Msa0016230 | MtrunA17_Chr3g0131891 | 24.567 | 289 | 175 | 10 | 53 | 309 | 13 | 290 | 3.97e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 101 sgRNAs with CRISPR-Local
Find 391 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGATCAACATCTCGATTA+TGG | 0.186232 | 1_1:+26974378 | Msa0016230:CDS |
| TCTTCTTGTAATGATAATAT+TGG | 0.220750 | 1_1:+26968936 | Msa0016230:CDS |
| TGCAGGTTGGAGAAAGTTTC+AGG | 0.242187 | 1_1:+26969827 | Msa0016230:CDS |
| TATACTAGATGATGGTAAAT+TGG | 0.271562 | 1_1:+26968593 | Msa0016230:CDS |
| GGGCATGGTTCCTTTGTGGC+TGG | 0.290615 | 1_1:-26973901 | None:intergenic |
| TTGAATTTGTCGTGTAAATT+CGG | 0.303125 | 1_1:-26974148 | None:intergenic |
| GATCTGAGTGCAAAATGTTT+TGG | 0.333184 | 1_1:+26968483 | Msa0016230:CDS |
| AAAAGTCATAATATATTTAG+TGG | 0.334344 | 1_1:+26974304 | Msa0016230:CDS |
| GAAGAATGCAAATTGAAGTT+TGG | 0.337203 | 1_1:+26969849 | Msa0016230:CDS |
| GGTCTGAGTTCAAAATGAAT+TGG | 0.350012 | 1_1:+26973057 | Msa0016230:CDS |
| CTTCTTGTAATGATAATATT+GGG | 0.353295 | 1_1:+26968937 | Msa0016230:CDS |
| AGCAGCCGCCATGCTCTATC+AGG | 0.356686 | 1_1:+26968988 | Msa0016230:CDS |
| CAAACGTTCTTCTAAACATC+TGG | 0.359620 | 1_1:-26974516 | None:intergenic |
| AATCGGACCCTCCTTTGTAT+TGG | 0.370634 | 1_1:-26968560 | None:intergenic |
| TGTTTACTCAAGAACTCATT+TGG | 0.374164 | 1_1:-26969711 | None:intergenic |
| TTATAACCTTCAATGTGATA+TGG | 0.376198 | 1_1:-26973269 | None:intergenic |
| CTCTGGGCATGGTTCCTTTG+TGG | 0.384680 | 1_1:-26973905 | None:intergenic |
| TACAATGCTTGTTTGAATCA+TGG | 0.387500 | 1_1:-26968650 | None:intergenic |
| CGGCAAAGCACGATTTACTA+TGG | 0.393596 | 1_1:+26967828 | Msa0016230:CDS |
| GGCATGGTTCCTTTGTGGCT+GGG | 0.402651 | 1_1:-26973900 | None:intergenic |
| ATGATCAACATCTCGATTAT+GGG | 0.408633 | 1_1:+26974379 | Msa0016230:CDS |
| CATTGAAGGTTATAATAGAT+TGG | 0.414338 | 1_1:+26973277 | Msa0016230:CDS |
| GAAATACCATGAAACTGCTC+TGG | 0.420044 | 1_1:-26973922 | None:intergenic |
| GTGTTATGTTTCATTACATC+AGG | 0.428980 | 1_1:-26969539 | None:intergenic |
| TATTCTTTCGAAAACCATCT+AGG | 0.429204 | 1_1:-26973664 | None:intergenic |
| AGATTTACATGGAAAATTTG+TGG | 0.454668 | 1_1:+26969737 | Msa0016230:CDS |
| TTAGAAGTGTTGGTGAGGAC+AGG | 0.455257 | 1_1:+26973719 | Msa0016230:CDS |
| GTCTGAGTTCAAAATGAATT+GGG | 0.455385 | 1_1:+26973058 | Msa0016230:CDS |
| TATGTCATTATACTAGATGA+TGG | 0.456009 | 1_1:+26968585 | Msa0016230:CDS |
| TACTTGTCCACAAAATTCCT+TGG | 0.459394 | 1_1:-26968416 | None:intergenic |
| ATAGTAATTGTGAATAAAAG+TGG | 0.459566 | 1_1:-26973874 | None:intergenic |
| AGTACTTGTAGAATAGTGTT+TGG | 0.460642 | 1_1:-26967740 | None:intergenic |
| TTATCGCCATATCACATTGA+AGG | 0.463256 | 1_1:+26973263 | Msa0016230:CDS |
| TAAAAGAAACTGTGGAGGCC+GGG | 0.464482 | 1_1:+26973145 | Msa0016230:CDS |
| TTGCAACTCACGAAGTTGAA+TGG | 0.465358 | 1_1:-26967889 | None:intergenic |
| CCATGCCCAGAGCAGTTTCA+TGG | 0.469977 | 1_1:+26973916 | Msa0016230:CDS |
| GAATTTACACGACAAATTCA+AGG | 0.470517 | 1_1:+26974150 | Msa0016230:CDS |
| ACTAATTCTGCCACACCTCA+TGG | 0.474711 | 1_1:+26968732 | Msa0016230:CDS |
| TGGACGTGGGAGTGAAACTA+AGG | 0.482588 | 1_1:+26967848 | Msa0016230:CDS |
| CTGCATAAAATCTACTGCCT+TGG | 0.484079 | 1_1:-26969809 | None:intergenic |
| GATTATGGGTGGTTCACTAA+AGG | 0.487439 | 1_1:+26974393 | Msa0016230:CDS |
| TGAAACAGATAATACCTAGA+TGG | 0.494737 | 1_1:+26973650 | Msa0016230:intron |
| AGAATAAGGAACATGGTTTG+TGG | 0.498161 | 1_1:+26974347 | Msa0016230:intron |
| CTAAAAGAAACTGTGGAGGC+CGG | 0.503466 | 1_1:+26973144 | Msa0016230:CDS |
| TTTGTGGAGTTGAAAGTTGG+TGG | 0.507850 | 1_1:+26969753 | Msa0016230:CDS |
| AGAGAACGCAATGTGAAGAT+TGG | 0.508177 | 1_1:+26974432 | Msa0016230:CDS |
| GATAATTTGACGGTGAAACT+AGG | 0.514346 | 1_1:-26973245 | None:intergenic |
| ACATCGCTTAGACTTCCAAA+TGG | 0.515725 | 1_1:+26973035 | Msa0016230:CDS |
| GAAAATTCGTAGAGAGACAT+TGG | 0.515869 | 1_1:+26972994 | Msa0016230:CDS |
| AGTAAACATGAAGATTTACA+TGG | 0.517051 | 1_1:+26969726 | Msa0016230:CDS |
| ACTCACGAAGTTGAATGGTT+AGG | 0.519347 | 1_1:-26967884 | None:intergenic |
| TGTGCAAAATCATGTGTTCA+AGG | 0.521657 | 1_1:+26974482 | Msa0016230:CDS |
| GCAACCAAGCAAAATGTCTC+AGG | 0.523287 | 1_1:+26968774 | Msa0016230:CDS |
| AAATTTGTGGAGTTGAAAGT+TGG | 0.530932 | 1_1:+26969750 | Msa0016230:CDS |
| TTTGGAAGTCTAAGCGATGT+TGG | 0.531226 | 1_1:-26973032 | None:intergenic |
| TCAAAACAAGAATAGTATCA+TGG | 0.532100 | 1_1:+26967797 | Msa0016230:CDS |
| CCATGAAACTGCTCTGGGCA+TGG | 0.534985 | 1_1:-26973916 | None:intergenic |
| GCACAAATTATCATCCCAAT+GGG | 0.541386 | 1_1:+26973219 | Msa0016230:CDS |
| TTTGTGGACAAGTATTGGAA+AGG | 0.542062 | 1_1:+26968425 | Msa0016230:CDS |
| TGCACAAATTATCATCCCAA+TGG | 0.551525 | 1_1:+26973218 | Msa0016230:CDS |
| ATTTCTTAGCTTTCTTACCC+CGG | 0.551754 | 1_1:-26973163 | None:intergenic |
| TATATCTGCAGACGATTCCA+AGG | 0.552357 | 1_1:+26968399 | Msa0016230:intron |
| CATCGCTTAGACTTCCAAAT+GGG | 0.555762 | 1_1:+26973036 | Msa0016230:CDS |
| TGAAAGTTGGTGGAAAGTCG+TGG | 0.557106 | 1_1:+26969763 | Msa0016230:CDS |
| ATGGGTGGTTCACTAAAGGT+TGG | 0.558127 | 1_1:+26974397 | Msa0016230:CDS |
| CATGTTTCTATAGATTCAGA+AGG | 0.561733 | 1_1:+26969515 | Msa0016230:intron |
| TAGAAGTGTTGGTGAGGACA+GGG | 0.562489 | 1_1:+26973720 | Msa0016230:CDS |
| CTAATTCTGCCACACCTCAT+GGG | 0.562653 | 1_1:+26968733 | Msa0016230:CDS |
| AAAAGAAACTGTGGAGGCCG+GGG | 0.563548 | 1_1:+26973146 | Msa0016230:CDS |
| ACTTGTAGAATAGTGTTTGG+CGG | 0.564314 | 1_1:-26967737 | None:intergenic |
| CTCACCAACACTTCTAATTG+TGG | 0.571224 | 1_1:-26973713 | None:intergenic |
| AATCGTGCTTTGCCGATGAA+AGG | 0.571426 | 1_1:-26967820 | None:intergenic |
| AAGGCCACAATTAGAAGTGT+TGG | 0.571434 | 1_1:+26973709 | Msa0016230:CDS |
| GTGAAACTAGGACTCCCATT+GGG | 0.575881 | 1_1:-26973233 | None:intergenic |
| AGCACGATTTACTATGGACG+TGG | 0.578176 | 1_1:+26967834 | Msa0016230:CDS |
| GGTGAAACTAGGACTCCCAT+TGG | 0.578470 | 1_1:-26973234 | None:intergenic |
| CCTCACAAGGTTATGATGGA+AGG | 0.580542 | 1_1:+26968910 | Msa0016230:CDS |
| CCTTCCATCATAACCTTGTG+AGG | 0.580545 | 1_1:-26968910 | None:intergenic |
| ATAGTATCATGGCCTTTCAT+CGG | 0.586471 | 1_1:+26967808 | Msa0016230:CDS |
| TCCATCATAACCTTGTGAGG+GGG | 0.591477 | 1_1:-26968907 | None:intergenic |
| AAATTGAATTATTATCTCCA+AGG | 0.594943 | 1_1:+26969792 | Msa0016230:CDS |
| GTGATATGGCGATAATTTGA+CGG | 0.598386 | 1_1:-26973255 | None:intergenic |
| CTTCCATCATAACCTTGTGA+GGG | 0.599839 | 1_1:-26968909 | None:intergenic |
| CACAATTAGAAGTGTTGGTG+AGG | 0.602624 | 1_1:+26973714 | Msa0016230:CDS |
| AAATACCATGAAACTGCTCT+GGG | 0.610013 | 1_1:-26973921 | None:intergenic |
| TTCCATCATAACCTTGTGAG+GGG | 0.610916 | 1_1:-26968908 | None:intergenic |
| TGAAAGTAGAATAAGGAACA+TGG | 0.612724 | 1_1:+26974340 | Msa0016230:intron |
| TGTTGTGAATTCATCATACC+CGG | 0.620326 | 1_1:+26969571 | Msa0016230:CDS |
| GAGGAGTACCTGATAGAGCA+TGG | 0.633104 | 1_1:-26968996 | None:intergenic |
| ATCAACATCTCGATTATGGG+TGG | 0.637974 | 1_1:+26974382 | Msa0016230:CDS |
| GCAGAGACTAAAAGAAACTG+TGG | 0.642037 | 1_1:+26973137 | Msa0016230:intron |
| TACTATTATCCCAGCCACAA+AGG | 0.646969 | 1_1:+26973891 | Msa0016230:CDS |
| GAATGAGTTATTGCAACAGA+AGG | 0.647927 | 1_1:+26973690 | Msa0016230:CDS |
| GTGTTGGTGAGGACAGGGCA+TGG | 0.648324 | 1_1:+26973725 | Msa0016230:CDS |
| GGACGTGGGAGTGAAACTAA+GGG | 0.652707 | 1_1:+26967849 | Msa0016230:CDS |
| ATAAGGAACATGGTTTGTGG+AGG | 0.655953 | 1_1:+26974350 | Msa0016230:intron |
| GCGGTGATAATTGTGTGTTG+TGG | 0.659296 | 1_1:-26967718 | None:intergenic |
| GAGACTAAAAGAAACTGTGG+AGG | 0.692010 | 1_1:+26973140 | Msa0016230:intron |
| GCACGATTTACTATGGACGT+GGG | 0.698594 | 1_1:+26967835 | Msa0016230:CDS |
| AAAATGAATTGGGTACAACG+CGG | 0.771281 | 1_1:+26973068 | Msa0016230:CDS |
| GAGTACCTGATAGAGCATGG+CGG | 0.813629 | 1_1:-26968993 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGAAAAAAAAAATGTTATT+TGG | + | chr1_1:26968851-26968870 | Msa0016230:intron | 10.0% |
| !! | AATAAAAAAAAGTTCATTTA+AGG | - | chr1_1:26969039-26969058 | None:intergenic | 10.0% |
| !! | TGAATAAAAAATAATAATAG+AGG | - | chr1_1:26969062-26969081 | None:intergenic | 10.0% |
| !! | TAACATAAAAAATACTTATT+TGG | + | chr1_1:26971737-26971756 | Msa0016230:intron | 10.0% |
| !!! | ATTTTTAGTTTCAAAATTTT+AGG | - | chr1_1:26972525-26972544 | None:intergenic | 10.0% |
| !! | TTGACTAAATGATAAAAAAA+TGG | - | chr1_1:26967956-26967975 | None:intergenic | 15.0% |
| !! | TTTAGTCAATAATCTTTATA+AGG | + | chr1_1:26967967-26967986 | Msa0016230:intron | 15.0% |
| !!! | TTTGAAAATTTTAGAGATAT+TGG | - | chr1_1:26968461-26968480 | None:intergenic | 15.0% |
| !!! | ATATCTCTAAAATTTTCAAA+TGG | + | chr1_1:26968461-26968480 | Msa0016230:CDS | 15.0% |
| !! | TAGTATAATGACATAAAAAT+CGG | - | chr1_1:26968580-26968599 | None:intergenic | 15.0% |
| !! | TTTAATCTAGAGAAATAATA+AGG | - | chr1_1:26969256-26969275 | None:intergenic | 15.0% |
| !! | TTAAATGTCTCTAAATAATT+TGG | + | chr1_1:26969398-26969417 | Msa0016230:intron | 15.0% |
| !! | ATATGCAGATATATAAATAT+AGG | + | chr1_1:26969628-26969647 | Msa0016230:intron | 15.0% |
| !! | TAACATATATAAGGAAATAT+CGG | - | chr1_1:26970357-26970376 | None:intergenic | 15.0% |
| !! | TTCCTTATATATGTTATTAT+CGG | + | chr1_1:26970361-26970380 | Msa0016230:intron | 15.0% |
| !! | GATACATTAATTATACAATA+CGG | - | chr1_1:26971144-26971163 | None:intergenic | 15.0% |
| !! | ATTAAATTGTTGAAATTGTT+AGG | - | chr1_1:26971563-26971582 | None:intergenic | 15.0% |
| !! | AACAATTTCAACAATTTAAT+TGG | + | chr1_1:26971563-26971582 | Msa0016230:intron | 15.0% |
| !!! | TTATTGCTTAAATACATTTT+GGG | - | chr1_1:26971632-26971651 | None:intergenic | 15.0% |
| !!! | TTTATTGCTTAAATACATTT+TGG | - | chr1_1:26971633-26971652 | None:intergenic | 15.0% |
| !!! | AAAATTTTAGGTAGAAAAAT+AGG | - | chr1_1:26972513-26972532 | None:intergenic | 15.0% |
| !! | TTTATTATCATTAATGGAAT+TGG | + | chr1_1:26972562-26972581 | Msa0016230:intron | 15.0% |
| !! | CATTACTAGTTAAAATTAAT+TGG | + | chr1_1:26972940-26972959 | Msa0016230:intron | 15.0% |
| !!! | TTTAGGTATATTTTAATTAC+TGG | + | chr1_1:26973555-26973574 | Msa0016230:intron | 15.0% |
| !! | AAAAGTCATAATATATTTAG+TGG | + | chr1_1:26974304-26974323 | Msa0016230:CDS | 15.0% |
| !! | TAAAAAAATGGAAAGAAAGA+AGG | - | chr1_1:26967944-26967963 | None:intergenic | 20.0% |
| !!! | TTTATACATCAAGATGTTTT+AGG | + | chr1_1:26968032-26968051 | Msa0016230:intron | 20.0% |
| !! | ACCTATTCAAATTAAATATG+TGG | - | chr1_1:26968196-26968215 | None:intergenic | 20.0% |
| !! | AAACTTTATTCAATAACGTA+AGG | - | chr1_1:26968265-26968284 | None:intergenic | 20.0% |
| !!! | AAATTTTCAAGTGGAAAAAT+GGG | - | chr1_1:26968307-26968326 | None:intergenic | 20.0% |
| !! | TCTTCTTGTAATGATAATAT+TGG | + | chr1_1:26968936-26968955 | Msa0016230:CDS | 20.0% |
| !! | CTTCTTGTAATGATAATATT+GGG | + | chr1_1:26968937-26968956 | Msa0016230:CDS | 20.0% |
| !! | AGGAAAGAGAAAAAATAATT+TGG | + | chr1_1:26969148-26969167 | Msa0016230:intron | 20.0% |
| !! | CGAGAAATATGAAATTAAAA+TGG | - | chr1_1:26969221-26969240 | None:intergenic | 20.0% |
| !! | ATTACTTATGATGTAAAATG+TGG | + | chr1_1:26969598-26969617 | Msa0016230:intron | 20.0% |
| !! | AAATTGAATTATTATCTCCA+AGG | + | chr1_1:26969792-26969811 | Msa0016230:CDS | 20.0% |
| !! | AACATATATAAGGAAATATC+GGG | - | chr1_1:26970356-26970375 | None:intergenic | 20.0% |
| !! | AACCGATAATAACATATATA+AGG | - | chr1_1:26970366-26970385 | None:intergenic | 20.0% |
| !!! | CATTATCTAAGTTCATTTTA+CGG | - | chr1_1:26970429-26970448 | None:intergenic | 20.0% |
| !! | GTATACATTCATTATGTTAT+AGG | - | chr1_1:26970469-26970488 | None:intergenic | 20.0% |
| !! | TTAAAAAAAAGACATTGCAA+AGG | - | chr1_1:26971287-26971306 | None:intergenic | 20.0% |
| !! | AACACAAATAAAAAGTGATT+TGG | + | chr1_1:26971765-26971784 | Msa0016230:intron | 20.0% |
| !!! | TATAATTGCTTTGTTTTCTT+AGG | + | chr1_1:26972397-26972416 | Msa0016230:intron | 20.0% |
| !! | AGGTCAATATATAAGAAATT+GGG | - | chr1_1:26972449-26972468 | None:intergenic | 20.0% |
| !! | AAGGTCAATATATAAGAAAT+TGG | - | chr1_1:26972450-26972469 | None:intergenic | 20.0% |
| !! | TAAAAATAAACAACCATGTA+CGG | + | chr1_1:26972538-26972557 | Msa0016230:intron | 20.0% |
| !! | TACGGATTTATTATCATTAA+TGG | + | chr1_1:26972556-26972575 | Msa0016230:intron | 20.0% |
| !!! | TTGTTTGTTAGAAACTAAAA+CGG | + | chr1_1:26972872-26972891 | Msa0016230:intron | 20.0% |
| !! | TATTTACAAGAGAAACATTT+GGG | - | chr1_1:26973404-26973423 | None:intergenic | 20.0% |
| !! | ATTAACAGAAAACATATTCA+AGG | + | chr1_1:26973442-26973461 | Msa0016230:intron | 20.0% |
| !! | ATAGTAATTGTGAATAAAAG+TGG | - | chr1_1:26973877-26973896 | None:intergenic | 20.0% |
| !!! | ATCATGTGTAACAAATTTTA+AGG | + | chr1_1:26974005-26974024 | Msa0016230:intron | 20.0% |
| !! | ATTCAACATATCTATAAACA+AGG | - | chr1_1:26974224-26974243 | None:intergenic | 20.0% |
| ! | TCAAAACAAGAATAGTATCA+TGG | + | chr1_1:26967797-26967816 | Msa0016230:CDS | 25.0% |
| ! | AGTGAGAAATGAATGAATAA+AGG | + | chr1_1:26967999-26968018 | Msa0016230:intron | 25.0% |
| ! | AGAAATGAATGAATAAAGGA+GGG | + | chr1_1:26968003-26968022 | Msa0016230:intron | 25.0% |
| !!! | TTTATTTCTAAGACCTTCAA+CGG | + | chr1_1:26968068-26968087 | Msa0016230:intron | 25.0% |
| !!! | GCCACATATTTAATTTGAAT+AGG | + | chr1_1:26968192-26968211 | Msa0016230:intron | 25.0% |
| ! | TTTATTCAATAACGTAAGGA+AGG | - | chr1_1:26968261-26968280 | None:intergenic | 25.0% |
| !!! | CAAATTTTCAAGTGGAAAAA+TGG | - | chr1_1:26968308-26968327 | None:intergenic | 25.0% |
| !!! | TATACATGCTTGTTTGTTTT+TGG | - | chr1_1:26968334-26968353 | None:intergenic | 25.0% |
| !!! | AAAATGTTTTGGATACAACT+TGG | + | chr1_1:26968494-26968513 | Msa0016230:CDS | 25.0% |
| !!! | CTTTTAGTTTTCCAATACAA+AGG | + | chr1_1:26968549-26968568 | Msa0016230:intron | 25.0% |
| ! | TATGTCATTATACTAGATGA+TGG | + | chr1_1:26968585-26968604 | Msa0016230:CDS | 25.0% |
| !! | TATACTAGATGATGGTAAAT+TGG | + | chr1_1:26968593-26968612 | Msa0016230:CDS | 25.0% |
| ! | AAGTGTTAACAATTAACCTA+AGG | + | chr1_1:26969326-26969345 | Msa0016230:intron | 25.0% |
| ! | TTATCTTAACATGTATCCTT+AGG | - | chr1_1:26969345-26969364 | None:intergenic | 25.0% |
| ! | AATGTCTCTAAATAATTTGG+TGG | + | chr1_1:26969401-26969420 | Msa0016230:intron | 25.0% |
| ! | GAATCTATAGAAACATGAAA+TGG | - | chr1_1:26969512-26969531 | None:intergenic | 25.0% |
| ! | AGTAAACATGAAGATTTACA+TGG | + | chr1_1:26969726-26969745 | Msa0016230:CDS | 25.0% |
| ! | AGATTTACATGGAAAATTTG+TGG | + | chr1_1:26969737-26969756 | Msa0016230:CDS | 25.0% |
| !! | AGTGTTTTACTAAACATCTA+GGG | - | chr1_1:26970200-26970219 | None:intergenic | 25.0% |
| !! | AAGTGTTTTACTAAACATCT+AGG | - | chr1_1:26970201-26970220 | None:intergenic | 25.0% |
| !! | ATGTTATTATCGGTTATGTA+TGG | + | chr1_1:26970371-26970390 | Msa0016230:intron | 25.0% |
| !! | TGTTATTATCGGTTATGTAT+GGG | + | chr1_1:26970372-26970391 | Msa0016230:intron | 25.0% |
| ! | TGTCATGAATATGTATGTTT+CGG | + | chr1_1:26970625-26970644 | Msa0016230:intron | 25.0% |
| ! | AATTCTAGACACCTTTAATT+TGG | + | chr1_1:26971193-26971212 | Msa0016230:intron | 25.0% |
| !! | TTTACGTACCTTACAATTTT+TGG | + | chr1_1:26971249-26971268 | Msa0016230:intron | 25.0% |
| !! | TTACGTACCTTACAATTTTT+GGG | + | chr1_1:26971250-26971269 | Msa0016230:intron | 25.0% |
| ! | CAGTTGACAAGATAATATAA+AGG | - | chr1_1:26971314-26971333 | None:intergenic | 25.0% |
| ! | AAGTTTGACTAAAAAAGTTC+GGG | - | chr1_1:26971398-26971417 | None:intergenic | 25.0% |
| ! | GAAGTTTGACTAAAAAAGTT+CGG | - | chr1_1:26971399-26971418 | None:intergenic | 25.0% |
| ! | GTTGAGTTAAGATTCATTAA+CGG | + | chr1_1:26971585-26971604 | Msa0016230:intron | 25.0% |
| !! | TCAAAAACACAAGACATTTT+GGG | + | chr1_1:26971894-26971913 | Msa0016230:intron | 25.0% |
| !! | TTTGGGTCTAAAATATAAAC+TGG | + | chr1_1:26971911-26971930 | Msa0016230:intron | 25.0% |
| ! | AATGATGAATGTGAATTGAA+GGG | - | chr1_1:26971960-26971979 | None:intergenic | 25.0% |
| ! | AAATGATGAATGTGAATTGA+AGG | - | chr1_1:26971961-26971980 | None:intergenic | 25.0% |
| ! | AATCGAAAGAATGAATGAAA+AGG | - | chr1_1:26972129-26972148 | None:intergenic | 25.0% |
| !! | TAATTGTGTATCACACTTTT+TGG | + | chr1_1:26972192-26972211 | Msa0016230:intron | 25.0% |
| ! | AGATAGCATAAACTGAAAAT+GGG | - | chr1_1:26972253-26972272 | None:intergenic | 25.0% |
| ! | AAGATAGCATAAACTGAAAA+TGG | - | chr1_1:26972254-26972273 | None:intergenic | 25.0% |
| ! | AAAATTGACAACAGTGTTAT+TGG | + | chr1_1:26972294-26972313 | Msa0016230:intron | 25.0% |
| ! | AATGATAATAAATCCGTACA+TGG | - | chr1_1:26972554-26972573 | None:intergenic | 25.0% |
| ! | AATGCACAAAAACTAAAGAT+AGG | + | chr1_1:26973183-26973202 | Msa0016230:CDS | 25.0% |
| ! | TTATAACCTTCAATGTGATA+TGG | - | chr1_1:26973272-26973291 | None:intergenic | 25.0% |
| ! | CATTGAAGGTTATAATAGAT+TGG | + | chr1_1:26973277-26973296 | Msa0016230:CDS | 25.0% |
| ! | TATTGCTGGAAAAAAAGTAA+AGG | - | chr1_1:26973310-26973329 | None:intergenic | 25.0% |
| ! | ATTTACAAGAGAAACATTTG+GGG | - | chr1_1:26973403-26973422 | None:intergenic | 25.0% |
| ! | CTATTTACAAGAGAAACATT+TGG | - | chr1_1:26973405-26973424 | None:intergenic | 25.0% |
| ! | TTAAGTATATGTAATGTGCA+TGG | - | chr1_1:26973591-26973610 | None:intergenic | 25.0% |
| ! | AGTAGTATGTTTACATTACA+TGG | - | chr1_1:26974047-26974066 | None:intergenic | 25.0% |
| ! | TTGAATTTGTCGTGTAAATT+CGG | - | chr1_1:26974151-26974170 | None:intergenic | 25.0% |
| !! | TTTTGTAACATCATTAGACA+AGG | + | chr1_1:26974174-26974193 | Msa0016230:CDS | 25.0% |
| ! | TTTGTTCTTATATATGCAGT+TGG | + | chr1_1:26974258-26974277 | Msa0016230:intron | 25.0% |
| AGTACTTGTAGAATAGTGTT+TGG | - | chr1_1:26967743-26967762 | None:intergenic | 30.0% | |
| ! | AAGATTAAGTGATTTTGCTG+TGG | - | chr1_1:26967772-26967791 | None:intergenic | 30.0% |
| GAGAAATGAATGAATAAAGG+AGG | + | chr1_1:26968002-26968021 | Msa0016230:intron | 30.0% | |
| !! | TTGCTTCAATTTGTTGGTTA+TGG | + | chr1_1:26968234-26968253 | Msa0016230:intron | 30.0% |
| ! | AGTTTGCTTCTCAAAAAAGA+AGG | + | chr1_1:26968280-26968299 | Msa0016230:intron | 30.0% |
| !!! | TTTGGTGTCAAATTTTCAAG+TGG | - | chr1_1:26968316-26968335 | None:intergenic | 30.0% |
| ! | ATGATGTTTGGTTTCTTGAT+TGG | + | chr1_1:26968519-26968538 | Msa0016230:intron | 30.0% |
| !! | TTAGTTTTCCAATACAAAGG+AGG | + | chr1_1:26968552-26968571 | Msa0016230:intron | 30.0% |
| ! | TAGTTTTCCAATACAAAGGA+GGG | + | chr1_1:26968553-26968572 | Msa0016230:intron | 30.0% |
| TACAATGCTTGTTTGAATCA+TGG | - | chr1_1:26968653-26968672 | None:intergenic | 30.0% | |
| ! | ATATTAACTTTTGTCCCATG+AGG | - | chr1_1:26968750-26968769 | None:intergenic | 30.0% |
| ! | CTTTTTCTTTCTTGCTTTCT+TGG | + | chr1_1:26968811-26968830 | Msa0016230:intron | 30.0% |
| GGTCAATTTAAAGAAGTTAG+AGG | - | chr1_1:26969018-26969037 | None:intergenic | 30.0% | |
| ! | TGATCACCTTATTTCTTTAG+AGG | + | chr1_1:26969088-26969107 | Msa0016230:intron | 30.0% |
| CAAACTTGATTGACAGAAAA+AGG | + | chr1_1:26969128-26969147 | Msa0016230:intron | 30.0% | |
| ! | CATGTTTCTATAGATTCAGA+AGG | + | chr1_1:26969515-26969534 | Msa0016230:intron | 30.0% |
| GTGTTATGTTTCATTACATC+AGG | - | chr1_1:26969542-26969561 | None:intergenic | 30.0% | |
| TACATCATAAGTAATCCTAC+CGG | - | chr1_1:26969593-26969612 | None:intergenic | 30.0% | |
| TGTTTACTCAAGAACTCATT+TGG | - | chr1_1:26969714-26969733 | None:intergenic | 30.0% | |
| AAATTTGTGGAGTTGAAAGT+TGG | + | chr1_1:26969750-26969769 | Msa0016230:CDS | 30.0% | |
| GAAGAATGCAAATTGAAGTT+TGG | + | chr1_1:26969849-26969868 | Msa0016230:CDS | 30.0% | |
| TTGATACAACGTTTGCAAAA+CGG | + | chr1_1:26969964-26969983 | Msa0016230:intron | 30.0% | |
| ! | ATTTCTTTGTTTCGTTCTTG+AGG | + | chr1_1:26970106-26970125 | Msa0016230:intron | 30.0% |
| ! | TTTCTTTGTTTCGTTCTTGA+GGG | + | chr1_1:26970107-26970126 | Msa0016230:intron | 30.0% |
| ! | ATTTCTTTGTTTCGTTCTTG+AGG | + | chr1_1:26970106-26970125 | Msa0016230:intron | 30.0% |
| ! | TTTCTTTGTTTCGTTCTTGA+GGG | + | chr1_1:26970107-26970126 | Msa0016230:intron | 30.0% |
| ! | GTTATGTATGGGATTGTTTT+CGG | + | chr1_1:26970383-26970402 | Msa0016230:intron | 30.0% |
| AGGTTCGTATAATTCAACAA+AGG | - | chr1_1:26970729-26970748 | None:intergenic | 30.0% | |
| TGAATTATACGAACCTATGA+CGG | + | chr1_1:26970733-26970752 | Msa0016230:intron | 30.0% | |
| ! | AGAGCGTTAAAAACTGATAT+TGG | - | chr1_1:26971166-26971185 | None:intergenic | 30.0% |
| AATTGTAACGGCCAAATTAA+AGG | - | chr1_1:26971207-26971226 | None:intergenic | 30.0% | |
| ! | TACGTACCTTACAATTTTTG+GGG | + | chr1_1:26971251-26971270 | Msa0016230:intron | 30.0% |
| TTGAAACCCCAAAAATTGTA+AGG | - | chr1_1:26971260-26971279 | None:intergenic | 30.0% | |
| GAAGTCAGAAAAAATAGCTT+GGG | - | chr1_1:26971498-26971517 | None:intergenic | 30.0% | |
| TGAAGTCAGAAAAAATAGCT+TGG | - | chr1_1:26971499-26971518 | None:intergenic | 30.0% | |
| !! | TGTGTTTTTGAGAAAATGCT+TGG | - | chr1_1:26971885-26971904 | None:intergenic | 30.0% |
| ! | CTCAAAAACACAAGACATTT+TGG | + | chr1_1:26971893-26971912 | Msa0016230:intron | 30.0% |
| AATTGAAGGGATTGTATTGT+GGG | - | chr1_1:26971947-26971966 | None:intergenic | 30.0% | |
| TGTCGAGTGTTTATTTACTA+TGG | + | chr1_1:26971998-26972017 | Msa0016230:intron | 30.0% | |
| TGTTTATTTACTATGGACGT+GGG | + | chr1_1:26972005-26972024 | Msa0016230:intron | 30.0% | |
| ! | CATACATTGTTTCTCACAAA+TGG | + | chr1_1:26972353-26972372 | Msa0016230:intron | 30.0% |
| !!! | GCTTTGTTTTCTTAGGTATT+TGG | + | chr1_1:26972404-26972423 | Msa0016230:intron | 30.0% |
| ! | TGTTTTCTTAGGTATTTGGA+TGG | + | chr1_1:26972408-26972427 | Msa0016230:intron | 30.0% |
| ! | GTTTTCTTAGGTATTTGGAT+GGG | + | chr1_1:26972409-26972428 | Msa0016230:intron | 30.0% |
| ! | TTTTCTTAGGTATTTGGATG+GGG | + | chr1_1:26972410-26972429 | Msa0016230:intron | 30.0% |
| GTGCAATAATAGAGCAAAAA+TGG | - | chr1_1:26972669-26972688 | None:intergenic | 30.0% | |
| ! | ATGAAGTTTGCTTAATCAGT+TGG | + | chr1_1:26972826-26972845 | Msa0016230:intron | 30.0% |
| GTCTGAGTTCAAAATGAATT+GGG | + | chr1_1:26973058-26973077 | Msa0016230:CDS | 30.0% | |
| !! | AGAGGCTTTCATTTTTCTAT+AGG | + | chr1_1:26973348-26973367 | Msa0016230:intron | 30.0% |
| AAGTAACAATCGAGACATTT+AGG | + | chr1_1:26973538-26973557 | Msa0016230:intron | 30.0% | |
| ATCTAGGTATTATCTGTTTC+AGG | - | chr1_1:26973651-26973670 | None:intergenic | 30.0% | |
| TGAAACAGATAATACCTAGA+TGG | + | chr1_1:26973650-26973669 | Msa0016230:intron | 30.0% | |
| TATTCTTTCGAAAACCATCT+AGG | - | chr1_1:26973667-26973686 | None:intergenic | 30.0% | |
| ATGTTTACATTACATGGACA+AGG | - | chr1_1:26974041-26974060 | None:intergenic | 30.0% | |
| GAATTTACACGACAAATTCA+AGG | + | chr1_1:26974150-26974169 | Msa0016230:CDS | 30.0% | |
| TGAAAGTAGAATAAGGAACA+TGG | + | chr1_1:26974340-26974359 | Msa0016230:intron | 30.0% | |
| TATGATCAACATCTCGATTA+TGG | + | chr1_1:26974378-26974397 | Msa0016230:CDS | 30.0% | |
| ATGATCAACATCTCGATTAT+GGG | + | chr1_1:26974379-26974398 | Msa0016230:CDS | 30.0% | |
| ACTTGTAGAATAGTGTTTGG+CGG | - | chr1_1:26967740-26967759 | None:intergenic | 35.0% | |
| !! | ATTAAGTGATTTTGCTGTGG+TGG | - | chr1_1:26967769-26967788 | None:intergenic | 35.0% |
| ATAGTATCATGGCCTTTCAT+CGG | + | chr1_1:26967808-26967827 | Msa0016230:CDS | 35.0% | |
| ! | CGCAATTTGCTTCAATTTGT+TGG | + | chr1_1:26968228-26968247 | Msa0016230:intron | 35.0% |
| TACTTGTCCACAAAATTCCT+TGG | - | chr1_1:26968419-26968438 | None:intergenic | 35.0% | |
| ! | GGAATTTTGTGGACAAGTAT+TGG | + | chr1_1:26968420-26968439 | Msa0016230:CDS | 35.0% |
| !! | TTTGTGGACAAGTATTGGAA+AGG | + | chr1_1:26968425-26968444 | Msa0016230:CDS | 35.0% |
| ! | GATCTGAGTGCAAAATGTTT+TGG | + | chr1_1:26968483-26968502 | Msa0016230:CDS | 35.0% |
| !! | TACAACTTGGTGATGATGTT+TGG | + | chr1_1:26968507-26968526 | Msa0016230:intron | 35.0% |
| !!! | GGAAGAGAAAACTTTTTTGC+TGG | + | chr1_1:26968958-26968977 | Msa0016230:CDS | 35.0% |
| ! | CACTCTCCTCTAAAGAAATA+AGG | - | chr1_1:26969097-26969116 | None:intergenic | 35.0% |
| TCTGTCAATCAAGTTTGTGT+GGG | - | chr1_1:26969125-26969144 | None:intergenic | 35.0% | |
| TTCTGTCAATCAAGTTTGTG+TGG | - | chr1_1:26969126-26969145 | None:intergenic | 35.0% | |
| ACCAGCAAACAAAAATTCAC+AGG | + | chr1_1:26969179-26969198 | Msa0016230:intron | 35.0% | |
| !! | ACCTGTGAATTTTTGTTTGC+TGG | - | chr1_1:26969183-26969202 | None:intergenic | 35.0% |
| TGTTGTGAATTCATCATACC+CGG | + | chr1_1:26969571-26969590 | Msa0016230:CDS | 35.0% | |
| ACATCATAAGTAATCCTACC+GGG | - | chr1_1:26969592-26969611 | None:intergenic | 35.0% | |
| ! | AAGCTAGTATTTAGAGCTTC+TGG | + | chr1_1:26969987-26970006 | Msa0016230:intron | 35.0% |
| ! | TTTAGAGCTTCTGGAAATCA+CGG | + | chr1_1:26969996-26970015 | Msa0016230:intron | 35.0% |
| ! | GTGCTTTTGTATGTTGCAAA+CGG | + | chr1_1:26970046-26970065 | Msa0016230:intron | 35.0% |
| ! | TGCTTTTGTATGTTGCAAAC+GGG | + | chr1_1:26970047-26970066 | Msa0016230:intron | 35.0% |
| TTTAACGCTCTTGTACCAAA+CGG | + | chr1_1:26970248-26970267 | Msa0016230:intron | 35.0% | |
| TTGATGCGTTTAACGTATCT+CGG | + | chr1_1:26970650-26970669 | Msa0016230:intron | 35.0% | |
| CTATATATTACGTGTCATGG+CGG | - | chr1_1:26970700-26970719 | None:intergenic | 35.0% | |
| TGCCTATATATTACGTGTCA+TGG | - | chr1_1:26970703-26970722 | None:intergenic | 35.0% | |
| AACCTGAACAAAGAAGGAAA+GGG | - | chr1_1:26970907-26970926 | None:intergenic | 35.0% | |
| ! | TTTTCTCCTTACCTTTGACA+CGG | - | chr1_1:26970940-26970959 | None:intergenic | 35.0% |
| CAAAGGTAAGGAGAAAACTA+CGG | + | chr1_1:26970943-26970962 | Msa0016230:intron | 35.0% | |
| AATACGGAACAACATAAGTC+GGG | - | chr1_1:26971128-26971147 | None:intergenic | 35.0% | |
| CAATACGGAACAACATAAGT+CGG | - | chr1_1:26971129-26971148 | None:intergenic | 35.0% | |
| TTGGCCGTTACAATTATACT+TGG | + | chr1_1:26971212-26971231 | Msa0016230:intron | 35.0% | |
| CCAGCCAAGTATAATTGTAA+CGG | - | chr1_1:26971219-26971238 | None:intergenic | 35.0% | |
| TCAGAAAAAATAGCTTGGGT+GGG | - | chr1_1:26971494-26971513 | None:intergenic | 35.0% | |
| GAATTGAAGGGATTGTATTG+TGG | - | chr1_1:26971948-26971967 | None:intergenic | 35.0% | |
| GTGTTTATTTACTATGGACG+TGG | + | chr1_1:26972004-26972023 | Msa0016230:intron | 35.0% | |
| ACTCACAAAGTTGAATGGTT+TGG | - | chr1_1:26972057-26972076 | None:intergenic | 35.0% | |
| TTGCAACTCACAAAGTTGAA+TGG | - | chr1_1:26972062-26972081 | None:intergenic | 35.0% | |
| TACGAAGCAAACTTCATTCA+AGG | - | chr1_1:26972469-26972488 | None:intergenic | 35.0% | |
| ACCATCATGAAAACAGTGTT+GGG | - | chr1_1:26972633-26972652 | None:intergenic | 35.0% | |
| AACCATCATGAAAACAGTGT+TGG | - | chr1_1:26972634-26972653 | None:intergenic | 35.0% | |
| CTGCATTAATCACTTGATGT+AGG | + | chr1_1:26972899-26972918 | Msa0016230:intron | 35.0% | |
| ! | TGTCTCTCTACGAATTTTCT+TGG | - | chr1_1:26972993-26973012 | None:intergenic | 35.0% |
| GAAAATTCGTAGAGAGACAT+TGG | + | chr1_1:26972994-26973013 | Msa0016230:CDS | 35.0% | |
| ! | ATTTTGAACTCAGACCCATT+TGG | - | chr1_1:26973053-26973072 | None:intergenic | 35.0% |
| GGTCTGAGTTCAAAATGAAT+TGG | + | chr1_1:26973057-26973076 | Msa0016230:CDS | 35.0% | |
| AAAATGAATTGGGTACAACG+CGG | + | chr1_1:26973068-26973087 | Msa0016230:CDS | 35.0% | |
| ! | ATTTCTTAGCTTTCTTACCC+CGG | - | chr1_1:26973166-26973185 | None:intergenic | 35.0% |
| TGCACAAATTATCATCCCAA+TGG | + | chr1_1:26973218-26973237 | Msa0016230:CDS | 35.0% | |
| GCACAAATTATCATCCCAAT+GGG | + | chr1_1:26973219-26973238 | Msa0016230:CDS | 35.0% | |
| GATAATTTGACGGTGAAACT+AGG | - | chr1_1:26973248-26973267 | None:intergenic | 35.0% | |
| GTGATATGGCGATAATTTGA+CGG | - | chr1_1:26973258-26973277 | None:intergenic | 35.0% | |
| TTATCGCCATATCACATTGA+AGG | + | chr1_1:26973263-26973282 | Msa0016230:CDS | 35.0% | |
| CAGTTAGGTACAAATATTGC+TGG | - | chr1_1:26973324-26973343 | None:intergenic | 35.0% | |
| TTTGTACCTAACTGTGTAAG+AGG | + | chr1_1:26973330-26973349 | Msa0016230:intron | 35.0% | |
| ! | GTATTATCTGTTTCAGGTCA+TGG | - | chr1_1:26973645-26973664 | None:intergenic | 35.0% |
| GAATGAGTTATTGCAACAGA+AGG | + | chr1_1:26973690-26973709 | Msa0016230:CDS | 35.0% | |
| !! | CAAGAGCAGTTTTATAATGC+AGG | + | chr1_1:26973774-26973793 | Msa0016230:intron | 35.0% |
| !! | AGCAGTTTTATAATGCAGGT+TGG | + | chr1_1:26973778-26973797 | Msa0016230:intron | 35.0% |
| AAATACCATGAAACTGCTCT+GGG | - | chr1_1:26973924-26973943 | None:intergenic | 35.0% | |
| ! | AGCGAGTTGAAAGTAGAATA+AGG | + | chr1_1:26974333-26974352 | Msa0016230:intron | 35.0% |
| AGAATAAGGAACATGGTTTG+TGG | + | chr1_1:26974347-26974366 | Msa0016230:intron | 35.0% | |
| TGTGCAAAATCATGTGTTCA+AGG | + | chr1_1:26974482-26974501 | Msa0016230:CDS | 35.0% | |
| ACTCACGAAGTTGAATGGTT+AGG | - | chr1_1:26967887-26967906 | None:intergenic | 40.0% | |
| TTGCAACTCACGAAGTTGAA+TGG | - | chr1_1:26967892-26967911 | None:intergenic | 40.0% | |
| TCTTCAACAAACACCGTTGA+AGG | - | chr1_1:26968084-26968103 | None:intergenic | 40.0% | |
| TATATCTGCAGACGATTCCA+AGG | + | chr1_1:26968399-26968418 | Msa0016230:intron | 40.0% | |
| ! | GACGATTCCAAGGAATTTTG+TGG | + | chr1_1:26968409-26968428 | Msa0016230:intron | 40.0% |
| ! | GTTACCTGAGACATTTTGCT+TGG | - | chr1_1:26968781-26968800 | None:intergenic | 40.0% |
| TTCCATCATAACCTTGTGAG+GGG | - | chr1_1:26968911-26968930 | None:intergenic | 40.0% | |
| CTTCCATCATAACCTTGTGA+GGG | - | chr1_1:26968912-26968931 | None:intergenic | 40.0% | |
| TTTGTGGAGTTGAAAGTTGG+TGG | + | chr1_1:26969753-26969772 | Msa0016230:CDS | 40.0% | |
| CTGCATAAAATCTACTGCCT+TGG | - | chr1_1:26969812-26969831 | None:intergenic | 40.0% | |
| ! | CAAGGCAGTAGATTTTATGC+AGG | + | chr1_1:26969810-26969829 | Msa0016230:CDS | 40.0% |
| ! | GCAGTAGATTTTATGCAGGT+TGG | + | chr1_1:26969814-26969833 | Msa0016230:CDS | 40.0% |
| ! | AAATCACGGTAAGAGTGCAT+CGG | + | chr1_1:26970010-26970029 | Msa0016230:intron | 40.0% |
| ! | ACATACAAAAGCACGTTTGC+AGG | - | chr1_1:26970040-26970059 | None:intergenic | 40.0% |
| TTAACGCTCTTGTACCAAAC+GGG | + | chr1_1:26970249-26970268 | Msa0016230:intron | 40.0% | |
| ATCTTGTCCTGTTTCCCAAA+CGG | - | chr1_1:26970301-26970320 | None:intergenic | 40.0% | |
| ! | TTCATTTTACGGAAAGTCCC+GGG | - | chr1_1:26970418-26970437 | None:intergenic | 40.0% |
| ! | GTTCATTTTACGGAAAGTCC+CGG | - | chr1_1:26970419-26970438 | None:intergenic | 40.0% |
| AAGCAAGACTCAAGTTATGC+CGG | + | chr1_1:26970563-26970582 | Msa0016230:intron | 40.0% | |
| TTCATGACACGATCCTAAAC+CGG | - | chr1_1:26970614-26970633 | None:intergenic | 40.0% | |
| GAGATACGTTAAACGCATCA+AGG | - | chr1_1:26970651-26970670 | None:intergenic | 40.0% | |
| TTTAACGTATCTCGGTAACG+CGG | + | chr1_1:26970658-26970677 | Msa0016230:intron | 40.0% | |
| CGCCATGACACGTAATATAT+AGG | + | chr1_1:26970698-26970717 | Msa0016230:intron | 40.0% | |
| GACGGTTGATTATATGTGTG+TGG | - | chr1_1:26970792-26970811 | None:intergenic | 40.0% | |
| CACACATATAATCAACCGTC+AGG | + | chr1_1:26970792-26970811 | Msa0016230:intron | 40.0% | |
| GTGACTACAATACAACCTGA+CGG | - | chr1_1:26970810-26970829 | None:intergenic | 40.0% | |
| ATCCCTTTCCTTCTTTGTTC+AGG | + | chr1_1:26970902-26970921 | Msa0016230:intron | 40.0% | |
| GAACCTGAACAAAGAAGGAA+AGG | - | chr1_1:26970908-26970927 | None:intergenic | 40.0% | |
| TTTCTCCTTACCTTTGACAC+GGG | - | chr1_1:26970939-26970958 | None:intergenic | 40.0% | |
| CAAGCTATGAGACATAAAGC+TGG | - | chr1_1:26970990-26971009 | None:intergenic | 40.0% | |
| CCGTTACAATTATACTTGGC+TGG | + | chr1_1:26971216-26971235 | Msa0016230:intron | 40.0% | |
| GTCAGAAAAAATAGCTTGGG+TGG | - | chr1_1:26971495-26971514 | None:intergenic | 40.0% | |
| TAGGTTAGATGTCGATGTTG+AGG | - | chr1_1:26971544-26971563 | None:intergenic | 40.0% | |
| CTTGGACACAATCACATGAA+TGG | - | chr1_1:26971867-26971886 | None:intergenic | 40.0% | |
| ! | CATCATGAAAACAGTGTTGG+GGG | - | chr1_1:26972631-26972650 | None:intergenic | 40.0% |
| CCATCATGAAAACAGTGTTG+GGG | - | chr1_1:26972632-26972651 | None:intergenic | 40.0% | |
| TCATGTATTAGTGCTATGCC+TGG | + | chr1_1:26972784-26972803 | Msa0016230:intron | 40.0% | |
| ! | CACATTTTTGAACCAAAGCC+AGG | - | chr1_1:26972805-26972824 | None:intergenic | 40.0% |
| !! | CTGGCTTTGGTTCAAAAATG+TGG | + | chr1_1:26972803-26972822 | Msa0016230:intron | 40.0% |
| TTTGGAAGTCTAAGCGATGT+TGG | - | chr1_1:26973035-26973054 | None:intergenic | 40.0% | |
| ACATCGCTTAGACTTCCAAA+TGG | + | chr1_1:26973035-26973054 | Msa0016230:CDS | 40.0% | |
| CATCGCTTAGACTTCCAAAT+GGG | + | chr1_1:26973036-26973055 | Msa0016230:CDS | 40.0% | |
| GCAGAGACTAAAAGAAACTG+TGG | + | chr1_1:26973137-26973156 | Msa0016230:intron | 40.0% | |
| GAGACTAAAAGAAACTGTGG+AGG | + | chr1_1:26973140-26973159 | Msa0016230:intron | 40.0% | |
| TGAAAGCCTCTTACACAGTT+AGG | - | chr1_1:26973339-26973358 | None:intergenic | 40.0% | |
| ! | AAGGCCACAATTAGAAGTGT+TGG | + | chr1_1:26973709-26973728 | Msa0016230:CDS | 40.0% |
| CTCACCAACACTTCTAATTG+TGG | - | chr1_1:26973716-26973735 | None:intergenic | 40.0% | |
| !! | CACAATTAGAAGTGTTGGTG+AGG | + | chr1_1:26973714-26973733 | Msa0016230:CDS | 40.0% |
| !! | GTTTTATAATGCAGGTTGGC+TGG | + | chr1_1:26973782-26973801 | Msa0016230:intron | 40.0% |
| !! | TGGCTGGAAGTCATTTTCAA+AGG | + | chr1_1:26973798-26973817 | Msa0016230:CDS | 40.0% |
| TACTATTATCCCAGCCACAA+AGG | + | chr1_1:26973891-26973910 | Msa0016230:CDS | 40.0% | |
| GAAATACCATGAAACTGCTC+TGG | - | chr1_1:26973925-26973944 | None:intergenic | 40.0% | |
| ! | TGACTTTTTAACAGCTCGCT+TGG | - | chr1_1:26974292-26974311 | None:intergenic | 40.0% |
| ! | ATAAGGAACATGGTTTGTGG+AGG | + | chr1_1:26974350-26974369 | Msa0016230:intron | 40.0% |
| ATCAACATCTCGATTATGGG+TGG | + | chr1_1:26974382-26974401 | Msa0016230:CDS | 40.0% | |
| GATTATGGGTGGTTCACTAA+AGG | + | chr1_1:26974393-26974412 | Msa0016230:CDS | 40.0% | |
| AGAGAACGCAATGTGAAGAT+TGG | + | chr1_1:26974432-26974451 | Msa0016230:CDS | 40.0% | |
| GCGGTGATAATTGTGTGTTG+TGG | - | chr1_1:26967721-26967740 | None:intergenic | 45.0% | |
| AATCGTGCTTTGCCGATGAA+AGG | - | chr1_1:26967823-26967842 | None:intergenic | 45.0% | |
| CGGCAAAGCACGATTTACTA+TGG | + | chr1_1:26967828-26967847 | Msa0016230:CDS | 45.0% | |
| AGCACGATTTACTATGGACG+TGG | + | chr1_1:26967834-26967853 | Msa0016230:CDS | 45.0% | |
| GCACGATTTACTATGGACGT+GGG | + | chr1_1:26967835-26967854 | Msa0016230:CDS | 45.0% | |
| AATCGGACCCTCCTTTGTAT+TGG | - | chr1_1:26968563-26968582 | None:intergenic | 45.0% | |
| ACTAATTCTGCCACACCTCA+TGG | + | chr1_1:26968732-26968751 | Msa0016230:CDS | 45.0% | |
| CTAATTCTGCCACACCTCAT+GGG | + | chr1_1:26968733-26968752 | Msa0016230:CDS | 45.0% | |
| ! | AACTTTTGTCCCATGAGGTG+TGG | - | chr1_1:26968745-26968764 | None:intergenic | 45.0% |
| GCAACCAAGCAAAATGTCTC+AGG | + | chr1_1:26968774-26968793 | Msa0016230:CDS | 45.0% | |
| TCCATCATAACCTTGTGAGG+GGG | - | chr1_1:26968910-26968929 | None:intergenic | 45.0% | |
| CCTTCCATCATAACCTTGTG+AGG | - | chr1_1:26968913-26968932 | None:intergenic | 45.0% | |
| ! | CCTCACAAGGTTATGATGGA+AGG | + | chr1_1:26968910-26968929 | Msa0016230:CDS | 45.0% |
| GTGAATTCATCATACCCGGT+AGG | + | chr1_1:26969575-26969594 | Msa0016230:intron | 45.0% | |
| !! | TGAAAGTTGGTGGAAAGTCG+TGG | + | chr1_1:26969763-26969782 | Msa0016230:CDS | 45.0% |
| ! | TGCAGGTTGGAGAAAGTTTC+AGG | + | chr1_1:26969827-26969846 | Msa0016230:CDS | 45.0% |
| ! | AATCACGGTAAGAGTGCATC+GGG | + | chr1_1:26970011-26970030 | Msa0016230:intron | 45.0% |
| TAACGCTCTTGTACCAAACG+GGG | + | chr1_1:26970250-26970269 | Msa0016230:intron | 45.0% | |
| TCTTGTCCTGTTTCCCAAAC+GGG | - | chr1_1:26970300-26970319 | None:intergenic | 45.0% | |
| AACAGGACAAGATTCGCAAG+AGG | + | chr1_1:26970308-26970327 | Msa0016230:intron | 45.0% | |
| ACAGGACAAGATTCGCAAGA+GGG | + | chr1_1:26970309-26970328 | Msa0016230:intron | 45.0% | |
| AGTTATGCCGGCAATGATCT+AGG | + | chr1_1:26970575-26970594 | Msa0016230:intron | 45.0% | |
| TTTAGCATGCACTTCCGTCT+AGG | + | chr1_1:26970757-26970776 | Msa0016230:intron | 45.0% | |
| TGTGGTCATGCTTACCTAGA+CGG | - | chr1_1:26970774-26970793 | None:intergenic | 45.0% | |
| CAGGTTGTATTGTAGTCACG+TGG | + | chr1_1:26970811-26970830 | Msa0016230:intron | 45.0% | |
| AGTGAGTTCTACCTAACCCT+AGG | - | chr1_1:26970867-26970886 | None:intergenic | 45.0% | |
| CCTGTGAACCTGAACAAAGA+AGG | - | chr1_1:26970913-26970932 | None:intergenic | 45.0% | |
| ! | CCTTCTTTGTTCAGGTTCAC+AGG | + | chr1_1:26970910-26970929 | Msa0016230:intron | 45.0% |
| ! | ACGGATTGATCGTGCTATCT+TGG | + | chr1_1:26970962-26970981 | Msa0016230:intron | 45.0% |
| ! | TATACTTGGCTGGTTAGCAG+AGG | + | chr1_1:26971226-26971245 | Msa0016230:intron | 45.0% |
| GTCTGAACTCTGATTCACAG+TGG | - | chr1_1:26971522-26971541 | None:intergenic | 45.0% | |
| TCTTAGGTATTTGGATGGGG+AGG | + | chr1_1:26972413-26972432 | Msa0016230:intron | 45.0% | |
| CTCCTGAGTGATTCGTCATT+TGG | + | chr1_1:26972592-26972611 | Msa0016230:intron | 45.0% | |
| CTCCAAATGACGAATCACTC+AGG | - | chr1_1:26972597-26972616 | None:intergenic | 45.0% | |
| CTGAGTGATTCGTCATTTGG+AGG | + | chr1_1:26972595-26972614 | Msa0016230:intron | 45.0% | |
| ! | CCCCAACACTGTTTTCATGA+TGG | + | chr1_1:26972629-26972648 | Msa0016230:intron | 45.0% |
| ATTAGTGCTATGCCTGGCTT+TGG | + | chr1_1:26972790-26972809 | Msa0016230:intron | 45.0% | |
| CTAAAAGAAACTGTGGAGGC+CGG | + | chr1_1:26973144-26973163 | Msa0016230:CDS | 45.0% | |
| TAAAAGAAACTGTGGAGGCC+GGG | + | chr1_1:26973145-26973164 | Msa0016230:CDS | 45.0% | |
| GTGAAACTAGGACTCCCATT+GGG | - | chr1_1:26973236-26973255 | None:intergenic | 45.0% | |
| !! | TTAGAAGTGTTGGTGAGGAC+AGG | + | chr1_1:26973719-26973738 | Msa0016230:CDS | 45.0% |
| !! | TAGAAGTGTTGGTGAGGACA+GGG | + | chr1_1:26973720-26973739 | Msa0016230:CDS | 45.0% |
| ATGGGTGGTTCACTAAAGGT+TGG | + | chr1_1:26974397-26974416 | Msa0016230:CDS | 45.0% | |
| !!! | TATTTTATAAAATAAAAATG+AGG | - | chr1_1:26969427-26969446 | None:intergenic | 5.0% |
| !! | TTTGAAAAAATAAATTAATT+GGG | - | chr1_1:26971345-26971364 | None:intergenic | 5.0% |
| !!! | TTTTGAAAAAATAAATTAAT+TGG | - | chr1_1:26971346-26971365 | None:intergenic | 5.0% |
| !! | GTATTAAAAAAAAAAAAAAA+AGG | + | chr1_1:26972486-26972505 | Msa0016230:intron | 5.0% |
| TGGACGTGGGAGTGAAACTA+AGG | + | chr1_1:26967848-26967867 | Msa0016230:CDS | 50.0% | |
| GGACGTGGGAGTGAAACTAA+GGG | + | chr1_1:26967849-26967868 | Msa0016230:CDS | 50.0% | |
| TTCCTTAGAACCCCCTCACA+AGG | + | chr1_1:26968897-26968916 | Msa0016230:intron | 50.0% | |
| AACCTTGTGAGGGGGTTCTA+AGG | - | chr1_1:26968902-26968921 | None:intergenic | 50.0% | |
| ACCCCCTCACAAGGTTATGA+TGG | + | chr1_1:26968906-26968925 | Msa0016230:CDS | 50.0% | |
| GAGTACCTGATAGAGCATGG+CGG | - | chr1_1:26968996-26969015 | None:intergenic | 50.0% | |
| !! | GAGGAGTACCTGATAGAGCA+TGG | - | chr1_1:26968999-26969018 | None:intergenic | 50.0% |
| AGTGCGTGTCTGATTTCCCA+GGG | - | chr1_1:26970133-26970152 | None:intergenic | 50.0% | |
| CTCTTGTACCAAACGGGGTT+AGG | + | chr1_1:26970255-26970274 | Msa0016230:intron | 50.0% | |
| TGTACCAAACGGGGTTAGGT+TGG | + | chr1_1:26970259-26970278 | Msa0016230:intron | 50.0% | |
| GTACCAAACGGGGTTAGGTT+GGG | + | chr1_1:26970260-26970279 | Msa0016230:intron | 50.0% | |
| !! | GGGTTAGGTTGGGATCTCAA+GGG | + | chr1_1:26970270-26970289 | Msa0016230:intron | 50.0% |
| !! | GGTTAGGTTGGGATCTCAAG+GGG | + | chr1_1:26970271-26970290 | Msa0016230:intron | 50.0% |
| ATCTCAAGGGGTTTCCCGTT+TGG | + | chr1_1:26970283-26970302 | Msa0016230:intron | 50.0% | |
| TCTCAAGGGGTTTCCCGTTT+GGG | + | chr1_1:26970284-26970303 | Msa0016230:intron | 50.0% | |
| CAGGACAAGATTCGCAAGAG+GGG | + | chr1_1:26970310-26970329 | Msa0016230:intron | 50.0% | |
| ! | TGTTTTCGGACTACTCCACC+CGG | + | chr1_1:26970397-26970416 | Msa0016230:intron | 50.0% |
| ! | ATTTTACGGAAAGTCCCGGG+TGG | - | chr1_1:26970415-26970434 | None:intergenic | 50.0% |
| ACGATCCTAAACCGGACGAT+CGG | - | chr1_1:26970606-26970625 | None:intergenic | 50.0% | |
| TTACGTGTCATGGCGGTCAA+GGG | - | chr1_1:26970693-26970712 | None:intergenic | 50.0% | |
| ATTACGTGTCATGGCGGTCA+AGG | - | chr1_1:26970694-26970713 | None:intergenic | 50.0% | |
| GTGCATGCTAAAGCCGTCAT+AGG | - | chr1_1:26970749-26970768 | None:intergenic | 50.0% | |
| CGGTAACCTCGGGAAACATA+CGG | - | chr1_1:26970840-26970859 | None:intergenic | 50.0% | |
| TCTACCTAACCCTAGGCTGT+CGG | - | chr1_1:26970860-26970879 | None:intergenic | 50.0% | |
| GGGTTAGGTAGAACTCACTG+AGG | + | chr1_1:26970868-26970887 | Msa0016230:intron | 50.0% | |
| TCACAGGTTTCCCGTGTCAA+AGG | + | chr1_1:26970926-26970945 | Msa0016230:intron | 50.0% | |
| GGTTTCCCGTGTCAAAGGTA+AGG | + | chr1_1:26970931-26970950 | Msa0016230:intron | 50.0% | |
| TGGACGTGGGAGTGAATCTA+AGG | + | chr1_1:26972018-26972037 | Msa0016230:intron | 50.0% | |
| GGACGTGGGAGTGAATCTAA+GGG | + | chr1_1:26972019-26972038 | Msa0016230:intron | 50.0% | |
| AAAAGAAACTGTGGAGGCCG+GGG | + | chr1_1:26973146-26973165 | Msa0016230:CDS | 50.0% | |
| GGTGAAACTAGGACTCCCAT+TGG | - | chr1_1:26973237-26973256 | None:intergenic | 50.0% | |
| TGTTTCGTTCTTGAGGGCCC+TGG | + | chr1_1:26970113-26970132 | Msa0016230:intron | 55.0% | |
| GTTTCGTTCTTGAGGGCCCT+GGG | + | chr1_1:26970114-26970133 | Msa0016230:intron | 55.0% | |
| GAGTGCGTGTCTGATTTCCC+AGG | - | chr1_1:26970134-26970153 | None:intergenic | 55.0% | |
| GATCCCAACCTAACCCCGTT+TGG | - | chr1_1:26970266-26970285 | None:intergenic | 55.0% | |
| !! | GGGGTTAGGTTGGGATCTCA+AGG | + | chr1_1:26970269-26970288 | Msa0016230:intron | 55.0% |
| GGGTTTCCCGTTTGGGAAAC+AGG | + | chr1_1:26970291-26970310 | Msa0016230:intron | 55.0% | |
| ! | GTTTTCGGACTACTCCACCC+GGG | + | chr1_1:26970398-26970417 | Msa0016230:intron | 55.0% |
| GGGGAGACCTAGATCATTGC+CGG | - | chr1_1:26970585-26970604 | None:intergenic | 55.0% | |
| GATCCTAAACCGGACGATCG+GGG | - | chr1_1:26970604-26970623 | None:intergenic | 55.0% | |
| CGATCCTAAACCGGACGATC+GGG | - | chr1_1:26970605-26970624 | None:intergenic | 55.0% | |
| TATCTCGGTAACGCGGTCCT+AGG | + | chr1_1:26970665-26970684 | Msa0016230:intron | 55.0% | |
| TGGTGACCGTATGTTTCCCG+AGG | + | chr1_1:26970831-26970850 | Msa0016230:intron | 55.0% | |
| GTTACCGACAGCCTAGGGTT+AGG | + | chr1_1:26970853-26970872 | Msa0016230:intron | 55.0% | |
| GAATTGGGTACAACGCGGTG+AGG | + | chr1_1:26973073-26973092 | Msa0016230:intron | 55.0% | |
| GGCATGGTTCCTTTGTGGCT+GGG | - | chr1_1:26973903-26973922 | None:intergenic | 55.0% | |
| CTCTGGGCATGGTTCCTTTG+TGG | - | chr1_1:26973908-26973927 | None:intergenic | 55.0% | |
| ! | CCATGAAACTGCTCTGGGCA+TGG | - | chr1_1:26973919-26973938 | None:intergenic | 55.0% |
| CCATGCCCAGAGCAGTTTCA+TGG | + | chr1_1:26973916-26973935 | Msa0016230:CDS | 55.0% | |
| AGCAGCCGCCATGCTCTATC+AGG | + | chr1_1:26968988-26969007 | Msa0016230:CDS | 60.0% | |
| AGGGGCCCGCATGTTACTGA+GGG | + | chr1_1:26970328-26970347 | Msa0016230:intron | 60.0% | |
| GGGCTCCCTCAGTAACATGC+GGG | - | chr1_1:26970336-26970355 | None:intergenic | 60.0% | |
| CGGGCTCCCTCAGTAACATG+CGG | - | chr1_1:26970337-26970356 | None:intergenic | 60.0% | |
| TCTAGGTCTCCCCGATCGTC+CGG | + | chr1_1:26970592-26970611 | Msa0016230:intron | 60.0% | |
| TCTCCCCGATCGTCCGGTTT+AGG | + | chr1_1:26970598-26970617 | Msa0016230:intron | 60.0% | |
| CATGGCGGTCAAGGGAACCT+AGG | - | chr1_1:26970685-26970704 | None:intergenic | 60.0% | |
| CCTAGGCTGTCGGTAACCTC+GGG | - | chr1_1:26970850-26970869 | None:intergenic | 60.0% | |
| CCCTAGGCTGTCGGTAACCT+CGG | - | chr1_1:26970851-26970870 | None:intergenic | 60.0% | |
| CCGAGGTTACCGACAGCCTA+GGG | + | chr1_1:26970848-26970867 | Msa0016230:intron | 60.0% | |
| ! | GTGTTGGTGAGGACAGGGCA+TGG | + | chr1_1:26973725-26973744 | Msa0016230:CDS | 60.0% |
| GGGCATGGTTCCTTTGTGGC+TGG | - | chr1_1:26973904-26973923 | None:intergenic | 60.0% | |
| GAGGGGCCCGCATGTTACTG+AGG | + | chr1_1:26970327-26970346 | Msa0016230:intron | 65.0% | |
| CCCGAGGTTACCGACAGCCT+AGG | + | chr1_1:26970847-26970866 | Msa0016230:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 26967705 | 26974527 | 26967705 | ID=Msa0016230;Name=Msa0016230 |
| chr1_1 | mRNA | 26967705 | 26974527 | 26967705 | ID=Msa0016230-mRNA-1;Parent=Msa0016230;Name=Msa0016230-mRNA-1;_AED=0.21;_eAED=0.24;_QI=0|0|0|1|0.5|0.46|13|0|578 |
| chr1_1 | exon | 26967705 | 26967923 | 26967705 | ID=Msa0016230-mRNA-1:exon:9016;Parent=Msa0016230-mRNA-1 |
| chr1_1 | exon | 26968410 | 26968515 | 26968410 | ID=Msa0016230-mRNA-1:exon:9017;Parent=Msa0016230-mRNA-1 |
| chr1_1 | exon | 26968556 | 26968795 | 26968556 | ID=Msa0016230-mRNA-1:exon:9018;Parent=Msa0016230-mRNA-1 |
| chr1_1 | exon | 26968905 | 26969009 | 26968905 | ID=Msa0016230-mRNA-1:exon:9019;Parent=Msa0016230-mRNA-1 |
| chr1_1 | exon | 26969528 | 26969592 | 26969528 | ID=Msa0016230-mRNA-1:exon:9020;Parent=Msa0016230-mRNA-1 |
| chr1_1 | exon | 26969705 | 26969911 | 26969705 | ID=Msa0016230-mRNA-1:exon:9021;Parent=Msa0016230-mRNA-1 |
| chr1_1 | exon | 26972984 | 26973089 | 26972984 | ID=Msa0016230-mRNA-1:exon:9022;Parent=Msa0016230-mRNA-1 |
| chr1_1 | exon | 26973141 | 26973298 | 26973141 | ID=Msa0016230-mRNA-1:exon:9023;Parent=Msa0016230-mRNA-1 |
| chr1_1 | exon | 26973658 | 26973750 | 26973658 | ID=Msa0016230-mRNA-1:exon:9024;Parent=Msa0016230-mRNA-1 |
| chr1_1 | exon | 26973796 | 26973937 | 26973796 | ID=Msa0016230-mRNA-1:exon:9025;Parent=Msa0016230-mRNA-1 |
| chr1_1 | exon | 26974134 | 26974195 | 26974134 | ID=Msa0016230-mRNA-1:exon:9026;Parent=Msa0016230-mRNA-1 |
| chr1_1 | exon | 26974277 | 26974337 | 26974277 | ID=Msa0016230-mRNA-1:exon:9027;Parent=Msa0016230-mRNA-1 |
| chr1_1 | exon | 26974355 | 26974527 | 26974355 | ID=Msa0016230-mRNA-1:exon:9028;Parent=Msa0016230-mRNA-1 |
| chr1_1 | CDS | 26967705 | 26967923 | 26967705 | ID=Msa0016230-mRNA-1:cds;Parent=Msa0016230-mRNA-1 |
| chr1_1 | CDS | 26968410 | 26968515 | 26968410 | ID=Msa0016230-mRNA-1:cds;Parent=Msa0016230-mRNA-1 |
| chr1_1 | CDS | 26968556 | 26968795 | 26968556 | ID=Msa0016230-mRNA-1:cds;Parent=Msa0016230-mRNA-1 |
| chr1_1 | CDS | 26968905 | 26969009 | 26968905 | ID=Msa0016230-mRNA-1:cds;Parent=Msa0016230-mRNA-1 |
| chr1_1 | CDS | 26969528 | 26969592 | 26969528 | ID=Msa0016230-mRNA-1:cds;Parent=Msa0016230-mRNA-1 |
| chr1_1 | CDS | 26969705 | 26969911 | 26969705 | ID=Msa0016230-mRNA-1:cds;Parent=Msa0016230-mRNA-1 |
| chr1_1 | CDS | 26972984 | 26973089 | 26972984 | ID=Msa0016230-mRNA-1:cds;Parent=Msa0016230-mRNA-1 |
| chr1_1 | CDS | 26973141 | 26973298 | 26973141 | ID=Msa0016230-mRNA-1:cds;Parent=Msa0016230-mRNA-1 |
| chr1_1 | CDS | 26973658 | 26973750 | 26973658 | ID=Msa0016230-mRNA-1:cds;Parent=Msa0016230-mRNA-1 |
| chr1_1 | CDS | 26973796 | 26973937 | 26973796 | ID=Msa0016230-mRNA-1:cds;Parent=Msa0016230-mRNA-1 |
| chr1_1 | CDS | 26974134 | 26974195 | 26974134 | ID=Msa0016230-mRNA-1:cds;Parent=Msa0016230-mRNA-1 |
| chr1_1 | CDS | 26974277 | 26974337 | 26974277 | ID=Msa0016230-mRNA-1:cds;Parent=Msa0016230-mRNA-1 |
| chr1_1 | CDS | 26974355 | 26974527 | 26974355 | ID=Msa0016230-mRNA-1:cds;Parent=Msa0016230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
